Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144300 | G7K6S6 | 96.465 | 396 | 7 | 3 | 1 | 395 | 1 | 390 | 0.0 | 769 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0144300 | 0.807324 | 5.345180e-50 | -8.615850e-47 |
| Msa0140820 | Msa0144300 | 0.818671 | 1.735856e-52 | -8.615850e-47 |
| Msa0144300 | Msa0524500 | 0.819891 | 9.153371e-53 | -8.615850e-47 |
| Msa0144300 | Msa0731500 | 0.811085 | 8.349725e-51 | -8.615850e-47 |
| Msa0144300 | Msa0756060 | 0.805235 | 1.472049e-49 | -8.615850e-47 |
| Msa0144300 | Msa0760470 | 0.942321 | 8.835772e-102 | -8.615850e-47 |
| Msa0144300 | Msa0881460 | 0.811218 | 7.814948e-51 | -8.615850e-47 |
| Msa0144300 | Msa1012790 | 0.826544 | 2.560074e-54 | -8.615850e-47 |
| Msa0144300 | Msa1130980 | 0.802383 | 5.759120e-49 | -8.615850e-47 |
| Msa0144300 | Msa1134110 | 0.808137 | 3.589905e-50 | -8.615850e-47 |
| Msa0144300 | Msa1189070 | 0.800432 | 1.445344e-48 | -8.615850e-47 |
| Msa0144300 | Msa1284550 | 0.800983 | 1.115679e-48 | -8.615850e-47 |
| Msa0144300 | Msa1418340 | 0.803221 | 3.865484e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144300 | MtrunA17_Chr5g0409191 | 96.465 | 396 | 7 | 3 | 1 | 395 | 1 | 390 | 0.0 | 769 |
| Msa0144300 | MtrunA17_Chr3g0126961 | 33.663 | 202 | 108 | 3 | 209 | 384 | 595 | 796 | 2.03e-22 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144300 | AT3G45900.1 | 53.865 | 401 | 140 | 9 | 9 | 395 | 20 | 389 | 1.41e-115 | 342 |
| Msa0144300 | AT5G53020.2 | 34.211 | 190 | 95 | 5 | 219 | 379 | 509 | 697 | 2.71e-20 | 93.6 |
| Msa0144300 | AT5G53020.3 | 34.211 | 190 | 95 | 5 | 219 | 379 | 518 | 706 | 2.84e-20 | 93.6 |
| Msa0144300 | AT5G53020.4 | 34.211 | 190 | 95 | 5 | 219 | 379 | 518 | 706 | 2.84e-20 | 93.6 |
| Msa0144300 | AT5G53020.5 | 34.211 | 190 | 95 | 5 | 219 | 379 | 518 | 706 | 2.84e-20 | 93.6 |
| Msa0144300 | AT5G53020.1 | 34.211 | 190 | 95 | 5 | 219 | 379 | 518 | 706 | 2.84e-20 | 93.6 |
| Msa0144300 | AT5G53020.8 | 34.211 | 190 | 95 | 5 | 219 | 379 | 518 | 706 | 2.84e-20 | 93.6 |
| Msa0144300 | AT5G53020.10 | 34.211 | 190 | 95 | 5 | 219 | 379 | 518 | 706 | 2.84e-20 | 93.6 |
| Msa0144300 | AT5G53020.9 | 34.211 | 190 | 95 | 5 | 219 | 379 | 518 | 706 | 2.84e-20 | 93.6 |
| Msa0144300 | AT5G53020.6 | 34.031 | 191 | 95 | 5 | 219 | 379 | 518 | 707 | 3.60e-20 | 93.2 |
| Msa0144300 | AT5G53020.7 | 34.031 | 191 | 95 | 5 | 219 | 379 | 518 | 707 | 3.60e-20 | 93.2 |
Find 101 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTGGTGGTTCTAAGTTC+TGG | 0.218734 | 1_4:-3754769 | Msa0144300:CDS |
| ACCTAACAAGTTAGCTCTTT+TGG | 0.227504 | 1_4:-3751834 | Msa0144300:three_prime_UTR |
| GTTTATTTCAAGAAGGTTTC+AGG | 0.228467 | 1_4:-3754930 | Msa0144300:CDS |
| TTCAAGTAGTTTAAGTTTAG+AGG | 0.228999 | 1_4:+3752567 | None:intergenic |
| CATACCACATTTGCTAATAT+TGG | 0.241224 | 1_4:-3751754 | Msa0144300:three_prime_UTR |
| CTCGAGATCGCCAATGATTC+TGG | 0.267321 | 1_4:+3751962 | None:intergenic |
| TCAGAATCAAATCCATTATT+AGG | 0.269450 | 1_4:+3754794 | None:intergenic |
| GAGGAGGGATTGGGTGGGTG+CGG | 0.272740 | 1_4:-3754905 | Msa0144300:CDS |
| TGGCGATCTCGAGGGGATTC+TGG | 0.281079 | 1_4:-3751952 | Msa0144300:CDS |
| TTCTGGTGGTTCTAAGTTCT+GGG | 0.285384 | 1_4:-3754768 | Msa0144300:CDS |
| GTTTCAGGAGGAGGAGGGAT+TGG | 0.302065 | 1_4:-3754915 | Msa0144300:CDS |
| ACTAACGACAAGACGGTCTA+TGG | 0.315792 | 1_4:-3752039 | Msa0144300:CDS |
| AATCAGCATCTTCCTAATAA+TGG | 0.316032 | 1_4:-3754806 | Msa0144300:CDS |
| TAAGGCGCGTGTGGAGGATT+TGG | 0.323322 | 1_4:-3754987 | Msa0144300:CDS |
| CCTCCCTCAGTTCAGAATTT+CGG | 0.352653 | 1_4:-3752199 | Msa0144300:CDS |
| CGGGAGTAGGGAAGATATGG+TGG | 0.355026 | 1_4:-3754885 | Msa0144300:CDS |
| CAGGAGGAGGAGGGATTGGG+TGG | 0.359104 | 1_4:-3754911 | Msa0144300:CDS |
| TGAATCACCATCTACCTTCC+AGG | 0.364048 | 1_4:+3752600 | None:intergenic |
| CTTTGCCTGCTTCTTTATTG+AGG | 0.375585 | 1_4:+3752489 | None:intergenic |
