AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0922450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0922450 MtrunA17_Chr7g0243051 84.211 38 6 0 3 40 132 169 1.84e-15 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 108 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACACTACTCTTGTTTAT+TGG 0.122133 6_2:+61033914 None:intergenic
CTGGTGGACACAATGTTATT+TGG 0.218175 6_2:-61035217 Msa0922450:three_prime_UTR
GATCTCAAAATAAGAAAATA+TGG 0.234683 6_2:-61037410 Msa0922450:five_prime_UTR
TGGTGGACACAATGTTATTT+GGG 0.250228 6_2:-61035216 Msa0922450:three_prime_UTR
CTACTGTTATATTGAAGTTC+TGG 0.267449 6_2:+61032662 None:intergenic
ACATTGAGCAAGCTTTAAAA+TGG 0.306011 6_2:-61033257 Msa0922450:three_prime_UTR
TAACAGTAGATCAAATTAAA+AGG 0.312955 6_2:-61032648 Msa0922450:three_prime_UTR
TTTAAAGCTTGCTCAATGTT+TGG 0.324866 6_2:+61033261 None:intergenic
TCAATGTCACTATCAGATTC+TGG 0.325954 6_2:+61032698 None:intergenic
TAACTGAACTCCCTCCTATT+AGG 0.329209 6_2:-61035377 Msa0922450:intron
AATAGATAAACTAACCTAAT+AGG 0.330539 6_2:+61035363 None:intergenic
AATCCAAGCAAAAGACTCTT+AGG 0.331299 6_2:+61035164 None:intergenic
GCTGGAGCTGGATGGTATTA+AGG 0.331947 6_2:-61036745 Msa0922450:exon
TGGTTACACAATCTCTGTTT+TGG 0.346633 6_2:-61036404 Msa0922450:intron
TGGGCTATGTATATTGATTC+TGG 0.348095 6_2:+61032737 None:intergenic
AAATGGGATAGGAACCCTTT+TGG 0.349341 6_2:-61033111 Msa0922450:three_prime_UTR
CAAAGAAAGTTGTCTGATAT+TGG 0.350852 6_2:-61032915 Msa0922450:three_prime_UTR
TTGAAGCAAATCAATGTATC+AGG 0.351192 6_2:+61035580 None:intergenic
TGACACTATCAGCGGTTCTT+AGG 0.355127 6_2:+61033031 None:intergenic
GGTGATTCATGTTTGTTGTT+TGG 0.360298 6_2:-61035415 Msa0922450:three_prime_UTR
CAATCCTTATGTCGATCTTA+AGG 0.363766 6_2:-61035560 Msa0922450:three_prime_UTR
AATAGAAGTATAATATCAAC+TGG 0.365951 6_2:+61033081 None:intergenic
TAAAACTATAGGGTTTGTTT+TGG 0.367070 6_2:-61035436 Msa0922450:intron
CATAGCCCAACATGAATGAT+AGG 0.373709 6_2:-61032723 Msa0922450:three_prime_UTR
TGTTGCTCAATGTAAGAGAT+AGG 0.373738 6_2:-61032887 Msa0922450:three_prime_UTR
GGTTAAACCTAAAATGATAA+TGG 0.379506 6_2:-61035609 Msa0922450:three_prime_UTR
TTTGATGGTGTTGAAATTCA+TGG 0.380570 6_2:-61036433 Msa0922450:three_prime_UTR
ATTAAAGAAGGAAATCAATA+TGG 0.387663 6_2:+61032542 None:intergenic
ATGCAAATGATGCTAGAGTT+AGG 0.399528 6_2:-61032762 Msa0922450:three_prime_UTR
TTCAAAGCTGTTGGTGGTGT+TGG 0.407418 6_2:-61033785 Msa0922450:three_prime_UTR
GCCTTGGATGTGGCTGTCAA+TGG 0.409273 6_2:-61036826 Msa0922450:CDS
GTTGCTTATGAGGAAATTGC+TGG 0.415619 6_2:-61036763 Msa0922450:CDS
AACAATCTAAAGAGGAATAT+AGG 0.417865 6_2:-61034214 Msa0922450:three_prime_UTR
AGGTGGACAAGCTTTGTGAT+AGG 0.419195 6_2:-61036944 Msa0922450:CDS
AAAAGGGTTCCTATCCCATT+TGG 0.423193 6_2:+61033113 None:intergenic
CTCCAGAGAGCTTCATCAAA+AGG 0.423241 6_2:+61035851 None:intergenic
AAGGACATGATGATATCTAT+TGG 0.424202 6_2:-61035541 Msa0922450:intron
CCCACGCATAACCAGAAAAC+TGG 0.424594 6_2:+61034191 None:intergenic
CTGGTCCCTATCATTCATGT+TGG 0.434311 6_2:+61032717 None:intergenic
TGGTCCCTATCATTCATGTT+GGG 0.435425 6_2:+61032718 None:intergenic
TGCTCCATAGCATACTGTTT+CGG 0.436756 6_2:-61034388 Msa0922450:three_prime_UTR
ATTGTTGTATTTCTATATAG+TGG 0.437984 6_2:-61034519 Msa0922450:intron
TGACTACAGAGTTGCTTATG+AGG 0.441095 6_2:-61036773 Msa0922450:CDS
GCAGGTGTTGGCCTTGGATG+TGG 0.469671 6_2:-61036836 Msa0922450:intron
AAATAAACAAAAGCCAAAAC+AGG 0.472049 6_2:+61032580 None:intergenic
CGGCCAAGGTTGCGATTTGA+CGG 0.472968 6_2:-61035765 Msa0922450:intron
AGCATATGCAGGTTGCCATC+AGG 0.476906 6_2:+61034407 None:intergenic
AATGAAAATACGACGGCTCA+TGG 0.476933 6_2:-61035804 Msa0922450:three_prime_UTR
AAAGCTTGCTCAATGTTTGG+AGG 0.482572 6_2:+61033264 None:intergenic
TCAACTGGGTCATTCCCAAA+AGG 0.485241 6_2:+61033096 None:intergenic
TGCAAATGATGCTAGAGTTA+GGG 0.491594 6_2:-61032761 Msa0922450:three_prime_UTR
TATGAGGAAATTGCTGGAGC+TGG 0.493825 6_2:-61036757 Msa0922450:CDS
TTGGATGTGGCTGTCAATGG+AGG 0.496098 6_2:-61036823 Msa0922450:CDS
TCTTCCGAAACAGTATGCTA+TGG 0.499687 6_2:+61034384 None:intergenic
TTGTAGGTGCCAAATGGGAT+AGG 0.506945 6_2:-61033122 Msa0922450:intron
AAATTTGAAGAGATTAAAGA+AGG 0.510288 6_2:+61032530 None:intergenic
GGTGGACAAGCTTTGTGATA+GGG 0.512097 6_2:-61036943 Msa0922450:intron
TTTCAAGCTGTTGCTGCAGT+AGG 0.524179 6_2:-61036972 Msa0922450:CDS
CAACTGGGTCATTCCCAAAA+GGG 0.525279 6_2:+61033097 None:intergenic
