AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0837970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 146 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACACTACTCTTGTTTAT+TGG 0.130292 5_4:-12095814 None:intergenic
GATAACTCATGTGCGATATT+TGG 0.192760 5_4:+12093412 Msa0837970:five_prime_UTR
CTGGTGGACACAATGTTATT+TGG 0.218175 5_4:+12094514 Msa0837970:five_prime_UTR
TGGTGGACACAATGTTATTT+GGG 0.250228 5_4:+12094515 Msa0837970:five_prime_UTR
CATTGTTTATAATTGTATAT+AGG 0.251213 5_4:+12096300 Msa0837970:three_prime_UTR
TTCAAGTACCACTTCTAAAA+TGG 0.286244 5_4:+12095877 Msa0837970:exon
AAGTAGGAAAACACATAAAT+AGG 0.298413 5_4:-12093387 None:intergenic
ACATTGAGCAAGCTTTAAAA+TGG 0.306011 5_4:+12096470 Msa0837970:three_prime_UTR
TAACTATTACTCAAAATATA+TGG 0.306286 5_4:+12093119 Msa0837970:five_prime_UTR
ATTGTTTATAATTGTATATA+GGG 0.318157 5_4:+12096301 Msa0837970:three_prime_UTR
TTCTTCCAAACAGTATACTA+TGG 0.324195 5_4:-12095345 None:intergenic
TTTAAAGCTTGCTCAATGTT+TGG 0.324866 5_4:-12096466 None:intergenic
AATAGATAAACTAAACTAAT+AGG 0.330539 5_4:-12094365 None:intergenic
AATCCAAGCAAAAGACTCTT+AGG 0.331299 5_4:-12094567 None:intergenic
GCTGGAGCTGGATGGTATTA+AGG 0.331947 5_4:+12092749 Msa0837970:five_prime_UTR
TGTTAACCTGACAACCATTC+AGG 0.332806 5_4:-12095495 None:intergenic
TTTCAAGCTGTTGCTATAGT+AGG 0.343610 5_4:+12092516 Msa0837970:five_prime_UTR
AAATGGGATAGGAACCCTTT+TGG 0.344416 5_4:+12096616 Msa0837970:three_prime_UTR
TGGTTACACAATCTTTGTTT+TGG 0.347964 5_4:+12093090 Msa0837970:five_prime_UTR
TGGGCTATGTATATTGATTC+TGG 0.348095 5_4:-12096990 None:intergenic
TTGAAGCAAATCAATGTATC+AGG 0.351192 5_4:-12094148 None:intergenic
TGACACTATCAGCGGTTCTT+AGG 0.355127 5_4:-12096696 None:intergenic
CAATCCTTATGTCGATCTTA+AGG 0.363766 5_4:+12094168 Msa0837970:five_prime_UTR
TAAAGAAAGTTGTCTGATAT+TGG 0.364580 5_4:+12096812 Msa0837970:three_prime_UTR
AATAGAAGTATAATATCAAC+TGG 0.365951 5_4:-12096646 None:intergenic
TAAAACTATAGGGTTTGTTT+TGG 0.367070 5_4:+12094292 Msa0837970:intron
AAGTGGTACTTGAATTCCTT+TGG 0.369470 5_4:-12095868 None:intergenic
TGTTGCTCAATGTAAGAGAT+AGG 0.373738 5_4:+12096840 Msa0837970:three_prime_UTR
GGTTAAACCTAAAATGATAA+TGG 0.379506 5_4:+12094119 Msa0837970:intron
TTTGATGGTGTTGAAATTCA+TGG 0.380570 5_4:+12093061 Msa0837970:five_prime_UTR
TCACTTGCACAACTTATTGA+TGG 0.382177 5_4:+12093558 Msa0837970:five_prime_UTR
GGTGATTCATGTTTGTTGTC+TGG 0.397207 5_4:+12094313 Msa0837970:five_prime_UTR
ATGCAAATGATGCTAGAGTT+AGG 0.399528 5_4:+12096965 Msa0837970:three_prime_UTR
TTCAAAGCTGTTGGTGGTGT+TGG 0.407418 5_4:+12095943 Msa0837970:CDS
GCCTTGGATGTGGCTGTCAA+TGG 0.409273 5_4:+12092668 Msa0837970:five_prime_UTR
CTTCCGAAGGTGGTAATATC+CGG 0.410799 5_4:+12096503 Msa0837970:three_prime_UTR
AGATGCACAATTCAGACAAA+TGG 0.411402 5_4:-12096572 None:intergenic
TCGCTGTAATTTATGAATTG+AGG 0.414984 5_4:+12093145 Msa0837970:five_prime_UTR
GCATATTTGCAATTATTGAT+TGG 0.415200 5_4:+12096191 Msa0837970:CDS
GTTGCTTATGAGGAAATTGC+TGG 0.415619 5_4:+12092731 Msa0837970:five_prime_UTR
AACAATCTAAAGAGGAATAT+AGG 0.417865 5_4:+12095514 Msa0837970:five_prime_UTR
AAGGACATGATGATATCTAT+TGG 0.424202 5_4:+12094187 Msa0837970:five_prime_UTR
CCCACGCATAACCAGAAAAC+TGG 0.424594 5_4:-12095537 None:intergenic
AATAGCAGCAGAGGTGTTAG+AGG 0.426122 5_4:-12095472 None:intergenic
ATGCTCCATAGTATACTGTT+TGG 0.429978 5_4:+12095340 Msa0837970:five_prime_UTR
ATTGTTGTATTTCTATATAG+TGG 0.437984 5_4:+12095210 Msa0837970:intron
GCTATTCCTGAATGGTTGTC+AGG 0.440811 5_4:+12095489 Msa0837970:five_prime_UTR
TGACTACAGAGTTGCTTATG+AGG 0.441095 5_4:+12092721 Msa0837970:five_prime_UTR
GTATTAGTTTATCCTTAGAA+TGG 0.441788 5_4:+12096374 Msa0837970:three_prime_UTR
GTAATGTGTCGGCTCTTTGT+TGG 0.450714 5_4:+12096236 Msa0837970:three_prime_UTR
TACACTTGAAACTTAAAAGA+AGG 0.456449 5_4:+12093493 Msa0837970:five_prime_UTR
TAATGTGTCGGCTCTTTGTT+GGG 0.460399 5_4:+12096237 Msa0837970:three_prime_UTR
GCTCTCTGTCTTCATCGAGC+TGG 0.461866 5_4:+12096541 Msa0837970:three_prime_UTR
AGCCCGGATATTACCACCTT+CGG 0.468882 5_4:-12096506 None:intergenic
GCAGGTGTTGGCCTTGGATG+TGG 0.469671 5_4:+12092658 Msa0837970:intron
TTTGATGAAGCTCTCTGGAA+TGG 0.471933 5_4:+12093880 Msa0837970:five_prime_UTR
CGGCCAAGGTTGCGATTTGA+CGG 0.472968 5_4:+12093963 Msa0837970:five_prime_UTR
AGCATATGCAGGTTGCCATC+AGG 0.476906 5_4:-12095322 None:intergenic
AATGAAAATACGACGGCTCA+TGG 0.476933 5_4:+12093924 Msa0837970:five_prime_UTR
TGATTATAATAGCTTGGAAC+AGG 0.479418 5_4:+12096021 Msa0837970:CDS
AAAGCTTGCTCAATGTTTGG+AGG 0.482572 5_4:-12096463 None:intergenic
TTCCAGAGAGCTTCATCAAA+AGG 0.482583 5_4:-12093877 None:intergenic
TCAACTGGGTCATTCCCAAA+AGG 0.485241 5_4:-12096631 None:intergenic
GGGTTGGCAGCTAATGTCAT+TGG 0.491101 5_4:+12093800 Msa0837970:intron