| TTTCAGGAGGAGGAGGGATT+GGG | 0.380363 | 1_4:-3754914 | Msa0144300:CDS |
| CTCAGATTCTATTGAACAAA+AGG | 0.382171 | 1_4:+3751882 | None:intergenic |
| GGGCTGAGAAAGCTTCATTA+TGG | 0.384555 | 1_4:-3754748 | Msa0144300:CDS |
| CAGAGAATTACAGCGAAATC+TGG | 0.388856 | 1_4:-3751997 | Msa0144300:CDS |
| AGCGGTGGTGGAAGATTCTA+AGG | 0.392115 | 1_4:-3755005 | Msa0144300:CDS |
| GATTGGGTGGGTGCGGGAGT+AGG | 0.397006 | 1_4:-3754898 | Msa0144300:CDS |
| ATTGGGTGGGTGCGGGAGTA+GGG | 0.398786 | 1_4:-3754897 | Msa0144300:CDS |
| TTGCTTTGTAGTCTTCTTGT+CGG | 0.402931 | 1_4:+3755137 | None:intergenic |
| TTCAAGAAGGTTTCAGGAGG+AGG | 0.407039 | 1_4:-3754924 | Msa0144300:CDS |
| TAAACTTAAACTACTTGAAC+AGG | 0.409685 | 1_4:-3752563 | Msa0144300:CDS |
| ACCAAAAGAGCTAACTTGTT+AGG | 0.414869 | 1_4:+3751833 | None:intergenic |
| GTTGAGAGAGATGAGATGAT+TGG | 0.415833 | 1_4:-3754953 | Msa0144300:CDS |
| AGGAGGGATTGGGTGGGTGC+GGG | 0.417088 | 1_4:-3754904 | Msa0144300:CDS |
| GGAAGCATTCCGGCTTCAAC+AGG | 0.422920 | 1_4:-3752150 | Msa0144300:CDS |
| TACAGCGAAATCTGGAGATA+TGG | 0.434552 | 1_4:-3751989 | Msa0144300:CDS |
| TTATTAACTCTGGATAAGAT+TGG | 0.439714 | 1_4:-3752538 | Msa0144300:CDS |
| TTGAGAGAGATGAGATGATT+GGG | 0.444007 | 1_4:-3754952 | Msa0144300:CDS |
| GTGCGGGAGTAGGGAAGATA+TGG | 0.447072 | 1_4:-3754888 | Msa0144300:CDS |
| ATATGGTTGGCCAGAATCAT+TGG | 0.454079 | 1_4:-3751972 | Msa0144300:CDS |
| CGTGAGGTTGAGAGCGGTGG+TGG | 0.454457 | 1_4:-3755017 | Msa0144300:CDS |
| TCGTATTATACATTGATTCA+AGG | 0.456785 | 1_4:+3752740 | None:intergenic |
| GACGGTCTATGGACTCAATT+CGG | 0.457752 | 1_4:-3752028 | Msa0144300:CDS |
| TGAAACTGCACAGAAACTAA+TGG | 0.463437 | 1_4:-3752120 | Msa0144300:CDS |
| TGAGAAAGCTTCATTATGGC+AGG | 0.479549 | 1_4:-3754744 | Msa0144300:intron |
| AAGAAGGTTTCAGGAGGAGG+AGG | 0.480080 | 1_4:-3754921 | Msa0144300:CDS |
| CTTTATTGAGGATGATACCT+TGG | 0.489617 | 1_4:+3752501 | None:intergenic |
| CGTATTATACATTGATTCAA+GGG | 0.493230 | 1_4:+3752741 | None:intergenic |
| ATCATCCTCAATAAAGAAGC+AGG | 0.495600 | 1_4:-3752494 | Msa0144300:CDS |
| GAATGTTGTCGAAGGTTTGT+TGG | 0.500287 | 1_4:+3755208 | None:intergenic |
| ATTGTTGAAGTACATAAAAG+TGG | 0.504064 | 1_4:-3751804 | Msa0144300:three_prime_UTR |
| TGAACAGGAATTATTAACTC+TGG | 0.504596 | 1_4:-3752548 | Msa0144300:CDS |
| CAGATGCATCCTGTTGAAGC+CGG | 0.507297 | 1_4:+3752141 | None:intergenic |
| ATTGAGGATGATACCTTGGA+CGG | 0.508080 | 1_4:+3752505 | None:intergenic |
| CAATAGAATCTGAGAATGCT+AGG | 0.509965 | 1_4:-3751873 | Msa0144300:exon |
| ATGGCATTGCATACTGAAGT+CGG | 0.513336 | 1_4:-3752101 | Msa0144300:CDS |
| AAGGTAGATGGTGATTCAGC+TGG | 0.514443 | 1_4:-3752595 | Msa0144300:CDS |
| GATGCCAATATTAGCAAATG+TGG | 0.528322 | 1_4:+3751750 | None:intergenic |
| CATTACAAGGATGAGTTAAG+AGG | 0.534473 | 1_4:-3752071 | Msa0144300:CDS |
| TGGCATTGCATACTGAAGTC+GGG | 0.534491 | 1_4:-3752100 | Msa0144300:CDS |
| ATCTCGAGGGGATTCTGGCA+AGG | 0.536858 | 1_4:-3751947 | Msa0144300:CDS |
| CTTGTTAGGTTGAGAAAGTG+AGG | 0.539882 | 1_4:+3751847 | None:intergenic |
| TGATTGGGTTTATTTCAAGA+AGG | 0.539944 | 1_4:-3754937 | Msa0144300:CDS |
| AAGCTCTTCTTCAGCACGAA+TGG | 0.545342 | 1_4:+3755177 | None:intergenic |
| GAATCACCATCTACCTTCCA+GGG | 0.547805 | 1_4:+3752601 | None:intergenic |
| AGGAGGAGGAGGGATTGGGT+GGG | 0.559031 | 1_4:-3754910 | Msa0144300:CDS |
| CCGAAATTCTGAACTGAGGG+AGG | 0.560591 | 1_4:+3752199 | None:intergenic |
| GAGGGGATTCTGGCAAGGGA+CGG | 0.560986 | 1_4:-3751942 | Msa0144300:CDS |
| AACTCTGGATAAGATTGGTA+AGG | 0.562737 | 1_4:-3752533 | Msa0144300:CDS |
| ACGAGGAGAAGCGTCTCTTA+CGG | 0.565016 | 1_4:-3755066 | Msa0144300:CDS |
| TGGTAAGGATGTTCCGTCCA+AGG | 0.566141 | 1_4:-3752518 | Msa0144300:CDS |
| AGAAGGTTTCAGGAGGAGGA+GGG | 0.566753 | 1_4:-3754920 | Msa0144300:CDS |
| CAGAATCATTGGCGATCTCG+AGG | 0.578159 | 1_4:-3751961 | Msa0144300:CDS |
| GGGAGTAGGGAAGATATGGT+GGG | 0.579206 | 1_4:-3754884 | Msa0144300:CDS |
