Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101820 | Msa0473270 | -0.803327 | 3.675548e-49 | -8.615850e-47 |
| Msa0473270 | Msa0512750 | 0.801093 | 1.059183e-48 | -8.615850e-47 |
| Msa0473270 | Msa0662650 | 0.800919 | 1.149864e-48 | -8.615850e-47 |
| Msa0473270 | Msa0680100 | 0.815163 | 1.064105e-51 | -8.615850e-47 |
| Msa0473270 | Msa0730610 | 0.812310 | 4.521858e-51 | -8.615850e-47 |
| Msa0473270 | Msa0877250 | 0.810268 | 1.254106e-50 | -8.615850e-47 |
| Msa0473270 | Msa1079100 | 0.805755 | 1.145496e-49 | -8.615850e-47 |
| Msa0473270 | Msa1114350 | -0.812500 | 4.108517e-51 | -8.615850e-47 |
| Msa0473270 | Msa1124010 | 0.806301 | 8.792922e-50 | -8.615850e-47 |
| Msa0473270 | Msa1134450 | 0.806262 | 8.957798e-50 | -8.615850e-47 |
| Msa0473270 | Msa1173470 | 0.965008 | 4.741687e-124 | -8.615850e-47 |
| Msa0473270 | Msa1276890 | 0.815370 | 9.570809e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCATCACAATATTGAATT+TGG | 0.165572 | 3_3:+75839634 | Msa0473260:intron |
| CGATTATATATTCTAGAAAT+AGG | 0.252654 | 3_3:+75839477 | Msa0473260:intron |
| AATATTGTATATTTCCAAAA+TGG | 0.253982 | 3_3:+75839336 | Msa0473260:intron |
| ATAAAATGTTGATGTTCATT+AGG | 0.330627 | 3_3:+75839395 | Msa0473260:intron |
| TAGATCTAGAAATAGGTTAC+TGG | 0.381185 | 3_3:+75839513 | Msa0473260:intron |
| TGAAATCAAGAATGGGAGTT+TGG | 0.382622 | 3_3:+75839432 | Msa0473260:intron |
| GGTTATGTAGATCTAGAAAT+AGG | 0.392162 | 3_3:+75839506 | Msa0473260:intron |
| AGGACGATTGATAGGCAAAT+AGG | 0.394105 | 3_3:+75841346 | Msa0473260:intron |
| TCTTAGCTGCAAGACACTTA+AGG | 0.399730 | 3_3:+75841326 | Msa0473260:intron |
| TACATGTCAAATATTTGAAT+GGG | 0.424772 | 3_3:+75841259 | Msa0473260:intron |
| GACACTTAAGGACGATTGAT+AGG | 0.454087 | 3_3:+75841338 | Msa0473260:intron |
| ATACATGTCAAATATTTGAA+TGG | 0.457197 | 3_3:+75841258 | Msa0473260:intron |
| TATTCTAGAAATAGGTTATG+TGG | 0.470056 | 3_3:+75839485 | Msa0473260:intron |
| TCTTCTGAACAAGGCGGAGG+TGG | 0.475561 | 3_3:-75842505 | Msa0473270:CDS |
| ATACAGCATGAAATCAAGAA+TGG | 0.482965 | 3_3:+75839424 | Msa0473260:intron |
| GGTTTGATTCGCATGCCATT+CGG | 0.494201 | 3_3:+75842563 | Msa0473260:intron |
| CTCCGCCTTGTTCAGAAGAT+CGG | 0.504922 | 3_3:+75842509 | Msa0473260:intron |
| ATTCTAGATCTAAAAGAAAG+TGG | 0.520543 | 3_3:+75839540 | Msa0473260:intron |
| TACAGCATGAAATCAAGAAT+GGG | 0.520608 | 3_3:+75839425 | Msa0473260:intron |
| TAAGCTAAGGCCGTCGATGA+TGG | 0.526649 | 3_3:-75841373 | Msa0473270:intron |
| TCCCTCCTTCTTCTTCACAT+CGG | 0.528047 | 3_3:+75842473 | Msa0473260:intron |
| AGAAGCCGATGTGAAGAAGA+AGG | 0.532467 | 3_3:-75842478 | Msa0473270:CDS |
| CGATCTTCTGAACAAGGCGG+AGG | 0.548594 | 3_3:-75842508 | Msa0473270:CDS |
| AATATTTGAATGGGGTGCAA+AGG | 0.551607 | 3_3:+75841268 | Msa0473260:intron |
| GGGACTGAAGCGGCATGTGA+AGG | 0.554999 | 3_3:-75842454 | Msa0473270:intron |
| GTTGACTGATAACAATCCAT+TGG | 0.562982 | 3_3:-75841864 | Msa0473270:intron |
