AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0731500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0731500 MtrunA17_Chr5g0425471 96.931 782 21 1 1 779 1 782 0.0 1574
Msa0731500 MtrunA17_Chr5g0425431 91.410 780 66 1 1 779 1 780 0.0 1471
Msa0731500 MtrunA17_Chr5g0425451 90.153 782 74 1 1 779 1 782 0.0 1447
Msa0731500 MtrunA17_Chr5g0425531 85.860 785 105 3 1 779 1 785 0.0 1382
Msa0731500 MtrunA17_Chr3g0115601 70.323 775 221 4 6 779 10 776 0.0 1165
Msa0731500 MtrunA17_Chr5g0411571 48.481 790 367 12 11 779 12 782 0.0 763
Msa0731500 MtrunA17_Chr1g0207281 49.933 751 359 12 27 769 34 775 0.0 743
Msa0731500 MtrunA17_Chr2g0294751 48.267 750 363 10 32 777 26 754 0.0 731
Msa0731500 MtrunA17_Chr2g0278761 48.413 756 361 12 33 779 40 775 0.0 727
Msa0731500 MtrunA17_Chr1g0194841 46.658 778 385 12 5 777 3 755 0.0 721
Msa0731500 MtrunA17_Chr7g0269871 47.067 750 376 10 33 777 28 761 0.0 719
Msa0731500 MtrunA17_Chr4g0050591 46.958 756 372 12 33 779 39 774 0.0 714
Msa0731500 MtrunA17_Chr6g0461231 27.463 670 357 30 33 635 14 621 4.79e-43 166
Msa0731500 MtrunA17_Chr6g0461191 27.914 652 335 27 54 635 35 621 1.38e-42 164
Msa0731500 MtrunA17_Chr2g0292341 27.734 631 329 27 54 610 37 614 1.13e-40 159
Msa0731500 MtrunA17_Chr3g0104081 26.866 603 349 22 47 592 22 589 1.33e-40 158
Msa0731500 MtrunA17_Chr3g0118971 27.231 650 354 28 54 641 35 627 3.29e-40 157
Msa0731500 MtrunA17_Chr7g0253561 27.477 666 334 29 47 635 4 597 1.34e-39 155
Msa0731500 MtrunA17_Chr6g0461211 28.025 653 333 30 54 635 35 621 5.63e-39 153
Msa0731500 MtrunA17_Chr6g0461221 26.788 657 344 29 54 639 36 626 2.26e-38 152
Msa0731500 MtrunA17_Chr5g0429581 25.578 606 354 22 49 594 7 575 1.72e-36 145
Msa0731500 MtrunA17_Chr5g0429541 25.336 596 344 22 54 594 12 561 9.19e-33 134
Msa0731500 MtrunA17_Chr7g0253551 27.714 433 243 19 47 433 29 437 4.91e-26 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0731500 AT1G78060.1 63.745 753 262 7 31 779 22 767 0.0 1006
Msa0731500 AT5G10560.1 49.174 787 373 8 12 777 10 790 0.0 787
Msa0731500 AT3G19620.1 49.933 747 349 14 33 769 27 758 0.0 747
Msa0731500 AT5G09730.1 49.736 758 356 13 31 779 32 773 0.0 737
Msa0731500 AT5G64570.1 48.649 777 375 12 12 779 23 784 0.0 729
Msa0731500 AT1G02640.1 47.240 779 383 11 3 777 4 758 0.0 725
Msa0731500 AT5G49360.1 47.375 781 376 17 8 777 14 770 0.0 710
Msa0731500 AT5G64570.3 52.249 578 266 8 12 587 23 592 0.0 606
Msa0731500 AT5G64570.2 48.830 641 305 11 147 779 1 626 0.0 603
Msa0731500 AT5G09700.1 45.194 489 255 7 297 779 45 526 2.07e-135 411
Msa0731500 AT3G47040.4 27.019 644 372 26 47 638 10 607 1.53e-43 167
Msa0731500 AT3G47010.1 26.677 626 363 27 44 610 8 596 1.79e-41 161
Msa0731500 AT3G47040.1 26.324 661 380 27 47 638 10 632 6.18e-41 160
Msa0731500 AT3G47000.1 26.480 642 372 25 47 635 10 604 4.47e-40 157
Msa0731500 AT3G47010.2 26.518 626 363 28 44 610 8 595 8.17e-40 156
Msa0731500 AT3G47050.1 27.005 611 349 23 43 594 6 578 3.04e-39 154
Msa0731500 AT5G04885.3 25.280 625 361 24 53 614 36 617 4.04e-37 149
Msa0731500 AT5G04885.1 25.280 625 361 24 53 614 36 617 4.04e-37 149
Msa0731500 AT5G04885.2 25.280 625 361 24 53 614 53 634 5.33e-37 148
Msa0731500 AT3G47040.3 29.885 435 238 17 47 433 10 425 1.59e-34 137
Msa0731500 AT5G20950.2 28.502 414 225 16 57 421 36 427 2.09e-33 137
Msa0731500 AT5G20950.1 28.502 414 225 16 57 421 36 427 2.09e-33 137
Msa0731500 AT5G20950.3 28.502 414 225 16 57 421 114 505 2.83e-33 137
Msa0731500 AT3G47000.3 29.009 424 231 16 47 421 10 412 2.54e-32 131
Msa0731500 AT3G47040.2 25.298 672 381 29 47 638 10 640 6.32e-32 132
Msa0731500 AT5G20940.1 27.241 580 324 24 83 634 112 621 8.67e-32 132
Msa0731500 AT3G47010.4 27.938 451 251 19 44 445 8 433 1.30e-31 129
Msa0731500 AT3G62710.1 26.059 614 346 28 59 634 105 648 2.19e-30 128
Msa0731500 AT3G47010.3 26.637 443 270 21 193 610 5 417 8.82e-27 114
Msa0731500 AT3G47050.2 27.733 375 213 12 43 374 6 365 9.21e-26 110
Msa0731500 AT3G47000.2 25.758 462 289 19 191 635 3 427 1.93e-24 107

Find 215 sgRNAs with CRISPR-Local

Find 425 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAATTGGAGGGATTATT+TGG 0.068417 5_1:-42408078 Msa0731500:CDS
AACAACTTTAGATGATTTAT+TGG 0.151178 5_1:+42408444 None:intergenic
AATAAGTGATTATGTTATTT+TGG 0.156153 5_1:-42408272 Msa0731500:CDS
CACCAAACATAAACATATTT+AGG 0.158019 5_1:-42411756 Msa0731500:CDS
AAATTGTAATTTGCACAATT+TGG 0.173131 5_1:+42410532 None:intergenic
TTCTAAGAAGCCGGTTATTT+TGG 0.173735 5_1:-42408149 Msa0731500:CDS
ATAATCATGATAATATATTT+TGG 0.175383 5_1:-42406256 Msa0731500:three_prime_UTR
GCTAAGAATAATGACAAAAT+TGG 0.212120 5_1:-42408091 Msa0731500:CDS
TTTCCATTTCTACCTTTCTT+TGG 0.223144 5_1:+42406578 None:intergenic
TTTGAAGGTGGGAAACTAAT+TGG 0.240728 5_1:-42411634 Msa0731500:CDS
ATTATCATGATTATATTATC+AGG 0.244826 5_1:+42406265 None:intergenic
AAGCCCAAGGGATGACGTTT+TGG 0.261397 5_1:-42411780 Msa0731500:CDS
TCTTGTCCTCTTCCCCATCT+TGG 0.274411 5_1:+42411730 None:intergenic
GTAAATACCCTTGGAGTTAT+AGG 0.279725 5_1:-42408475 Msa0731500:CDS
TCAGGTTACTTTGCAAGATT+TGG 0.289491 5_1:-42410644 Msa0731500:intron
ACTGATTCGGTACCAAAGTT+TGG 0.290827 5_1:+42412152 None:intergenic
TAGATGATTTATTGGCATTA+GGG 0.300640 5_1:+42408452 None:intergenic
CTTGTCCTCTTCCCCATCTT+GGG 0.306397 5_1:+42411731 None:intergenic
TTAGATGATTTATTGGCATT+AGG 0.307293 5_1:+42408451 None:intergenic
GCACGGTCAATTTGAGATAT+TGG 0.320652 5_1:+42408685 None:intergenic
AGATTAGTACCAATATTAAA+AGG 0.321384 5_1:-42408394 Msa0731500:CDS
AACCGGCTTCTTAGAAGCTT+TGG 0.321699 5_1:+42408156 None:intergenic
TTTGACAGAAATGAAGTTGT+AGG 0.326662 5_1:+42406787 None:intergenic
TCTTTAGAGCAGACTTGGTT+TGG 0.327651 5_1:+42408580 None:intergenic
GGAGGTGGAAAGGGCGAAGT+TGG 0.334594 5_1:-42406512 Msa0731500:CDS
TATGTAATGGAAAGCTTGAT+TGG 0.335848 5_1:-42406289 Msa0731500:three_prime_UTR
ATTCAATCTTATCCCTTTAC+CGG 0.349169 5_1:+42412236 None:intergenic
CTGCCTATGATTTGGATCAT+TGG 0.352319 5_1:-42411573 Msa0731500:CDS
CTGATTCGGTACCAAAGTTT+GGG 0.355066 5_1:+42412153 None:intergenic
TATCGTTCTGGATGTCTTGA+TGG 0.362209 5_1:-42408343 Msa0731500:CDS
TGTACTATGCAACTATGAAA+TGG 0.363228 5_1:+42410604 None:intergenic
TTAAAATGTATGTAGGTGAT+TGG 0.364123 5_1:-42411835 Msa0731500:intron
CACAAAATTACCAAAATAAC+CGG 0.364275 5_1:+42408139 None:intergenic
TTTGGATCATTGGAAGGGTT+TGG 0.364911 5_1:-42411563 Msa0731500:CDS
TACAAGCTTGTTTCAGAGTT+GGG 0.369270 5_1:-42406698 Msa0731500:CDS
GTACTATGCAACTATGAAAT+GGG 0.369757 5_1:+42410605 None:intergenic
ACATTGGGAATTACAAATAC+TGG 0.371416 5_1:-42406641 Msa0731500:CDS
TCCCTAAATATGTTTATGTT+TGG 0.371836 5_1:+42411754 None:intergenic
AGCCAAACACATTATCGTTC+TGG 0.371977 5_1:-42408355 Msa0731500:CDS
GCTCTTGCTCAGGTTGTGTT+TGG 0.377174 5_1:-42408025 Msa0731500:CDS
TTGGACCAATTGTGCCATAT+TGG 0.378543 5_1:+42408599 None:intergenic
CAAAATTGGAGGGATTATTT+GGG 0.380232 5_1:-42408077 Msa0731500:CDS
AGATTGAATGGCAGTGTTGC+AGG 0.383130 5_1:-42412222 Msa0731500:CDS
CTTCAAGGAGATTCCTTTGA+AGG 0.385860 5_1:-42411649 Msa0731500:CDS