| GGTCCGAAATTCTGAACTGA+GGG | 0.585159 | 1_4:+3752196 | None:intergenic |
| TCTGTGTGAAGCGAAGATCT+CGG | 0.591350 | 1_4:+3755102 | None:intergenic |
| TCTCGAGGGGATTCTGGCAA+GGG | 0.591487 | 1_4:-3751946 | Msa0144300:CDS |
| GCGAAATCTGGAGATATGGT+TGG | 0.592039 | 1_4:-3751985 | Msa0144300:CDS |
| AGAATCATTGGCGATCTCGA+GGG | 0.600514 | 1_4:-3751960 | Msa0144300:CDS |
| GGAAGATTCTAAGGCGCGTG+TGG | 0.601842 | 1_4:-3754996 | Msa0144300:CDS |
| ACGGCGAATCGACGCCGCGT+CGG | 0.603319 | 1_4:-3755047 | Msa0144300:CDS |
| GATCGTGAGGTTGAGAGCGG+TGG | 0.607480 | 1_4:-3755020 | Msa0144300:CDS |
| TCGCTTCACACAGAAACTCA+TGG | 0.608090 | 1_4:-3755093 | Msa0144300:CDS |
| AGATTCTAAGGCGCGTGTGG+AGG | 0.609014 | 1_4:-3754993 | Msa0144300:CDS |
| GCGAATCGACGCCGCGTCGG+AGG | 0.609329 | 1_4:-3755044 | Msa0144300:CDS |
| GGGTCCGAAATTCTGAACTG+AGG | 0.615960 | 1_4:+3752195 | None:intergenic |
| GAATCATTGGCGATCTCGAG+GGG | 0.617453 | 1_4:-3751959 | Msa0144300:CDS |
| TGCGTTGAGAATGTTGTCGA+AGG | 0.619261 | 1_4:+3755200 | None:intergenic |
| GAACTGAGGGAGGGTTCGCA+CGG | 0.623877 | 1_4:+3752209 | None:intergenic |
| AGTCGGGAAGACTCATTACA+AGG | 0.641833 | 1_4:-3752084 | Msa0144300:CDS |
| ATACGAAACAGTTTGTAGCA+AGG | 0.644445 | 1_4:-3752723 | Msa0144300:intron |
| TATTTCAAGAAGGTTTCAGG+AGG | 0.645074 | 1_4:-3754927 | Msa0144300:CDS |
| TATGGTGGGGAGCACTGCTG+AGG | 0.648567 | 1_4:-3754870 | Msa0144300:CDS |
| CGAAATTCTGAACTGAGGGA+GGG | 0.655327 | 1_4:+3752200 | None:intergenic |
| CAGAAACTCATGGCGCGACG+AGG | 0.662194 | 1_4:-3755083 | Msa0144300:CDS |
| GGAGTAGGGAAGATATGGTG+GGG | 0.664501 | 1_4:-3754883 | Msa0144300:CDS |
| AAATCACACTAACGACAAGA+CGG | 0.664620 | 1_4:-3752046 | Msa0144300:CDS |
| TGTGGAGGATTTGGAGCGTG+AGG | 0.669922 | 1_4:-3754978 | Msa0144300:CDS |
| CCGCGTCGGAGGAGATCGTG+AGG | 0.675156 | 1_4:-3755033 | Msa0144300:CDS |
| AATCACCATCTACCTTCCAG+GGG | 0.698962 | 1_4:+3752602 | None:intergenic |
| GGAGATCGTGAGGTTGAGAG+CGG | 0.699635 | 1_4:-3755023 | Msa0144300:CDS |
| CCTCACGATCTCCTCCGACG+CGG | 0.747474 | 1_4:+3755033 | None:intergenic |
| ATCACCATCTACCTTCCAGG+GGG | 0.750416 | 1_4:+3752603 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAATACATAAAAAAGTT+GGG | + | chr1_4:3752989-3753008 | None:intergenic | 15.0% |
| !! | AAAAATGAGTAGTTAAAATT+AGG | - | chr1_4:3753591-3753610 | Msa0144300:intron | 15.0% |
| !!! | AAGCTATTTTCTTCATATAT+AGG | - | chr1_4:3751783-3751802 | Msa0144300:three_prime_UTR | 20.0% |
| !! | AAATCAAATCAAATCCAAAA+GGG | + | chr1_4:3752368-3752387 | None:intergenic | 20.0% |
| !! | TGAATATAATATGCTGATAA+TGG | - | chr1_4:3752547-3752566 | Msa0144300:CDS | 20.0% |
| !! | TATAAACTATGTCTACTTAT+CGG | + | chr1_4:3752623-3752642 | None:intergenic | 20.0% |
| !! | CAACAAATACATAAAAAAGT+TGG | + | chr1_4:3752990-3753009 | None:intergenic | 20.0% |
| !!! | ACTTTTTTATGTATTTGTTG+TGG | - | chr1_4:3752990-3753009 | Msa0144300:intron | 20.0% |
| !! | AAAAACAGACAAATAACAAA+TGG | + | chr1_4:3753089-3753108 | None:intergenic | 20.0% |
| !!! | GTAATGCTATTTAAGATTTT+AGG | + | chr1_4:3753868-3753887 | None:intergenic | 20.0% |
| !! | AATATAAGCAAGTTTGTAAT+GGG | + | chr1_4:3754706-3754725 | None:intergenic | 20.0% |
| ! | TCAGAATCAAATCCATTATT+AGG | + | chr1_4:3752254-3752273 | None:intergenic | 25.0% |
| ! | CAAATCAAATCAAATCCAAA+AGG | + | chr1_4:3752369-3752388 | None:intergenic | 25.0% |
| !! | AGCTTTTTACTCAATTTTCA+AGG | - | chr1_4:3752918-3752937 | Msa0144300:intron | 25.0% |
| ! | ATGGTAAAAGGAATTAAACA+TGG | + | chr1_4:3753036-3753055 | None:intergenic | 25.0% |
| ! | AAATAACAAATGGATGTACA+TGG | + | chr1_4:3753079-3753098 | None:intergenic | 25.0% |
| ! | TTGCTAATATTGTTTGGTTA+GGG | - | chr1_4:3753265-3753284 | Msa0144300:intron | 25.0% |
| !! | TTACAGCTCTTTTGTATAAT+TGG | - | chr1_4:3753513-3753532 | Msa0144300:intron | 25.0% |
| !!! | TGTTGCTATTTATATTTGGT+AGG | + | chr1_4:3753764-3753783 | None:intergenic | 25.0% |