ATAAGTCTAATTTCTGACTA+CGG 0.526831 6_2:-61035876 Msa0922450:three_prime_UTR
ACCTCTTCTACAGAAGGAGC+AGG 0.526881 6_2:+61037340 None:intergenic
AAACAAGAGTAGTGTGAAGA+AGG 0.535530 6_2:-61033909 Msa0922450:intron
CACTTCTGCTGAAAAGATGA+AGG 0.537639 6_2:-61032998 Msa0922450:three_prime_UTR
GTATGCTATGGAGCATATGC+AGG 0.538309 6_2:+61034396 None:intergenic
GGAACTGTCTTCAAAGCTGT+TGG 0.544546 6_2:-61033794 Msa0922450:three_prime_UTR
AGATAAACTAACCTAATAGG+AGG 0.545332 6_2:+61035366 None:intergenic
AAAACAGTGAACAAGGGTAA+AGG 0.549500 6_2:-61033996 Msa0922450:three_prime_UTR
GATATTACCTCTTCTACAGA+AGG 0.550038 6_2:+61037334 None:intergenic
GCCTGCTCCTTCTGTAGAAG+AGG 0.553891 6_2:-61037341 Msa0922450:intron
AGGTGATGATTATAATAGCT+TGG 0.556853 6_2:-61033713 Msa0922450:three_prime_UTR
ACAACTTTCTTTGCGCGCCA+CGG 0.557862 6_2:+61032925 None:intergenic
GAAAATGTGTCTCACGGCCA+AGG 0.559670 6_2:-61035779 Msa0922450:three_prime_UTR
AACAGCTAATGAAAAGACTC+TGG 0.561222 6_2:-61037363 Msa0922450:five_prime_UTR
GTCAGGTTAACAATCTAAAG+AGG 0.562124 6_2:-61034222 Msa0922450:intron
ATGTCCTTAAGATCGACATA+AGG 0.562412 6_2:+61035556 None:intergenic
TTTGATGAAGCTCTCTGGAG+CGG 0.571621 6_2:-61035848 Msa0922450:three_prime_UTR
ACTGTCTTCAAAGCTGTTGG+TGG 0.576536 6_2:-61033791 Msa0922450:three_prime_UTR
CAAATAACATTGTGTCCACC+AGG 0.577263 6_2:+61035218 None:intergenic
TTGTGAATCTTGTGAGCAGA+GGG 0.580456 6_2:+61035188 None:intergenic
GTTGAAATTCATGGAGCTCA+TGG 0.586021 6_2:-61036424 Msa0922450:three_prime_UTR
AACCTAAAATGATAATGGCA+AGG 0.590419 6_2:-61035604 Msa0922450:three_prime_UTR
GGTGGACACAATGTTATTTG+GGG 0.591154 6_2:-61035215 Msa0922450:three_prime_UTR
TTACCGTCAAATCGCAACCT+TGG 0.595041 6_2:+61035762 None:intergenic
TTAAGGCTGAAGGTGAAGCT+AGG 0.598267 6_2:-61036728 Msa0922450:exon
CAATATGTAACACTTGCAAG+TGG 0.598595 6_2:-61032501 Msa0922450:three_prime_UTR
TGGATGTGGCTGTCAATGGA+GGG 0.601202 6_2:-61036822 Msa0922450:CDS
CTGGATGGTATTAAGGCTGA+AGG 0.605506 6_2:-61036738 Msa0922450:exon
GATAAACTAACCTAATAGGA+GGG 0.607158 6_2:+61035367 None:intergenic
ATAGCCCAACATGAATGATA+GGG 0.607684 6_2:-61032722 Msa0922450:three_prime_UTR
AGGAAATTGCTGGAGCTGGA+TGG 0.613422 6_2:-61036753 Msa0922450:CDS
ATGGCGGAAAATGTGTCTCA+CGG 0.626613 6_2:-61035785 Msa0922450:three_prime_UTR
GGCTGTCAATGGAGGGACCA+CGG 0.626800 6_2:-61036815 Msa0922450:CDS
TCCATTGACAGCCACATCCA+AGG 0.628433 6_2:+61036825 None:intergenic
TGCTGCAGTAGGATCAGAGG+TGG 0.634455 6_2:-61036961 Msa0922450:CDS
TTATGCGTGGGCTGAAAATG+AGG 0.637872 6_2:-61034179 Msa0922450:intron
TGTTGCTGCAGTAGGATCAG+AGG 0.643755 6_2:-61036964 Msa0922450:CDS
ATAAATTCTGTCAGAAACCG+TGG 0.644982 6_2:+61036798 None:intergenic
TAGGTTGCAGAGAAAAGCTG+AGG 0.646000 6_2:-61036709 Msa0922450:intron
ATTGTGAATCTTGTGAGCAG+AGG 0.647355 6_2:+61035187 None:intergenic
AGTGAACAAGGGTAAAGGAG+AGG 0.648455 6_2:-61033991 Msa0922450:three_prime_UTR
AATTAAAAGGAAGATGACAA+TGG 0.667253 6_2:-61032635 Msa0922450:three_prime_UTR
TGGTTGTATAAAGCTTCCGA+AGG 0.667521 6_2:-61033237 Msa0922450:intron
TTGTCAAAGAGAAAACCTGA+TGG 0.669312 6_2:-61034422 Msa0922450:three_prime_UTR
ATACTTAAATGAAAATACGA+CGG 0.677422 6_2:-61035811 Msa0922450:three_prime_UTR
CATGCATATGACACTATCAG+CGG 0.691166 6_2:+61033023 None:intergenic
ACTGTTTCGGAAGAAAACAA+AGG 0.693597 6_2:-61034375 Msa0922450:intron
GAAAATACGACGGCTCATGG+CGG 0.694524 6_2:-61035801 Msa0922450:three_prime_UTR
ATAGAAGTATAATATCAACT+GGG 0.754814 6_2:+61033082 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATGATAATGTTTTATTTA+GGG - chr6_2:61032904-61032923 Msa0922450:three_prime_UTR 10.0%
!! TCTATAATGAATAATAATAT+GGG + chr6_2:61033018-61033037 None:intergenic 10.0%
!! TTCTATAATGAATAATAATA+TGG + chr6_2:61033019-61033038 None:intergenic 10.0%
!! ATTGTTTATAATTGTATATA+GGG - chr6_2:61036497-61036516 Msa0922450:intron 10.0%
!!! GTAATGATAATGTTTTATTT+AGG - chr6_2:61032903-61032922 Msa0922450:three_prime_UTR 15.0%
!!! AAAAAAAAAAACTATGGTTT+TGG - chr6_2:61035017-61035036 Msa0922450:intron 15.0%
!!! TAAAATATCGTTCAAATTTT+CGG + chr6_2:61035199-61035218 None:intergenic 15.0%
!!! TTTGGTTGATAAAAAATTTA+TGG - chr6_2:61035223-61035242 Msa0922450:three_prime_UTR 15.0%
!!! ATTATATGTATCATGAATTT+TGG + chr6_2:61035342-61035361 None:intergenic 15.0%
!!! AAACATTCAAATTTTTCATT+AGG - chr6_2:61036331-61036350 Msa0922450:intron 15.0%
!! CTATATACAATTATAAACAA+TGG + chr6_2:61036498-61036517 None:intergenic 15.0%
!! CATTGTTTATAATTGTATAT+AGG - chr6_2:61036496-61036515 Msa0922450:intron 15.0%