GGTCCAAAGGTCTACGAATT+CGG 0.387773 5_1:-42406836 Msa0731500:CDS
ACCAAACATAAACATATTTA+GGG 0.398770 5_1:-42411755 Msa0731500:CDS
AGGAATAATTTGAGTAGCTT+AGG 0.401616 5_1:+42406807 None:intergenic
TAGCCGAATTCGTAGACCTT+TGG 0.407677 5_1:+42406833 None:intergenic
CAAGCCTAGTCTTATTCTAA+TGG 0.410715 5_1:+42408645 None:intergenic
AACCCCACCAACTGTTTCAC+TGG 0.411217 5_1:+42406554 None:intergenic
AATTGTGCCATATTGGAGTT+TGG 0.412583 5_1:+42408606 None:intergenic
GCTGGTTACCCTGGTGAACT+TGG 0.412679 5_1:-42408055 Msa0731500:CDS
ACTCCAAGGGTATTTACTCT+TGG 0.414446 5_1:+42408481 None:intergenic
ATCAAGCTTTCCATTACATA+AGG 0.416068 5_1:+42406292 None:intergenic
AACAGCTGGTGAAGATCCTT+TGG 0.418172 5_1:-42411707 Msa0731500:CDS
AATCCAACCAAACTCCAATA+TGG 0.420174 5_1:-42408613 Msa0731500:CDS
AGGTGGTTATTTGTTGGTTG+TGG 0.420306 5_1:-42406423 Msa0731500:CDS
AAACTCCAATATGGCACAAT+TGG 0.421759 5_1:-42408604 Msa0731500:CDS
GTGTTTGGTGACTATAACCC+AGG 0.425278 5_1:-42408010 Msa0731500:intron
ATAAGACTAGGCTTGTTTGA+TGG 0.425928 5_1:-42408637 Msa0731500:CDS
GTGCCCAAAACGTCATCCCT+TGG 0.426062 5_1:+42411776 None:intergenic
TAGCTCTTTGAGTGATGGTA+AGG 0.433582 5_1:+42412388 None:intergenic
ATCCAGAACGATAATGTGTT+TGG 0.439275 5_1:+42408353 None:intergenic
AAGCCAAAGAAAGGTAGAAA+TGG 0.439382 5_1:-42406581 Msa0731500:CDS
TCCTATGTAAGAGGACTTCA+AGG 0.442093 5_1:-42411664 Msa0731500:CDS
ACAAATACTGGAAGCATGGC+TGG 0.442763 5_1:-42406629 Msa0731500:CDS
CTCATTCTCATGTCTGTCAT+TGG 0.443342 5_1:+42406908 None:intergenic
TGCCCAAAACGTCATCCCTT+GGG 0.443887 5_1:+42411777 None:intergenic
TGGTGGAAAGGCTCTTGCTC+AGG 0.448059 5_1:-42408035 Msa0731500:CDS
TTTGAGAGTGTGACGGTGGA+AGG 0.451870 5_1:-42406533 Msa0731500:CDS
TGAAGAAGGTGGTTATTTGT+TGG 0.451987 5_1:-42406429 Msa0731500:CDS
ATGTCAATTTCTGTCACATT+GGG 0.454625 5_1:-42406656 Msa0731500:CDS
ATTATTTGGGCTGGTTACCC+TGG 0.458107 5_1:-42408064 Msa0731500:CDS
ATAAGTTCTTGCTGCTTACC+AGG 0.458334 5_1:+42408190 None:intergenic
CTTCCAATGATCCAAATCAT+AGG 0.458620 5_1:+42411570 None:intergenic
AATTAGTTTCCCACCTTCAA+AGG 0.461085 5_1:+42411636 None:intergenic
TATGCTGTTTCCTATGTAAG+AGG 0.462185 5_1:-42411673 Msa0731500:CDS
AGTTACTGACCTTACTGATT+CGG 0.462510 5_1:+42412139 None:intergenic
TAAGACTAGGCTTGTTTGAT+GGG 0.462964 5_1:-42408636 Msa0731500:CDS
ACATATTTAGGGACCCAAGA+TGG 0.464899 5_1:-42411744 Msa0731500:CDS
ACGGTGGAAGGAGGTGGAAA+GGG 0.465934 5_1:-42406521 Msa0731500:CDS
TTAGCAAAAGTAATATCAAC+AGG 0.467973 5_1:+42408109 None:intergenic
TTATTTGTTGGTTGTGGGAG+AGG 0.471909 5_1:-42406417 Msa0731500:CDS
GGTGTTGCTAATGCCGGTAA+AGG 0.474105 5_1:-42412249 Msa0731500:CDS
CATGTCAATTTCTGTCACAT+TGG 0.476854 5_1:-42406657 Msa0731500:CDS
CATATTTAGGGACCCAAGAT+GGG 0.480274 5_1:-42411743 Msa0731500:CDS
GTCTTTAGCTCTTTGAGTGA+TGG 0.484369 5_1:+42412383 None:intergenic
GTGTTGCTAATGCCGGTAAA+GGG 0.485722 5_1:-42412248 Msa0731500:CDS
AGCAAATGAGAGTGGTGTAA+AGG 0.488408 5_1:-42406456 Msa0731500:CDS
GCCTTTCCACCAAGTTCACC+AGG 0.489811 5_1:+42408046 None:intergenic
GGTGGTTATTTGTTGGTTGT+GGG 0.491601 5_1:-42406422 Msa0731500:CDS
CTATGATTTGGATCATTGGA+AGG 0.493202 5_1:-42411569 Msa0731500:CDS
AGGGTATTTACTCTTGGAAG+TGG 0.494590 5_1:+42408487 None:intergenic
CAAGGAGATTCCTTTGAAGG+TGG 0.495290 5_1:-42411646 Msa0731500:CDS
ACTCTGAAACAAGCTTGTAA+TGG 0.495354 5_1:+42406702 None:intergenic
TCATCCCACCATTGGTAACT+CGG 0.503578 5_1:+42412282 None:intergenic
GGTTACTTTGCAAGATTTGG+CGG 0.503836 5_1:-42410641 Msa0731500:CDS
GTATCGAATGAGTGGTTGAT+TGG 0.504227 5_1:+42406744 None:intergenic
CTGTTTGTGAAGCCAAAGAA+AGG 0.504938 5_1:-42406590 Msa0731500:CDS
ATGTGACTCTCCTTATGTAA+TGG 0.507201 5_1:-42406302 Msa0731500:three_prime_UTR
TTGGTGGTGTCACAGGAGTA+AGG 0.509360 5_1:+42412447 None:intergenic
AAGAATAATGACAAAATTGG+AGG 0.510297 5_1:-42408088 Msa0731500:CDS
ATGAGAGCTGATCCATCATC+AGG 0.511303 5_1:-42406890 Msa0731500:CDS
GTAGAAACGGTAGGTTCTAC+CGG 0.511605 5_1:+42406862 None:intergenic
TTACAAGCTTGTTTCAGAGT+TGG 0.513231 5_1:-42406699 Msa0731500:CDS
CGGTATACCGAGTCGAGGAA+TGG 0.513844 5_1:+42412302 None:intergenic
TGTCATTTAGATAAAACTCA+AGG 0.517055 5_1:+42406215 None:intergenic
GACGGTGGAAGGAGGTGGAA+AGG 0.517159 5_1:-42406522 Msa0731500:CDS
CTACCGGGATAGCCTGATGA+TGG 0.517596 5_1:+42406878 None:intergenic
AGAGATGATTTAGAGTTGCC+TGG 0.517802 5_1:-42408208 Msa0731500:CDS
CTTTGGCATCAAAATCAAAA+CGG 0.518275 5_1:+42411539 None:intergenic
CCCTGGTGAACTTGGTGGAA+AGG 0.520306 5_1:-42408047 Msa0731500:CDS
TGGTTGATTGGTTGATGTGA+AGG 0.520554 5_1:+42406756 None:intergenic
AGGTACATGAGTTGGTGAAT+CGG 0.520809 5_1:+42412470 None:intergenic
ACATCAGCTACAGCATCCTC+TGG 0.521946 5_1:+42409971 None:intergenic
TGCCAAAGCTTCTAAGAAGC+CGG 0.524198 5_1:-42408158 Msa0731500:CDS
CAGCTTCAAGAGCAACGTCT+AGG 0.524868 5_1:+42408554 None:intergenic
AAGTGGGTTGGTGGTGTCAC+AGG 0.526196 5_1:+42412440 None:intergenic
TTATCATGATTATATTATCA+GGG 0.528810 5_1:+42406266 None:intergenic
TGTGCTTACAACCGTGTCAA+TGG 0.530376 5_1:-42410559 Msa0731500:CDS
GCTAGAGGAGTGTACAATGC+TGG 0.534160 5_1:-42411805 Msa0731500:CDS
ATACCGAGTCGAGGAATGGC+AGG 0.534851 5_1:+42412306 None:intergenic
TCTTGGAAGTGGGAGAATTG+AGG 0.537861 5_1:+42408498 None:intergenic
AAGGTCTACGAATTCGGCTA+TGG 0.539382 5_1:-42406830 Msa0731500:CDS
CCTTTGGACCTGTGTAGAAA+CGG 0.540578 5_1:+42406849 None:intergenic
CAGCAGTAAGAATAACTTGA+GGG 0.540873 5_1:+42412187 None:intergenic
GATCCATCATCAGGCTATCC+CGG 0.542828 5_1:-42406881 Msa0731500:CDS
GGCTTCACAAACAGCAACAC+AGG 0.545539 5_1:+42406599 None:intergenic
AGAATCATATATGATAATCA+AGG 0.545803 5_1:-42410007 Msa0731500:CDS
GTGCCATATTGGAGTTTGGT+TGG 0.546323 5_1:+42408610 None:intergenic
ATTGGAGGGATTATTTGGGC+TGG 0.549271 5_1:-42408073 Msa0731500:CDS
CTTCCAAGAGTAAATACCCT+TGG 0.550798 5_1:-42408484 Msa0731500:CDS
CAATGTGACAGAAATTGACA+TGG 0.551118 5_1:+42406658 None:intergenic
AAGGAGATTCCTTTGAAGGT+GGG 0.551664 5_1:-42411645 Msa0731500:CDS
GGTTACCCTGGTGAACTTGG+TGG 0.554859 5_1:-42408052 Msa0731500:CDS
TAGATAAAACTCAAGGGAGG+TGG 0.557191 5_1:+42406222 None:intergenic
AATGGTGAATAGATTGTGTA+GGG 0.557476 5_1:+42408663 None:intergenic
GCAACGCTTCATCCCACCAT+TGG 0.558380 5_1:+42412274 None:intergenic
ATCCAGTGAAACAGTTGGTG+GGG 0.558413 5_1:-42406556 Msa0731500:CDS
TTTCATAGTTGCATAGTACA+AGG 0.561138 5_1:-42410601 Msa0731500:CDS
GGTAAAGGGATAAGATTGAA+TGG 0.561290 5_1:-42412234 Msa0731500:CDS
AATATTGGTACTAATCTACA+AGG 0.562148 5_1:+42408400 None:intergenic
GTTGAGATTGCAGAATGGAA+AGG 0.562893 5_1:+42412410 None:intergenic
AGGGACCCAAGATGGGGAAG+AGG 0.563005 5_1:-42411736 Msa0731500:CDS
AAATACATCCCCTCACAGCA+TGG 0.565004 5_1:-42412559 Msa0731500:exon
GAAGGTGGGAAACTAATTGG+AGG 0.571323 5_1:-42411631 Msa0731500:CDS
TCCTTGAAGTCCTCTTACAT+AGG 0.571602 5_1:+42411663 None:intergenic
GTCATTTAGATAAAACTCAA+GGG 0.573666 5_1:+42406216 None:intergenic
ACTTTGGTACCGAATCAGTA+AGG 0.574437 5_1:-42412148 Msa0731500:intron
GAGAGTGTGACGGTGGAAGG+AGG 0.575492 5_1:-42406530 Msa0731500:CDS
TAATGGTGAATAGATTGTGT+AGG 0.575658 5_1:+42408662 None:intergenic
AATCCAGTGAAACAGTTGGT+GGG 0.576108 5_1:-42406557 Msa0731500:CDS