| !!! | TGCATGTTGCTATTTATATT+TGG | + | chr1_4:3753768-3753787 | None:intergenic | 25.0% |
| !! | TATGACATTGCACTTAATTT+TGG | - | chr1_4:3753820-3753839 | Msa0144300:intron | 25.0% |
| !! | TATAGTTTGCATTTCTGATA+GGG | + | chr1_4:3754159-3754178 | None:intergenic | 25.0% |
| !! | TTATAGTTTGCATTTCTGAT+AGG | + | chr1_4:3754160-3754179 | None:intergenic | 25.0% |
| ! | ATGCAAACTATAATGTTGTT+AGG | - | chr1_4:3754167-3754186 | Msa0144300:intron | 25.0% |
| ! | TGCAAACTATAATGTTGTTA+GGG | - | chr1_4:3754168-3754187 | Msa0144300:intron | 25.0% |
| ! | GTTTGTCTGTATAATTTACT+TGG | - | chr1_4:3754190-3754209 | Msa0144300:intron | 25.0% |
| !!! | CGTATTATACATTGATTCAA+GGG | + | chr1_4:3754307-3754326 | None:intergenic | 25.0% |
| !!! | TCGTATTATACATTGATTCA+AGG | + | chr1_4:3754308-3754327 | None:intergenic | 25.0% |
| ! | TTCATTTAGTTGGAGAATAA+TGG | + | chr1_4:3754392-3754411 | None:intergenic | 25.0% |
| ! | ATTATTCTCCAACTAAATGA+AGG | - | chr1_4:3754391-3754410 | Msa0144300:intron | 25.0% |
| ! | TTATTCTCCAACTAAATGAA+GGG | - | chr1_4:3754392-3754411 | Msa0144300:intron | 25.0% |
| !! | TTCAAGTAGTTTAAGTTTAG+AGG | + | chr1_4:3754481-3754500 | None:intergenic | 25.0% |
| ! | TAAACTTAAACTACTTGAAC+AGG | - | chr1_4:3754482-3754501 | Msa0144300:intron | 25.0% |
| ! | TTATTAACTCTGGATAAGAT+TGG | - | chr1_4:3754507-3754526 | Msa0144300:intron | 25.0% |
| ! | CAATATAAGCAAGTTTGTAA+TGG | + | chr1_4:3754707-3754726 | None:intergenic | 25.0% |
| ! | TTTATTATCTCACTTAAACC+TGG | - | chr1_4:3754736-3754755 | Msa0144300:intron | 25.0% |
| !! | TAAAAACTCTGTTTGAGTTT+GGG | + | chr1_4:3754873-3754892 | None:intergenic | 25.0% |
| ! | ATTGTTGAAGTACATAAAAG+TGG | - | chr1_4:3755241-3755260 | Msa0144300:CDS | 25.0% |
| TGATTGGGTTTATTTCAAGA+AGG | - | chr1_4:3752108-3752127 | Msa0144300:CDS | 30.0% | |
| GTTTATTTCAAGAAGGTTTC+AGG | - | chr1_4:3752115-3752134 | Msa0144300:CDS | 30.0% | |
| AATCAGCATCTTCCTAATAA+TGG | - | chr1_4:3752239-3752258 | Msa0144300:intron | 30.0% | |
| !! | TAATATGCTGATAATGGTGA+TGG | - | chr1_4:3752553-3752572 | Msa0144300:CDS | 30.0% |
| TGAAAGTGATTGAATGCAAT+TGG | - | chr1_4:3752654-3752673 | Msa0144300:intron | 30.0% | |
| GAAAGTGATTGAATGCAATT+GGG | - | chr1_4:3752655-3752674 | Msa0144300:intron | 30.0% | |
| TTGAAGTGTATGTAGAAAGT+AGG | - | chr1_4:3752855-3752874 | Msa0144300:intron | 30.0% | |
| !! | TTTTCAAGGTAACTGACTTT+AGG | - | chr1_4:3752932-3752951 | Msa0144300:intron | 30.0% |
| CTATGAACTTGAATGGTAAA+AGG | + | chr1_4:3753048-3753067 | None:intergenic | 30.0% | |
| ! | TTTACCATTCAAGTTCATAG+TGG | - | chr1_4:3753048-3753067 | Msa0144300:intron | 30.0% |
| !! | TGCAACTTGCTAATATTGTT+TGG | - | chr1_4:3753259-3753278 | Msa0144300:intron | 30.0% |
| CTTGCTAATATTGTTTGGTT+AGG | - | chr1_4:3753264-3753283 | Msa0144300:intron | 30.0% | |
| TAATATTGTTTGGTTAGGGT+AGG | - | chr1_4:3753269-3753288 | Msa0144300:intron | 30.0% | |
| AATATTGTTTGGTTAGGGTA+GGG | - | chr1_4:3753270-3753289 | Msa0144300:intron | 30.0% | |
| ! | TACATGTTTTGCTTCAATAG+TGG | - | chr1_4:3753412-3753431 | Msa0144300:intron | 30.0% |
| !! | TATAGTTGAAGGGTGTTAAA+TGG | + | chr1_4:3753802-3753821 | None:intergenic | 30.0% |
| TGCAATGTCATATAGTTGAA+GGG | + | chr1_4:3753812-3753831 | None:intergenic | 30.0% | |
| ! | ACATTGCACTTAATTTTGGA+AGG | - | chr1_4:3753824-3753843 | Msa0144300:intron | 30.0% |
| ! | TCTATAGTTTGCATTTCTGA+TGG | + | chr1_4:3753964-3753983 | None:intergenic | 30.0% |
| ATCAGAAATGCAAACTATAG+AGG | - | chr1_4:3753963-3753982 | Msa0144300:intron | 30.0% | |
| TCAGAAATGCAAACTATAGA+GGG | - | chr1_4:3753964-3753983 | Msa0144300:intron | 30.0% | |
| TGTCAATTAAAAGTTGAAGC+TGG | - | chr1_4:3754234-3754253 | Msa0144300:intron | 30.0% | |
| TTAAATGTTTATACGCTTGC+AGG | - | chr1_4:3754266-3754285 | Msa0144300:intron | 30.0% | |
| CAATTTACCCTTCATTTAGT+TGG | + | chr1_4:3754402-3754421 | None:intergenic | 30.0% | |