!! GATCTCAAAATAAGAAAATA+TGG - chr6_2:61032513-61032532 Msa0922450:three_prime_UTR 20.0%
!! ATATCAATAATCATCTGTTT+AGG - chr6_2:61032607-61032626 Msa0922450:three_prime_UTR 20.0%
!! TATCAATAATCATCTGTTTA+GGG - chr6_2:61032608-61032627 Msa0922450:three_prime_UTR 20.0%
!! AAAAATTAAAGATTTACTGC+AGG - chr6_2:61032777-61032796 Msa0922450:three_prime_UTR 20.0%
!!! AAAATCTTTTAACAAAACCA+TGG + chr6_2:61032934-61032953 None:intergenic 20.0%
!!! TTTAATACCATGATTTTGTT+TGG + chr6_2:61033336-61033355 None:intergenic 20.0%
!! GGGTTGTTAAAAATTAAAAA+TGG - chr6_2:61033397-61033416 Msa0922450:intron 20.0%
!! AAAAATTAAAAATGGAGTGT+TGG - chr6_2:61033405-61033424 Msa0922450:intron 20.0%
!! TAACTACTACTCAAAATATA+TGG - chr6_2:61033548-61033567 Msa0922450:intron 20.0%
!!! AACTTATTTGATAATGTCAT+TGG - chr6_2:61033995-61034014 Msa0922450:three_prime_UTR 20.0%
!! ATACTTAAATGAAAATACGA+CGG - chr6_2:61034112-61034131 Msa0922450:intron 20.0%
!! AATAGATAAACTAACCTAAT+AGG + chr6_2:61034563-61034582 None:intergenic 20.0%
!!! TACATAGTTCTTTAAAAACA+TGG + chr6_2:61034919-61034938 None:intergenic 20.0%
!!! CTCATAAATTTTATGTATCA+TGG + chr6_2:61035365-61035384 None:intergenic 20.0%
!! CATGATACATAAAATTTATG+AGG - chr6_2:61035363-61035382 Msa0922450:intron 20.0%
!!! ATTGTTGTATTTCTATATAG+TGG - chr6_2:61035404-61035423 Msa0922450:three_prime_UTR 20.0%
!!! TATATCATTTTTGAATCCAA+AGG - chr6_2:61036047-61036066 Msa0922450:intron 20.0%
!!! TTTATTTACCATTTTAGAAG+TGG + chr6_2:61036083-61036102 None:intergenic 20.0%
!! ACAAGAAAGTTTACAAAAAT+AGG - chr6_2:61036190-61036209 Msa0922450:intron 20.0%
!! CTATCTCTAATTATTCAAAA+AGG - chr6_2:61036242-61036261 Msa0922450:intron 20.0%
!!! ATAGAAGTATAATATCAACT+GGG + chr6_2:61036844-61036863 None:intergenic 20.0%
!!! AATAGAAGTATAATATCAAC+TGG + chr6_2:61036845-61036864 None:intergenic 20.0%
!!! CCTTAAAATTTCTTTTCATA+GGG + chr6_2:61037125-61037144 None:intergenic 20.0%
!!! ACCTTAAAATTTCTTTTCAT+AGG + chr6_2:61037126-61037145 None:intergenic 20.0%
!! TAACAGTAGATCAAATTAAA+AGG - chr6_2:61037275-61037294 Msa0922450:intron 20.0%
!! ATTAAAGAAGGAAATCAATA+TGG + chr6_2:61037384-61037403 None:intergenic 20.0%
!! AAATTTGAAGAGATTAAAGA+AGG + chr6_2:61037396-61037415 None:intergenic 20.0%
! TTTCTTCTCATGTGTTTATT+TGG + chr6_2:61032755-61032774 None:intergenic 25.0%
!!! GAAAATGATTTTCTGAAAGT+TGG - chr6_2:61032799-61032818 Msa0922450:three_prime_UTR 25.0%
! GAATAATAATATGGGAAACA+TGG + chr6_2:61033010-61033029 None:intergenic 25.0%
!!! ATTACTGATTGTAATTTTGC+AGG - chr6_2:61033069-61033088 Msa0922450:three_prime_UTR 25.0%
!!! TTTCGAACTTTTTGAGTTTT+TGG - chr6_2:61033369-61033388 Msa0922450:intron 25.0%
!!! TTTTTGAGTTTTTGGAATCT+GGG - chr6_2:61033377-61033396 Msa0922450:intron 25.0%
!!! GTTTTGAATTTCTTTGACTT+TGG - chr6_2:61033596-61033615 Msa0922450:intron 25.0%
! ACAAATCATTAACAACACAA+GGG + chr6_2:61033643-61033662 None:intergenic 25.0%
! AACAAATCATTAACAACACA+AGG + chr6_2:61033644-61033663 None:intergenic 25.0%
! TTGTTGTAATATGTTTCCAA+TGG - chr6_2:61033659-61033678 Msa0922450:intron 25.0%
!!! AACGAAAATATTTTGACCAT+TGG + chr6_2:61033678-61033697 None:intergenic 25.0%
! AAGTAGGAAAACACATAAAT+AGG + chr6_2:61033819-61033838 None:intergenic 25.0%
! TACACTTGAAACTTAAAAGA+AGG - chr6_2:61033922-61033941 Msa0922450:three_prime_UTR 25.0%
!!! TTATTTGATAATGTCATTGG+AGG - chr6_2:61033998-61034017 Msa0922450:three_prime_UTR 25.0%
! ATAAGTCTAATTTCTGACTA+CGG - chr6_2:61034047-61034066 Msa0922450:intron 25.0%
!! AATATGAAGAGCATGAAATA+AGG + chr6_2:61034211-61034230 None:intergenic 25.0%
!!! GTTAAGTTTTTTACTGCTAT+GGG - chr6_2:61034249-61034268 Msa0922450:intron 25.0%
! GGTTAAACCTAAAATGATAA+TGG - chr6_2:61034314-61034333 Msa0922450:intron 25.0%
!!! TAAAACTATAGGGTTTGTTT+TGG - chr6_2:61034487-61034506 Msa0922450:intron 25.0%
!!! TTTTTTTTAAGACAATCTCC+TGG - chr6_2:61034687-61034706 Msa0922450:intron 25.0%
!!! CTTTAAAAACATGGCAATTT+TGG + chr6_2:61034910-61034929 None:intergenic 25.0%
! TTTAAAGAACTATGTATGCT+TGG - chr6_2:61034923-61034942 Msa0922450:intron 25.0%
!!! AATAACGGTAATTTTAGTCT+TGG + chr6_2:61034995-61035014 None:intergenic 25.0%
!!! AATGACTTTTTTTAGTGTAC+AGG - chr6_2:61035156-61035175 Msa0922450:intron 25.0%
!! TGAACGATATTTTATGACTT+TGG - chr6_2:61035205-61035224 Msa0922450:three_prime_UTR 25.0%
!! TTTATGGCAAGAATTCTTTT+TGG - chr6_2:61035239-61035258 Msa0922450:three_prime_UTR 25.0%