TGCAAATGATGCTAGAGTTA+GGG 0.491594 5_4:+12096966 Msa0837970:three_prime_UTR
AAAACAGAGAACAAGGGTAA+AGG 0.493647 5_4:+12095732 Msa0837970:five_prime_UTR
TATGAGGAAATTGCTGGAGC+TGG 0.493825 5_4:+12092737 Msa0837970:five_prime_UTR
TTGGATGTGGCTGTCAATGG+AGG 0.496098 5_4:+12092671 Msa0837970:five_prime_UTR
GATGCACAATTCAGACAAAT+GGG 0.510623 5_4:-12096571 None:intergenic
AGGTGGACAAGCTTTGTGAC+AGG 0.514120 5_4:+12092544 Msa0837970:five_prime_UTR
TTGTAGGTGTCAAATGGGAT+AGG 0.525081 5_4:+12096605 Msa0837970:three_prime_UTR
CAACTGGGTCATTCCCAAAA+GGG 0.525279 5_4:-12096630 None:intergenic
ATAAGTCTAATTTCTGACTA+CGG 0.526831 5_4:+12093852 Msa0837970:five_prime_UTR
TTGGCAGCTAATGTCATTGG+AGG 0.532459 5_4:+12093803 Msa0837970:intron
CACTTCTGCTGAAAAGATGA+AGG 0.537639 5_4:+12096729 Msa0837970:three_prime_UTR
GAGCAAGTTGGTACTGAGCC+CGG 0.541737 5_4:-12096522 None:intergenic
GTATACTATGGAGCATATGC+AGG 0.541768 5_4:-12095333 None:intergenic
AGTTTATCCTTAGAATGGAA+TGG 0.543581 5_4:+12096379 Msa0837970:three_prime_UTR
GGAACTGTCTTCAAAGCTGT+TGG 0.544546 5_4:+12095934 Msa0837970:CDS
ACCTCCTCTACAGAAGGAGC+GGG 0.546730 5_4:-12092152 None:intergenic
CCTCTGCTGCTATTCCTGAA+TGG 0.549405 5_4:+12095481 Msa0837970:five_prime_UTR
GAAGAAAGCGATTCTGGTGA+AGG 0.550875 5_4:+12093273 Msa0837970:five_prime_UTR
TTCCGAAGGTGGTAATATCC+GGG 0.554811 5_4:+12096504 Msa0837970:three_prime_UTR
AGGTGATGATTATAATAGCT+TGG 0.556853 5_4:+12096015 Msa0837970:CDS
AGATAAACTAAACTAATAGG+AGG 0.557735 5_4:-12094362 None:intergenic
GAAAATGTGTCTCACGGCCA+AGG 0.559670 5_4:+12093949 Msa0837970:five_prime_UTR
ACAACTTTCTTTACGCGCCA+CGG 0.560682 5_4:-12096802 None:intergenic
AACAGCTAATGAAAAGACTC+TGG 0.561222 5_4:+12092129 Msa0837970:five_prime_UTR
GTCAGGTTAACAATCTAAAG+AGG 0.562124 5_4:+12095506 Msa0837970:five_prime_UTR
ATGTCCTTAAGATCGACATA+AGG 0.562412 5_4:-12094172 None:intergenic
ATTAGGTGAAAATGATTGCA+TGG 0.564453 5_4:+12096152 Msa0837970:intron
GAAAATGATTGCATGGCTGA+TGG 0.566342 5_4:+12096159 Msa0837970:CDS
ACTGTCTTCAAAGCTGTTGG+TGG 0.576536 5_4:+12095937 Msa0837970:CDS
CAAATAACATTGTGTCCACC+AGG 0.577263 5_4:-12094513 None:intergenic
AACAAATCATTAACAACACA+AGG 0.579326 5_4:-12093212 None:intergenic
TTGTGAATCTTGTGAGCAGA+GGG 0.580456 5_4:-12094543 None:intergenic
GCACATGAGTTATCTGAAGT+AGG 0.583438 5_4:-12093403 None:intergenic
GTTGAAATTCATGGAGCTCA+TGG 0.586021 5_4:+12093070 Msa0837970:five_prime_UTR
CTGGCCCGCTCCTTCTGTAG+AGG 0.588206 5_4:+12092148 Msa0837970:five_prime_UTR
AACCTAAAATGATAATGGCA+AGG 0.590419 5_4:+12094124 Msa0837970:five_prime_UTR
GGTGGACACAATGTTATTTG+GGG 0.591154 5_4:+12094516 Msa0837970:five_prime_UTR
AAAATGATTGCATGGCTGAT+GGG 0.591373 5_4:+12096160 Msa0837970:CDS
ATGCAGAAAAGAGGGACGAT+GGG 0.592911 5_4:-12093335 None:intergenic
CTATATACAATTATAAACAA+TGG 0.593227 5_4:-12096299 None:intergenic
CATGCAGAAAAGAGGGACGA+TGG 0.594275 5_4:-12093336 None:intergenic
AGCGATTCTGGTGAAGGTGT+CGG 0.594655 5_4:+12093279 Msa0837970:five_prime_UTR
TTACCGTCAAATCGCAACCT+TGG 0.595041 5_4:-12093966 None:intergenic
GATATTACCTCCTCTACAGA+AGG 0.596493 5_4:-12092158 None:intergenic
TTAAGGCTGAAGGTGAAGCT+AGG 0.598267 5_4:+12092766 Msa0837970:five_prime_UTR
TAGATGACATTGTAATGTGT+CGG 0.598274 5_4:+12096225 Msa0837970:three_prime_UTR
GGTGGACAAGCTTTGTGACA+GGG 0.600958 5_4:+12092545 Msa0837970:five_prime_UTR
TGGATGTGGCTGTCAATGGA+GGG 0.601202 5_4:+12092672 Msa0837970:five_prime_UTR
TTGTTGTAATATGTTTCCAA+TGG 0.601808 5_4:+12093230 Msa0837970:five_prime_UTR
AAACAAGAGTAGTGTGAACA+AGG 0.602527 5_4:+12095819 Msa0837970:five_prime_UTR
GCCCGCTCCTTCTGTAGAGG+AGG 0.602936 5_4:+12092151 Msa0837970:five_prime_UTR
TTGTATAAAGCTTCCGAAGG+TGG 0.604312 5_4:+12096493 Msa0837970:three_prime_UTR
CTGGATGGTATTAAGGCTGA+AGG 0.605506 5_4:+12092756 Msa0837970:five_prime_UTR
GATAAACTAAACTAATAGGA+GGG 0.607158 5_4:-12094361 None:intergenic
TACCTCCTCTACAGAAGGAG+CGG 0.611829 5_4:-12092153 None:intergenic
AGGAAATTGCTGGAGCTGGA+TGG 0.613422 5_4:+12092741 Msa0837970:five_prime_UTR
GAGGCTCAACTGCATAGCAT+AGG 0.621630 5_4:-12096444 None:intergenic
TCATGTGCGATATTTGGTGT+GGG 0.623426 5_4:+12093418 Msa0837970:five_prime_UTR
AGAGAACAAGGGTAAAGGAG+AGG 0.625869 5_4:+12095737 Msa0837970:five_prime_UTR
ATGGCGGAAAATGTGTCTCA+CGG 0.626613 5_4:+12093943 Msa0837970:five_prime_UTR
GGCTGTCAATGGAGGGACCA+CGG 0.626800 5_4:+12092679 Msa0837970:five_prime_UTR
TGCTATAGTAGGATCAGAGG+TGG 0.626914 5_4:+12092527 Msa0837970:five_prime_UTR
TCCATTGACAGCCACATCCA+AGG 0.628433 5_4:-12092669 None:intergenic
CCATTCAGGAATAGCAGCAG+AGG 0.628824 5_4:-12095481 None:intergenic
TTATGCGTGGGCTGAAAATG+AGG 0.637872 5_4:+12095549 Msa0837970:five_prime_UTR
TGGTGAAGGTGTCGGCGGAG+AGG 0.640871 5_4:+12093287 Msa0837970:five_prime_UTR
TGTTGCTATAGTAGGATCAG+AGG 0.641459 5_4:+12092524 Msa0837970:five_prime_UTR