AGTGTGACGGTGGAAGGAGG+TGG 0.578214 5_1:-42406527 Msa0731500:CDS
GGTGGGGTTTGAGAGTGTGA+CGG 0.579282 5_1:-42406540 Msa0731500:CDS
GGTGTAAAGGTGGTTGAAGA+AGG 0.579350 5_1:-42406443 Msa0731500:CDS
TACAATGCTGGACAAGCCCA+AGG 0.580349 5_1:-42411793 Msa0731500:CDS
CATTGTGTCACGGCTCACAT+TGG 0.582035 5_1:-42412361 Msa0731500:CDS
AATTACAAATACTGGAAGCA+TGG 0.582605 5_1:-42406633 Msa0731500:CDS
GGGGTTTGAGAGTGTGACGG+TGG 0.585244 5_1:-42406537 Msa0731500:CDS
AATACATCCCCTCACAGCAT+GGG 0.590123 5_1:-42412558 Msa0731500:exon
TATGATTTGGATCATTGGAA+GGG 0.590213 5_1:-42411568 Msa0731500:CDS
AATCGGCATGAACGAGTTGG+TGG 0.594003 5_1:+42412487 None:intergenic
GTAGCTGATGTACTTCAAGC+TGG 0.594292 5_1:-42409959 Msa0731500:intron
CATTAGGGCCTATAACTCCA+AGG 0.594911 5_1:+42408467 None:intergenic
TACTATGCAACTATGAAATG+GGG 0.595239 5_1:+42410606 None:intergenic
AAAAGTGACCCATGCTGTGA+GGG 0.599006 5_1:+42412550 None:intergenic
GCATACTTTGAATTTACCAA+AGG 0.603281 5_1:+42411691 None:intergenic
GGAAGAGGACAAGAAACAGC+TGG 0.605215 5_1:-42411721 Msa0731500:CDS
GGGTATTTACTCTTGGAAGT+GGG 0.605290 5_1:+42408488 None:intergenic
CCGTTTCTACACAGGTCCAA+AGG 0.609130 5_1:-42406849 Msa0731500:CDS
TTGCACGGTGTTGCTAATGC+CGG 0.609925 5_1:-42412255 Msa0731500:CDS
AGAATAATGACAAAATTGGA+GGG 0.611667 5_1:-42408087 Msa0731500:CDS
AGAACCTACCGTTTCTACAC+AGG 0.612051 5_1:-42406857 Msa0731500:CDS
GAGTAAGGAGGTACATGAGT+TGG 0.615620 5_1:+42412462 None:intergenic
AAATCCAGTGAAACAGTTGG+TGG 0.621488 5_1:-42406558 Msa0731500:CDS
GCTCCTGCCATTCCTCGACT+CGG 0.625159 5_1:-42412309 Msa0731500:CDS
TGGACCTGTGTAGAAACGGT+AGG 0.625209 5_1:+42406853 None:intergenic
GCAGCAGTAAGAATAACTTG+AGG 0.626019 5_1:+42412186 None:intergenic
AAATGAGAGTGGTGTAAAGG+TGG 0.632245 5_1:-42406453 Msa0731500:CDS
GCTCTTGAAGCTGCAAGAAG+CGG 0.632910 5_1:-42408544 Msa0731500:CDS
TGGAAATCCAGTGAAACAGT+TGG 0.633357 5_1:-42406561 Msa0731500:CDS
TGAATAGATTGTGTAGGGCA+CGG 0.634890 5_1:+42408668 None:intergenic
ATTGGATCAAAGTCAAGAGA+GGG 0.636383 5_1:-42408242 Msa0731500:CDS
AATTTGGAACTCCATTGACA+CGG 0.638503 5_1:+42410548 None:intergenic
ATAGTACAAGGACGGTCTAG+TGG 0.639813 5_1:-42410589 Msa0731500:CDS
TCGGTATACCGAGTTACCAA+TGG 0.640416 5_1:-42412290 Msa0731500:CDS
TAAAATCAGGTATATTACGT+CGG 0.641041 5_1:-42410044 Msa0731500:intron
GTAAGGTTGAGATTGCAGAA+TGG 0.642723 5_1:+42412405 None:intergenic
GTGAATCGGCATGAACGAGT+TGG 0.643992 5_1:+42412484 None:intergenic
ATAGTTGCATAGTACAAGGA+CGG 0.645766 5_1:-42410597 Msa0731500:CDS
TAGAAACGGTAGGTTCTACC+GGG 0.648311 5_1:+42406863 None:intergenic
CTTAGTAGAGCAAATGAGAG+TGG 0.648348 5_1:-42406464 Msa0731500:CDS
GTAAAGGTGGTTGAAGAAGG+TGG 0.656014 5_1:-42406440 Msa0731500:CDS
GATTGGATCAAAGTCAAGAG+AGG 0.658616 5_1:-42408243 Msa0731500:CDS
GTGATTGGAACTGAGGCTAG+AGG 0.659255 5_1:-42411820 Msa0731500:CDS
GTATACCGAGTTACCAATGG+TGG 0.659642 5_1:-42412287 Msa0731500:CDS
ATTAGGGCCTATAACTCCAA+GGG 0.662705 5_1:+42408468 None:intergenic
TTGGTACTAATCTACAAGGA+CGG 0.668059 5_1:+42408404 None:intergenic
TTACTTGACAAAGCATGCAA+AGG 0.671287 5_1:-42408731 Msa0731500:CDS
TGGTGGGATGAAGCGTTGCA+CGG 0.676038 5_1:-42412270 Msa0731500:CDS
TATGTAGGTGATTGGAACTG+AGG 0.677566 5_1:-42411827 Msa0731500:intron
GAGCTAAAGACATTGTGTCA+CGG 0.677585 5_1:-42412371 Msa0731500:CDS
ATATTTAGGGACCCAAGATG+GGG 0.678025 5_1:-42411742 Msa0731500:CDS
TTCACCATTAGAATAAGACT+AGG 0.688029 5_1:-42408649 Msa0731500:CDS
GAGGGAGACTACCAATGACA+TGG 0.689428 5_1:-42406955 Msa0731500:CDS
TATACCGAGTTACCAATGGT+GGG 0.695458 5_1:-42412286 Msa0731500:CDS
ATTTAGATAAAACTCAAGGG+AGG 0.705059 5_1:+42406219 None:intergenic
TCAGGGATGGATGTAGAGTG+TGG 0.708529 5_1:-42408757 Msa0731500:intron
TAACTCGGTATACCGAGTCG+AGG 0.711678 5_1:+42412297 None:intergenic
ACAATGCTGGACAAGCCCAA+GGG 0.711926 5_1:-42411792 Msa0731500:CDS
CCTTTCCACCAAGTTCACCA+GGG 0.713430 5_1:+42408047 None:intergenic
GAAAAGTGACCCATGCTGTG+AGG 0.718805 5_1:+42412549 None:intergenic
GTGGTGTCACAGGAGTAAGG+AGG 0.719507 5_1:+42412450 None:intergenic
AAAGTGACCCATGCTGTGAG+GGG 0.726647 5_1:+42412551 None:intergenic
ACTATGCAACTATGAAATGG+GGG 0.744455 5_1:+42410607 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTTTATTTTATAT+TGG - chr5_1:42411181-42411200 Msa0731500:intron 0.0%
!!! TTAATTTTTTATTTTATATT+GGG - chr5_1:42411182-42411201 Msa0731500:intron 0.0%
!! AATTTCTCTTATAAATAAAA+CGG + chr5_1:42407521-42407540 None:intergenic 10.0%
!! CAAAATTGAAATAATTATAA+GGG + chr5_1:42408394-42408413 None:intergenic 10.0%
!! ACAAAATTGAAATAATTATA+AGG + chr5_1:42408395-42408414 None:intergenic 10.0%
!!! AAAATGTAAATTTTATAAGA+AGG - chr5_1:42408518-42408537 Msa0731500:CDS 10.0%
!! ATATTGTTTAATTCTTATAA+GGG + chr5_1:42408547-42408566 None:intergenic 10.0%
!! TATATTGTTTAATTCTTATA+AGG + chr5_1:42408548-42408567 None:intergenic 10.0%
!!! GATTAATAAGAATAATTTTT+TGG - chr5_1:42408756-42408775 Msa0731500:CDS 10.0%
!!! AATATGAGATTTTATTTTTT+TGG - chr5_1:42408941-42408960 Msa0731500:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - chr5_1:42411415-42411434 Msa0731500:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG - chr5_1:42411416-42411435 Msa0731500:intron 10.0%
!!! ATAATCATGATAATATATTT+TGG - chr5_1:42412570-42412589 Msa0731500:five_prime_UTR 10.0%
!!! TAATCATGATAATATATTTT+GGG - chr5_1:42412571-42412590 Msa0731500:five_prime_UTR 10.0%
!!! TTTTTTTTTTGATATGTAAC+AGG + chr5_1:42406250-42406269 None:intergenic 15.0%
!!! AGTTTAAAGATTTTAGTTTT+TGG - chr5_1:42406783-42406802 Msa0731500:CDS 15.0%
!! ATCTTAATTAAAATGTATGT+AGG - chr5_1:42406984-42407003 Msa0731500:intron 15.0%
!! ATTTCTCTTATAAATAAAAC+GGG + chr5_1:42407520-42407539 None:intergenic 15.0%
!!! TATTAAATCAACTATTCTTT+TGG + chr5_1:42407833-42407852 None:intergenic 15.0%
!! GAAATTAAAAAATGACAAAT+AGG - chr5_1:42407855-42407874 Msa0731500:intron 15.0%
!! TATTGTTTAATTCTTATAAG+GGG + chr5_1:42408546-42408565 None:intergenic 15.0%
!! AACTAAAATACAAAATGATA+AGG + chr5_1:42409578-42409597 None:intergenic 15.0%
!!! AATAAGTGATTATGTTATTT+TGG - chr5_1:42410554-42410573 Msa0731500:CDS 15.0%
!! ACATAATTTGGTAAAAAAAA+TGG - chr5_1:42410879-42410898 Msa0731500:intron 15.0%
!! AAAATTGTGTCAATTAAATT+GGG + chr5_1:42411380-42411399 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - chr5_1:42411417-42411436 Msa0731500:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr5_1:42411480-42411499 Msa0731500:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr5_1:42411481-42411500 Msa0731500:intron 15.0%
!!! ATAAGCAATATTTTAAATTG+TGG + chr5_1:42411754-42411773 None:intergenic 15.0%
!! ATTAGTTGAAAAAGTTATTT+GGG + chr5_1:42411822-42411841 None:intergenic 15.0%
!! AATTAGTTGAAAAAGTTATT+TGG + chr5_1:42411823-42411842 None:intergenic 15.0%
!!! AAATAACTTTTTCAACTAAT+TGG - chr5_1:42411822-42411841 Msa0731500:CDS 15.0%
!! TTATCATGATTATATTATCA+GGG + chr5_1:42412563-42412582 None:intergenic 15.0%
!! ATTATCATGATTATATTATC+AGG + chr5_1:42412564-42412583 None:intergenic 15.0%
!!! AATCATGATAATATATTTTG+GGG - chr5_1:42412572-42412591 Msa0731500:five_prime_UTR 15.0%
!! CTTAAAATGAATTTCAAACA+TGG + chr5_1:42406721-42406740 None:intergenic 20.0%