| GCCGATGTGAAGAAGAAGGA+GGG | 0.579212 | 3_3:-75842474 | Msa0473270:CDS |
| GCTTTCCGATCTTCTGAACA+AGG | 0.584830 | 3_3:-75842514 | Msa0473270:CDS |
| AAGAGGAAGCTGACTATGTG+GGG | 0.591978 | 3_3:-75841898 | Msa0473270:CDS |
| CTCAAAATTGAATGTGACGT+CGG | 0.609907 | 3_3:-75842541 | Msa0473270:CDS |
| AACGATAAATGGAAACCGAA+TGG | 0.612701 | 3_3:-75842578 | None:intergenic |
| GAAGAGGAAGCTGACTATGT+GGG | 0.616858 | 3_3:-75841899 | Msa0473270:CDS |
| AATAGGAACACCATCATCGA+CGG | 0.635123 | 3_3:+75841363 | Msa0473260:intron |
| TCAGCTCGGATATGATGAAG+AGG | 0.636784 | 3_3:-75841915 | Msa0473270:intron |
| AGCCGATGTGAAGAAGAAGG+AGG | 0.642473 | 3_3:-75842475 | Msa0473270:CDS |
| AGAAGAAGGAGGGACTGAAG+CGG | 0.644736 | 3_3:-75842464 | Msa0473270:CDS |
| TGAAGAGGAAGCTGACTATG+TGG | 0.652797 | 3_3:-75841900 | Msa0473270:CDS |
| TAAATGTGAACGGAGACCGA+CGG | 0.671648 | 3_3:+75841300 | Msa0473260:intron |
| ACATGTCAAATATTTGAATG+GGG | 0.675084 | 3_3:+75841260 | Msa0473260:intron |
| CTTGCAGCTAAGATAACCGT+CGG | 0.680082 | 3_3:-75841316 | Msa0473270:CDS |
| GAATTGCAGATAAATGTGAA+CGG | 0.680664 | 3_3:+75841290 | Msa0473260:intron |
| TTCCGATCTTCTGAACAAGG+CGG | 0.700783 | 3_3:-75842511 | Msa0473270:CDS |
| AGAGGAAGCTGACTATGTGG+GGG | 0.774034 | 3_3:-75841897 | Msa0473270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATTAGTATTGTAA+TGG | - | chr3_3:75841173-75841192 | Msa0473270:intron | 10.0% |
| !! | ATAAAAATTAGTATTGTAAT+GGG | - | chr3_3:75841174-75841193 | Msa0473270:intron | 10.0% |
| !! | AAGAATGACTTATATTAAAA+TGG | + | chr3_3:75840411-75840430 | Msa0473260:intron | 15.0% |
| !!! | ATTTTAATATAAGTCATTCT+TGG | - | chr3_3:75840410-75840429 | Msa0473270:intron | 15.0% |
| !! | TAAAAAAATTGCTTACAATT+AGG | - | chr3_3:75841343-75841362 | Msa0473270:CDS | 15.0% |
| !! | ATTCAAAATACTACAAAATA+TGG | + | chr3_3:75841729-75841748 | Msa0473260:intron | 15.0% |
| !!! | ATATTTTGTAGTATTTTGAA+TGG | - | chr3_3:75841728-75841747 | Msa0473270:intron | 15.0% |
| !!! | TATTTTGTAGTATTTTGAAT+GGG | - | chr3_3:75841729-75841748 | Msa0473270:intron | 15.0% |
| !!! | TCATTATAATCCATATTTTT+AGG | - | chr3_3:75841839-75841858 | Msa0473270:intron | 15.0% |
| !! | TAAAAAGAAAAAAACATTGT+CGG | + | chr3_3:75841928-75841947 | Msa0473260:intron | 15.0% |
| !!! | TCCAATTAATTTTGTATCAA+TGG | - | chr3_3:75840218-75840237 | Msa0473270:intron | 20.0% |
| !! | TCCATTGATACAAAATTAAT+TGG | + | chr3_3:75840222-75840241 | Msa0473260:intron | 20.0% |
| !! | TAGAACTCTTAAATAAGAAA+TGG | + | chr3_3:75840327-75840346 | Msa0473260:intron | 20.0% |
| !! | TACATGTCAAATATTTGAAT+GGG | + | chr3_3:75840663-75840682 | Msa0473260:intron | 20.0% |
| !! | ATACATGTCAAATATTTGAA+TGG | + | chr3_3:75840664-75840683 | Msa0473260:intron | 20.0% |
| !! | GAAGATAAATAATCAAAGAA+TGG | + | chr3_3:75840692-75840711 | Msa0473260:intron | 20.0% |
| !! | TTTATTTGTCCATTTGATTA+TGG | - | chr3_3:75840879-75840898 | Msa0473270:intron | 20.0% |
| !! | TTTATTTGAATGAATGACAT+TGG | - | chr3_3:75841602-75841621 | Msa0473270:intron | 20.0% |