CTCATGTGCGATATTTGGTG+TGG 0.643646 5_4:+12093417 Msa0837970:five_prime_UTR
ATAAATTCTGTCAGAAACCG+TGG 0.644982 5_4:-12092696 None:intergenic
TAGGTTGCAGAGAAAAGCTG+AGG 0.646000 5_4:+12092785 Msa0837970:five_prime_UTR
ATTGTGAATCTTGTGAGCAG+AGG 0.647355 5_4:-12094544 None:intergenic
GATGAAGACAGAGAGCAAGT+TGG 0.666498 5_4:-12096534 None:intergenic
TGGTTGTATAAAGCTTCCGA+AGG 0.667521 5_4:+12096490 Msa0837970:three_prime_UTR
TTGTCAAAGAGAAAACCTGA+TGG 0.669312 5_4:+12095307 Msa0837970:five_prime_UTR
ACAAATCATTAACAACACAA+GGG 0.670286 5_4:-12093211 None:intergenic
TGATAGTTTATGTCTAACAA+AGG 0.675453 5_4:+12096417 Msa0837970:three_prime_UTR
ATACTTAAATGAAAATACGA+CGG 0.677422 5_4:+12093917 Msa0837970:five_prime_UTR
TACTGTTTGGAAGAAAACAA+AGG 0.678355 5_4:+12095353 Msa0837970:five_prime_UTR
GATTCTGGTGAAGGTGTCGG+CGG 0.682855 5_4:+12093282 Msa0837970:five_prime_UTR
CATGCATATGACACTATCAG+CGG 0.691166 5_4:-12096704 None:intergenic
GAAAATACGACGGCTCATGG+CGG 0.694524 5_4:+12093927 Msa0837970:five_prime_UTR
ATAGAAGTATAATATCAACT+GGG 0.754814 5_4:-12096645 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATGATAATGTTTTATTTA+GGG + chr5_4:12092469-12092488 Msa0837970:intron 10.0%
!!! GTTATTTTAAAAAAAAACTA+TGG + chr5_4:12094817-12094836 Msa0837970:intron 10.0%
!! ATTGTTTATAATTGTATATA+GGG + chr5_4:12096301-12096320 Msa0837970:three_prime_UTR 10.0%
!!! ATATTTTGTATTAAGATTTT+TGG + chr5_4:12096768-12096787 Msa0837970:three_prime_UTR 10.0%
!!! GTAATGATAATGTTTTATTT+AGG + chr5_4:12092468-12092487 Msa0837970:intron 15.0%
!! TAACTATTACTCAAAATATA+TGG + chr5_4:12093119-12093138 Msa0837970:five_prime_UTR 15.0%
!! AATAGATAAACTAAACTAAT+AGG - chr5_4:12094368-12094387 None:intergenic 15.0%
!!! TTAAAAAAAAACTATGGTTT+TGG + chr5_4:12094823-12094842 Msa0837970:intron 15.0%
!!! TTTGGTTGATAAAAAATTTA+TGG + chr5_4:12095029-12095048 Msa0837970:intron 15.0%
!!! ATTATATGTATCATGAATTT+TGG - chr5_4:12095148-12095167 None:intergenic 15.0%
!!! AAACATTCAAATTTTTCATT+AGG + chr5_4:12096135-12096154 Msa0837970:intron 15.0%
!! CTATATACAATTATAAACAA+TGG - chr5_4:12096302-12096321 None:intergenic 15.0%
!! CATTGTTTATAATTGTATAT+AGG + chr5_4:12096300-12096319 Msa0837970:three_prime_UTR 15.0%
!! ATATCAATAATCATCTGTTT+AGG + chr5_4:12092176-12092195 Msa0837970:intron 20.0%
!! TATCAATAATCATCTGTTTA+GGG + chr5_4:12092177-12092196 Msa0837970:intron 20.0%
!!! AAAATGTTTTAACAAAACCA+TGG - chr5_4:12092499-12092518 None:intergenic 20.0%
!! TAATAATAATATGGGAAACA+TGG - chr5_4:12092575-12092594 None:intergenic 20.0%
!!! TTTAATACCATGATTTTGTT+TGG - chr5_4:12092907-12092926 None:intergenic 20.0%
!! GGGTTGTTAAAAATTAAAAA+TGG + chr5_4:12092968-12092987 Msa0837970:intron 20.0%
!! AAAAATTAAAAATGGAGTGT+TGG + chr5_4:12092976-12092995 Msa0837970:intron 20.0%
!! TCTTAAAATAAGAATCAGAA+AGG + chr5_4:12093630-12093649 Msa0837970:intron 20.0%
!! ATACTTAAATGAAAATACGA+CGG + chr5_4:12093917-12093936 Msa0837970:five_prime_UTR 20.0%
!!! TACATAGTTCTTTAAAAACA+TGG - chr5_4:12094727-12094746 None:intergenic 20.0%
!!! TAAAATGTCGTTCAAATTTT+CGG - chr5_4:12095005-12095024 None:intergenic 20.0%
!!! GTTGATAACATAAAAATTGA+AGG + chr5_4:12095080-12095099 Msa0837970:intron 20.0%
!!! CTCATAAATTTTATGTATCA+TGG - chr5_4:12095171-12095190 None:intergenic 20.0%
!! CATGATACATAAAATTTATG+AGG + chr5_4:12095169-12095188 Msa0837970:intron 20.0%
!!! ATTGTTGTATTTCTATATAG+TGG + chr5_4:12095210-12095229 Msa0837970:intron 20.0%
!!! TATATCATTTTTGAATCCAA+AGG + chr5_4:12095852-12095871 Msa0837970:five_prime_UTR 20.0%
!!! TTTATTTACCATTTTAGAAG+TGG - chr5_4:12095888-12095907 None:intergenic 20.0%
!! ACAAGAAAGTTTACAAAAAT+AGG + chr5_4:12095995-12096014 Msa0837970:CDS 20.0%
!! CTATCTCTAATTATTCAAAA+AGG + chr5_4:12096047-12096066 Msa0837970:intron 20.0%
!!! ATAGAAGTATAATATCAACT+GGG - chr5_4:12096648-12096667 None:intergenic 20.0%
!!! AATAGAAGTATAATATCAAC+TGG - chr5_4:12096649-12096668 None:intergenic 20.0%
!!! CCTTAAAATTTCTTTTCATA+GGG - chr5_4:12096929-12096948 None:intergenic 20.0%
!!! ACCTTAAAATTTCTTTTCAT+AGG - chr5_4:12096930-12096949 None:intergenic 20.0%
! TTTCTTCTCATGTGTTTATT+TGG - chr5_4:12092324-12092343 None:intergenic 25.0%
!!! CAAAATGATTTTCTGAAAGT+TGG + chr5_4:12092368-12092387 Msa0837970:intron 25.0%
!!! ATTACTGATTGTAATTTTGC+AGG + chr5_4:12092640-12092659 Msa0837970:intron 25.0%
!!! TTTCGAACTTTTTGAGTTTT+TGG + chr5_4:12092940-12092959 Msa0837970:intron 25.0%
!!! TTTTTGAGTTTTTGGAATCT+GGG + chr5_4:12092948-12092967 Msa0837970:intron 25.0%
!!! GTTTTGAATTTGTTTGACTT+TGG + chr5_4:12093167-12093186 Msa0837970:five_prime_UTR 25.0%
! ACAAATCATTAACAACACAA+GGG - chr5_4:12093214-12093233 None:intergenic 25.0%
! AACAAATCATTAACAACACA+AGG - chr5_4:12093215-12093234 None:intergenic 25.0%