!! ACCAAACATAAACATATTTA+GGG - chr5_1:42407071-42407090 Msa0731500:intron 20.0%
!! AAATGTAGAAATGATATTTG+TGG - chr5_1:42407461-42407480 Msa0731500:intron 20.0%
!! TTTCTCTTATAAATAAAACG+GGG + chr5_1:42407519-42407538 None:intergenic 20.0%
!!! AAATTGTAATTTGCACAATT+TGG + chr5_1:42408297-42408316 None:intergenic 20.0%
!! TGAAAAACATTGTTTCATAA+AGG + chr5_1:42408584-42408603 None:intergenic 20.0%
!!! AATTTTTTGGTGTTAAAATC+AGG - chr5_1:42408769-42408788 Msa0731500:intron 20.0%
!! AGAATCATATATGATAATCA+AGG - chr5_1:42408819-42408838 Msa0731500:intron 20.0%
!! GTTAATAGATGTATAAACAA+AGG + chr5_1:42408908-42408927 None:intergenic 20.0%
!! ATTATCTAACTCTATATCAA+TGG - chr5_1:42408979-42408998 Msa0731500:intron 20.0%
!!! CTAATTGAAAGAAAGTTTTT+AGG + chr5_1:42409166-42409185 None:intergenic 20.0%
!! AAAAATAAGTATGAGGTAAA+GGG + chr5_1:42409205-42409224 None:intergenic 20.0%
!!! GTTTTATATGTTTACCTTTT+AGG - chr5_1:42409324-42409343 Msa0731500:intron 20.0%
!! TAATATAATTAGACCTACAT+TGG - chr5_1:42409405-42409424 Msa0731500:intron 20.0%
!! TGAAAGAGATCTTAAAAAAA+AGG - chr5_1:42409448-42409467 Msa0731500:intron 20.0%
!! AACAACTTTAGATGATTTAT+TGG + chr5_1:42410385-42410404 None:intergenic 20.0%
!!! AAATCATCTAAAGTTGTTTT+AGG - chr5_1:42410387-42410406 Msa0731500:intron 20.0%
!! AGATTAGTACCAATATTAAA+AGG - chr5_1:42410432-42410451 Msa0731500:intron 20.0%
!!! GTGTAAAATCCTTTTAATAT+TGG + chr5_1:42410444-42410463 None:intergenic 20.0%
!!! TGATTATGTTATTTTGGTTA+TGG - chr5_1:42410560-42410579 Msa0731500:CDS 20.0%
!!! GATTATGTTATTTTGGTTAT+GGG - chr5_1:42410561-42410580 Msa0731500:CDS 20.0%
!! ACAGATAAAAACACATAATT+TGG - chr5_1:42410867-42410886 Msa0731500:intron 20.0%
!! TAATATTTAGTTAAGCAAAC+AGG - chr5_1:42411152-42411171 Msa0731500:intron 20.0%
!! AATATTTAGTTAAGCAAACA+GGG - chr5_1:42411153-42411172 Msa0731500:intron 20.0%
!! ATTTAGTTGTGTTTACTAAA+TGG + chr5_1:42411252-42411271 None:intergenic 20.0%
!! CAAAATTGTGTCAATTAAAT+TGG + chr5_1:42411381-42411400 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr5_1:42411440-42411459 Msa0731500:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr5_1:42411550-42411569 Msa0731500:CDS 20.0%
!!! AGAAAATAGTCTTCATTTTA+TGG + chr5_1:42411650-42411669 None:intergenic 20.0%
!!! GTATTTTGATGAAATCTTTT+GGG + chr5_1:42411899-42411918 None:intergenic 20.0%
!!! AATTTTCAATCAAGTAAAGA+TGG - chr5_1:42412479-42412498 Msa0731500:CDS 20.0%
! TTAAAATGTATGTAGGTGAT+TGG - chr5_1:42406991-42407010 Msa0731500:intron 25.0%
! CACCAAACATAAACATATTT+AGG - chr5_1:42407070-42407089 Msa0731500:intron 25.0%
! TCCCTAAATATGTTTATGTT+TGG + chr5_1:42407075-42407094 None:intergenic 25.0%
! AGAGAAAAGAAAACTTACTT+TGG + chr5_1:42407307-42407326 None:intergenic 25.0%
! GATTTATCTTACTTATTCAC+CGG + chr5_1:42407356-42407375 None:intergenic 25.0%
! TTCTCTTATAAATAAAACGG+GGG + chr5_1:42407518-42407537 None:intergenic 25.0%
! TCAACGAAAGTTAATGTATT+TGG - chr5_1:42407545-42407564 Msa0731500:intron 25.0%
!!! TTAACAAAAGTTGATGTATC+TGG + chr5_1:42407584-42407603 None:intergenic 25.0%
! CCTATTTATAAGAGAATGTT+TGG + chr5_1:42407607-42407626 None:intergenic 25.0%
! CCAAACATTCTCTTATAAAT+AGG - chr5_1:42407604-42407623 Msa0731500:intron 25.0%
! CATTCTCTTATAAATAGGAT+CGG - chr5_1:42407609-42407628 Msa0731500:intron 25.0%
! CAATTATCTTTAGTCATGTT+AGG - chr5_1:42407799-42407818 Msa0731500:intron 25.0%
! AAACTAAACAAACAAGAACT+TGG + chr5_1:42407935-42407954 None:intergenic 25.0%
! ACGGATTTGGATTATTTAAA+TGG + chr5_1:42408153-42408172 None:intergenic 25.0%
! AGTAACCTGAATTATTAGAA+CGG + chr5_1:42408172-42408191 None:intergenic 25.0%
! AGACAAAAATGGAATTTCAA+TGG - chr5_1:42408333-42408352 Msa0731500:CDS 25.0%
! GACAAAAATGGAATTTCAAT+GGG - chr5_1:42408334-42408353 Msa0731500:CDS 25.0%
! GCTCTTACAAATTACAAAAT+TGG - chr5_1:42408442-42408461 Msa0731500:CDS 25.0%
!! AATGTTTTTCACTCAATTGA+AGG - chr5_1:42408593-42408612 Msa0731500:CDS 25.0%
! AAATATGTAGCTTCAAAAAG+AGG + chr5_1:42408683-42408702 None:intergenic 25.0%
!! AAAAGTTCACTTTCACATTT+TGG + chr5_1:42408721-42408740 None:intergenic 25.0%
! TAAAATCAGGTATATTACGT+CGG - chr5_1:42408782-42408801 Msa0731500:intron 25.0%
!!! AGTATGCTATTTAATTTGCT+TGG + chr5_1:42409064-42409083 None:intergenic 25.0%
! GAAAAATAAGTATGAGGTAA+AGG + chr5_1:42409206-42409225 None:intergenic 25.0%
! ATCACGAGAATTAAAAAAGT+TGG - chr5_1:42409270-42409289 Msa0731500:intron 25.0%
! AACTTATTCTCTATCCTAAA+AGG + chr5_1:42409341-42409360 None:intergenic 25.0%
! AAGTATCTATTTACCAATGT+AGG + chr5_1:42409421-42409440 None:intergenic 25.0%
!!! CATTTTAGTTGTTTAAGTTC+TGG - chr5_1:42409532-42409551 Msa0731500:intron 25.0%
! TGGATCAATCTTAATTATCA+TGG + chr5_1:42409656-42409675 None:intergenic 25.0%
!! TGTCTTAATTTTACACAATG+TGG - chr5_1:42409705-42409724 Msa0731500:intron 25.0%
!!! ATTTGCCTTAGTTTTAGTTT+AGG - chr5_1:42409763-42409782 Msa0731500:intron 25.0%
! TTTGACCTAAACTAAAACTA+AGG + chr5_1:42409771-42409790 None:intergenic 25.0%
! AAAGTGATTATAGAACTTAG+AGG + chr5_1:42409802-42409821 None:intergenic 25.0%
! TAATAGTACTTGTGTATGTT+TGG + chr5_1:42410012-42410031 None:intergenic 25.0%
! CACAAGTACTATTATAATCA+AGG - chr5_1:42410018-42410037 Msa0731500:CDS 25.0%
!! TTGTGTAATCAAACTTTTCA+GGG - chr5_1:42410052-42410071 Msa0731500:intron 25.0%
! TAGATGATTTATTGGCATTA+GGG + chr5_1:42410377-42410396 None:intergenic 25.0%
! TTAGATGATTTATTGGCATT+AGG + chr5_1:42410378-42410397 None:intergenic 25.0%
! AATATTGGTACTAATCTACA+AGG + chr5_1:42410429-42410448 None:intergenic 25.0%
! CACAAAATTACCAAAATAAC+CGG + chr5_1:42410690-42410709 None:intergenic 25.0%
!!! GTTATTTTGGTAATTTTGTG+TGG - chr5_1:42410690-42410709 Msa0731500:intron 25.0%
! TTAGCAAAAGTAATATCAAC+AGG + chr5_1:42410720-42410739 None:intergenic 25.0%
! GCTAAGAATAATGACAAAAT+TGG - chr5_1:42410735-42410754 Msa0731500:intron 25.0%
! AAGAATAATGACAAAATTGG+AGG - chr5_1:42410738-42410757 Msa0731500:intron 25.0%
! AGAATAATGACAAAATTGGA+GGG - chr5_1:42410739-42410758 Msa0731500:intron 25.0%
!!! TATGTGTTTTTATCTGTCAA+TGG + chr5_1:42410864-42410883 None:intergenic 25.0%
!!! TATACATGTTTTAAGGATCT+TGG + chr5_1:42411092-42411111 None:intergenic 25.0%
!! CGAAGTTTATACATGTTTTA+AGG + chr5_1:42411099-42411118 None:intergenic 25.0%
! ATGTATAAACTTCGTAGATT+TGG - chr5_1:42411105-42411124 Msa0731500:intron 25.0%
!!! TTATTTTATATTGGGAGACA+AGG - chr5_1:42411190-42411209 Msa0731500:intron 25.0%
!! TATTTTATATTGGGAGACAA+GGG - chr5_1:42411191-42411210 Msa0731500:intron 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr5_1:42411439-42411458 Msa0731500:intron 25.0%
!! TTGAAATGTGTCAGTTATTT+TGG - chr5_1:42411527-42411546 Msa0731500:intron 25.0%
!!! TGAAATGTGTCAGTTATTTT+GGG - chr5_1:42411528-42411547 Msa0731500:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr5_1:42411549-42411568 Msa0731500:CDS 25.0%
!! GAAGACTATTTTCTATATCA+CGG - chr5_1:42411656-42411675 Msa0731500:CDS 25.0%
!! GGGCATGTATATAATAATTT+TGG + chr5_1:42411802-42411821 None:intergenic 25.0%
!!! GGTATTTTGATGAAATCTTT+TGG + chr5_1:42411900-42411919 None:intergenic 25.0%