| !! | TAAATTGTTTTTCCCTCAGA+AGG | - | chr1_4:3754415-3754434 | Msa0144300:intron | 30.0% |
| !! | AAATTGTTTTTCCCTCAGAA+GGG | - | chr1_4:3754416-3754435 | Msa0144300:intron | 30.0% |
| TGAACAGGAATTATTAACTC+TGG | - | chr1_4:3754497-3754516 | Msa0144300:intron | 30.0% | |
| ! | GTAAAAACTCTGTTTGAGTT+TGG | + | chr1_4:3754874-3754893 | None:intergenic | 30.0% |
| ! | AACTCAAACAGAGTTTTTAC+TGG | - | chr1_4:3754874-3754893 | Msa0144300:CDS | 30.0% |
| CTCAGATTCTATTGAACAAA+AGG | + | chr1_4:3755166-3755185 | None:intergenic | 30.0% | |
| ! | CATACCACATTTGCTAATAT+TGG | - | chr1_4:3755291-3755310 | Msa0144300:CDS | 30.0% |
| TTGCTTTGTAGTCTTCTTGT+CGG | + | chr1_4:3751911-3751930 | None:intergenic | 35.0% | |
| TTGAGAGAGATGAGATGATT+GGG | - | chr1_4:3752093-3752112 | Msa0144300:CDS | 35.0% | |
| TATTTCAAGAAGGTTTCAGG+AGG | - | chr1_4:3752118-3752137 | Msa0144300:CDS | 35.0% | |
| ! | GGATTTGATTCTGAGTTTTC+TGG | - | chr1_4:3752260-3752279 | Msa0144300:intron | 35.0% |
| ! | TTTGATTCTGAGTTTTCTGG+TGG | - | chr1_4:3752263-3752282 | Msa0144300:intron | 35.0% |
| ! | ATTACCATGTGTTACCCTTT+TGG | - | chr1_4:3752351-3752370 | Msa0144300:intron | 35.0% |
| AAATCCAAAAGGGTAACACA+TGG | + | chr1_4:3752358-3752377 | None:intergenic | 35.0% | |
| !! | ACAGTAGAAAGTGTTAGTTG+AGG | - | chr1_4:3752424-3752443 | Msa0144300:intron | 35.0% |
| CGAACATGATACTGATATGT+AGG | - | chr1_4:3752731-3752750 | Msa0144300:CDS | 35.0% | |
| TGTATGTAGAAAGTAGGTCA+GGG | - | chr1_4:3752861-3752880 | Msa0144300:intron | 35.0% | |
| AAATTGAGTAAAAAGCTGCG+TGG | + | chr1_4:3752915-3752934 | None:intergenic | 35.0% | |
| ! | ACTTTAGGAGATTCCTTTCT+TGG | - | chr1_4:3752947-3752966 | Msa0144300:intron | 35.0% |
| ! | CTTTAGGAGATTCCTTTCTT+GGG | - | chr1_4:3752948-3752967 | Msa0144300:intron | 35.0% |
| !! | TATGTATTTGTTGTGGCAAC+TGG | - | chr1_4:3752997-3753016 | Msa0144300:intron | 35.0% |
| !! | ATGTATTTGTTGTGGCAACT+GGG | - | chr1_4:3752998-3753017 | Msa0144300:intron | 35.0% |
| !!! | CTCTATTGTTTTTGCTTTGC+TGG | - | chr1_4:3753134-3753153 | Msa0144300:intron | 35.0% |
| ATGCCTGCTGAAAATTAAAG+TGG | + | chr1_4:3753161-3753180 | None:intergenic | 35.0% | |
| CATTAGTCACTGTTTGTATC+TGG | - | chr1_4:3753178-3753197 | Msa0144300:intron | 35.0% | |
| AGATAAAACTAATTACCCCC+TGG | + | chr1_4:3753491-3753510 | None:intergenic | 35.0% | |
| TTCTTTACTCCTTGTTCTCT+CGG | - | chr1_4:3753615-3753634 | Msa0144300:intron | 35.0% | |
| TTTGAATGTCCCTAGAAATG+TGG | - | chr1_4:3753638-3753657 | Msa0144300:intron | 35.0% | |
| CGAGTTTAACCACATTTCTA+GGG | + | chr1_4:3753650-3753669 | None:intergenic | 35.0% | |
| TCGAGTTTAACCACATTTCT+AGG | + | chr1_4:3753651-3753670 | None:intergenic | 35.0% | |
| GAAATTGTACGATCAGTCAT+AGG | - | chr1_4:3753669-3753688 | Msa0144300:intron | 35.0% | |
| CACTGTTTGTTTGTGAAAGA+TGG | - | chr1_4:3753723-3753742 | Msa0144300:intron | 35.0% | |
| GTGCAATGTCATATAGTTGA+AGG | + | chr1_4:3753813-3753832 | None:intergenic | 35.0% | |
| CAATGTAACATTCTGACCTA+AGG | - | chr1_4:3753905-3753924 | Msa0144300:intron | 35.0% | |
| ACAACCTCTTGTGTAAAAAC+AGG | - | chr1_4:3754053-3754072 | Msa0144300:intron | 35.0% | |
| CAACCTCTTGTGTAAAAACA+GGG | - | chr1_4:3754054-3754073 | Msa0144300:intron | 35.0% | |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | chr1_4:3754060-3754079 | None:intergenic | 35.0% |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr1_4:3754059-3754078 | Msa0144300:intron | 35.0% | |
| ATACGAAACAGTTTGTAGCA+AGG | - | chr1_4:3754322-3754341 | Msa0144300:intron | 35.0% | |
| AACTCTGGATAAGATTGGTA+AGG | - | chr1_4:3754512-3754531 | Msa0144300:intron | 35.0% | |
| CTTTATTGAGGATGATACCT+TGG | + | chr1_4:3754547-3754566 | None:intergenic | 35.0% | |
| ATCATCCTCAATAAAGAAGC+AGG | - | chr1_4:3754551-3754570 | Msa0144300:intron | 35.0% | |
| ! | TTGTAATGGGACCATTGTTT+CGG | + | chr1_4:3754693-3754712 | None:intergenic | 35.0% |