! TTGTTGTAATATGTTTCCAA+TGG + chr5_4:12093230-12093249 Msa0837970:five_prime_UTR 25.0%
!!! AACGAAAATATTTTGACCAT+TGG - chr5_4:12093249-12093268 None:intergenic 25.0%
! AAGTAGGAAAACACATAAAT+AGG - chr5_4:12093390-12093409 None:intergenic 25.0%
! TACACTTGAAACTTAAAAGA+AGG + chr5_4:12093493-12093512 Msa0837970:five_prime_UTR 25.0%
! ATAAGAATCAGAAAGGTTTA+TGG + chr5_4:12093637-12093656 Msa0837970:intron 25.0%
!! ATTTATTGAATGCATTTTGC+AGG + chr5_4:12093704-12093723 Msa0837970:intron 25.0%
! ATAAGTCTAATTTCTGACTA+CGG + chr5_4:12093852-12093871 Msa0837970:five_prime_UTR 25.0%
!!! GTTAAGTTTTTTACTGCTAT+GGG + chr5_4:12094054-12094073 Msa0837970:intron 25.0%
! GGTTAAACCTAAAATGATAA+TGG + chr5_4:12094119-12094138 Msa0837970:intron 25.0%
!!! TAAAACTATAGGGTTTGTTT+TGG + chr5_4:12094292-12094311 Msa0837970:intron 25.0%
! GATAAACTAAACTAATAGGA+GGG - chr5_4:12094364-12094383 None:intergenic 25.0%
! AGATAAACTAAACTAATAGG+AGG - chr5_4:12094365-12094384 None:intergenic 25.0%
!!! TTTTTTTTAAGACAATCTCC+TGG + chr5_4:12094495-12094514 Msa0837970:five_prime_UTR 25.0%
! AGCAATTAACAAACTAAGTT+AGG - chr5_4:12094616-12094635 None:intergenic 25.0%
!!! CTTTAAAAACATGGCAATTT+TGG - chr5_4:12094718-12094737 None:intergenic 25.0%
! TTTAAAGAACTATGTATGCT+TGG + chr5_4:12094731-12094750 Msa0837970:intron 25.0%
!!! AATAACGGTAATTTTAGTCT+TGG - chr5_4:12094803-12094822 None:intergenic 25.0%
!!! AATGACTTTTTTTAGTGTAC+AGG + chr5_4:12094962-12094981 Msa0837970:intron 25.0%
!! TTTATGGCAAGAATTCTTTT+TGG + chr5_4:12095045-12095064 Msa0837970:intron 25.0%
!! TTATGGCAAGAATTCTTTTT+GGG + chr5_4:12095046-12095065 Msa0837970:intron 25.0%
! AACAATCTAAAGAGGAATAT+AGG + chr5_4:12095514-12095533 Msa0837970:five_prime_UTR 25.0%
!!! TAACAAAACATGTTTTCAAG+AGG + chr5_4:12095913-12095932 Msa0837970:CDS 25.0%
! AAGAGCTTAATGTCAAAAAT+GGG - chr5_4:12096074-12096093 None:intergenic 25.0%
! TAAGAGCTTAATGTCAAAAA+TGG - chr5_4:12096075-12096094 None:intergenic 25.0%
! GCATATTTGCAATTATTGAT+TGG + chr5_4:12096191-12096210 Msa0837970:CDS 25.0%
!! GTATTAGTTTATCCTTAGAA+TGG + chr5_4:12096374-12096393 Msa0837970:three_prime_UTR 25.0%
! TGATAGTTTATGTCTAACAA+AGG + chr5_4:12096417-12096436 Msa0837970:three_prime_UTR 25.0%
!!! TTAAGATTTTTGGTCTTTCA+CGG + chr5_4:12096778-12096797 Msa0837970:three_prime_UTR 25.0%
! TAAAGAAAGTTGTCTGATAT+TGG + chr5_4:12096812-12096831 Msa0837970:three_prime_UTR 25.0%
!! CCCTATGAAAAGAAATTTTA+AGG + chr5_4:12096926-12096945 Msa0837970:three_prime_UTR 25.0%
! AGCAAGTTATTAGCTTAAGA+AGG - chr5_4:12092405-12092424 None:intergenic 30.0%
AAAAGCTGAGGTAATGTTTA+TGG + chr5_4:12092797-12092816 Msa0837970:intron 30.0%
!! GATTTTGTTTGGCACATATA+TGG - chr5_4:12092896-12092915 None:intergenic 30.0%
ATATGTGCCAAACAAAATCA+TGG + chr5_4:12092897-12092916 Msa0837970:intron 30.0%
!!! CTTTTTGAGTTTTTGGAATC+TGG + chr5_4:12092947-12092966 Msa0837970:intron 30.0%
!! TTTGATGGTGTTGAAATTCA+TGG + chr5_4:12093061-12093080 Msa0837970:five_prime_UTR 30.0%
!! TGGTTACACAATCTTTGTTT+TGG + chr5_4:12093090-12093109 Msa0837970:five_prime_UTR 30.0%
TCGCTGTAATTTATGAATTG+AGG + chr5_4:12093145-12093164 Msa0837970:five_prime_UTR 30.0%
! CACAACTTATTGATGGTATT+TGG + chr5_4:12093565-12093584 Msa0837970:intron 30.0%
AATATGAAGAGCAGGAAATA+AGG - chr5_4:12094016-12094035 None:intergenic 30.0%
GTAAAAAACTTAACCATCAC+AGG - chr5_4:12094048-12094067 None:intergenic 30.0%
!!! GGTTAAGTTTTTTACTGCTA+TGG + chr5_4:12094053-12094072 Msa0837970:intron 30.0%
CATACTAATTTCCCTAGATT+GGG + chr5_4:12094085-12094104 Msa0837970:intron 30.0%
TTTCATAATCACCCAATCTA+GGG - chr5_4:12094099-12094118 None:intergenic 30.0%
!! AACCTAAAATGATAATGGCA+AGG + chr5_4:12094124-12094143 Msa0837970:five_prime_UTR 30.0%
TTGAAGCAAATCAATGTATC+AGG - chr5_4:12094151-12094170 None:intergenic 30.0%
AAGGACATGATGATATCTAT+TGG + chr5_4:12094187-12094206 Msa0837970:five_prime_UTR 30.0%
!! ACTCATGTCTCTAAAACTAT+AGG + chr5_4:12094281-12094300 Msa0837970:intron 30.0%
!! CTCATGTCTCTAAAACTATA+GGG + chr5_4:12094282-12094301 Msa0837970:intron 30.0%
!!! AAAAAAACTATGGTTTTGGC+TGG + chr5_4:12094827-12094846 Msa0837970:intron 30.0%
TTCAAAAGTAACTGCATGTT+AGG - chr5_4:12094943-12094962 None:intergenic 30.0%
! TGAACGACATTTTATGACTT+TGG + chr5_4:12095011-12095030 Msa0837970:intron 30.0%
!!! TTCTTTTTGGGTAAAGTCTT+TGG + chr5_4:12095058-12095077 Msa0837970:intron 30.0%
AACTATATTAGACAACACTG+AGG - chr5_4:12095254-12095273 None:intergenic 30.0%
TTATGTGTAAACTGTTTCAG+TGG + chr5_4:12095276-12095295 Msa0837970:intron 30.0%
TTCTTCCAAACAGTATACTA+TGG - chr5_4:12095348-12095367 None:intergenic 30.0%
TACTGTTTGGAAGAAAACAA+AGG + chr5_4:12095353-12095372 Msa0837970:five_prime_UTR 30.0%
ATAATATGTCAGCAAAAACC+TGG - chr5_4:12095425-12095444 None:intergenic 30.0%