| !!! | GACAAAATTCTATATTTTGT+TGG | - | chr3_3:75841675-75841694 | Msa0473270:intron | 20.0% |
| !!! | ATTTTGTAGTATTTTGAATG+GGG | - | chr3_3:75841730-75841749 | Msa0473270:intron | 20.0% |
| !!! | ATATAGCATAATGTGTATTT+TGG | - | chr3_3:75841753-75841772 | Msa0473270:intron | 20.0% |
| !!! | AATATAAGCATATACCTTTT+GGG | + | chr3_3:75841866-75841885 | Msa0473260:intron | 20.0% |
| !! | AAATTCAATCAGATTCTTTA+AGG | + | chr3_3:75842158-75842177 | Msa0473260:intron | 20.0% |
| !!! | TTTTCATTATTTCTTTTTGC+AGG | - | chr3_3:75842243-75842262 | Msa0473270:intron | 20.0% |
| !! | AAAAAGATGTTCACAAAAAA+AGG | - | chr3_3:75842333-75842352 | Msa0473270:intron | 20.0% |
| !!! | CGATTATATATTCTAGAAAT+AGG | + | chr3_3:75842445-75842464 | Msa0473260:intron | 20.0% |
| !! | ATAAAATGTTGATGTTCATT+AGG | + | chr3_3:75842527-75842546 | Msa0473260:intron | 20.0% |
| !!! | TTTTCAATAGATATCCATTT+TGG | - | chr3_3:75842569-75842588 | Msa0473270:CDS | 20.0% |
| !! | GTGAAAAGATGAACAATTTT+GGG | + | chr3_3:75839704-75839723 | Msa0473260:intron | 25.0% |
| !! | AGTGAAAAGATGAACAATTT+TGG | + | chr3_3:75839705-75839724 | Msa0473260:intron | 25.0% |
| ! | AAATTGAATAGTCATCGAAA+CGG | + | chr3_3:75839741-75839760 | Msa0473260:intron | 25.0% |
| ! | GAATTCAAAATTAAATAGCC+AGG | + | chr3_3:75839816-75839835 | Msa0473260:intron | 25.0% |
| ! | TCACTTTCTTAATGCAATTA+AGG | + | chr3_3:75839838-75839857 | Msa0473260:intron | 25.0% |
| ! | AAACAGAAACACAGTAATTT+AGG | + | chr3_3:75839981-75840000 | Msa0473260:intron | 25.0% |
| !! | TAAAAGCATGTTTATACCAA+TGG | + | chr3_3:75840074-75840093 | Msa0473260:intron | 25.0% |
| ! | ATAATAAACATTGCAAGCTT+AGG | - | chr3_3:75840301-75840320 | Msa0473270:intron | 25.0% |
| ! | TTAATATAAGTCATTCTTGG+TGG | - | chr3_3:75840413-75840432 | Msa0473270:intron | 25.0% |
| ! | GTTTCAAAACAAGTAAGTTT+AGG | - | chr3_3:75840452-75840471 | Msa0473270:intron | 25.0% |
| ! | ACATGTCAAATATTTGAATG+GGG | + | chr3_3:75840662-75840681 | Msa0473260:intron | 25.0% |
| ! | AAATGGACAAATAAAACCTT+CGG | + | chr3_3:75840874-75840893 | Msa0473260:intron | 25.0% |
| !!! | CATTTTCCTGTTTTTGTTTT+TGG | - | chr3_3:75840922-75840941 | Msa0473270:intron | 25.0% |
| ! | TTTCAGAAGTTATCAAATTG+TGG | + | chr3_3:75841078-75841097 | Msa0473260:intron | 25.0% |
| ! | GATAACTATGCATACTATTA+TGG | - | chr3_3:75841110-75841129 | Msa0473270:intron | 25.0% |
| !!! | GCAATTTTTTTATCTCATGT+AGG | + | chr3_3:75841335-75841354 | Msa0473260:intron | 25.0% |
| !!! | TCTGAAATGTGAAAATGTTT+TGG | - | chr3_3:75841510-75841529 | Msa0473270:intron | 25.0% |
| !!! | TAATGTGTATTTTGGTTCAT+CGG | - | chr3_3:75841761-75841780 | Msa0473270:intron | 25.0% |
| !! | ATATAAGCATATACCTTTTG+GGG | + | chr3_3:75841865-75841884 | Msa0473260:intron | 25.0% |
| !! | CAATATAAGCATATACCTTT+TGG | + | chr3_3:75841867-75841886 | Msa0473260:intron | 25.0% |
| ! | TTTCTTTCCATTACAATAAC+TGG | + | chr3_3:75841969-75841988 | Msa0473260:intron | 25.0% |