!! TTATGGCAAGAATTCTTTTT+GGG - chr6_2:61035240-61035259 Msa0922450:three_prime_UTR 25.0%
!!! GTTGATAACATAAAAGTTGA+AGG - chr6_2:61035274-61035293 Msa0922450:intron 25.0%
! AACAATCTAAAGAGGAATAT+AGG - chr6_2:61035709-61035728 Msa0922450:intron 25.0%
!!! TAACAAAACATGTTTTCAAG+AGG - chr6_2:61036108-61036127 Msa0922450:intron 25.0%
! AGAGCTTAATGTCAAAAAAT+GGG + chr6_2:61036269-61036288 None:intergenic 25.0%
! AAGAGCTTAATGTCAAAAAA+TGG + chr6_2:61036270-61036289 None:intergenic 25.0%
! GCATATTTGCAATTATTGAT+TGG - chr6_2:61036387-61036406 Msa0922450:intron 25.0%
! TAAATGACATTGTAATGTGT+CGG - chr6_2:61036421-61036440 Msa0922450:three_prime_UTR 25.0%
!! GTATTAGTTTATCCTTAGAA+TGG - chr6_2:61036570-61036589 Msa0922450:intron 25.0%
! TGATAGTTTATGTCTAACAA+AGG - chr6_2:61036613-61036632 Msa0922450:intron 25.0%
!!! TTAAGATTTTTGGTCTTTCA+CGG - chr6_2:61036974-61036993 Msa0922450:CDS 25.0%
!! CCCTATGAAAAGAAATTTTA+AGG - chr6_2:61037122-61037141 Msa0922450:intron 25.0%
! AATTAAAAGGAAGATGACAA+TGG - chr6_2:61037288-61037307 Msa0922450:intron 25.0%
!! ACAGTTAATTTTACCTGTTT+TGG - chr6_2:61037330-61037349 Msa0922450:intron 25.0%
! AAATAAACAAAAGCCAAAAC+AGG + chr6_2:61037346-61037365 None:intergenic 25.0%
! AGCAAGTTATTAGCTTAAGA+AGG + chr6_2:61032836-61032855 None:intergenic 30.0%
AAAAGCTGAGGTAATGTTTA+TGG - chr6_2:61033226-61033245 Msa0922450:intron 30.0%
!! GATTTTGTTTGGCACATATA+TGG + chr6_2:61033325-61033344 None:intergenic 30.0%
ATATGTGCCAAACAAAATCA+TGG - chr6_2:61033326-61033345 Msa0922450:intron 30.0%
!!! CTTTTTGAGTTTTTGGAATC+TGG - chr6_2:61033376-61033395 Msa0922450:intron 30.0%
!! TTTGATGGTGTTGAAATTCA+TGG - chr6_2:61033490-61033509 Msa0922450:intron 30.0%
TCGCTGTAATTTATGAATTG+AGG - chr6_2:61033574-61033593 Msa0922450:intron 30.0%
TTCATGCTCTTCATATTGAT+TGG - chr6_2:61034214-61034233 Msa0922450:three_prime_UTR 30.0%
GTAAAAAACTTAACCATCAC+AGG + chr6_2:61034243-61034262 None:intergenic 30.0%
!!! GGTTAAGTTTTTTACTGCTA+TGG - chr6_2:61034248-61034267 Msa0922450:intron 30.0%
CATACTAATTTCCCTAGATT+GGG - chr6_2:61034280-61034299 Msa0922450:intron 30.0%
TTTCATAATCACCCAATCTA+GGG + chr6_2:61034294-61034313 None:intergenic 30.0%
!! AACCTAAAATGATAATGGCA+AGG - chr6_2:61034319-61034338 Msa0922450:intron 30.0%
TTGAAGCAAATCAATGTATC+AGG + chr6_2:61034346-61034365 None:intergenic 30.0%
AAGGACATGATGATATCTAT+TGG - chr6_2:61034382-61034401 Msa0922450:three_prime_UTR 30.0%
!! ACTCATGTCTCTAAAACTAT+AGG - chr6_2:61034476-61034495 Msa0922450:intron 30.0%
!! CTCATGTCTCTAAAACTATA+GGG - chr6_2:61034477-61034496 Msa0922450:intron 30.0%
GATAAACTAACCTAATAGGA+GGG + chr6_2:61034559-61034578 None:intergenic 30.0%
AGATAAACTAACCTAATAGG+AGG + chr6_2:61034560-61034579 None:intergenic 30.0%
TGGAACACGAGAAAATTAAT+TGG + chr6_2:61034975-61034994 None:intergenic 30.0%
!!! AAAAAAACTATGGTTTTGGC+TGG - chr6_2:61035021-61035040 Msa0922450:intron 30.0%
TTCAAAAGTAACTGCATGTT+AGG + chr6_2:61035137-61035156 None:intergenic 30.0%
!!! TTCTTTTTGGGTAAAGTCTT+TGG - chr6_2:61035252-61035271 Msa0922450:three_prime_UTR 30.0%
AACTATATTAGACAACACTG+AGG + chr6_2:61035448-61035467 None:intergenic 30.0%
!!! TTTTTGCTGACTTCCATTTT+TGG - chr6_2:61035594-61035613 Msa0922450:three_prime_UTR 30.0%
ATAATATGTCAGCAAAAACC+TGG + chr6_2:61035620-61035639 None:intergenic 30.0%
TAGATATGAATCTTTGTGAG+TGG - chr6_2:61035805-61035824 Msa0922450:three_prime_UTR 30.0%
GAAGATGTAGATTTAATTGC+AGG + chr6_2:61035891-61035910 None:intergenic 30.0%
! TTCACACTACTCTTGTTTAT+TGG + chr6_2:61036012-61036031 None:intergenic 30.0%
! TTCAAGTACCACTTCTAAAA+TGG - chr6_2:61036072-61036091 Msa0922450:intron 30.0%
AGGTGATGATTATAATAGCT+TGG - chr6_2:61036210-61036229 Msa0922450:intron 30.0%
TATGACAAACAACAATGTTC+AGG - chr6_2:61036293-61036312 Msa0922450:intron 30.0%
TGTTCAGGTCTTGAATAATT+TGG - chr6_2:61036308-61036327 Msa0922450:intron 30.0%
ATTAGGTGAAAATGATTGCA+TGG - chr6_2:61036348-61036367 Msa0922450:intron 30.0%
AGTTTATCCTTAGAATGGAA+TGG - chr6_2:61036575-61036594 Msa0922450:intron 30.0%
! TTCTTTTCCATTCCATTCTA+AGG + chr6_2:61036585-61036604 None:intergenic 30.0%
! TTTAAAGCTTGCTCAATGTT+TGG + chr6_2:61036665-61036684 None:intergenic 30.0%
!! ACATTGAGCAAGCTTTAAAA+TGG - chr6_2:61036666-61036685 Msa0922450:intron 30.0%
CAAAGAAAGTTGTCTGATAT+TGG - chr6_2:61037008-61037027 Msa0922450:intron 30.0%
CTACTGTTATATTGAAGTTC+TGG + chr6_2:61037264-61037283 None:intergenic 30.0%
CATTAGGACAAAAAAACTGT+GGG + chr6_2:61037461-61037480 None:intergenic 30.0%