! ATGGAAAGGATTTTGTAAGT+GGG + chr5_1:42406405-42406424 None:intergenic 30.0%
! AATGGAAAGGATTTTGTAAG+TGG + chr5_1:42406406-42406425 None:intergenic 30.0%
ATTCAATCTTATCCCTTTAC+CGG + chr5_1:42406593-42406612 None:intergenic 30.0%
GCATACTTTGAATTTACCAA+AGG + chr5_1:42407138-42407157 None:intergenic 30.0%
! ACATTTTACTGCCTATGATT+TGG - chr5_1:42407245-42407264 Msa0731500:intron 30.0%
! TATGATTTGGATCATTGGAA+GGG - chr5_1:42407258-42407277 Msa0731500:intron 30.0%
CTTTGGCATCAAAATCAAAA+CGG + chr5_1:42407290-42407309 None:intergenic 30.0%
TTTCTCTATGATATAGTCCT+TGG - chr5_1:42407320-42407339 Msa0731500:intron 30.0%
TTCTCTATGATATAGTCCTT+GGG - chr5_1:42407321-42407340 Msa0731500:intron 30.0%
ACGAAACTAAAAGACAAATC+AGG + chr5_1:42407659-42407678 None:intergenic 30.0%
TTCATCAACGACATAAAACA+AGG + chr5_1:42407739-42407758 None:intergenic 30.0%
! TTATGTCGTTGATGAATACT+TGG - chr5_1:42407743-42407762 Msa0731500:intron 30.0%
! CTGAATTATTAGAACGGATT+TGG + chr5_1:42408166-42408185 None:intergenic 30.0%
CAAATCCGTTCTAATAATTC+AGG - chr5_1:42408164-42408183 Msa0731500:CDS 30.0%
TACTATGCAACTATGAAATG+GGG + chr5_1:42408223-42408242 None:intergenic 30.0%
GTACTATGCAACTATGAAAT+GGG + chr5_1:42408224-42408243 None:intergenic 30.0%
TGTACTATGCAACTATGAAA+TGG + chr5_1:42408225-42408244 None:intergenic 30.0%
TTTCATAGTTGCATAGTACA+AGG - chr5_1:42408225-42408244 Msa0731500:CDS 30.0%
CTTGGTTTAATGTCTATCAT+TGG - chr5_1:42409128-42409147 Msa0731500:intron 30.0%
CTCTCAGAAAAATAAGTATG+AGG + chr5_1:42409212-42409231 None:intergenic 30.0%
!! CTCATACTTATTTTTCTGAG+AGG - chr5_1:42409210-42409229 Msa0731500:intron 30.0%
TGATTTAGTCGATTAGATCT+TGG + chr5_1:42409254-42409273 None:intergenic 30.0%
! TCCATGCACTCTAATTTTTA+TGG - chr5_1:42409672-42409691 Msa0731500:intron 30.0%
ACCATAAAAATTAGAGTGCA+TGG + chr5_1:42409676-42409695 None:intergenic 30.0%
! GTTGTGTAATCAAACTTTTC+AGG - chr5_1:42410051-42410070 Msa0731500:intron 30.0%
AATGGTGAATAGATTGTGTA+GGG + chr5_1:42410166-42410185 None:intergenic 30.0%
TAATGGTGAATAGATTGTGT+AGG + chr5_1:42410167-42410186 None:intergenic 30.0%
TTCACCATTAGAATAAGACT+AGG - chr5_1:42410177-42410196 Msa0731500:intron 30.0%
!!! GTTGTTTTAGGAAACTACTT+TGG - chr5_1:42410399-42410418 Msa0731500:intron 30.0%
!!! TGTTATTTTGGTTATGGGAT+TGG - chr5_1:42410566-42410585 Msa0731500:CDS 30.0%
!! ATTTTGGTAATTTTGTGTGG+TGG - chr5_1:42410693-42410712 Msa0731500:intron 30.0%
ACAAAATTGGAGGGATTATT+TGG - chr5_1:42410748-42410767 Msa0731500:intron 30.0%
CAAAATTGGAGGGATTATTT+GGG - chr5_1:42410749-42410768 Msa0731500:intron 30.0%
TAAACTGCTCAATCTTTGAT+CGG - chr5_1:42411016-42411035 Msa0731500:intron 30.0%
TGTTTACTAAATGGTTGCAT+GGG + chr5_1:42411243-42411262 None:intergenic 30.0%
! GGTAGTATTTTCTTTGAATC+TGG + chr5_1:42411352-42411371 None:intergenic 30.0%
TTGTGTCAATTAAATTGGGA+CGG + chr5_1:42411376-42411395 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr5_1:42411424-42411443 Msa0731500:intron 30.0%
! ATAGTGCTGTAAACTTTTTG+TGG - chr5_1:42411772-42411791 Msa0731500:CDS 30.0%
AGGAATAATTTGAGTAGCTT+AGG + chr5_1:42412022-42412041 None:intergenic 30.0%
TTTGACAGAAATGAAGTTGT+AGG + chr5_1:42412042-42412061 None:intergenic 30.0%
ATGTCAATTTCTGTCACATT+GGG - chr5_1:42412170-42412189 Msa0731500:CDS 30.0%
ACATTGGGAATTACAAATAC+TGG - chr5_1:42412185-42412204 Msa0731500:CDS 30.0%
AATTACAAATACTGGAAGCA+TGG - chr5_1:42412193-42412212 Msa0731500:CDS 30.0%
TTTCCATTTCTACCTTTCTT+TGG + chr5_1:42412251-42412270 None:intergenic 30.0%
ATCAAGCTTTCCATTACATA+AGG + chr5_1:42412537-42412556 None:intergenic 30.0%
! TATGTAATGGAAAGCTTGAT+TGG - chr5_1:42412537-42412556 Msa0731500:CDS 30.0%
AAAAATGCAAGCAATGGTGA+TGG + chr5_1:42406302-42406321 None:intergenic 35.0%
GAAGAGAAAAATGCAAGCAA+TGG + chr5_1:42406308-42406327 None:intergenic 35.0%
! AAAGGATTTTGTAAGTGGGT+TGG + chr5_1:42406401-42406420 None:intergenic 35.0%
GGTAAAGGGATAAGATTGAA+TGG - chr5_1:42406592-42406611 Msa0731500:CDS 35.0%
CAGCAGTAAGAATAACTTGA+GGG + chr5_1:42406642-42406661 None:intergenic 35.0%
! CTTCTTTTGATCCCAAACTT+TGG - chr5_1:42406662-42406681 Msa0731500:CDS 35.0%
! AGTTACTGACCTTACTGATT+CGG + chr5_1:42406690-42406709 None:intergenic 35.0%
! CATTAGAAGAGTATACTCGA+AGG + chr5_1:42406915-42406934 None:intergenic 35.0%
CTTCGAGTATACTCTTCTAA+TGG - chr5_1:42406913-42406932 Msa0731500:CDS 35.0%
GTATACTCTTCTAATGGTCT+CGG - chr5_1:42406919-42406938 Msa0731500:CDS 35.0%
TATACTCTTCTAATGGTCTC+GGG - chr5_1:42406920-42406939 Msa0731500:CDS 35.0%
!! TATGCTGTTTCCTATGTAAG+AGG - chr5_1:42407153-42407172 Msa0731500:intron 35.0%
! AATTAGTTTCCCACCTTCAA+AGG + chr5_1:42407193-42407212 None:intergenic 35.0%
TTTGAAGGTGGGAAACTAAT+TGG - chr5_1:42407192-42407211 Msa0731500:intron 35.0%
CTTCCAATGATCCAAATCAT+AGG + chr5_1:42407259-42407278 None:intergenic 35.0%
! CTATGATTTGGATCATTGGA+AGG - chr5_1:42407257-42407276 Msa0731500:intron 35.0%
TCTCTTATAAATAGGATCGG+AGG - chr5_1:42407612-42407631 Msa0731500:intron 35.0%
CTCTTATAAATAGGATCGGA+GGG - chr5_1:42407613-42407632 Msa0731500:intron 35.0%
TTGATCAACGGCATAAAACA+AGG + chr5_1:42408008-42408027 None:intergenic 35.0%
!! AAGTTCCAAGCATTGATCAA+CGG + chr5_1:42408020-42408039 None:intergenic 35.0%
AACAATGTCTTACATAGCTC+TGG - chr5_1:42408041-42408060 Msa0731500:CDS 35.0%
! TCAGGTTACTTTGCAAGATT+TGG - chr5_1:42408182-42408201 Msa0731500:CDS 35.0%
ACTATGCAACTATGAAATGG+GGG + chr5_1:42408222-42408241 None:intergenic 35.0%
ATAGTTGCATAGTACAAGGA+CGG - chr5_1:42408229-42408248 Msa0731500:CDS 35.0%
! AATTTGGAACTCCATTGACA+CGG + chr5_1:42408281-42408300 None:intergenic 35.0%
!! CCATTTTTGTCTAGCAGTTT+TGG + chr5_1:42408325-42408344 None:intergenic 35.0%
CCAAAACTGCTAGACAAAAA+TGG - chr5_1:42408322-42408341 Msa0731500:CDS 35.0%
CTAAGTTTCACCAACTAAGT+AGG + chr5_1:42408631-42408650 None:intergenic 35.0%
!! TGAGAAAAGTACCTTCCATT+GGG + chr5_1:42409006-42409025 None:intergenic 35.0%
!! TATTTAATTTGCTTGGCGTG+GGG + chr5_1:42409057-42409076 None:intergenic 35.0%
!! CTATTTAATTTGCTTGGCGT+GGG + chr5_1:42409058-42409077 None:intergenic 35.0%
ATACTCCAAAAATTCACAGC+TGG - chr5_1:42409079-42409098 Msa0731500:intron 35.0%
! TAAGTCCAGCTGTGAATTTT+TGG + chr5_1:42409087-42409106 None:intergenic 35.0%
TTCAACCAACGTATCTATTC+CGG - chr5_1:42409366-42409385 Msa0731500:intron 35.0%
! TTACATCATTTTCTGCAACC+CGG + chr5_1:42409388-42409407 None:intergenic 35.0%
CTCACTATAAGACACAAATG+AGG + chr5_1:42409617-42409636 None:intergenic 35.0%
CTCATTTGTGTCTTATAGTG+AGG - chr5_1:42409615-42409634 Msa0731500:intron 35.0%
!! GTAATCAAACTTTTCAGGGA+TGG - chr5_1:42410056-42410075 Msa0731500:intron 35.0%
TTACTTGACAAAGCATGCAA+AGG - chr5_1:42410095-42410114 Msa0731500:intron 35.0%
!! CAAGCCTAGTCTTATTCTAA+TGG + chr5_1:42410184-42410203 None:intergenic 35.0%
! ATAAGACTAGGCTTGTTTGA+TGG - chr5_1:42410189-42410208 Msa0731500:intron 35.0%
! TAAGACTAGGCTTGTTTGAT+GGG - chr5_1:42410190-42410209 Msa0731500:intron 35.0%
AAACTCCAATATGGCACAAT+TGG - chr5_1:42410222-42410241 Msa0731500:intron 35.0%
GTAAATACCCTTGGAGTTAT+AGG - chr5_1:42410351-42410370 Msa0731500:intron 35.0%