| !! | TTATTGTAATGGAAAGAAAC+AGG | - | chr3_3:75841970-75841989 | Msa0473270:intron | 25.0% |
| ! | ATTTGTGGTGAAAACAAATA+GGG | - | chr3_3:75842002-75842021 | Msa0473270:intron | 25.0% |
| !!! | TTGTGACTTTAAAATGATAC+AGG | - | chr3_3:75842072-75842091 | Msa0473270:intron | 25.0% |
| !! | TTTAAAATGATACAGGTTAG+TGG | - | chr3_3:75842079-75842098 | Msa0473270:intron | 25.0% |
| ! | TTAAAATGATACAGGTTAGT+GGG | - | chr3_3:75842080-75842099 | Msa0473270:intron | 25.0% |
| ! | AAGCATCACAATATTGAATT+TGG | + | chr3_3:75842288-75842307 | Msa0473260:intron | 25.0% |
| ! | ATTCTAGATCTAAAAGAAAG+TGG | + | chr3_3:75842382-75842401 | Msa0473260:intron | 25.0% |
| !! | TATTCTAGAAATAGGTTATG+TGG | + | chr3_3:75842437-75842456 | Msa0473260:intron | 25.0% |
| ! | GTTTTGTGAATTTTCTCTCA+AGG | - | chr3_3:75839493-75839512 | Msa0473270:three_prime_UTR | 30.0% |
| CGCAATTCAATTCATAGAAA+GGG | + | chr3_3:75839530-75839549 | Msa0473260:intron | 30.0% | |
| ACGCAATTCAATTCATAGAA+AGG | + | chr3_3:75839531-75839550 | Msa0473260:intron | 30.0% | |
| ! | AAGAATGATTGACTCCATAA+GGG | + | chr3_3:75839598-75839617 | Msa0473260:intron | 30.0% |
| ! | AAAGAATGATTGACTCCATA+AGG | + | chr3_3:75839599-75839618 | Msa0473260:intron | 30.0% |
| ! | CGACTCAGATTTTCAAAAAT+CGG | - | chr3_3:75839656-75839675 | Msa0473270:CDS | 30.0% |
| TTCCATGTTGATATATGAAG+CGG | + | chr3_3:75839883-75839902 | Msa0473260:intron | 30.0% | |
| TGTTGAATCTGTGTTAGTAA+TGG | - | chr3_3:75840098-75840117 | Msa0473270:intron | 30.0% | |
| CTTGAATCAATTATTGATGC+AGG | - | chr3_3:75840125-75840144 | Msa0473270:intron | 30.0% | |
| TTCTTTATTGCCTTGCTTTA+TGG | + | chr3_3:75840251-75840270 | Msa0473260:intron | 30.0% | |
| GCTTGCAATGTTTATTATGA+TGG | + | chr3_3:75840299-75840318 | Msa0473260:intron | 30.0% | |
| AAAATAAAAAAAGGAGCAGC+AGG | + | chr3_3:75840380-75840399 | Msa0473260:intron | 30.0% | |
| TACTACTAACAGAGAATTGA+AGG | + | chr3_3:75840503-75840522 | Msa0473260:intron | 30.0% | |
| GAATTGCAGATAAATGTGAA+CGG | + | chr3_3:75840632-75840651 | Msa0473260:intron | 30.0% | |
| TTAATCTTTGCAGAGTTCAT+TGG | - | chr3_3:75840831-75840850 | Msa0473270:intron | 30.0% | |
| ACAAATAAAACCTTCGGATA+AGG | + | chr3_3:75840868-75840887 | Msa0473260:intron | 30.0% | |
| ATGCATCCAAAAACAAAAAC+AGG | + | chr3_3:75840931-75840950 | Msa0473260:intron | 30.0% | |
| TATCAAATTGTGGTTACCTT+TGG | + | chr3_3:75841068-75841087 | Msa0473260:intron | 30.0% | |
| ! | CTCATGTAGGATTTTATCTT+TGG | + | chr3_3:75841322-75841341 | Msa0473260:intron | 30.0% |
| AACCTGATTTCATATCCTTT+GGG | + | chr3_3:75841372-75841391 | Msa0473260:intron | 30.0% | |
| ! | GAAATCAGGTTGTCAAAAAA+TGG | - | chr3_3:75841381-75841400 | Msa0473270:intron | 30.0% |
| ! | TGGCTATACTTTTATACCAA+AGG | - | chr3_3:75841401-75841420 | Msa0473270:intron | 30.0% |
| ATACCAAAGGATATGAAATC+AGG | - | chr3_3:75841414-75841433 | Msa0473270:intron | 30.0% | |
| !! | GAAATGTGAAAATGTTTTGG+CGG | - | chr3_3:75841513-75841532 | Msa0473270:intron | 30.0% |