AACAGCTAATGAAAAGACTC+TGG - chr6_2:61032560-61032579 Msa0922450:three_prime_UTR 35.0%
GATATTACCTCTTCTACAGA+AGG + chr6_2:61032592-61032611 None:intergenic 35.0%
! GATTGTAATTTTGCAGGTGT+TGG - chr6_2:61033075-61033094 Msa0922450:three_prime_UTR 35.0%
ATAAATTCTGTCAGAAACCG+TGG + chr6_2:61033128-61033147 None:intergenic 35.0%
!! ATGCAAATTGCAGGTTTTGA+TGG - chr6_2:61033475-61033494 Msa0922450:intron 35.0%
! TGGTTACACAATCTCTGTTT+TGG - chr6_2:61033519-61033538 Msa0922450:intron 35.0%
!! TTTTGAGAAGAAAGCGATTC+TGG - chr6_2:61033696-61033715 Msa0922450:intron 35.0%
CCAAAAACATGCAGAAAAGA+GGG + chr6_2:61033775-61033794 None:intergenic 35.0%
ACCAAAAACATGCAGAAAAG+AGG + chr6_2:61033776-61033795 None:intergenic 35.0%
GATAACTCATGTGCGATATT+TGG - chr6_2:61033841-61033860 Msa0922450:intron 35.0%
!!! GTCATTGGAGGTTTTGAATA+TGG - chr6_2:61034010-61034029 Msa0922450:intron 35.0%
GCATACTAATTTCCCTAGAT+TGG - chr6_2:61034279-61034298 Msa0922450:intron 35.0%
CTTTCATAATCACCCAATCT+AGG + chr6_2:61034295-61034314 None:intergenic 35.0%
CTAGATTGGGTGATTATGAA+AGG - chr6_2:61034293-61034312 Msa0922450:intron 35.0%
! GACCTTGCCATTATCATTTT+AGG + chr6_2:61034324-61034343 None:intergenic 35.0%
CAATCCTTATGTCGATCTTA+AGG - chr6_2:61034363-61034382 Msa0922450:intron 35.0%
ATGTCCTTAAGATCGACATA+AGG + chr6_2:61034370-61034389 None:intergenic 35.0%
!! GGTGATTCATGTTTGTTGTT+TGG - chr6_2:61034508-61034527 Msa0922450:three_prime_UTR 35.0%
!!! TTTTTAAGACAATCTCCTGG+TGG - chr6_2:61034690-61034709 Msa0922450:intron 35.0%
! TGGTGGACACAATGTTATTT+GGG - chr6_2:61034707-61034726 Msa0922450:intron 35.0%
! AATCCTAAGAGTCTTTTGCT+TGG - chr6_2:61034756-61034775 Msa0922450:intron 35.0%
AATCCAAGCAAAAGACTCTT+AGG + chr6_2:61034762-61034781 None:intergenic 35.0%
! AGTCTTTTGCTTGGATTTCT+TGG - chr6_2:61034765-61034784 Msa0922450:intron 35.0%
AGAACTATGTATGCTTGGAT+TGG - chr6_2:61034928-61034947 Msa0922450:intron 35.0%
TAACTGCATGTTAGGAATCA+CGG + chr6_2:61035129-61035148 None:intergenic 35.0%
!!! TTTTTTTAGTGTACAGGTGC+TGG - chr6_2:61035162-61035181 Msa0922450:three_prime_UTR 35.0%
! TTGAAGGCACAAAACTATGT+TGG - chr6_2:61035290-61035309 Msa0922450:intron 35.0%
TTGTCAAAGAGAAAACCTGA+TGG - chr6_2:61035501-61035520 Msa0922450:intron 35.0%
ACTGTTTCGGAAGAAAACAA+AGG - chr6_2:61035548-61035567 Msa0922450:three_prime_UTR 35.0%
GTCAGGTTAACAATCTAAAG+AGG - chr6_2:61035701-61035720 Msa0922450:intron 35.0%
AGCAGAAAAAACAGTGAACA+AGG - chr6_2:61035920-61035939 Msa0922450:intron 35.0%
GCAGAAAAAACAGTGAACAA+GGG - chr6_2:61035921-61035940 Msa0922450:intron 35.0%
AAAACAGTGAACAAGGGTAA+AGG - chr6_2:61035927-61035946 Msa0922450:intron 35.0%
AAACAAGAGTAGTGTGAAGA+AGG - chr6_2:61036014-61036033 Msa0922450:intron 35.0%
AAGTGGTACTTGAATTCCTT+TGG + chr6_2:61036066-61036085 None:intergenic 35.0%
AAAATGATTGCATGGCTGAT+GGG - chr6_2:61036356-61036375 Msa0922450:intron 35.0%
GATGCACAATTCAGACAAAT+GGG + chr6_2:61036770-61036789 None:intergenic 35.0%
AGATGCACAATTCAGACAAA+TGG + chr6_2:61036771-61036790 None:intergenic 35.0%
! TTGATTTTGTAGGTGCCAAA+TGG - chr6_2:61036795-61036814 Msa0922450:CDS 35.0%
! TGATTTTGTAGGTGCCAAAT+GGG - chr6_2:61036796-61036815 Msa0922450:CDS 35.0%
TGTTGCTCAATGTAAGAGAT+AGG - chr6_2:61037036-61037055 Msa0922450:intron 35.0%
ATGCAAATGATGCTAGAGTT+AGG - chr6_2:61037161-61037180 Msa0922450:intron 35.0%
TGCAAATGATGCTAGAGTTA+GGG - chr6_2:61037162-61037181 Msa0922450:intron 35.0%
!! TGGGCTATGTATATTGATTC+TGG + chr6_2:61037189-61037208 None:intergenic 35.0%
ATAGCCCAACATGAATGATA+GGG - chr6_2:61037201-61037220 Msa0922450:intron 35.0%
TCAATGTCACTATCAGATTC+TGG + chr6_2:61037228-61037247 None:intergenic 35.0%
CAATATGTAACACTTGCAAG+TGG - chr6_2:61037422-61037441 Msa0922450:five_prime_UTR 35.0%
!!! ACTTGCAAGTGGTTTTGTTT+TGG - chr6_2:61037433-61037452 Msa0922450:five_prime_UTR 35.0%
!!! GTTTTATTTAGGGTGAGCCA+TGG - chr6_2:61032914-61032933 Msa0922450:three_prime_UTR 40.0%
TGACTACAGAGTTGCTTATG+AGG - chr6_2:61033150-61033169 Msa0922450:intron 40.0%
GTTGCTTATGAGGAAATTGC+TGG - chr6_2:61033160-61033179 Msa0922450:intron 40.0%
!! ATGGAGTGTTGGAATAGTGT+TGG - chr6_2:61033416-61033435 Msa0922450:intron 40.0%
CTCAATGTGATGCAAATTGC+AGG - chr6_2:61033466-61033485 Msa0922450:intron 40.0%
GTTGAAATTCATGGAGCTCA+TGG - chr6_2:61033499-61033518 Msa0922450:intron 40.0%
AAGAAAGCGATTCTGGTGAA+GGG - chr6_2:61033703-61033722 Msa0922450:intron 40.0%