TTGGTACTAATCTACAAGGA+CGG + chr5_1:42410425-42410444 None:intergenic 35.0%
ATCCAGAACGATAATGTGTT+TGG + chr5_1:42410476-42410495 None:intergenic 35.0%
! TTTTAGCAACTTCAACTGCT+CGG + chr5_1:42410536-42410555 None:intergenic 35.0%
ATTGGATCAAAGTCAAGAGA+GGG - chr5_1:42410584-42410603 Msa0731500:CDS 35.0%
!! TTCTAAGAAGCCGGTTATTT+TGG - chr5_1:42410677-42410696 Msa0731500:intron 35.0%
GCATAGAAGAAAACTAACCT+GGG + chr5_1:42410836-42410855 None:intergenic 35.0%
AGCATAGAAGAAAACTAACC+TGG + chr5_1:42410837-42410856 None:intergenic 35.0%
AGAGTCTGAAAAATCAGCTT+CGG - chr5_1:42411216-42411235 Msa0731500:intron 35.0%
GTGTTTACTAAATGGTTGCA+TGG + chr5_1:42411244-42411263 None:intergenic 35.0%
CACAACTAAATCTCAGTTAC+TGG - chr5_1:42411261-42411280 Msa0731500:intron 35.0%
TAAATCTCAGTTACTGGATG+CGG - chr5_1:42411267-42411286 Msa0731500:intron 35.0%
AATGAACCTTGAACCAACTA+CGG - chr5_1:42411290-42411309 Msa0731500:intron 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr5_1:42411563-42411582 Msa0731500:CDS 35.0%
TTTGTTAATGACTGCAATGC+AGG - chr5_1:42411849-42411868 Msa0731500:intron 35.0%
!! ACTCTGAAACAAGCTTGTAA+TGG + chr5_1:42412127-42412146 None:intergenic 35.0%
! TTACAAGCTTGTTTCAGAGT+TGG - chr5_1:42412127-42412146 Msa0731500:intron 35.0%
! TACAAGCTTGTTTCAGAGTT+GGG - chr5_1:42412128-42412147 Msa0731500:intron 35.0%
CAATGTGACAGAAATTGACA+TGG + chr5_1:42412171-42412190 None:intergenic 35.0%
CATGTCAATTTCTGTCACAT+TGG - chr5_1:42412169-42412188 Msa0731500:CDS 35.0%
AAGCCAAAGAAAGGTAGAAA+TGG - chr5_1:42412245-42412264 Msa0731500:CDS 35.0%
TGAAGAAGGTGGTTATTTGT+TGG - chr5_1:42412397-42412416 Msa0731500:CDS 35.0%
ATGTGACTCTCCTTATGTAA+TGG - chr5_1:42412524-42412543 Msa0731500:CDS 35.0%
!! AGGTACATGAGTTGGTGAAT+CGG + chr5_1:42406359-42406378 None:intergenic 40.0%
GTTGAGATTGCAGAATGGAA+AGG + chr5_1:42406419-42406438 None:intergenic 40.0%
GTAAGGTTGAGATTGCAGAA+TGG + chr5_1:42406424-42406443 None:intergenic 40.0%
TAGCTCTTTGAGTGATGGTA+AGG + chr5_1:42406441-42406460 None:intergenic 40.0%
!! GTCTTTAGCTCTTTGAGTGA+TGG + chr5_1:42406446-42406465 None:intergenic 40.0%
GAGCTAAAGACATTGTGTCA+CGG - chr5_1:42406455-42406474 Msa0731500:CDS 40.0%
TATACCGAGTTACCAATGGT+GGG - chr5_1:42406540-42406559 Msa0731500:CDS 40.0%
GCAGCAGTAAGAATAACTTG+AGG + chr5_1:42406643-42406662 None:intergenic 40.0%
!! CTGATTCGGTACCAAAGTTT+GGG + chr5_1:42406676-42406695 None:intergenic 40.0%
!! ACTGATTCGGTACCAAAGTT+TGG + chr5_1:42406677-42406696 None:intergenic 40.0%
! ACTTTGGTACCGAATCAGTA+AGG - chr5_1:42406678-42406697 Msa0731500:CDS 40.0%
TATGTAGGTGATTGGAACTG+AGG - chr5_1:42406999-42407018 Msa0731500:intron 40.0%
ACATATTTAGGGACCCAAGA+TGG - chr5_1:42407082-42407101 Msa0731500:intron 40.0%
CATATTTAGGGACCCAAGAT+GGG - chr5_1:42407083-42407102 Msa0731500:intron 40.0%
ATATTTAGGGACCCAAGATG+GGG - chr5_1:42407084-42407103 Msa0731500:intron 40.0%
TCCTATGTAAGAGGACTTCA+AGG - chr5_1:42407162-42407181 Msa0731500:intron 40.0%
TCCTTGAAGTCCTCTTACAT+AGG + chr5_1:42407166-42407185 None:intergenic 40.0%
CTTCAAGGAGATTCCTTTGA+AGG - chr5_1:42407177-42407196 Msa0731500:intron 40.0%
! AAGGAGATTCCTTTGAAGGT+GGG - chr5_1:42407181-42407200 Msa0731500:intron 40.0%
! CTGCCTATGATTTGGATCAT+TGG - chr5_1:42407253-42407272 Msa0731500:intron 40.0%
TTTGGATCATTGGAAGGGTT+TGG - chr5_1:42407263-42407282 Msa0731500:intron 40.0%
GGGAGTGAGCACAAATAAAA+TGG + chr5_1:42407498-42407517 None:intergenic 40.0%
CTAAAAGACAAATCAGGCGA+CGG + chr5_1:42407653-42407672 None:intergenic 40.0%
TTATGCCGTTGATCAATGCT+TGG - chr5_1:42408012-42408031 Msa0731500:CDS 40.0%
!!! GTCTTACATAGCTCTGGTTT+TGG - chr5_1:42408047-42408066 Msa0731500:CDS 40.0%
! TTTGGATCATGAGGTGGTTT+TGG - chr5_1:42408065-42408084 Msa0731500:CDS 40.0%
!!! GAGGTGGTTTTGGATACATT+TGG - chr5_1:42408075-42408094 Msa0731500:CDS 40.0%
! GGTTACTTTGCAAGATTTGG+CGG - chr5_1:42408185-42408204 Msa0731500:CDS 40.0%
! TCAATTGAAGGTGTGAGCAA+TGG - chr5_1:42408605-42408624 Msa0731500:CDS 40.0%
AGGTTATGCAAAAACACCAG+AGG - chr5_1:42408839-42408858 Msa0731500:intron 40.0%
CTCTATATCAATGGTCCCAA+TGG - chr5_1:42408988-42409007 Msa0731500:intron 40.0%
ATATCAATGGTCCCAATGGA+AGG - chr5_1:42408992-42409011 Msa0731500:intron 40.0%
!! GTGAGAAAAGTACCTTCCAT+TGG + chr5_1:42409007-42409026 None:intergenic 40.0%
!! GCTATTTAATTTGCTTGGCG+TGG + chr5_1:42409059-42409078 None:intergenic 40.0%
TGTGTGTCAAAGACTGTACT+TGG - chr5_1:42409110-42409129 Msa0731500:intron 40.0%
GTCGATTAGATCTTGGTATG+AGG + chr5_1:42409247-42409266 None:intergenic 40.0%
TCAACCAACGTATCTATTCC+GGG - chr5_1:42409367-42409386 Msa0731500:intron 40.0%
TTTAGTTATGCCTTTGCCAG+TGG - chr5_1:42409591-42409610 Msa0731500:intron 40.0%
! GCACGGTCAATTTGAGATAT+TGG + chr5_1:42410144-42410163 None:intergenic 40.0%
TGAATAGATTGTGTAGGGCA+CGG + chr5_1:42410161-42410180 None:intergenic 40.0%
TTGGACCAATTGTGCCATAT+TGG + chr5_1:42410230-42410249 None:intergenic 40.0%
!! TCTTTAGAGCAGACTTGGTT+TGG + chr5_1:42410249-42410268 None:intergenic 40.0%
!!! GGTTTTCTTTAGAGCAGACT+TGG + chr5_1:42410254-42410273 None:intergenic 40.0%
GGGTATTTACTCTTGGAAGT+GGG + chr5_1:42410341-42410360 None:intergenic 40.0%
! AGGGTATTTACTCTTGGAAG+TGG + chr5_1:42410342-42410361 None:intergenic 40.0%
CTTCCAAGAGTAAATACCCT+TGG - chr5_1:42410342-42410361 Msa0731500:intron 40.0%
!! ACTCCAAGGGTATTTACTCT+TGG + chr5_1:42410348-42410367 None:intergenic 40.0%
ATTAGGGCCTATAACTCCAA+GGG + chr5_1:42410361-42410380 None:intergenic 40.0%
AGCCAAACACATTATCGTTC+TGG - chr5_1:42410471-42410490 Msa0731500:intron 40.0%
! TATCGTTCTGGATGTCTTGA+TGG - chr5_1:42410483-42410502 Msa0731500:intron 40.0%
GATTGGATCAAAGTCAAGAG+AGG - chr5_1:42410583-42410602 Msa0731500:CDS 40.0%
! AGAGATGATTTAGAGTTGCC+TGG - chr5_1:42410618-42410637 Msa0731500:CDS 40.0%
! ATAAGTTCTTGCTGCTTACC+AGG + chr5_1:42410639-42410658 None:intergenic 40.0%
GTCAGGTAACATCTGAAGAT+TGG - chr5_1:42410933-42410952 Msa0731500:intron 40.0%
AACTGCATGCAATGTAGTTG+TGG - chr5_1:42411056-42411075 Msa0731500:intron 40.0%
! AAATCTCCGTAGTTGGTTCA+AGG + chr5_1:42411299-42411318 None:intergenic 40.0%
TTGAACCAACTACGGAGATT+TGG - chr5_1:42411298-42411317 Msa0731500:intron 40.0%
ATTTGGCTGAACTGACTAGA+TGG - chr5_1:42411315-42411334 Msa0731500:intron 40.0%
TGTCAATTAAATTGGGACGG+AGG + chr5_1:42411373-42411392 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr5_1:42411564-42411583 Msa0731500:CDS 40.0%
GGGAGTAGTCTTTATGTTCA+TGG - chr5_1:42411592-42411611 Msa0731500:CDS 40.0%
TTAATGACTGCAATGCAGGA+GGG - chr5_1:42411853-42411872 Msa0731500:intron 40.0%
!! TCTTTTGGGTACCATGTCAT+TGG + chr5_1:42411885-42411904 None:intergenic 40.0%
CTCATTCTCATGTCTGTCAT+TGG + chr5_1:42411921-42411940 None:intergenic 40.0%
! TGGTTGATTGGTTGATGTGA+AGG + chr5_1:42412073-42412092 None:intergenic 40.0%
GTATCGAATGAGTGGTTGAT+TGG + chr5_1:42412085-42412104 None:intergenic 40.0%
!!! GTTTTCGAGTATCGAATGAG+TGG + chr5_1:42412093-42412112 None:intergenic 40.0%
CTGTTTGTGAAGCCAAAGAA+AGG - chr5_1:42412236-42412255 Msa0731500:CDS 40.0%
TGGAAATCCAGTGAAACAGT+TGG - chr5_1:42412265-42412284 Msa0731500:CDS 40.0%