| TGAACTATTGGGAAATCATA+TGG | - | chr3_3:75841555-75841574 | Msa0473270:intron | 30.0% | |
| !! | TATTTTGTTGGCTGAACTAT+TGG | - | chr3_3:75841687-75841706 | Msa0473270:intron | 30.0% |
| !! | ATTTTGTTGGCTGAACTATT+GGG | - | chr3_3:75841688-75841707 | Msa0473270:intron | 30.0% |
| ACATTCAAGGAGAAAAATTG+CGG | + | chr3_3:75841808-75841827 | Msa0473260:intron | 30.0% | |
| CATTTGTGGTGAAAACAAAT+AGG | - | chr3_3:75842001-75842020 | Msa0473270:intron | 30.0% | |
| !! | ATTCAACTGAGAGTATTCAT+AGG | - | chr3_3:75842045-75842064 | Msa0473270:intron | 30.0% |
| !! | TTCAACTGAGAGTATTCATA+GGG | - | chr3_3:75842046-75842065 | Msa0473270:intron | 30.0% |
| TAAAATGATACAGGTTAGTG+GGG | - | chr3_3:75842081-75842100 | Msa0473270:intron | 30.0% | |
| ! | GGGGATTAAAATAGTCTTTT+TGG | - | chr3_3:75842101-75842120 | Msa0473270:intron | 30.0% |
| ! | ATTTCTTTTTGCAGGTTATG+TGG | - | chr3_3:75842251-75842270 | Msa0473270:intron | 30.0% |
| TAGATCTAGAAATAGGTTAC+TGG | + | chr3_3:75842409-75842428 | Msa0473260:intron | 30.0% | |
| GGTTATGTAGATCTAGAAAT+AGG | + | chr3_3:75842416-75842435 | Msa0473260:intron | 30.0% | |
| TACAGCATGAAATCAAGAAT+GGG | + | chr3_3:75842497-75842516 | Msa0473260:intron | 30.0% | |
| ATACAGCATGAAATCAAGAA+TGG | + | chr3_3:75842498-75842517 | Msa0473260:intron | 30.0% | |
| CTCAAAATTGAATGTGACGT+CGG | - | chr3_3:75839378-75839397 | Msa0473270:three_prime_UTR | 35.0% | |
| ! | CTCAGATTTTCAAAAATCGG+AGG | - | chr3_3:75839659-75839678 | Msa0473270:intron | 35.0% |
| ! | CTATTCAATTTCGTCGATTG+AGG | - | chr3_3:75839750-75839769 | Msa0473270:intron | 35.0% |
| AACCGCTTCATATATCAACA+TGG | - | chr3_3:75839878-75839897 | Msa0473270:intron | 35.0% | |
| ! | TGTTTCTGTTTATCTCAGCT+CGG | - | chr3_3:75839990-75840009 | Msa0473270:intron | 35.0% |
| GTTGACTGATAACAATCCAT+TGG | - | chr3_3:75840055-75840074 | Msa0473270:intron | 35.0% | |
| TGGAGAATTTCCATAAAGCA+AGG | - | chr3_3:75840238-75840257 | Msa0473270:intron | 35.0% | |
| AGTAAGTTTAGGCCAACTAT+AGG | - | chr3_3:75840463-75840482 | Msa0473270:intron | 35.0% | |
| AACCTTTCTGATCCTATAGT+TGG | + | chr3_3:75840478-75840497 | Msa0473260:intron | 35.0% | |
| AACTATAGGATCAGAAAGGT+TGG | - | chr3_3:75840477-75840496 | Msa0473270:intron | 35.0% | |
| TCTGTTAGTAGTATCTCGAT+CGG | - | chr3_3:75840510-75840529 | Msa0473270:intron | 35.0% | |
| TAAGGCCAACAAATAAGCTA+AGG | - | chr3_3:75840533-75840552 | Msa0473270:intron | 35.0% | |
| AATATTTGAATGGGGTGCAA+AGG | + | chr3_3:75840654-75840673 | Msa0473260:intron | 35.0% | |
| CTCTGCAAAGATTAACGAAA+AGG | + | chr3_3:75840826-75840845 | Msa0473260:intron | 35.0% | |
| CTAGCTTGACCATAATCAAA+TGG | + | chr3_3:75840891-75840910 | Msa0473260:intron | 35.0% | |
| CATTTGATTATGGTCAAGCT+AGG | - | chr3_3:75840889-75840908 | Msa0473270:intron | 35.0% | |
| TATGGTCAAGCTAGGTAAAT+TGG | - | chr3_3:75840897-75840916 | Msa0473270:intron | 35.0% | |
| ! | ATTGAGCATCGCTGTATATA+GGG | - | chr3_3:75840956-75840975 | Msa0473270:intron | 35.0% |