TAGATATGAATCTTTGTGAG+TGG + chr5_4:12095610-12095629 Msa0837970:intron 30.0%
GAAGATGTAGATTTAATTGC+AGG - chr5_4:12095696-12095715 None:intergenic 30.0%
ATCTACATCTTCACAACTAT+TGG + chr5_4:12095704-12095723 Msa0837970:intron 30.0%
! TTCACACTACTCTTGTTTAT+TGG - chr5_4:12095817-12095836 None:intergenic 30.0%
! TTCAAGTACCACTTCTAAAA+TGG + chr5_4:12095877-12095896 Msa0837970:exon 30.0%
AGGTGATGATTATAATAGCT+TGG + chr5_4:12096015-12096034 Msa0837970:CDS 30.0%
TGATTATAATAGCTTGGAAC+AGG + chr5_4:12096021-12096040 Msa0837970:CDS 30.0%
TATGACAAACAACAATGTTC+AGG + chr5_4:12096097-12096116 Msa0837970:intron 30.0%
TGTTCAGGTCTTGAATAATT+TGG + chr5_4:12096112-12096131 Msa0837970:intron 30.0%
ATTAGGTGAAAATGATTGCA+TGG + chr5_4:12096152-12096171 Msa0837970:intron 30.0%
TAGATGACATTGTAATGTGT+CGG + chr5_4:12096225-12096244 Msa0837970:three_prime_UTR 30.0%
AGTTTATCCTTAGAATGGAA+TGG + chr5_4:12096379-12096398 Msa0837970:three_prime_UTR 30.0%
! TTCTTTTCCATTCCATTCTA+AGG - chr5_4:12096389-12096408 None:intergenic 30.0%
! TTTAAAGCTTGCTCAATGTT+TGG - chr5_4:12096469-12096488 None:intergenic 30.0%
!! ACATTGAGCAAGCTTTAAAA+TGG + chr5_4:12096470-12096489 Msa0837970:three_prime_UTR 30.0%
! TTGATTTTGTAGGTGTCAAA+TGG + chr5_4:12096599-12096618 Msa0837970:three_prime_UTR 30.0%
! TGATTTTGTAGGTGTCAAAT+GGG + chr5_4:12096600-12096619 Msa0837970:three_prime_UTR 30.0%
AACAGCTAATGAAAAGACTC+TGG + chr5_4:12092129-12092148 Msa0837970:five_prime_UTR 35.0%
TTTCAAGCTGTTGCTATAGT+AGG + chr5_4:12092516-12092535 Msa0837970:five_prime_UTR 35.0%
! GATTGTAATTTTGCAGGTGT+TGG + chr5_4:12092646-12092665 Msa0837970:intron 35.0%
ATAAATTCTGTCAGAAACCG+TGG - chr5_4:12092699-12092718 None:intergenic 35.0%
!! ATGCAAATTGCAGGTTTTGA+TGG + chr5_4:12093046-12093065 Msa0837970:intron 35.0%
!! TTTTGAGAAGAAAGCGATTC+TGG + chr5_4:12093267-12093286 Msa0837970:five_prime_UTR 35.0%
CCAAAAACATGCAGAAAAGA+GGG - chr5_4:12093346-12093365 None:intergenic 35.0%
ACCAAAAACATGCAGAAAAG+AGG - chr5_4:12093347-12093366 None:intergenic 35.0%
GATAACTCATGTGCGATATT+TGG + chr5_4:12093412-12093431 Msa0837970:five_prime_UTR 35.0%
TCACTTGCACAACTTATTGA+TGG + chr5_4:12093558-12093577 Msa0837970:five_prime_UTR 35.0%
TCGAATGACTCCATATGATA+TGG + chr5_4:12093734-12093753 Msa0837970:intron 35.0%
CGAATGACTCCATATGATAT+GGG + chr5_4:12093735-12093754 Msa0837970:intron 35.0%
!!! GTCATTGGAGGTTTTGAATA+TGG + chr5_4:12093815-12093834 Msa0837970:five_prime_UTR 35.0%
TTCCTGCTCTTCATATTGAT+TGG + chr5_4:12094019-12094038 Msa0837970:intron 35.0%
GCATACTAATTTCCCTAGAT+TGG + chr5_4:12094084-12094103 Msa0837970:intron 35.0%
CTTTCATAATCACCCAATCT+AGG - chr5_4:12094100-12094119 None:intergenic 35.0%
CTAGATTGGGTGATTATGAA+AGG + chr5_4:12094098-12094117 Msa0837970:intron 35.0%
! GACCTTGCCATTATCATTTT+AGG - chr5_4:12094129-12094148 None:intergenic 35.0%
CAATCCTTATGTCGATCTTA+AGG + chr5_4:12094168-12094187 Msa0837970:five_prime_UTR 35.0%
ATGTCCTTAAGATCGACATA+AGG - chr5_4:12094175-12094194 None:intergenic 35.0%
!!! TTTTTAAGACAATCTCCTGG+TGG + chr5_4:12094498-12094517 Msa0837970:five_prime_UTR 35.0%
! TGGTGGACACAATGTTATTT+GGG + chr5_4:12094515-12094534 Msa0837970:five_prime_UTR 35.0%
! AATCCTAAGAGTCTTTTGCT+TGG + chr5_4:12094564-12094583 Msa0837970:five_prime_UTR 35.0%
AATCCAAGCAAAAGACTCTT+AGG - chr5_4:12094570-12094589 None:intergenic 35.0%
! AGTCTTTTGCTTGGATTTCT+TGG + chr5_4:12094573-12094592 Msa0837970:five_prime_UTR 35.0%
AGAACTATGTATGCTTGGAT+TGG + chr5_4:12094736-12094755 Msa0837970:intron 35.0%
TGGAACGCGAGAAAATTAAT+TGG - chr5_4:12094783-12094802 None:intergenic 35.0%
TAACTGCATGTTAGGAATCA+CGG - chr5_4:12094935-12094954 None:intergenic 35.0%
!!! TTTTTTTAGTGTACAGGTGC+TGG + chr5_4:12094968-12094987 Msa0837970:intron 35.0%
! TTGAAGGCACAAAACTATGT+TGG + chr5_4:12095096-12095115 Msa0837970:intron 35.0%
TTGTCAAAGAGAAAACCTGA+TGG + chr5_4:12095307-12095326 Msa0837970:five_prime_UTR 35.0%
ATGCTCCATAGTATACTGTT+TGG + chr5_4:12095340-12095359 Msa0837970:five_prime_UTR 35.0%
!!! TTTTTGCTGACTTCCATTTC+TGG + chr5_4:12095399-12095418 Msa0837970:intron 35.0%
GTCAGGTTAACAATCTAAAG+AGG + chr5_4:12095506-12095525 Msa0837970:five_prime_UTR 35.0%
GCAGAAAAAACAGAGAACAA+GGG + chr5_4:12095726-12095745 Msa0837970:intron 35.0%
AAAACAGAGAACAAGGGTAA+AGG + chr5_4:12095732-12095751 Msa0837970:five_prime_UTR 35.0%
AAACAAGAGTAGTGTGAACA+AGG + chr5_4:12095819-12095838 Msa0837970:five_prime_UTR 35.0%
AAGTGGTACTTGAATTCCTT+TGG - chr5_4:12095871-12095890 None:intergenic 35.0%
AAAATGATTGCATGGCTGAT+GGG + chr5_4:12096160-12096179 Msa0837970:CDS 35.0%
GATGCACAATTCAGACAAAT+GGG - chr5_4:12096574-12096593 None:intergenic 35.0%
AGATGCACAATTCAGACAAA+TGG - chr5_4:12096575-12096594 None:intergenic 35.0%
TGTTGCTCAATGTAAGAGAT+AGG + chr5_4:12096840-12096859 Msa0837970:three_prime_UTR 35.0%