ATGCAGAAAAGAGGGATGAT+GGG + chr6_2:61033767-61033786 None:intergenic 40.0%
! CCCTCTTTTCTGCATGTTTT+TGG - chr6_2:61033772-61033791 Msa0922450:three_prime_UTR 40.0%
! GCACATGAGTTATCTGAAGT+AGG + chr6_2:61033835-61033854 None:intergenic 40.0%
!! TCATGTGCGATATTTGGTGT+GGG - chr6_2:61033847-61033866 Msa0922450:intron 40.0%
AATGAAAATACGACGGCTCA+TGG - chr6_2:61034119-61034138 Msa0922450:intron 40.0%
! TATTGATTGGTGACCTGTGA+TGG - chr6_2:61034227-61034246 Msa0922450:intron 40.0%
TAACTGAACTCCCTCCTATT+AGG - chr6_2:61034546-61034565 Msa0922450:intron 40.0%
!! TCTCACAAGTTTGTTGTCAC+AGG - chr6_2:61034650-61034669 Msa0922450:intron 40.0%
!! CTCACAAGTTTGTTGTCACA+GGG - chr6_2:61034651-61034670 Msa0922450:intron 40.0%
CAAATAACATTGTGTCCACC+AGG + chr6_2:61034708-61034727 None:intergenic 40.0%
! CTGGTGGACACAATGTTATT+TGG - chr6_2:61034706-61034725 Msa0922450:intron 40.0%
! GGTGGACACAATGTTATTTG+GGG - chr6_2:61034708-61034727 Msa0922450:intron 40.0%
TTGTGAATCTTGTGAGCAGA+GGG + chr6_2:61034738-61034757 None:intergenic 40.0%
ATTGTGAATCTTGTGAGCAG+AGG + chr6_2:61034739-61034758 None:intergenic 40.0%
!!! AAAACTATGGTTTTGGCTGG+CGG - chr6_2:61035024-61035043 Msa0922450:intron 40.0%
! GCAGTGAACCATTGTGATTT+TGG - chr6_2:61035058-61035077 Msa0922450:intron 40.0%
TTATGTGCAGACTGTTTCAG+TGG - chr6_2:61035470-61035489 Msa0922450:intron 40.0%
TGCTCCATAGCATACTGTTT+CGG - chr6_2:61035535-61035554 Msa0922450:intron 40.0%
TCTTCCGAAACAGTATGCTA+TGG + chr6_2:61035542-61035561 None:intergenic 40.0%
GAAAACAAAGGTGATGTTGC+TGG - chr6_2:61035560-61035579 Msa0922450:three_prime_UTR 40.0%
AGCAAAAACCTGGCCAAAAA+TGG + chr6_2:61035610-61035629 None:intergenic 40.0%
TGTTAACCTGACAACCATTC+AGG + chr6_2:61035693-61035712 None:intergenic 40.0%
! AGGAATATAGGCCAGTTTTC+TGG - chr6_2:61035721-61035740 Msa0922450:intron 40.0%
ACATGATGATCTGATCCGTA+TGG - chr6_2:61035855-61035874 Msa0922450:three_prime_UTR 40.0%
GCAGGTTAATATCAGCCATA+CGG + chr6_2:61035873-61035892 None:intergenic 40.0%
GAAAATGATTGCATGGCTGA+TGG - chr6_2:61036355-61036374 Msa0922450:intron 40.0%
!! TAATGTGTCGGCTCTTTGTT+GGG - chr6_2:61036433-61036452 Msa0922450:three_prime_UTR 40.0%
! AAAGCTTGCTCAATGTTTGG+AGG + chr6_2:61036662-61036681 None:intergenic 40.0%
TGGTTGTATAAAGCTTCCGA+AGG - chr6_2:61036686-61036705 Msa0922450:intron 40.0%
TTGTATAAAGCTTCCGAAGG+TGG - chr6_2:61036689-61036708 Msa0922450:intron 40.0%
! GCATCTCTGCTTGATTTTGT+AGG - chr6_2:61036785-61036804 Msa0922450:CDS 40.0%
AAAAGGGTTCCTATCCCATT+TGG + chr6_2:61036813-61036832 None:intergenic 40.0%
! AAATGGGATAGGAACCCTTT+TGG - chr6_2:61036812-61036831 Msa0922450:CDS 40.0%
! AATGGGATAGGAACCCTTTT+GGG - chr6_2:61036813-61036832 Msa0922450:CDS 40.0%
CATGCATATGACACTATCAG+CGG + chr6_2:61036903-61036922 None:intergenic 40.0%
CACTTCTGCTGAAAAGATGA+AGG - chr6_2:61036925-61036944 Msa0922450:intron 40.0%
CATAGCCCAACATGAATGAT+AGG - chr6_2:61037200-61037219 Msa0922450:intron 40.0%
TGGTCCCTATCATTCATGTT+GGG + chr6_2:61037208-61037227 None:intergenic 40.0%
TTTCAAGCTGTTGCTGCAGT+AGG - chr6_2:61032951-61032970 Msa0922450:three_prime_UTR 45.0%
! AGGTGGACAAGCTTTGTGAT+AGG - chr6_2:61032979-61032998 Msa0922450:three_prime_UTR 45.0%
! GGTGGACAAGCTTTGTGATA+GGG - chr6_2:61032980-61032999 Msa0922450:three_prime_UTR 45.0%
!!! AATTTTGCAGGTGTTGGCCT+TGG - chr6_2:61033081-61033100 Msa0922450:three_prime_UTR 45.0%
TATGAGGAAATTGCTGGAGC+TGG - chr6_2:61033166-61033185 Msa0922450:intron 45.0%
CTGGATGGTATTAAGGCTGA+AGG - chr6_2:61033185-61033204 Msa0922450:intron 45.0%
TTAAGGCTGAAGGTGAAGCT+AGG - chr6_2:61033195-61033214 Msa0922450:intron 45.0%
TAGGTTGCAGAGAAAAGCTG+AGG - chr6_2:61033214-61033233 Msa0922450:intron 45.0%
!! GAGTGTTGGAATAGTGTTGG+TGG - chr6_2:61033419-61033438 Msa0922450:intron 45.0%
GAAGAAAGCGATTCTGGTGA+AGG - chr6_2:61033702-61033721 Msa0922450:intron 45.0%
AGAAAGCGATTCTGGTGAAG+GGG - chr6_2:61033704-61033723 Msa0922450:intron 45.0%
CATGCAGAAAAGAGGGATGA+TGG + chr6_2:61033768-61033787 None:intergenic 45.0%
! CTCATGTGCGATATTTGGTG+TGG - chr6_2:61033846-61033865 Msa0922450:intron 45.0%
! AGCCTTTTGATGAAGCTCTC+TGG - chr6_2:61034070-61034089 Msa0922450:intron 45.0%
CTCCAGAGAGCTTCATCAAA+AGG + chr6_2:61034075-61034094 None:intergenic 45.0%
! TTTGATGAAGCTCTCTGGAG+CGG - chr6_2:61034075-61034094 Msa0922450:intron 45.0%
! ATGGCGGAAAATGTGTCTCA+CGG - chr6_2:61034138-61034157 Msa0922450:intron 45.0%
TTACCGTCAAATCGCAACCT+TGG + chr6_2:61034164-61034183 None:intergenic 45.0%