| TCCTACTGAATAATGACCAA+AGG | - | chr3_3:75841049-75841068 | Msa0473270:intron | 35.0% | |
| ACCTTTGGTCATTATTCAGT+AGG | + | chr3_3:75841053-75841072 | Msa0473260:intron | 35.0% | |
| ! | AGTATTGTAATGGGAATGTG+TGG | - | chr3_3:75841183-75841202 | Msa0473270:intron | 35.0% |
| ATCAGGATTGTAGGAATCTA+TGG | - | chr3_3:75841213-75841232 | Msa0473270:intron | 35.0% | |
| ! | CTCTTGGATGGATTCATATA+TGG | + | chr3_3:75841289-75841308 | Msa0473260:intron | 35.0% |
| CATATATGAATCCATCCAAG+AGG | - | chr3_3:75841287-75841306 | Msa0473270:CDS | 35.0% | |
| CTTACAATTAGGTTTCCCAA+AGG | - | chr3_3:75841354-75841373 | Msa0473270:CDS | 35.0% | |
| TTCCCAAAGGATATGAAATC+AGG | - | chr3_3:75841367-75841386 | Msa0473270:CDS | 35.0% | |
| CAACCTGATTTCATATCCTT+TGG | + | chr3_3:75841373-75841392 | Msa0473260:intron | 35.0% | |
| GAAATCAGGTCGTCAAAAAA+TGG | - | chr3_3:75841428-75841447 | Msa0473270:intron | 35.0% | |
| AAGCCCTATAAAATACCATC+AGG | - | chr3_3:75841471-75841490 | Msa0473270:intron | 35.0% | |
| ! | GAGCCTGATGGTATTTTATA+GGG | + | chr3_3:75841477-75841496 | Msa0473260:intron | 35.0% |
| ! | TGAGCCTGATGGTATTTTAT+AGG | + | chr3_3:75841478-75841497 | Msa0473260:intron | 35.0% |
| TTTGGCGGTAATTTGAGAAT+TGG | - | chr3_3:75841528-75841547 | Msa0473270:intron | 35.0% | |
| !! | ATGAATGACATTGGTGTCAT+TGG | - | chr3_3:75841611-75841630 | Msa0473270:intron | 35.0% |
| CAACGTTCCAGTTATTGTAA+TGG | - | chr3_3:75841959-75841978 | Msa0473270:intron | 35.0% | |
| AAAATGATACAGGTTAGTGG+GGG | - | chr3_3:75842082-75842101 | Msa0473270:intron | 35.0% | |
| AAGGCAATTGCTTCTTTCAT+TGG | + | chr3_3:75842139-75842158 | Msa0473260:intron | 35.0% | |
| TGAAATCAAGAATGGGAGTT+TGG | + | chr3_3:75842490-75842509 | Msa0473260:intron | 35.0% | |
| ! | CGACGTCACATTCAATTTTG+AGG | + | chr3_3:75839380-75839399 | Msa0473260:intron | 40.0% |
| ! | TGACTCCATAAGGGTTCTAA+GGG | + | chr3_3:75839589-75839608 | Msa0473260:intron | 40.0% |
| TTGACTCCATAAGGGTTCTA+AGG | + | chr3_3:75839590-75839609 | Msa0473260:intron | 40.0% | |
| !! | AATCGGAGGTGTTGAATGTT+CGG | - | chr3_3:75839673-75839692 | Msa0473270:intron | 40.0% |
| ! | TTCGTCGATTGAGGTAAGAA+TGG | - | chr3_3:75839759-75839778 | Msa0473270:intron | 40.0% |
| CGATTGAGGTAAGAATGGAA+TGG | - | chr3_3:75839764-75839783 | Msa0473270:intron | 40.0% | |
| GAGGTAAGAATGGAATGGAA+TGG | - | chr3_3:75839769-75839788 | Msa0473270:intron | 40.0% | |
| GTGTTACATCAGTTTAGACC+TGG | - | chr3_3:75839795-75839814 | Msa0473270:intron | 40.0% | |
| !! | ACAGTTCTTAAACTTGCTGC+AGG | + | chr3_3:75840353-75840372 | Msa0473260:intron | 40.0% |
| TAGTAGTATCTCGATCGGTA+AGG | - | chr3_3:75840515-75840534 | Msa0473270:intron | 40.0% | |
| AATAGGAACACCATCATCGA+CGG | + | chr3_3:75840559-75840578 | Msa0473260:intron | 40.0% | |
| AGGACGATTGATAGGCAAAT+AGG | + | chr3_3:75840576-75840595 | Msa0473260:intron | 40.0% | |
| GACACTTAAGGACGATTGAT+AGG | + | chr3_3:75840584-75840603 | Msa0473260:intron | 40.0% | |