ATGCAAATGATGCTAGAGTT+AGG + chr5_4:12096965-12096984 Msa0837970:three_prime_UTR 35.0%
TGCAAATGATGCTAGAGTTA+GGG + chr5_4:12096966-12096985 Msa0837970:three_prime_UTR 35.0%
GATATTACCTCCTCTACAGA+AGG - chr5_4:12092161-12092180 None:intergenic 40.0%
!!! GTTTTATTTAGGGTGAGCCA+TGG + chr5_4:12092479-12092498 Msa0837970:intron 40.0%
TGTTGCTATAGTAGGATCAG+AGG + chr5_4:12092524-12092543 Msa0837970:five_prime_UTR 40.0%
TGACTACAGAGTTGCTTATG+AGG + chr5_4:12092721-12092740 Msa0837970:five_prime_UTR 40.0%
GTTGCTTATGAGGAAATTGC+TGG + chr5_4:12092731-12092750 Msa0837970:five_prime_UTR 40.0%
!! ATGGAGTGTTGGAATAGTGT+TGG + chr5_4:12092987-12093006 Msa0837970:intron 40.0%
CTCAATGTGATGCAAATTGC+AGG + chr5_4:12093037-12093056 Msa0837970:intron 40.0%
GTTGAAATTCATGGAGCTCA+TGG + chr5_4:12093070-12093089 Msa0837970:five_prime_UTR 40.0%
! CCCTCTTTTCTGCATGTTTT+TGG + chr5_4:12093343-12093362 Msa0837970:five_prime_UTR 40.0%
! GCACATGAGTTATCTGAAGT+AGG - chr5_4:12093406-12093425 None:intergenic 40.0%
!! TCATGTGCGATATTTGGTGT+GGG + chr5_4:12093418-12093437 Msa0837970:five_prime_UTR 40.0%
! GAGGCTTTTCCCATATCATA+TGG - chr5_4:12093747-12093766 None:intergenic 40.0%
! CCATTTTCAACACAGACAAG+AGG - chr5_4:12093766-12093785 None:intergenic 40.0%
CCTCTTGTCTGTGTTGAAAA+TGG + chr5_4:12093763-12093782 Msa0837970:intron 40.0%
CTTGTCTGTGTTGAAAATGG+CGG + chr5_4:12093766-12093785 Msa0837970:intron 40.0%
TTCCAGAGAGCTTCATCAAA+AGG - chr5_4:12093880-12093899 None:intergenic 40.0%
! TTTGATGAAGCTCTCTGGAA+TGG + chr5_4:12093880-12093899 Msa0837970:five_prime_UTR 40.0%
AATGAAAATACGACGGCTCA+TGG + chr5_4:12093924-12093943 Msa0837970:five_prime_UTR 40.0%
CACCAATCAATATGAAGAGC+AGG - chr5_4:12094024-12094043 None:intergenic 40.0%
! TATTGATTGGTGACCTGTGA+TGG + chr5_4:12094032-12094051 Msa0837970:intron 40.0%
!! GGTGATTCATGTTTGTTGTC+TGG + chr5_4:12094313-12094332 Msa0837970:five_prime_UTR 40.0%
!! TCTCACAAGTTTGTTGTCAC+AGG + chr5_4:12094457-12094476 Msa0837970:intron 40.0%
!! CTCACAAGTTTGTTGTCACA+GGG + chr5_4:12094458-12094477 Msa0837970:intron 40.0%
CAAATAACATTGTGTCCACC+AGG - chr5_4:12094516-12094535 None:intergenic 40.0%
! CTGGTGGACACAATGTTATT+TGG + chr5_4:12094514-12094533 Msa0837970:five_prime_UTR 40.0%
! GGTGGACACAATGTTATTTG+GGG + chr5_4:12094516-12094535 Msa0837970:five_prime_UTR 40.0%
TTGTGAATCTTGTGAGCAGA+GGG - chr5_4:12094546-12094565 None:intergenic 40.0%
ATTGTGAATCTTGTGAGCAG+AGG - chr5_4:12094547-12094566 None:intergenic 40.0%
! ACTATGTATGCTTGGATTGG+CGG + chr5_4:12094739-12094758 Msa0837970:intron 40.0%
!!! AAAACTATGGTTTTGGCTGG+CGG + chr5_4:12094830-12094849 Msa0837970:intron 40.0%
! GCAGTGAACCATTGTGATTT+TGG + chr5_4:12094864-12094883 Msa0837970:intron 40.0%
GTATACTATGGAGCATATGC+AGG - chr5_4:12095336-12095355 None:intergenic 40.0%
GAAAACAAAGGTGATGTTGC+TGG + chr5_4:12095365-12095384 Msa0837970:intron 40.0%
TGTTAACCTGACAACCATTC+AGG - chr5_4:12095498-12095517 None:intergenic 40.0%
! AGGAATATAGGCCAGTTTTC+TGG + chr5_4:12095526-12095545 Msa0837970:five_prime_UTR 40.0%
ACATGATGATCTGATCCGTA+TGG + chr5_4:12095660-12095679 Msa0837970:intron 40.0%
GCAGGTTTATATCAGCCATA+CGG - chr5_4:12095678-12095697 None:intergenic 40.0%
GGCAGAAAAAACAGAGAACA+AGG + chr5_4:12095725-12095744 Msa0837970:intron 40.0%
GAAAATGATTGCATGGCTGA+TGG + chr5_4:12096159-12096178 Msa0837970:CDS 40.0%
!! TAATGTGTCGGCTCTTTGTT+GGG + chr5_4:12096237-12096256 Msa0837970:three_prime_UTR 40.0%
! AAAGCTTGCTCAATGTTTGG+AGG - chr5_4:12096466-12096485 None:intergenic 40.0%
TGGTTGTATAAAGCTTCCGA+AGG + chr5_4:12096490-12096509 Msa0837970:three_prime_UTR 40.0%
TTGTATAAAGCTTCCGAAGG+TGG + chr5_4:12096493-12096512 Msa0837970:three_prime_UTR 40.0%
! GCATCTCTGCTTGATTTTGT+AGG + chr5_4:12096589-12096608 Msa0837970:three_prime_UTR 40.0%
TTGTAGGTGTCAAATGGGAT+AGG + chr5_4:12096605-12096624 Msa0837970:three_prime_UTR 40.0%
! AAATGGGATAGGAACCCTTT+TGG + chr5_4:12096616-12096635 Msa0837970:three_prime_UTR 40.0%
! AATGGGATAGGAACCCTTTT+GGG + chr5_4:12096617-12096636 Msa0837970:three_prime_UTR 40.0%
CATGCATATGACACTATCAG+CGG - chr5_4:12096707-12096726 None:intergenic 40.0%
CACTTCTGCTGAAAAGATGA+AGG + chr5_4:12096729-12096748 Msa0837970:three_prime_UTR 40.0%
TGCTATAGTAGGATCAGAGG+TGG + chr5_4:12092527-12092546 Msa0837970:five_prime_UTR 45.0%
!!! AATTTTGCAGGTGTTGGCCT+TGG + chr5_4:12092652-12092671 Msa0837970:intron 45.0%
TATGAGGAAATTGCTGGAGC+TGG + chr5_4:12092737-12092756 Msa0837970:five_prime_UTR 45.0%
CTGGATGGTATTAAGGCTGA+AGG + chr5_4:12092756-12092775 Msa0837970:five_prime_UTR 45.0%
TTAAGGCTGAAGGTGAAGCT+AGG + chr5_4:12092766-12092785 Msa0837970:five_prime_UTR 45.0%
TAGGTTGCAGAGAAAAGCTG+AGG + chr5_4:12092785-12092804 Msa0837970:five_prime_UTR 45.0%
!! GAGTGTTGGAATAGTGTTGG+TGG + chr5_4:12092990-12093009 Msa0837970:intron 45.0%
