AlfalfaGEDB | Msa0473270

M. sativa cultivar zhongmu-4 / Msa0473270

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0101820	Msa0473270	-0.803327	3.675548e-49	-8.615850e-47
Msa0473270	Msa0512750	0.801093	1.059183e-48	-8.615850e-47
Msa0473270	Msa0662650	0.800919	1.149864e-48	-8.615850e-47
Msa0473270	Msa0680100	0.815163	1.064105e-51	-8.615850e-47
Msa0473270	Msa0730610	0.812310	4.521858e-51	-8.615850e-47
Msa0473270	Msa0877250	0.810268	1.254106e-50	-8.615850e-47
Msa0473270	Msa1079100	0.805755	1.145496e-49	-8.615850e-47
Msa0473270	Msa1114350	-0.812500	4.108517e-51	-8.615850e-47
Msa0473270	Msa1124010	0.806301	8.792922e-50	-8.615850e-47
Msa0473270	Msa1134450	0.806262	8.957798e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 43 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGATAAATGGAAACCGAA+TGG	0.612701	3_3:-75842578	None:intergenic
AAGAGGAAGCTGACTATGTG+GGG	0.591978	3_3:-75841898	Msa0473270:CDS
AAGCATCACAATATTGAATT+TGG	0.165572	3_3:+75839634	Msa0473260:intron
AATAGGAACACCATCATCGA+CGG	0.635123	3_3:+75841363	Msa0473260:intron
AATATTGTATATTTCCAAAA+TGG	0.253982	3_3:+75839336	Msa0473260:intron
AATATTTGAATGGGGTGCAA+AGG	0.551607	3_3:+75841268	Msa0473260:intron
ACATGTCAAATATTTGAATG+GGG	0.675084	3_3:+75841260	Msa0473260:intron
AGAAGAAGGAGGGACTGAAG+CGG	0.644736	3_3:-75842464	Msa0473270:CDS
AGAAGCCGATGTGAAGAAGA+AGG	0.532467	3_3:-75842478	Msa0473270:CDS
AGAGGAAGCTGACTATGTGG+GGG	0.774034	3_3:-75841897	Msa0473270:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGCAATTCAATTCATAGAAA+GGG	+	chr3_3:75839530-75839549	Msa0473260:intron	30.0%
ACGCAATTCAATTCATAGAA+AGG	+	chr3_3:75839531-75839550	Msa0473260:intron	30.0%
TTCCATGTTGATATATGAAG+CGG	+	chr3_3:75839883-75839902	Msa0473260:intron	30.0%
TGTTGAATCTGTGTTAGTAA+TGG	-	chr3_3:75840098-75840117	Msa0473270:intron	30.0%
CTTGAATCAATTATTGATGC+AGG	-	chr3_3:75840125-75840144	Msa0473270:intron	30.0%
TTCTTTATTGCCTTGCTTTA+TGG	+	chr3_3:75840251-75840270	Msa0473260:intron	30.0%
GCTTGCAATGTTTATTATGA+TGG	+	chr3_3:75840299-75840318	Msa0473260:intron	30.0%
AAAATAAAAAAAGGAGCAGC+AGG	+	chr3_3:75840380-75840399	Msa0473260:intron	30.0%
TACTACTAACAGAGAATTGA+AGG	+	chr3_3:75840503-75840522	Msa0473260:intron	30.0%
GAATTGCAGATAAATGTGAA+CGG	+	chr3_3:75840632-75840651	Msa0473260:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	75839349	75842592	75839349	ID=Msa0473270;Name=Msa0473270
chr3_3	mRNA	75839349	75842592	75839349	ID=Msa0473270-mRNA-1;Parent=Msa0473270;Name=Msa0473270-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0\|0\|0.5\|1\|1\|1\|4\|180\|159
chr3_3	exon	75839349	75839676	75839349	ID=Msa0473270-mRNA-1:exon:19768;Parent=Msa0473270-mRNA-1
chr3_3	exon	75841262	75841386	75841262	ID=Msa0473270-mRNA-1:exon:19767;Parent=Msa0473270-mRNA-1
chr3_3	exon	75841865	75841933	75841865	ID=Msa0473270-mRNA-1:exon:19766;Parent=Msa0473270-mRNA-1
chr3_3	exon	75842455	75842592	75842455	ID=Msa0473270-mRNA-1:exon:19765;Parent=Msa0473270-mRNA-1
chr3_3	CDS	75842455	75842592	75842455	ID=Msa0473270-mRNA-1:cds;Parent=Msa0473270-mRNA-1
chr3_3	CDS	75841865	75841933	75841865	ID=Msa0473270-mRNA-1:cds;Parent=Msa0473270-mRNA-1
chr3_3	CDS	75841262	75841386	75841262	ID=Msa0473270-mRNA-1:cds;Parent=Msa0473270-mRNA-1
chr3_3	CDS	75839529	75839676	75839529	ID=Msa0473270-mRNA-1:cds;Parent=Msa0473270-mRNA-1
chr3_3	three_prime_UTR	75839349	75839528	75839349	ID=Msa0473270-mRNA-1:three_prime_utr;Parent=Msa0473270-mRNA-1

Gene Sequence

>Msa0473270

ATGGAAACCGAATGGCATGCGAATCAAACCTCAAAATTGAATGTGACGTCGGAGAAGCTTTCCGATCTTCTGAACAAGGCGGAGGTGGAGATAGAAGCCGATGTGAAGAAGAAGGAGGGACTGAAGCGGCATGTGAAGCTCGGATATGATGAAGAGGAAGCTGACTATGTGGGGGATGTTTCTAAGTTGACTGATAACAATCCATTGGCCGTCGATGATGGTGTTCCTATTTGCCTATCAATCGTCCTTAAGTGTCTTGCAGCTAAGATAACCGTCGGTCTCCGTTCACATTTATCTGCAATTCCTTTGCACCCCATTCAAATATTTGACATGTTATGTGGTTATGCAGTAGCCAAATTCAATATTGTGATGCTTGAAAGAAGAATGATTATGCAGCTTGAAAAAGATGTTCACAAAAAAAGGAGAACTCACATGCTGTCGTGCTGCCACTTTCTTTTAGATCTAGAATATAACCAGTAA

Protein sequence

>Msa0473270

METEWHANQTSKLNVTSEKLSDLLNKAEVEIEADVKKKEGLKRHVKLGYDEEEADYVGDVSKLTDNNPLAVDDGVPICLSIVLKCLAAKITVGLRSHLSAIPLHPIQIFDMLCGYAVAKFNIVMLERRMIMQLEKDVHKKRRTHMLSCCHFLLDLEYNQ*