| TCTTAGCTGCAAGACACTTA+AGG | + | chr3_3:75840596-75840615 | Msa0473260:intron | 40.0% | |
| ATACTAGGTTCCTTATCCGA+AGG | - | chr3_3:75840855-75840874 | Msa0473270:intron | 40.0% | |
| ! | CATTGAGCATCGCTGTATAT+AGG | - | chr3_3:75840955-75840974 | Msa0473270:intron | 40.0% |
| TTGTAGGAATCTATGGCACA+TGG | - | chr3_3:75841220-75841239 | Msa0473270:intron | 40.0% | |
| TATGAATCCATCCAAGAGGA+AGG | - | chr3_3:75841291-75841310 | Msa0473270:CDS | 40.0% | |
| CGACCTGATTTCATATCCTT+TGG | + | chr3_3:75841420-75841439 | Msa0473260:intron | 40.0% | |
| ! | AGAATTGGTGGCTGAACTAT+TGG | - | chr3_3:75841543-75841562 | Msa0473270:intron | 40.0% |
| ! | GAATTGGTGGCTGAACTATT+GGG | - | chr3_3:75841544-75841563 | Msa0473270:intron | 40.0% |
| GAACTCGCATAACACATTCA+AGG | + | chr3_3:75841821-75841840 | Msa0473260:intron | 40.0% | |
| !!! | CCTTTTGGGGCCTAAAAATA+TGG | + | chr3_3:75841852-75841871 | Msa0473260:intron | 40.0% |
| !!! | CCATATTTTTAGGCCCCAAA+AGG | - | chr3_3:75841849-75841868 | Msa0473270:intron | 40.0% |
| AACAGGATCTGCTACATTTG+TGG | - | chr3_3:75841987-75842006 | Msa0473270:intron | 40.0% | |
| ! | GGTTTGATTCGCATGCCATT+CGG | + | chr3_3:75839359-75839378 | Msa0473260:intron | 45.0% |
| GCTTTCCGATCTTCTGAACA+AGG | - | chr3_3:75839405-75839424 | Msa0473270:three_prime_UTR | 45.0% | |
| TTCCGATCTTCTGAACAAGG+CGG | - | chr3_3:75839408-75839427 | Msa0473270:three_prime_UTR | 45.0% | |
| AGAAGCCGATGTGAAGAAGA+AGG | - | chr3_3:75839441-75839460 | Msa0473270:three_prime_UTR | 45.0% | |
| TCCCTCCTTCTTCTTCACAT+CGG | + | chr3_3:75839449-75839468 | Msa0473260:intron | 45.0% | |
| TCATCCCCTTAGAACCCTTA+TGG | - | chr3_3:75839581-75839600 | Msa0473270:CDS | 45.0% | |
| !! | GACTCCATAAGGGTTCTAAG+GGG | + | chr3_3:75839588-75839607 | Msa0473260:intron | 45.0% |
| !! | ATCGGAGGTGTTGAATGTTC+GGG | - | chr3_3:75839674-75839693 | Msa0473270:intron | 45.0% |
| AGTCATCGAAACGGAGAAGA+AGG | + | chr3_3:75839732-75839751 | Msa0473260:intron | 45.0% | |
| TCAGCTCGGATATGATGAAG+AGG | - | chr3_3:75840004-75840023 | Msa0473270:intron | 45.0% | |
| TGAAGAGGAAGCTGACTATG+TGG | - | chr3_3:75840019-75840038 | Msa0473270:intron | 45.0% | |
| GAAGAGGAAGCTGACTATGT+GGG | - | chr3_3:75840020-75840039 | Msa0473270:intron | 45.0% | |
| AAGAGGAAGCTGACTATGTG+GGG | - | chr3_3:75840021-75840040 | Msa0473270:intron | 45.0% | |
| GGCCAACTATAGGATCAGAA+AGG | - | chr3_3:75840473-75840492 | Msa0473270:intron | 45.0% | |
| GACGGCCTTAGCTTATTTGT+TGG | + | chr3_3:75840541-75840560 | Msa0473260:intron | 45.0% | |
| CTTGCAGCTAAGATAACCGT+CGG | - | chr3_3:75840603-75840622 | Msa0473270:intron | 45.0% | |
| TAAATGTGAACGGAGACCGA+CGG | + | chr3_3:75840622-75840641 | Msa0473260:intron | 45.0% | |
| GCAGAGTTCATTGGCATACT+AGG | - | chr3_3:75840840-75840859 | Msa0473270:intron | 45.0% | |
| GAATGTGTGGAGACTACATC+AGG | - | chr3_3:75841196-75841215 | Msa0473270:intron | 45.0% | |
| GGAGACTACATCAGGATTGT+AGG | - | chr3_3:75841204-75841223 | Msa0473270:intron | 45.0% | |