GAAGAAAGCGATTCTGGTGA+AGG + chr5_4:12093273-12093292 Msa0837970:five_prime_UTR 45.0%
ATGCAGAAAAGAGGGACGAT+GGG - chr5_4:12093338-12093357 None:intergenic 45.0%
! CTCATGTGCGATATTTGGTG+TGG + chr5_4:12093417-12093436 Msa0837970:five_prime_UTR 45.0%
AAAATGGCGGTCATGCTTGA+AGG + chr5_4:12093779-12093798 Msa0837970:intron 45.0%
AAATGGCGGTCATGCTTGAA+GGG + chr5_4:12093780-12093799 Msa0837970:intron 45.0%
TTGGCAGCTAATGTCATTGG+AGG + chr5_4:12093803-12093822 Msa0837970:intron 45.0%
! AGCCTTTTGATGAAGCTCTC+TGG + chr5_4:12093875-12093894 Msa0837970:five_prime_UTR 45.0%
! ATGGCGGAAAATGTGTCTCA+CGG + chr5_4:12093943-12093962 Msa0837970:five_prime_UTR 45.0%
TTACCGTCAAATCGCAACCT+TGG - chr5_4:12093969-12093988 None:intergenic 45.0%
!! CAAGTTTGTTGTCACAGGGT+TGG + chr5_4:12094462-12094481 Msa0837970:intron 45.0%
!! AGCGTTGGCCAAAATCACAA+TGG - chr5_4:12094875-12094894 None:intergenic 45.0%
! TTTTGGCCAACGCTACACTT+TGG + chr5_4:12094881-12094900 Msa0837970:intron 45.0%
TAAGCTCCAAAGTGTAGCGT+TGG - chr5_4:12094890-12094909 None:intergenic 45.0%
AGGAATCACGGTGAGTTTCA+CGG - chr5_4:12094923-12094942 None:intergenic 45.0%
AGCAAAAACCTGGCCAGAAA+TGG - chr5_4:12095415-12095434 None:intergenic 45.0%
!! AATAGCAGCAGAGGTGTTAG+AGG - chr5_4:12095475-12095494 None:intergenic 45.0%
GCTATTCCTGAATGGTTGTC+AGG + chr5_4:12095489-12095508 Msa0837970:five_prime_UTR 45.0%
!!! CCAGTTTTCTGGTTATGCGT+GGG + chr5_4:12095537-12095556 Msa0837970:five_prime_UTR 45.0%
! TTATGCGTGGGCTGAAAATG+AGG + chr5_4:12095549-12095568 Msa0837970:five_prime_UTR 45.0%
AGAGAACAAGGGTAAAGGAG+AGG + chr5_4:12095737-12095756 Msa0837970:five_prime_UTR 45.0%
GGAACTGTCTTCAAAGCTGT+TGG + chr5_4:12095934-12095953 Msa0837970:CDS 45.0%
ACTGTCTTCAAAGCTGTTGG+TGG + chr5_4:12095937-12095956 Msa0837970:CDS 45.0%
!! TTCAAAGCTGTTGGTGGTGT+TGG + chr5_4:12095943-12095962 Msa0837970:CDS 45.0%
!! GTAATGTGTCGGCTCTTTGT+TGG + chr5_4:12096236-12096255 Msa0837970:three_prime_UTR 45.0%
CTTCCGAAGGTGGTAATATC+CGG + chr5_4:12096503-12096522 Msa0837970:three_prime_UTR 45.0%
TTCCGAAGGTGGTAATATCC+GGG + chr5_4:12096504-12096523 Msa0837970:three_prime_UTR 45.0%
GATGAAGACAGAGAGCAAGT+TGG - chr5_4:12096537-12096556 None:intergenic 45.0%
CAACTGGGTCATTCCCAAAA+GGG - chr5_4:12096633-12096652 None:intergenic 45.0%
TCAACTGGGTCATTCCCAAA+AGG - chr5_4:12096634-12096653 None:intergenic 45.0%
TGACACTATCAGCGGTTCTT+AGG - chr5_4:12096699-12096718 None:intergenic 45.0%
ACAACTTTCTTTACGCGCCA+CGG - chr5_4:12096805-12096824 None:intergenic 45.0%
!! ATGAATAATAATAATAATAT+GGG - chr5_4:12092583-12092602 None:intergenic 5.0%
!! AATGAATAATAATAATAATA+TGG - chr5_4:12092584-12092603 None:intergenic 5.0%
!!! ATAGTTTTTTTTTAAAATAA+CGG - chr5_4:12094818-12094837 None:intergenic 5.0%
!! ATATTATTTCATTTATTTAA+AGG + chr5_4:12095438-12095457 Msa0837970:intron 5.0%
TACCTCCTCTACAGAAGGAG+CGG - chr5_4:12092156-12092175 None:intergenic 50.0%
! AGGTGGACAAGCTTTGTGAC+AGG + chr5_4:12092544-12092563 Msa0837970:five_prime_UTR 50.0%
! GGTGGACAAGCTTTGTGACA+GGG + chr5_4:12092545-12092564 Msa0837970:five_prime_UTR 50.0%
TCCATTGACAGCCACATCCA+AGG - chr5_4:12092672-12092691 None:intergenic 50.0%
TTGGATGTGGCTGTCAATGG+AGG + chr5_4:12092671-12092690 Msa0837970:five_prime_UTR 50.0%
TGGATGTGGCTGTCAATGGA+GGG + chr5_4:12092672-12092691 Msa0837970:five_prime_UTR 50.0%
AGGAAATTGCTGGAGCTGGA+TGG + chr5_4:12092741-12092760 Msa0837970:five_prime_UTR 50.0%
GCTGGAGCTGGATGGTATTA+AGG + chr5_4:12092749-12092768 Msa0837970:five_prime_UTR 50.0%
! AGCGATTCTGGTGAAGGTGT+CGG + chr5_4:12093279-12093298 Msa0837970:five_prime_UTR 50.0%
CATGCAGAAAAGAGGGACGA+TGG - chr5_4:12093339-12093358 None:intergenic 50.0%
! GGGTTGGCAGCTAATGTCAT+TGG + chr5_4:12093800-12093819 Msa0837970:intron 50.0%
GAAAATACGACGGCTCATGG+CGG + chr5_4:12093927-12093946 Msa0837970:five_prime_UTR 50.0%
GAAAATGTGTCTCACGGCCA+AGG + chr5_4:12093949-12093968 Msa0837970:five_prime_UTR 50.0%
AGCATATGCAGGTTGCCATC+AGG - chr5_4:12095325-12095344 None:intergenic 50.0%
CCATTCAGGAATAGCAGCAG+AGG - chr5_4:12095484-12095503 None:intergenic 50.0%
CCTCTGCTGCTATTCCTGAA+TGG + chr5_4:12095481-12095500 Msa0837970:five_prime_UTR 50.0%
!!! GCCAGTTTTCTGGTTATGCG+TGG + chr5_4:12095536-12095555 Msa0837970:five_prime_UTR 50.0%
CCCACGCATAACCAGAAAAC+TGG - chr5_4:12095540-12095559 None:intergenic 50.0%
! GCATGGCTGATGGGAGTTTT+TGG + chr5_4:12096169-12096188 Msa0837970:CDS 50.0%
GAGGCTCAACTGCATAGCAT+AGG - chr5_4:12096447-12096466 None:intergenic 50.0%
AGCCCGGATATTACCACCTT+CGG - chr5_4:12096509-12096528 None:intergenic 50.0%
!! TTTTGGTCTTTCACGGTCCG+TGG + chr5_4:12096785-12096804 Msa0837970:three_prime_UTR 50.0%
ACCTCCTCTACAGAAGGAGC+GGG - chr5_4:12092155-12092174 None:intergenic 55.0%