| ATCAGGCTCAAAACTACAAA+TGG | + | chr1_4:3754789-3754808 | None:intergenic | 35.0% | |
| TGTTCGAAAACAGAGAAATC+AGG | + | chr1_4:3754806-3754825 | None:intergenic | 35.0% | |
| ! | TGATTTCTCTGTTTTCGAAC+AGG | - | chr1_4:3754805-3754824 | Msa0144300:CDS | 35.0% |
| !!! | AGTTTTTACTGGAAGCATTC+CGG | - | chr1_4:3754885-3754904 | Msa0144300:CDS | 35.0% |
| TGAAACTGCACAGAAACTAA+TGG | - | chr1_4:3754925-3754944 | Msa0144300:CDS | 35.0% | |
| CATTACAAGGATGAGTTAAG+AGG | - | chr1_4:3754974-3754993 | Msa0144300:CDS | 35.0% | |
| AAATCACACTAACGACAAGA+CGG | - | chr1_4:3754999-3755018 | Msa0144300:CDS | 35.0% | |
| CAATAGAATCTGAGAATGCT+AGG | - | chr1_4:3755172-3755191 | Msa0144300:CDS | 35.0% | |
| !! | ACCTAACAAGTTAGCTCTTT+TGG | - | chr1_4:3755211-3755230 | Msa0144300:CDS | 35.0% |
| !! | ACCAAAAGAGCTAACTTGTT+AGG | + | chr1_4:3755215-3755234 | None:intergenic | 35.0% |
| GATGCCAATATTAGCAAATG+TGG | + | chr1_4:3755298-3755317 | None:intergenic | 35.0% | |
| GAATGTTGTCGAAGGTTTGT+TGG | + | chr1_4:3751840-3751859 | None:intergenic | 40.0% | |
| GTTGAGAGAGATGAGATGAT+TGG | - | chr1_4:3752092-3752111 | Msa0144300:CDS | 40.0% | |
| !! | TTTCTGGTGGTTCTAAGTTC+TGG | - | chr1_4:3752276-3752295 | Msa0144300:intron | 40.0% |
| !! | TTCTGGTGGTTCTAAGTTCT+GGG | - | chr1_4:3752277-3752296 | Msa0144300:intron | 40.0% |
| TGAGAAAGCTTCATTATGGC+AGG | - | chr1_4:3752301-3752320 | Msa0144300:intron | 40.0% | |
| TCAGACACACCTTTGATTGA+AGG | - | chr1_4:3752692-3752711 | Msa0144300:intron | 40.0% | |
| ! | ACACCTTTGATTGAAGGTGT+TGG | - | chr1_4:3752698-3752717 | Msa0144300:intron | 40.0% |
| GTGTATGTAGAAAGTAGGTC+AGG | - | chr1_4:3752860-3752879 | Msa0144300:intron | 40.0% | |
| GTATGTAGAAAGTAGGTCAG+GGG | - | chr1_4:3752862-3752881 | Msa0144300:intron | 40.0% | |
| AATTCTACCGTACCCAAGAA+AGG | + | chr1_4:3752963-3752982 | None:intergenic | 40.0% | |
| TTTCTTGGGTACGGTAGAAT+TGG | - | chr1_4:3752962-3752981 | Msa0144300:intron | 40.0% | |
| !! | TGTATTTGTTGTGGCAACTG+GGG | - | chr1_4:3752999-3753018 | Msa0144300:intron | 40.0% |
| ! | ACCATTCAAGTTCATAGTGG+TGG | - | chr1_4:3753051-3753070 | Msa0144300:intron | 40.0% |
| TCCACCACTATGAACTTGAA+TGG | + | chr1_4:3753055-3753074 | None:intergenic | 40.0% | |
| GTACACATTGCTACAAGAGA+AGG | + | chr1_4:3753115-3753134 | None:intergenic | 40.0% | |
| !! | GGTCCACTTTAATTTTCAGC+AGG | - | chr1_4:3753155-3753174 | Msa0144300:intron | 40.0% |
| ! | TGTATCTGGTGCTGAAATCT+AGG | - | chr1_4:3753192-3753211 | Msa0144300:intron | 40.0% |
| ! | GTATCTGGTGCTGAAATCTA+GGG | - | chr1_4:3753193-3753212 | Msa0144300:intron | 40.0% |
| ! | AAATCTAGGGTATGCTTCTC+CGG | - | chr1_4:3753206-3753225 | Msa0144300:intron | 40.0% |
| GTTAGCAAACAGCAAGCAAA+AGG | + | chr1_4:3753324-3753343 | None:intergenic | 40.0% | |
| AGGAAAAACATGCAAGAGAC+CGG | + | chr1_4:3753348-3753367 | None:intergenic | 40.0% | |
| !! | TCCTGTTTGCTATACTGCAA+AGG | - | chr1_4:3753364-3753383 | Msa0144300:intron | 40.0% |
| !! | CCTGTTTGCTATACTGCAAA+GGG | - | chr1_4:3753365-3753384 | Msa0144300:intron | 40.0% |
| !! | AATTCAAAAAGCACCCACCA+GGG | - | chr1_4:3753471-3753490 | Msa0144300:intron | 40.0% |
| AAAACTAATTACCCCCTGGT+GGG | + | chr1_4:3753487-3753506 | None:intergenic | 40.0% | |
| TAAAACTAATTACCCCCTGG+TGG | + | chr1_4:3753488-3753507 | None:intergenic | 40.0% | |
| ! | ATTTTTCGCACTAGAGACTG+AGG | + | chr1_4:3753577-3753596 | None:intergenic | 40.0% |
| ACATTCAAACCGAGAGAACA+AGG | + | chr1_4:3753627-3753646 | None:intergenic | 40.0% | |
| CACAAACAAACAGTGCTGTA+GGG | + | chr1_4:3753718-3753737 | None:intergenic | 40.0% | |
| TCACAAACAAACAGTGCTGT+AGG | + | chr1_4:3753719-3753738 | None:intergenic | 40.0% | |
| !! | GAAGGGTGTTAAATGGAGTT+TGG | + | chr1_4:3753795-3753814 | None:intergenic | 40.0% |
| GTGTTGAGTCAAATGACCTT+AGG | + | chr1_4:3753924-3753943 | None:intergenic | 40.0% | |
| CAAACTATAGAGGGTAACCT+TGG | - | chr1_4:3753973-3753992 | Msa0144300:intron | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | - | chr1_4:3754009-3754028 | Msa0144300:intron | 40.0% | |