AAATCCAGTGAAACAGTTGG+TGG - chr5_1:42412268-42412287 Msa0731500:CDS 40.0%
AATCCAGTGAAACAGTTGGT+GGG - chr5_1:42412269-42412288 Msa0731500:CDS 40.0%
CTTAGTAGAGCAAATGAGAG+TGG - chr5_1:42412362-42412381 Msa0731500:CDS 40.0%
AGCAAATGAGAGTGGTGTAA+AGG - chr5_1:42412370-42412389 Msa0731500:CDS 40.0%
AAATGAGAGTGGTGTAAAGG+TGG - chr5_1:42412373-42412392 Msa0731500:CDS 40.0%
! AGGTGGTTATTTGTTGGTTG+TGG - chr5_1:42412403-42412422 Msa0731500:CDS 40.0%
! GGTGGTTATTTGTTGGTTGT+GGG - chr5_1:42412404-42412423 Msa0731500:CDS 40.0%
! TTATTTGTTGGTTGTGGGAG+AGG - chr5_1:42412409-42412428 Msa0731500:CDS 40.0%
TAGATAAAACTCAAGGGAGG+TGG + chr5_1:42412607-42412626 None:intergenic 40.0%
AAATACATCCCCTCACAGCA+TGG - chr5_1:42406267-42406286 Msa0731500:three_prime_UTR 45.0%
AATACATCCCCTCACAGCAT+GGG - chr5_1:42406268-42406287 Msa0731500:three_prime_UTR 45.0%
AAAAGTGACCCATGCTGTGA+GGG + chr5_1:42406279-42406298 None:intergenic 45.0%
! GAGTAAGGAGGTACATGAGT+TGG + chr5_1:42406367-42406386 None:intergenic 45.0%
!!! GGATTTTGTAAGTGGGTTGG+TGG + chr5_1:42406398-42406417 None:intergenic 45.0%
TCGGTATACCGAGTTACCAA+TGG - chr5_1:42406536-42406555 Msa0731500:CDS 45.0%
GTATACCGAGTTACCAATGG+TGG - chr5_1:42406539-42406558 Msa0731500:CDS 45.0%
! TCATCCCACCATTGGTAACT+CGG + chr5_1:42406547-42406566 None:intergenic 45.0%
! GTGTTGCTAATGCCGGTAAA+GGG - chr5_1:42406578-42406597 Msa0731500:CDS 45.0%
AGATTGAATGGCAGTGTTGC+AGG - chr5_1:42406604-42406623 Msa0731500:CDS 45.0%
AACAGCTGGTGAAGATCCTT+TGG - chr5_1:42407119-42407138 Msa0731500:intron 45.0%
! CAAGGAGATTCCTTTGAAGG+TGG - chr5_1:42407180-42407199 Msa0731500:intron 45.0%
GAAGGTGGGAAACTAATTGG+AGG - chr5_1:42407195-42407214 Msa0731500:intron 45.0%
AGTCCTTGGGTGATTAACTC+CGG - chr5_1:42407334-42407353 Msa0731500:intron 45.0%
!!! AGCTCTGGTTTTGGATCATG+AGG - chr5_1:42408056-42408075 Msa0731500:CDS 45.0%
!!! TCTGGTTTTGGATCATGAGG+TGG - chr5_1:42408059-42408078 Msa0731500:CDS 45.0%
ATAGTACAAGGACGGTCTAG+TGG - chr5_1:42408237-42408256 Msa0731500:CDS 45.0%
TGTGCTTACAACCGTGTCAA+TGG - chr5_1:42408267-42408286 Msa0731500:CDS 45.0%
TGAGCAATGGCCTACTTAGT+TGG - chr5_1:42408618-42408637 Msa0731500:CDS 45.0%
GTAGCTGATGTACTTCAAGC+TGG - chr5_1:42408867-42408886 Msa0731500:intron 45.0%
TTGGCGTGGGGAATATATGT+GGG + chr5_1:42409045-42409064 None:intergenic 45.0%
TAAGACACAAATGAGGCCAC+TGG + chr5_1:42409610-42409629 None:intergenic 45.0%
TCTTGGAAGTGGGAGAATTG+AGG + chr5_1:42410331-42410350 None:intergenic 45.0%
CATTAGGGCCTATAACTCCA+AGG + chr5_1:42410362-42410381 None:intergenic 45.0%
! TGCCAAAGCTTCTAAGAAGC+CGG - chr5_1:42410668-42410687 Msa0731500:intron 45.0%
! AACCGGCTTCTTAGAAGCTT+TGG + chr5_1:42410673-42410692 None:intergenic 45.0%
ATTGGAGGGATTATTTGGGC+TGG - chr5_1:42410753-42410772 Msa0731500:intron 45.0%
!! ATTATTTGGGCTGGTTACCC+TGG - chr5_1:42410762-42410781 Msa0731500:intron 45.0%
! GTGTTTGGTGACTATAACCC+AGG - chr5_1:42410816-42410835 Msa0731500:intron 45.0%
CTGCTCAATCTTTGATCGGA+TGG - chr5_1:42411020-42411039 Msa0731500:intron 45.0%
TTCAGCCAAATCTCCGTAGT+TGG + chr5_1:42411306-42411325 None:intergenic 45.0%
AACTGACTAGATGGTAGCAG+AGG - chr5_1:42411324-42411343 Msa0731500:intron 45.0%
ACTGACTAGATGGTAGCAGA+GGG - chr5_1:42411325-42411344 Msa0731500:intron 45.0%
GTTAATGACTGCAATGCAGG+AGG - chr5_1:42411852-42411871 Msa0731500:intron 45.0%
ATGAGAGCTGATCCATCATC+AGG - chr5_1:42411936-42411955 Msa0731500:intron 45.0%
TAGAAACGGTAGGTTCTACC+GGG + chr5_1:42411966-42411985 None:intergenic 45.0%
GTAGAAACGGTAGGTTCTAC+CGG + chr5_1:42411967-42411986 None:intergenic 45.0%
AGAACCTACCGTTTCTACAC+AGG - chr5_1:42411969-42411988 Msa0731500:intron 45.0%
CCTTTGGACCTGTGTAGAAA+CGG + chr5_1:42411980-42411999 None:intergenic 45.0%
GGTCCAAAGGTCTACGAATT+CGG - chr5_1:42411990-42412009 Msa0731500:intron 45.0%
TAGCCGAATTCGTAGACCTT+TGG + chr5_1:42411996-42412015 None:intergenic 45.0%
AAGGTCTACGAATTCGGCTA+TGG - chr5_1:42411996-42412015 Msa0731500:intron 45.0%
! ACAAATACTGGAAGCATGGC+TGG - chr5_1:42412197-42412216 Msa0731500:CDS 45.0%
! ATCCAGTGAAACAGTTGGTG+GGG - chr5_1:42412270-42412289 Msa0731500:CDS 45.0%
GGTGTAAAGGTGGTTGAAGA+AGG - chr5_1:42412383-42412402 Msa0731500:CDS 45.0%
GTAAAGGTGGTTGAAGAAGG+TGG - chr5_1:42412386-42412405 Msa0731500:CDS 45.0%
AAAGTGACCCATGCTGTGAG+GGG + chr5_1:42406278-42406297 None:intergenic 50.0%
GAAAAGTGACCCATGCTGTG+AGG + chr5_1:42406280-42406299 None:intergenic 50.0%
! AATCGGCATGAACGAGTTGG+TGG + chr5_1:42406342-42406361 None:intergenic 50.0%
GTGAATCGGCATGAACGAGT+TGG + chr5_1:42406345-42406364 None:intergenic 50.0%
!! TTGGTGGTGTCACAGGAGTA+AGG + chr5_1:42406382-42406401 None:intergenic 50.0%
CATTGTGTCACGGCTCACAT+TGG - chr5_1:42406465-42406484 Msa0731500:CDS 50.0%
TAACTCGGTATACCGAGTCG+AGG + chr5_1:42406532-42406551 None:intergenic 50.0%
!! TTGCACGGTGTTGCTAATGC+CGG - chr5_1:42406571-42406590 Msa0731500:CDS 50.0%
!! GGTGTTGCTAATGCCGGTAA+AGG - chr5_1:42406577-42406596 Msa0731500:CDS 50.0%
GTGATTGGAACTGAGGCTAG+AGG - chr5_1:42407006-42407025 Msa0731500:intron 50.0%
! GCTAGAGGAGTGTACAATGC+TGG - chr5_1:42407021-42407040 Msa0731500:intron 50.0%
TACAATGCTGGACAAGCCCA+AGG - chr5_1:42407033-42407052 Msa0731500:intron 50.0%
ACAATGCTGGACAAGCCCAA+GGG - chr5_1:42407034-42407053 Msa0731500:intron 50.0%
! AAGCCCAAGGGATGACGTTT+TGG - chr5_1:42407046-42407065 Msa0731500:intron 50.0%
! AGCCCAAGGGATGACGTTTT+GGG - chr5_1:42407047-42407066 Msa0731500:intron 50.0%
TGCCCAAAACGTCATCCCTT+GGG + chr5_1:42407052-42407071 None:intergenic 50.0%
CTTGTCCTCTTCCCCATCTT+GGG + chr5_1:42407098-42407117 None:intergenic 50.0%
TCTTGTCCTCTTCCCCATCT+TGG + chr5_1:42407099-42407118 None:intergenic 50.0%
GGAAGAGGACAAGAAACAGC+TGG - chr5_1:42407105-42407124 Msa0731500:intron 50.0%
TCACCGGAGTTAATCACCCA+AGG + chr5_1:42407340-42407359 None:intergenic 50.0%
ACATCAGCTACAGCATCCTC+TGG + chr5_1:42408858-42408877 None:intergenic 50.0%
TGGCGTGGGGAATATATGTG+GGG + chr5_1:42409044-42409063 None:intergenic 50.0%
CTTGGCGTGGGGAATATATG+TGG + chr5_1:42409046-42409065 None:intergenic 50.0%
GCAACCCGGAATAGATACGT+TGG + chr5_1:42409374-42409393 None:intergenic 50.0%
ACAAATGAGGCCACTGGCAA+AGG + chr5_1:42409604-42409623 None:intergenic 50.0%
TCAGGGATGGATGTAGAGTG+TGG - chr5_1:42410069-42410088 Msa0731500:intron 50.0%
CAGCTTCAAGAGCAACGTCT+AGG + chr5_1:42410275-42410294 None:intergenic 50.0%
GCTCTTGAAGCTGCAAGAAG+CGG - chr5_1:42410282-42410301 Msa0731500:intron 50.0%
CCTTTCCACCAAGTTCACCA+GGG + chr5_1:42410782-42410801 None:intergenic 50.0%
! GCTCTTGCTCAGGTTGTGTT+TGG - chr5_1:42410801-42410820 Msa0731500:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr5_1:42411568-42411587 Msa0731500:CDS 50.0%
GAGGGAGACTACCAATGACA+TGG - chr5_1:42411871-42411890 Msa0731500:intron 50.0%
GATCCATCATCAGGCTATCC+CGG - chr5_1:42411945-42411964 Msa0731500:intron 50.0%
TGGACCTGTGTAGAAACGGT+AGG + chr5_1:42411976-42411995 None:intergenic 50.0%
CCGTTTCTACACAGGTCCAA+AGG - chr5_1:42411977-42411996 Msa0731500:intron 50.0%
GGCTTCACAAACAGCAACAC+AGG + chr5_1:42412230-42412249 None:intergenic 50.0%