GCCTTGGATGTGGCTGTCAA+TGG + chr5_4:12092668-12092687 Msa0837970:five_prime_UTR 55.0%
!! GATTCTGGTGAAGGTGTCGG+CGG + chr5_4:12093282-12093301 Msa0837970:five_prime_UTR 55.0%
! GGCGGAGAGGAGTTTTACAG+TGG + chr5_4:12093300-12093319 Msa0837970:five_prime_UTR 55.0%
CGGCCAAGGTTGCGATTTGA+CGG + chr5_4:12093963-12093982 Msa0837970:five_prime_UTR 55.0%
!!! ACTATGGTTTTGGCTGGCGG+TGG + chr5_4:12094833-12094852 Msa0837970:intron 55.0%
!!! CTATGGTTTTGGCTGGCGGT+GGG + chr5_4:12094834-12094853 Msa0837970:intron 55.0%
!! GCTGACTTCCATTTCTGGCC+AGG + chr5_4:12095404-12095423 Msa0837970:intron 55.0%
!! GAGCAAGTTGGTACTGAGCC+CGG - chr5_4:12096525-12096544 None:intergenic 55.0%
GCTCTCTGTCTTCATCGAGC+TGG + chr5_4:12096541-12096560 Msa0837970:three_prime_UTR 55.0%
!! GCAGGTGTTGGCCTTGGATG+TGG + chr5_4:12092658-12092677 Msa0837970:intron 60.0%
GGCTGTCAATGGAGGGACCA+CGG + chr5_4:12092679-12092698 Msa0837970:five_prime_UTR 60.0%
GGCGGTCATGCTTGAAGGGT+TGG + chr5_4:12093784-12093803 Msa0837970:intron 60.0%
CTGGCCCGCTCCTTCTGTAG+AGG + chr5_4:12092148-12092167 Msa0837970:five_prime_UTR 65.0%
GCCCGCTCCTTCTGTAGAGG+AGG + chr5_4:12092151-12092170 Msa0837970:five_prime_UTR 65.0%
!! TGGTGAAGGTGTCGGCGGAG+AGG + chr5_4:12093287-12093306 Msa0837970:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 12092088 12097008 12092088 ID=Msa0837970;Name=Msa0837970
chr5_4 mRNA 12092088 12097008 12092088 ID=Msa0837970-mRNA-1;Parent=Msa0837970;Name=Msa0837970-mRNA-1;_AED=0.16;_eAED=0.16;_QI=1670|1|1|1|0.33|0.23|13|792|68
chr5_4 exon 12092088 12092172 12092088 ID=Msa0837970-mRNA-1:exon:5363;Parent=Msa0837970-mRNA-1
chr5_4 exon 12092490 12092566 12092490 ID=Msa0837970-mRNA-1:exon:5364;Parent=Msa0837970-mRNA-1
chr5_4 exon 12092662 12092806 12092662 ID=Msa0837970-mRNA-1:exon:5365;Parent=Msa0837970-mRNA-1
chr5_4 exon 12093059 12093579 12093059 ID=Msa0837970-mRNA-1:exon:5366;Parent=Msa0837970-mRNA-1
chr5_4 exon 12093810 12093984 12093810 ID=Msa0837970-mRNA-1:exon:5367;Parent=Msa0837970-mRNA-1
chr5_4 exon 12094120 12094208 12094120 ID=Msa0837970-mRNA-1:exon:5368;Parent=Msa0837970-mRNA-1
chr5_4 exon 12094303 12094372 12094303 ID=Msa0837970-mRNA-1:exon:5369;Parent=Msa0837970-mRNA-1
chr5_4 exon 12094479 12094594 12094479 ID=Msa0837970-mRNA-1:exon:5370;Parent=Msa0837970-mRNA-1
chr5_4 exon 12095221 12095256 12095221 ID=Msa0837970-mRNA-1:exon:5371;Parent=Msa0837970-mRNA-1
chr5_4 exon 12095296 12095374 12095296 ID=Msa0837970-mRNA-1:exon:5372;Parent=Msa0837970-mRNA-1
chr5_4 exon 12095460 12095570 12095460 ID=Msa0837970-mRNA-1:exon:5373;Parent=Msa0837970-mRNA-1
chr5_4 exon 12095730 12096042 12095730 ID=Msa0837970-mRNA-1:exon:5374;Parent=Msa0837970-mRNA-1
chr5_4 exon 12096157 12097008 12096157 ID=Msa0837970-mRNA-1:exon:5375;Parent=Msa0837970-mRNA-1
chr5_4 five_prime_UTR 12092088 12092172 12092088 ID=Msa0837970-mRNA-1:five_prime_utr;Parent=Msa0837970-mRNA-1
chr5_4 five_prime_UTR 12092490 12092566 12092490 ID=Msa0837970-mRNA-1:five_prime_utr;Parent=Msa0837970-mRNA-1
chr5_4 five_prime_UTR 12092662 12092806 12092662 ID=Msa0837970-mRNA-1:five_prime_utr;Parent=Msa0837970-mRNA-1
chr5_4 five_prime_UTR 12093059 12093579 12093059 ID=Msa0837970-mRNA-1:five_prime_utr;Parent=Msa0837970-mRNA-1
chr5_4 five_prime_UTR 12093810 12093984 12093810 ID=Msa0837970-mRNA-1:five_prime_utr;Parent=Msa0837970-mRNA-1
chr5_4 five_prime_UTR 12094120 12094208 12094120 ID=Msa0837970-mRNA-1:five_prime_utr;Parent=Msa0837970-mRNA-1
chr5_4 five_prime_UTR 12094303 12094372 12094303 ID=Msa0837970-mRNA-1:five_prime_utr;Parent=Msa0837970-mRNA-1
chr5_4 five_prime_UTR 12094479 12094594 12094479 ID=Msa0837970-mRNA-1:five_prime_utr;Parent=Msa0837970-mRNA-1
chr5_4 five_prime_UTR 12095221 12095256 12095221 ID=Msa0837970-mRNA-1:five_prime_utr;Parent=Msa0837970-mRNA-1
chr5_4 five_prime_UTR 12095296 12095374 12095296 ID=Msa0837970-mRNA-1:five_prime_utr;Parent=Msa0837970-mRNA-1
chr5_4 five_prime_UTR 12095460 12095570 12095460 ID=Msa0837970-mRNA-1:five_prime_utr;Parent=Msa0837970-mRNA-1
chr5_4 five_prime_UTR 12095730 12095895 12095730 ID=Msa0837970-mRNA-1:five_prime_utr;Parent=Msa0837970-mRNA-1
chr5_4 CDS 12095896 12096042 12095896 ID=Msa0837970-mRNA-1:cds;Parent=Msa0837970-mRNA-1
chr5_4 CDS 12096157 12096216 12096157 ID=Msa0837970-mRNA-1:cds;Parent=Msa0837970-mRNA-1
chr5_4 three_prime_UTR 12096217 12097008 12096217 ID=Msa0837970-mRNA-1:three_prime_utr;Parent=Msa0837970-mRNA-1
Gene Sequence

>Msa0837970

ATGGTAAATAAATTTTCTAACAAAACATGTTTTCAAGAGGAACTGTCTTCAAAGCTGTTGGTGGTGTTGGTCATGCTTCTCAACAAAGCAAGAAGTCATACAAGAAAGTTTACAAAAATAGGTGATGATTATAATAGCTTGGAACAGGTGAAAATGATTGCATGGCTGATGGGAGTTTTTGGCATATTTGCAATTATTGATTGGTAG
Protein sequence

>Msa0837970

MVNKFSNKTCFQEELSSKLLVVLVMLLNKARSHTRKFTKIGDDYNSLEQVKMIAWLMGVFGIFAIIDW*