| ! | TTACACAAGAGGTTGTTTCC+AGG | + | chr1_4:3754049-3754068 | None:intergenic | 40.0% |
| CGTACAATACACCAAATGGT+GGG | - | chr1_4:3754085-3754104 | Msa0144300:intron | 40.0% | |
| ATTGAGGATGATACCTTGGA+CGG | + | chr1_4:3754543-3754562 | None:intergenic | 40.0% | |
| CTTTGCCTGCTTCTTTATTG+AGG | + | chr1_4:3754559-3754578 | None:intergenic | 40.0% | |
| ACTGTAGTTACCCGAAACAA+TGG | - | chr1_4:3754679-3754698 | Msa0144300:intron | 40.0% | |
| ! | TGTAATGGGACCATTGTTTC+GGG | + | chr1_4:3754692-3754711 | None:intergenic | 40.0% |
| AGGCTCAAAACTACAAATGG+TGG | + | chr1_4:3754786-3754805 | None:intergenic | 40.0% | |
| ATGGCATTGCATACTGAAGT+CGG | - | chr1_4:3754944-3754963 | Msa0144300:CDS | 40.0% | |
| CAGAGAATTACAGCGAAATC+TGG | - | chr1_4:3755048-3755067 | Msa0144300:CDS | 40.0% | |
| TACAGCGAAATCTGGAGATA+TGG | - | chr1_4:3755056-3755075 | Msa0144300:CDS | 40.0% | |
| ! | ATATGGTTGGCCAGAATCAT+TGG | - | chr1_4:3755073-3755092 | Msa0144300:CDS | 40.0% |
| !! | CTTGTTAGGTTGAGAAAGTG+AGG | + | chr1_4:3755201-3755220 | None:intergenic | 40.0% |
| TGCGTTGAGAATGTTGTCGA+AGG | + | chr1_4:3751848-3751867 | None:intergenic | 45.0% | |
| AAGCTCTTCTTCAGCACGAA+TGG | + | chr1_4:3751871-3751890 | None:intergenic | 45.0% | |
| TCTGTGTGAAGCGAAGATCT+CGG | + | chr1_4:3751946-3751965 | None:intergenic | 45.0% | |
| TCGCTTCACACAGAAACTCA+TGG | - | chr1_4:3751952-3751971 | Msa0144300:CDS | 45.0% | |
| TTCAAGAAGGTTTCAGGAGG+AGG | - | chr1_4:3752121-3752140 | Msa0144300:CDS | 45.0% | |
| GGGCTGAGAAAGCTTCATTA+TGG | - | chr1_4:3752297-3752316 | Msa0144300:intron | 45.0% | |
| CAAACACATGCTGTGAAGTC+CGG | - | chr1_4:3752576-3752595 | Msa0144300:CDS | 45.0% | |
| GCACCAACACCTTCAATCAA+AGG | + | chr1_4:3752704-3752723 | None:intergenic | 45.0% | |
| ATGTGTCCGACACTAGACAT+TGG | - | chr1_4:3752803-3752822 | Msa0144300:intron | 45.0% | |
| AAGCTGCGTGGTAAAAGAAC+AGG | + | chr1_4:3752903-3752922 | None:intergenic | 45.0% | |
| GGAGATTCCTTTCTTGGGTA+CGG | - | chr1_4:3752953-3752972 | Msa0144300:intron | 45.0% | |
| GAATTAAACATGGCCTCCCA+AGG | + | chr1_4:3753026-3753045 | None:intergenic | 45.0% | |
| ! | AATCTAGGGTATGCTTCTCC+GGG | - | chr1_4:3753207-3753226 | Msa0144300:intron | 45.0% |
| !! | TGCTTGCTGTTTGCTAACAC+CGG | - | chr1_4:3753326-3753345 | Msa0144300:intron | 45.0% |
| CCCTTTGCAGTATAGCAAAC+AGG | + | chr1_4:3753368-3753387 | None:intergenic | 45.0% | |
| ! | TATACTGCAAAGGGCATGTG+TGG | - | chr1_4:3753374-3753393 | Msa0144300:intron | 45.0% |
| !! | CAATTCAAAAAGCACCCACC+AGG | - | chr1_4:3753470-3753489 | Msa0144300:intron | 45.0% |
| !! | ATTCAAAAAGCACCCACCAG+GGG | - | chr1_4:3753472-3753491 | Msa0144300:intron | 45.0% |
| !! | GTGCTGTAGGGAAAGTATCA+CGG | + | chr1_4:3753706-3753725 | None:intergenic | 45.0% |
| GTCATGTGACTGTAAGGTCA+CGG | - | chr1_4:3754015-3754034 | Msa0144300:intron | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | - | chr1_4:3754016-3754035 | Msa0144300:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr1_4:3754081-3754100 | Msa0144300:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr1_4:3754084-3754103 | Msa0144300:intron | 45.0% | |
| AATCACCATCTACCTTCCAG+GGG | + | chr1_4:3754446-3754465 | None:intergenic | 45.0% | |
| GAATCACCATCTACCTTCCA+GGG | + | chr1_4:3754447-3754466 | None:intergenic | 45.0% | |
| TGAATCACCATCTACCTTCC+AGG | + | chr1_4:3754448-3754467 | None:intergenic | 45.0% | |
| AAGGTAGATGGTGATTCAGC+TGG | - | chr1_4:3754450-3754469 | Msa0144300:intron | 45.0% | |
| ATGACAGGAAAAGATGTGCC+AGG | + | chr1_4:3754757-3754776 | None:intergenic | 45.0% | |
| ! | TGGCACATCTTTTCCTGTCA+TGG | - | chr1_4:3754756-3754775 | Msa0144300:CDS | 45.0% |
| ! | GGCACATCTTTTCCTGTCAT+GGG | - | chr1_4:3754757-3754776 | Msa0144300:CDS | 45.0% |
| CGAAATTCTGAACTGAGGGA+GGG | + | chr1_4:3754848-3754867 | None:intergenic | 45.0% | |