AACCCCACCAACTGTTTCAC+TGG + chr5_1:42412275-42412294 None:intergenic 50.0%
! TTTGAGAGTGTGACGGTGGA+AGG - chr5_1:42412293-42412312 Msa0731500:CDS 50.0%
!! GTGGTGTCACAGGAGTAAGG+AGG + chr5_1:42406379-42406398 None:intergenic 55.0%
!! AAGTGGGTTGGTGGTGTCAC+AGG + chr5_1:42406389-42406408 None:intergenic 55.0%
ATACCGAGTCGAGGAATGGC+AGG + chr5_1:42406523-42406542 None:intergenic 55.0%
CGGTATACCGAGTCGAGGAA+TGG + chr5_1:42406527-42406546 None:intergenic 55.0%
GCAACGCTTCATCCCACCAT+TGG + chr5_1:42406555-42406574 None:intergenic 55.0%
!! TGGTGGGATGAAGCGTTGCA+CGG - chr5_1:42406556-42406575 Msa0731500:CDS 55.0%
GTGCCCAAAACGTCATCCCT+TGG + chr5_1:42407053-42407072 None:intergenic 55.0%
GCTGGTTACCCTGGTGAACT+TGG - chr5_1:42410771-42410790 Msa0731500:intron 55.0%
GGTTACCCTGGTGAACTTGG+TGG - chr5_1:42410774-42410793 Msa0731500:intron 55.0%
! CCCTGGTGAACTTGGTGGAA+AGG - chr5_1:42410779-42410798 Msa0731500:intron 55.0%
GCCTTTCCACCAAGTTCACC+AGG + chr5_1:42410783-42410802 None:intergenic 55.0%
TGGTGGAAAGGCTCTTGCTC+AGG - chr5_1:42410791-42410810 Msa0731500:intron 55.0%
! CAGTGTTACTGCACGCAGTC+AGG - chr5_1:42410916-42410935 Msa0731500:intron 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr5_1:42411572-42411591 Msa0731500:CDS 55.0%
AAAGACTACTCCCTCCGTCC+CGG + chr5_1:42411585-42411604 None:intergenic 55.0%
CTACCGGGATAGCCTGATGA+TGG + chr5_1:42411951-42411970 None:intergenic 55.0%
! GGTGGGGTTTGAGAGTGTGA+CGG - chr5_1:42412286-42412305 Msa0731500:CDS 55.0%
ACGGTGGAAGGAGGTGGAAA+GGG - chr5_1:42412305-42412324 Msa0731500:CDS 55.0%
GCTCCTGCCATTCCTCGACT+CGG - chr5_1:42406517-42406536 Msa0731500:CDS 60.0%
AGGGACCCAAGATGGGGAAG+AGG - chr5_1:42407090-42407109 Msa0731500:intron 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr5_1:42411571-42411590 Msa0731500:CDS 60.0%
! GGGGTTTGAGAGTGTGACGG+TGG - chr5_1:42412289-42412308 Msa0731500:CDS 60.0%
! GAGAGTGTGACGGTGGAAGG+AGG - chr5_1:42412296-42412315 Msa0731500:CDS 60.0%
AGTGTGACGGTGGAAGGAGG+TGG - chr5_1:42412299-42412318 Msa0731500:CDS 60.0%
GACGGTGGAAGGAGGTGGAA+AGG - chr5_1:42412304-42412323 Msa0731500:CDS 60.0%
GGAGGTGGAAAGGGCGAAGT+TGG - chr5_1:42412314-42412333 Msa0731500:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 42406221 42412627 42406221 ID=Msa0731500;Name=Msa0731500
chr5_1 mRNA 42406221 42412627 42406221 ID=Msa0731500-mRNA-1;Parent=Msa0731500;Name=Msa0731500-mRNA-1;_AED=0.02;_eAED=0.02;_QI=65|1|1|1|1|1|6|167|779
chr5_1 exon 42406221 42406977 42406221 ID=Msa0731500-mRNA-1:exon:12254;Parent=Msa0731500-mRNA-1
chr5_1 exon 42408011 42408775 42408011 ID=Msa0731500-mRNA-1:exon:12253;Parent=Msa0731500-mRNA-1
chr5_1 exon 42409960 42410057 42409960 ID=Msa0731500-mRNA-1:exon:12252;Parent=Msa0731500-mRNA-1
chr5_1 exon 42410493 42410662 42410493 ID=Msa0731500-mRNA-1:exon:12251;Parent=Msa0731500-mRNA-1
chr5_1 exon 42411540 42411842 42411540 ID=Msa0731500-mRNA-1:exon:12250;Parent=Msa0731500-mRNA-1
chr5_1 exon 42412149 42412627 42412149 ID=Msa0731500-mRNA-1:exon:12249;Parent=Msa0731500-mRNA-1
chr5_1 five_prime_UTR 42412563 42412627 42412563 ID=Msa0731500-mRNA-1:five_prime_utr;Parent=Msa0731500-mRNA-1
chr5_1 CDS 42412149 42412562 42412149 ID=Msa0731500-mRNA-1:cds;Parent=Msa0731500-mRNA-1
chr5_1 CDS 42411540 42411842 42411540 ID=Msa0731500-mRNA-1:cds;Parent=Msa0731500-mRNA-1
chr5_1 CDS 42410493 42410662 42410493 ID=Msa0731500-mRNA-1:cds;Parent=Msa0731500-mRNA-1
chr5_1 CDS 42409960 42410057 42409960 ID=Msa0731500-mRNA-1:cds;Parent=Msa0731500-mRNA-1
chr5_1 CDS 42408011 42408775 42408011 ID=Msa0731500-mRNA-1:cds;Parent=Msa0731500-mRNA-1
chr5_1 CDS 42406388 42406977 42406388 ID=Msa0731500-mRNA-1:cds;Parent=Msa0731500-mRNA-1
chr5_1 three_prime_UTR 42406221 42406387 42406221 ID=Msa0731500-mRNA-1:three_prime_utr;Parent=Msa0731500-mRNA-1
Gene Sequence

>Msa0731500

ATGGGTCACTTTTCCATCACCATTGCTTGCATTTTTCTCTTCTTAACTCGCTACCACCAACTCGTTCATGCCGATTCACCAACTCATGTACCTCCTTACTCCTGTGACACCACCAACCCACTTACAAAATCCTTTCCATTCTGCAATCTCAACCTTACCATCACTCAAAGAGCTAAAGACATTGTGTCACGGCTCACATTGGATGAGAAAATCTCTCAACTCGTTAACACAGCTCCTGCCATTCCTCGACTCGGTATACCGAGTTACCAATGGTGGGATGAAGCGTTGCACGGTGTTGCTAATGCCGGTAAAGGGATAAGATTGAATGGCAGTGTTGCAGGTGCTACTAGTTTCCCTCAAGTTATTCTTACTGCTGCTTCTTTTGATCCCAAACTTTGGTACCGAATCAGTAAGGTGATTGGAACTGAGGCTAGAGGAGTGTACAATGCTGGACAAGCCCAAGGGATGACGTTTTGGGCACCAAACATAAACATATTTAGGGACCCAAGATGGGGAAGAGGACAAGAAACAGCTGGTGAAGATCCTTTGGTAAATTCAAAGTATGCTGTTTCCTATGTAAGAGGACTTCAAGGAGATTCCTTTGAAGGTGGGAAACTAATTGGAGGTCGTCTTAAAGCTTCTGCTTGTTGCAAACATTTTACTGCCTATGATTTGGATCATTGGAAGGGTTTGGACCGTTTTGATTTTGATGCCAAAGTTACTTTGCAAGATTTGGCGGATACGTATCAACCCCCATTTCATAGTTGCATAGTACAAGGACGGTCTAGTGGAATAATGTGTGCTTACAACCGTGTCAATGGAGTTCCAAATTGTGCAAATTACAATTTGTTAACCAAAACTGCTAGACAAAAATGGAATTTCAATGGGTATATTACGTCGGATTGTGAAGCAGTAAGAATCATATATGATAATCAAGGTTATGCAAAAACACCAGAGGATGCTGTAGCTGATGTACTTCAAGCTGGGATGGATGTAGAGTGTGGTGATTACTTGACAAAGCATGCAAAGGCAGCAGTACTACAAAAAAAAGTACCAATATCTCAAATTGACCGTGCCCTACACAATCTATTCACCATTAGAATAAGACTAGGCTTGTTTGATGGGAATCCAACCAAACTCCAATATGGCACAATTGGTCCAAACCAAGTCTGCTCTAAAGAAAACCTAGACGTTGCTCTTGAAGCTGCAAGAAGCGGCATTGTACTTTTAAAAAACACTGCCTCAATTCTCCCACTTCCAAGAGTAAATACCCTTGGAGTTATAGGCCCTAATGCCAATAAATCATCTAAAGTTGTTTTAGGAAACTACTTTGGCCGTCCTTGTAGATTAGTACCAATATTAAAAGGATTTTACACTTATGCTAGCCAAACACATTATCGTTCTGGATGTCTTGATGGAACAAAGTGTGCTTCAGCTGAAATCGACCGAGCAGTTGAAGTTGCTAAAATAAGTGATTATGTTATTTTGGTTATGGGATTGGATCAAAGTCAAGAGAGGGAATCACGCGATAGAGATGATTTAGAGTTGCCTGGTAAGCAGCAAGAACTTATTAATAGTGTTGCCAAAGCTTCTAAGAAGCCGGTTATTTTGGTAATTTTGTGTGGTGGTCCTGTTGATATTACTTTTGCTAAGAATAATGACAAAATTGGAGGGATTATTTGGGCTGGTTACCCTGGTGAACTTGGTGGAAAGGCTCTTGCTCAGGTTGTGTTTGGTGACTATAACCCAGGAGGGAGACTACCAATGACATGGTACCCAAAAGATTTCATCAAAATACCAATGACAGACATGAGAATGAGAGCTGATCCATCATCAGGCTATCCCGGTAGAACCTACCGTTTCTACACAGGTCCAAAGGTCTACGAATTCGGCTATGGCCTAAGCTACTCAAATTATTCCTACAACTTCATTTCTGTCAAAAACAACAACCTTCACATCAACCAATCAACCACTCATTCGATACTCGAAAACTCTGAAACAATCCATTACAAGCTTGTTTCAGAGTTGGGCGAAGAAACATGTCAAACCATGTCAATTTCTGTCACATTGGGAATTACAAATACTGGAAGCATGGCTGGAAAACATCCTGTGTTGCTGTTTGTGAAGCCAAAGAAAGGTAGAAATGGAAATCCAGTGAAACAGTTGGTGGGGTTTGAGAGTGTGACGGTGGAAGGAGGTGGAAAGGGCGAAGTTGGATTTGAAGTTAGTGTTTGTGAGCATCTTAGTAGAGCAAATGAGAGTGGTGTAAAGGTGGTTGAAGAAGGTGGTTATTTGTTGGTTGTGGGAGAGGAAGAGTACTCAATAAGTATCACTGTTTAA
Protein sequence

>Msa0731500

MGHFSITIACIFLFLTRYHQLVHADSPTHVPPYSCDTTNPLTKSFPFCNLNLTITQRAKDIVSRLTLDEKISQLVNTAPAIPRLGIPSYQWWDEALHGVANAGKGIRLNGSVAGATSFPQVILTAASFDPKLWYRISKVIGTEARGVYNAGQAQGMTFWAPNINIFRDPRWGRGQETAGEDPLVNSKYAVSYVRGLQGDSFEGGKLIGGRLKASACCKHFTAYDLDHWKGLDRFDFDAKVTLQDLADTYQPPFHSCIVQGRSSGIMCAYNRVNGVPNCANYNLLTKTARQKWNFNGYITSDCEAVRIIYDNQGYAKTPEDAVADVLQAGMDVECGDYLTKHAKAAVLQKKVPISQIDRALHNLFTIRIRLGLFDGNPTKLQYGTIGPNQVCSKENLDVALEAARSGIVLLKNTASILPLPRVNTLGVIGPNANKSSKVVLGNYFGRPCRLVPILKGFYTYASQTHYRSGCLDGTKCASAEIDRAVEVAKISDYVILVMGLDQSQERESRDRDDLELPGKQQELINSVAKASKKPVILVILCGGPVDITFAKNNDKIGGIIWAGYPGELGGKALAQVVFGDYNPGGRLPMTWYPKDFIKIPMTDMRMRADPSSGYPGRTYRFYTGPKVYEFGYGLSYSNYSYNFISVKNNNLHINQSTTHSILENSETIHYKLVSELGEETCQTMSISVTLGITNTGSMAGKHPVLLFVKPKKGRNGNPVKQLVGFESVTVEGGGKGEVGFEVSVCEHLSRANESGVKVVEEGGYLLVVGEEEYSISITV*