| CTTTGGATTCTCCTTCCTCT+TGG | + | chr3_3:75841305-75841324 | Msa0473260:intron | 45.0% | |
| TACCATCAGGCTCATAGCTT+TGG | - | chr3_3:75841484-75841503 | Msa0473270:intron | 45.0% | |
| GGCGGTAATTTGAGAATTGG+TGG | - | chr3_3:75841531-75841550 | Msa0473270:intron | 45.0% | |
| !! | GATAAAAATAAAATAAAAAA+AGG | + | chr3_3:75840389-75840408 | Msa0473260:intron | 5.0% |
| ! | CTCCGCCTTGTTCAGAAGAT+CGG | + | chr3_3:75839413-75839432 | Msa0473260:intron | 50.0% |
| AGCCGATGTGAAGAAGAAGG+AGG | - | chr3_3:75839444-75839463 | Msa0473270:three_prime_UTR | 50.0% | |
| GCCGATGTGAAGAAGAAGGA+GGG | - | chr3_3:75839445-75839464 | Msa0473270:three_prime_UTR | 50.0% | |
| AGAAGAAGGAGGGACTGAAG+CGG | - | chr3_3:75839455-75839474 | Msa0473270:three_prime_UTR | 50.0% | |
| GTCGTCTCAAGCGTTAGAGA+GGG | + | chr3_3:75839640-75839659 | Msa0473260:intron | 50.0% | |
| AGTCGTCTCAAGCGTTAGAG+AGG | + | chr3_3:75839641-75839660 | Msa0473260:intron | 50.0% | |
| AGAGGAAGCTGACTATGTGG+GGG | - | chr3_3:75840022-75840041 | Msa0473270:intron | 50.0% | |
| TAAGCTAAGGCCGTCGATGA+TGG | - | chr3_3:75840546-75840565 | Msa0473270:intron | 50.0% | |
| GGATTCTCCTTCCTCTTGGA+TGG | + | chr3_3:75841301-75841320 | Msa0473260:intron | 50.0% | |
| TGCCAAAGCTATGAGCCTGA+TGG | + | chr3_3:75841489-75841508 | Msa0473260:intron | 50.0% | |
| CGATCTTCTGAACAAGGCGG+AGG | - | chr3_3:75839411-75839430 | Msa0473270:three_prime_UTR | 55.0% | |
| TCTTCTGAACAAGGCGGAGG+TGG | - | chr3_3:75839414-75839433 | Msa0473270:three_prime_UTR | 55.0% | |
| GGGACTGAAGCGGCATGTGA+AGG | - | chr3_3:75839465-75839484 | Msa0473270:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 75839349 | 75842592 | 75839349 | ID=Msa0473270;Name=Msa0473270 |
| chr3_3 | mRNA | 75839349 | 75842592 | 75839349 | ID=Msa0473270-mRNA-1;Parent=Msa0473270;Name=Msa0473270-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0.5|1|1|1|4|180|159 |
| chr3_3 | exon | 75839349 | 75839676 | 75839349 | ID=Msa0473270-mRNA-1:exon:19768;Parent=Msa0473270-mRNA-1 |
| chr3_3 | exon | 75841262 | 75841386 | 75841262 | ID=Msa0473270-mRNA-1:exon:19767;Parent=Msa0473270-mRNA-1 |
| chr3_3 | exon | 75841865 | 75841933 | 75841865 | ID=Msa0473270-mRNA-1:exon:19766;Parent=Msa0473270-mRNA-1 |
| chr3_3 | exon | 75842455 | 75842592 | 75842455 | ID=Msa0473270-mRNA-1:exon:19765;Parent=Msa0473270-mRNA-1 |
| chr3_3 | CDS | 75842455 | 75842592 | 75842455 | ID=Msa0473270-mRNA-1:cds;Parent=Msa0473270-mRNA-1 |
| chr3_3 | CDS | 75841865 | 75841933 | 75841865 | ID=Msa0473270-mRNA-1:cds;Parent=Msa0473270-mRNA-1 |
| chr3_3 | CDS | 75841262 | 75841386 | 75841262 | ID=Msa0473270-mRNA-1:cds;Parent=Msa0473270-mRNA-1 |
| chr3_3 | CDS | 75839529 | 75839676 | 75839529 | ID=Msa0473270-mRNA-1:cds;Parent=Msa0473270-mRNA-1 |
| chr3_3 | three_prime_UTR | 75839349 | 75839528 | 75839349 | ID=Msa0473270-mRNA-1:three_prime_utr;Parent=Msa0473270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