!! CAAGTTTGTTGTCACAGGGT+TGG - chr6_2:61034655-61034674 Msa0922450:intron 45.0%
!! AGCGTTGGCCAAAATCACAA+TGG + chr6_2:61035069-61035088 None:intergenic 45.0%
! TTTTGGCCAACGCTACACTT+TGG - chr6_2:61035075-61035094 Msa0922450:intron 45.0%
TAAGCTCCAAAGTGTAGCGT+TGG + chr6_2:61035084-61035103 None:intergenic 45.0%
AGGAATCACGGTGAGTTTCA+TGG + chr6_2:61035117-61035136 None:intergenic 45.0%
GTATGCTATGGAGCATATGC+AGG + chr6_2:61035530-61035549 None:intergenic 45.0%
!! AATAGCAGCAGAGGTGTTAG+AGG + chr6_2:61035670-61035689 None:intergenic 45.0%
GCTATTCCTGAATGGTTGTC+AGG - chr6_2:61035684-61035703 Msa0922450:intron 45.0%
!!! CCAGTTTTCTGGTTATGCGT+GGG - chr6_2:61035732-61035751 Msa0922450:intron 45.0%
! TTATGCGTGGGCTGAAAATG+AGG - chr6_2:61035744-61035763 Msa0922450:intron 45.0%
AGTGAACAAGGGTAAAGGAG+AGG - chr6_2:61035932-61035951 Msa0922450:intron 45.0%
GGAACTGTCTTCAAAGCTGT+TGG - chr6_2:61036129-61036148 Msa0922450:intron 45.0%
ACTGTCTTCAAAGCTGTTGG+TGG - chr6_2:61036132-61036151 Msa0922450:intron 45.0%
!! TTCAAAGCTGTTGGTGGTGT+TGG - chr6_2:61036138-61036157 Msa0922450:intron 45.0%
!! GTAATGTGTCGGCTCTTTGT+TGG - chr6_2:61036432-61036451 Msa0922450:three_prime_UTR 45.0%
CTTCCGAAGGTGGTAATATC+CGG - chr6_2:61036699-61036718 Msa0922450:intron 45.0%
TTCCGAAGGTGGTAATATCC+GGG - chr6_2:61036700-61036719 Msa0922450:intron 45.0%
GATGAAGACAGAGAGCAAGT+TGG + chr6_2:61036733-61036752 None:intergenic 45.0%
TTGTAGGTGCCAAATGGGAT+AGG - chr6_2:61036801-61036820 Msa0922450:CDS 45.0%
CAACTGGGTCATTCCCAAAA+GGG + chr6_2:61036829-61036848 None:intergenic 45.0%
TCAACTGGGTCATTCCCAAA+AGG + chr6_2:61036830-61036849 None:intergenic 45.0%
TGACACTATCAGCGGTTCTT+AGG + chr6_2:61036895-61036914 None:intergenic 45.0%
CTGGTCCCTATCATTCATGT+TGG + chr6_2:61037209-61037228 None:intergenic 45.0%
!!! AGTTTTTTTTTTTTAAATAA+CGG + chr6_2:61035010-61035029 None:intergenic 5.0%
!! TATTTAAAAAAAAAAAACTA+TGG - chr6_2:61035011-61035030 Msa0922450:intron 5.0%
!! ATATTATTTCATTTATTTAA+AGG - chr6_2:61035633-61035652 Msa0922450:intron 5.0%
ACCTCTTCTACAGAAGGAGC+AGG + chr6_2:61032586-61032605 None:intergenic 50.0%
TGTTGCTGCAGTAGGATCAG+AGG - chr6_2:61032959-61032978 Msa0922450:three_prime_UTR 50.0%
TCCATTGACAGCCACATCCA+AGG + chr6_2:61033101-61033120 None:intergenic 50.0%
TTGGATGTGGCTGTCAATGG+AGG - chr6_2:61033100-61033119 Msa0922450:three_prime_UTR 50.0%
TGGATGTGGCTGTCAATGGA+GGG - chr6_2:61033101-61033120 Msa0922450:three_prime_UTR 50.0%
AGGAAATTGCTGGAGCTGGA+TGG - chr6_2:61033170-61033189 Msa0922450:intron 50.0%
GCTGGAGCTGGATGGTATTA+AGG - chr6_2:61033178-61033197 Msa0922450:intron 50.0%
GAAAATACGACGGCTCATGG+CGG - chr6_2:61034122-61034141 Msa0922450:intron 50.0%
GAAAATGTGTCTCACGGCCA+AGG - chr6_2:61034144-61034163 Msa0922450:intron 50.0%
AGCATATGCAGGTTGCCATC+AGG + chr6_2:61035519-61035538 None:intergenic 50.0%
!!! GCTGACTTCCATTTTTGGCC+AGG - chr6_2:61035599-61035618 Msa0922450:three_prime_UTR 50.0%
CCATTCAGGAATAGCAGCAG+AGG + chr6_2:61035679-61035698 None:intergenic 50.0%
CCTCTGCTGCTATTCCTGAA+TGG - chr6_2:61035676-61035695 Msa0922450:intron 50.0%
!!! GCCAGTTTTCTGGTTATGCG+TGG - chr6_2:61035731-61035750 Msa0922450:intron 50.0%
CCCACGCATAACCAGAAAAC+TGG + chr6_2:61035735-61035754 None:intergenic 50.0%
GAGGCTGAACTGCATAGCAT+AGG + chr6_2:61036643-61036662 None:intergenic 50.0%
AGCCCGGATATTACCACCTT+CGG + chr6_2:61036705-61036724 None:intergenic 50.0%
!! TTTTGGTCTTTCACGGTCCG+TGG - chr6_2:61036981-61037000 Msa0922450:CDS 50.0%
ACAACTTTCTTTGCGCGCCA+CGG + chr6_2:61037001-61037020 None:intergenic 50.0%
GCCTGCTCCTTCTGTAGAAG+AGG - chr6_2:61032582-61032601 Msa0922450:three_prime_UTR 55.0%
TGCTGCAGTAGGATCAGAGG+TGG - chr6_2:61032962-61032981 Msa0922450:three_prime_UTR 55.0%
GCCTTGGATGTGGCTGTCAA+TGG - chr6_2:61033097-61033116 Msa0922450:three_prime_UTR 55.0%
AGCGATTCTGGTGAAGGGGT+CGG - chr6_2:61033708-61033727 Msa0922450:three_prime_UTR 55.0%
! GTCGGCGGAGAGGAGTTTTA+CGG - chr6_2:61033726-61033745 Msa0922450:three_prime_UTR 55.0%
CGGCCAAGGTTGCGATTTGA+CGG - chr6_2:61034158-61034177 Msa0922450:intron 55.0%
!!! ACTATGGTTTTGGCTGGCGG+TGG - chr6_2:61035027-61035046 Msa0922450:intron 55.0%
!!! CTATGGTTTTGGCTGGCGGT+GGG - chr6_2:61035028-61035047 Msa0922450:intron 55.0%
GCATGGCTGATGGGAGTTCT+TGG - chr6_2:61036365-61036384 Msa0922450:intron 55.0%
!! GAGCAAGTTGGTACTGAGCC+CGG + chr6_2:61036721-61036740 None:intergenic 55.0%
GCTCTCTGTCTTCATCGAGC+TGG - chr6_2:61036737-61036756 Msa0922450:exon 55.0%
!! GCAGGTGTTGGCCTTGGATG+TGG - chr6_2:61033087-61033106 Msa0922450:three_prime_UTR 60.0%
GGCTGTCAATGGAGGGACCA+CGG - chr6_2:61033108-61033127 Msa0922450:three_prime_UTR 60.0%
GATTCTGGTGAAGGGGTCGG+CGG - chr6_2:61033711-61033730 Msa0922450:three_prime_UTR 60.0%
! GGCGGAGAGGAGTTTTACGG+TGG - chr6_2:61033729-61033748 Msa0922450:three_prime_UTR 60.0%
TGGTGAAGGGGTCGGCGGAG+AGG - chr6_2:61033716-61033735 Msa0922450:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 61032465 61037480 61032465 ID=Msa0922450;Name=Msa0922450
chr6_2 mRNA 61032465 61037480 61032465 ID=Msa0922450-mRNA-1;Parent=Msa0922450;Name=Msa0922450-mRNA-1;_AED=0.25;_eAED=0.25;_QI=147|1|1|1|0.07|0.13|15|1649|58
chr6_2 exon 61032465 61033138 61032465 ID=Msa0922450-mRNA-1:exon:9427;Parent=Msa0922450-mRNA-1
chr6_2 exon 61033238 61033291 61033238 ID=Msa0922450-mRNA-1:exon:9426;Parent=Msa0922450-mRNA-1
chr6_2 exon 61033708 61033817 61033708 ID=Msa0922450-mRNA-1:exon:9425;Parent=Msa0922450-mRNA-1
chr6_2 exon 61033910 61034020 61033910 ID=Msa0922450-mRNA-1:exon:9424;Parent=Msa0922450-mRNA-1
chr6_2 exon 61034180 61034239 61034180 ID=Msa0922450-mRNA-1:exon:9423;Parent=Msa0922450-mRNA-1
chr6_2 exon 61034376 61034455 61034376 ID=Msa0922450-mRNA-1:exon:9422;Parent=Msa0922450-mRNA-1
chr6_2 exon 61034495 61034530 61034495 ID=Msa0922450-mRNA-1:exon:9421;Parent=Msa0922450-mRNA-1
chr6_2 exon 61035159 61035273 61035159 ID=Msa0922450-mRNA-1:exon:9420;Parent=Msa0922450-mRNA-1
chr6_2 exon 61035378 61035447 61035378 ID=Msa0922450-mRNA-1:exon:9419;Parent=Msa0922450-mRNA-1
chr6_2 exon 61035542 61035630 61035542 ID=Msa0922450-mRNA-1:exon:9418;Parent=Msa0922450-mRNA-1
chr6_2 exon 61035766 61035925 61035766 ID=Msa0922450-mRNA-1:exon:9417;Parent=Msa0922450-mRNA-1
chr6_2 exon 61036405 61036457 61036405 ID=Msa0922450-mRNA-1:exon:9416;Parent=Msa0922450-mRNA-1
chr6_2 exon 61036710 61036854 61036710 ID=Msa0922450-mRNA-1:exon:9415;Parent=Msa0922450-mRNA-1
chr6_2 exon 61036944 61037020 61036944 ID=Msa0922450-mRNA-1:exon:9414;Parent=Msa0922450-mRNA-1
chr6_2 exon 61037342 61037480 61037342 ID=Msa0922450-mRNA-1:exon:9413;Parent=Msa0922450-mRNA-1
chr6_2 five_prime_UTR 61037342 61037480 61037342 ID=Msa0922450-mRNA-1:five_prime_utr;Parent=Msa0922450-mRNA-1
chr6_2 five_prime_UTR 61037013 61037020 61037013 ID=Msa0922450-mRNA-1:five_prime_utr;Parent=Msa0922450-mRNA-1
chr6_2 CDS 61036944 61037012 61036944 ID=Msa0922450-mRNA-1:cds;Parent=Msa0922450-mRNA-1
chr6_2 CDS 61036747 61036854 61036747 ID=Msa0922450-mRNA-1:cds;Parent=Msa0922450-mRNA-1
chr6_2 three_prime_UTR 61036710 61036746 61036710 ID=Msa0922450-mRNA-1:three_prime_utr;Parent=Msa0922450-mRNA-1
chr6_2 three_prime_UTR 61036405 61036457 61036405 ID=Msa0922450-mRNA-1:three_prime_utr;Parent=Msa0922450-mRNA-1
chr6_2 three_prime_UTR 61035766 61035925 61035766 ID=Msa0922450-mRNA-1:three_prime_utr;Parent=Msa0922450-mRNA-1
chr6_2 three_prime_UTR 61035542 61035630 61035542 ID=Msa0922450-mRNA-1:three_prime_utr;Parent=Msa0922450-mRNA-1
chr6_2 three_prime_UTR 61035378 61035447 61035378 ID=Msa0922450-mRNA-1:three_prime_utr;Parent=Msa0922450-mRNA-1
chr6_2 three_prime_UTR 61035159 61035273 61035159 ID=Msa0922450-mRNA-1:three_prime_utr;Parent=Msa0922450-mRNA-1
chr6_2 three_prime_UTR 61034495 61034530 61034495 ID=Msa0922450-mRNA-1:three_prime_utr;Parent=Msa0922450-mRNA-1
chr6_2 three_prime_UTR 61034376 61034455 61034376 ID=Msa0922450-mRNA-1:three_prime_utr;Parent=Msa0922450-mRNA-1
chr6_2 three_prime_UTR 61034180 61034239 61034180 ID=Msa0922450-mRNA-1:three_prime_utr;Parent=Msa0922450-mRNA-1
chr6_2 three_prime_UTR 61033910 61034020 61033910 ID=Msa0922450-mRNA-1:three_prime_utr;Parent=Msa0922450-mRNA-1
chr6_2 three_prime_UTR 61033708 61033817 61033708 ID=Msa0922450-mRNA-1:three_prime_utr;Parent=Msa0922450-mRNA-1
chr6_2 three_prime_UTR 61033238 61033291 61033238 ID=Msa0922450-mRNA-1:three_prime_utr;Parent=Msa0922450-mRNA-1
chr6_2 three_prime_UTR 61032465 61033138 61032465 ID=Msa0922450-mRNA-1:three_prime_utr;Parent=Msa0922450-mRNA-1
Gene Sequence

>Msa0922450

ATGGTTTTGTTAAAAGATTTTCAAGCTGTTGCTGCAGTAGGATCAGAGGTGGACAAGCTTTGTGATAGGGTGTTGGCCTTGGATGTGGCTGTCAATGGAGGGACCACGGTTTCTGACAGAATTTATTGTGACTACAGAGTTGCTTATGAGGAAATTGCTGGAGCTGGATGGTATTAA
Protein sequence

>Msa0922450

MVLLKDFQAVAAVGSEVDKLCDRVLALDVAVNGGTTVSDRIYCDYRVAYEEIAGAGWY*