| CCTCCCTCAGTTCAGAATTT+CGG | - | chr1_4:3754846-3754865 | Msa0144300:CDS | 45.0% | |
| GGTCCGAAATTCTGAACTGA+GGG | + | chr1_4:3754852-3754871 | None:intergenic | 45.0% | |
| TGGCATTGCATACTGAAGTC+GGG | - | chr1_4:3754945-3754964 | Msa0144300:CDS | 45.0% | |
| AGTCGGGAAGACTCATTACA+AGG | - | chr1_4:3754961-3754980 | Msa0144300:CDS | 45.0% | |
| ACTAACGACAAGACGGTCTA+TGG | - | chr1_4:3755006-3755025 | Msa0144300:CDS | 45.0% | |
| GACGGTCTATGGACTCAATT+CGG | - | chr1_4:3755017-3755036 | Msa0144300:CDS | 45.0% | |
| GCGAAATCTGGAGATATGGT+TGG | - | chr1_4:3755060-3755079 | Msa0144300:CDS | 45.0% | |
| AGAATCATTGGCGATCTCGA+GGG | - | chr1_4:3755085-3755104 | Msa0144300:CDS | 45.0% | |
| !! | ACGAGGAGAAGCGTCTCTTA+CGG | - | chr1_4:3751979-3751998 | Msa0144300:CDS | 50.0% |
| !! | AGCGGTGGTGGAAGATTCTA+AGG | - | chr1_4:3752040-3752059 | Msa0144300:CDS | 50.0% |
| AAGAAGGTTTCAGGAGGAGG+AGG | - | chr1_4:3752124-3752143 | Msa0144300:CDS | 50.0% | |
| AGAAGGTTTCAGGAGGAGGA+GGG | - | chr1_4:3752125-3752144 | Msa0144300:CDS | 50.0% | |
| TTTCAGGAGGAGGAGGGATT+GGG | - | chr1_4:3752131-3752150 | Msa0144300:CDS | 50.0% | |
| GGGAGTAGGGAAGATATGGT+GGG | - | chr1_4:3752161-3752180 | Msa0144300:CDS | 50.0% | |
| GGAGTAGGGAAGATATGGTG+GGG | - | chr1_4:3752162-3752181 | Msa0144300:CDS | 50.0% | |
| TCATGTCTCGTGTCTGTCAC+CGG | + | chr1_4:3752598-3752617 | None:intergenic | 50.0% | |
| TGTCCGACACTAGACATTGG+TGG | - | chr1_4:3752806-3752825 | Msa0144300:intron | 50.0% | |
| GTCCGACACTAGACATTGGT+GGG | - | chr1_4:3752807-3752826 | Msa0144300:intron | 50.0% | |
| TGCCCACCAATGTCTAGTGT+CGG | + | chr1_4:3752812-3752831 | None:intergenic | 50.0% | |
| GGCAGAGACAGTAAACAACC+CGG | + | chr1_4:3753228-3753247 | None:intergenic | 50.0% | |
| GGGTTGTTTACTGTCTCTGC+CGG | - | chr1_4:3753227-3753246 | Msa0144300:intron | 50.0% | |
| GCAAGTTGCAACCATGTCAC+CGG | + | chr1_4:3753249-3753268 | None:intergenic | 50.0% | |
| !! | TTCAAAAAGCACCCACCAGG+GGG | - | chr1_4:3753473-3753492 | Msa0144300:intron | 50.0% |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr1_4:3753993-3754012 | None:intergenic | 50.0% | |
| GCATTTCTGATAGGGCAACC+CGG | + | chr1_4:3754151-3754170 | None:intergenic | 50.0% | |
| ATCACCATCTACCTTCCAGG+GGG | + | chr1_4:3754445-3754464 | None:intergenic | 50.0% | |
| TGGTAAGGATGTTCCGTCCA+AGG | - | chr1_4:3754527-3754546 | Msa0144300:intron | 50.0% | |
| ! | AAATGGTGGTGTCCCATGAC+AGG | + | chr1_4:3754772-3754791 | None:intergenic | 50.0% |
| CCGAAATTCTGAACTGAGGG+AGG | + | chr1_4:3754849-3754868 | None:intergenic | 50.0% | |
| GGGTCCGAAATTCTGAACTG+AGG | + | chr1_4:3754853-3754872 | None:intergenic | 50.0% | |
| CAGATGCATCCTGTTGAAGC+CGG | + | chr1_4:3754907-3754926 | None:intergenic | 50.0% | |
| CTCGAGATCGCCAATGATTC+TGG | + | chr1_4:3755086-3755105 | None:intergenic | 50.0% | |
| CAGAATCATTGGCGATCTCG+AGG | - | chr1_4:3755084-3755103 | Msa0144300:CDS | 50.0% | |
| GAATCATTGGCGATCTCGAG+GGG | - | chr1_4:3755086-3755105 | Msa0144300:CDS | 50.0% | |
| GGAGATCGTGAGGTTGAGAG+CGG | - | chr1_4:3752022-3752041 | Msa0144300:CDS | 55.0% | |
| !! | GGAAGATTCTAAGGCGCGTG+TGG | - | chr1_4:3752049-3752068 | Msa0144300:CDS | 55.0% |
| !! | AGATTCTAAGGCGCGTGTGG+AGG | - | chr1_4:3752052-3752071 | Msa0144300:CDS | 55.0% |
| TAAGGCGCGTGTGGAGGATT+TGG | - | chr1_4:3752058-3752077 | Msa0144300:CDS | 55.0% | |
| ! | TGTGGAGGATTTGGAGCGTG+AGG | - | chr1_4:3752067-3752086 | Msa0144300:CDS | 55.0% |
| GTTTCAGGAGGAGGAGGGAT+TGG | - | chr1_4:3752130-3752149 | Msa0144300:CDS | 55.0% | |
| GTGCGGGAGTAGGGAAGATA+TGG | - | chr1_4:3752157-3752176 | Msa0144300:CDS | 55.0% | |
| CGGGAGTAGGGAAGATATGG+TGG | - | chr1_4:3752160-3752179 | Msa0144300:CDS | 55.0% | |
| TTGTGGCAACTGGGGTCCTT+GGG | - | chr1_4:3753007-3753026 | Msa0144300:intron | 55.0% | |
| TACTGTCTCTGCCGGTGACA+TGG | - | chr1_4:3753235-3753254 | Msa0144300:intron | 55.0% | |
| ! | CTGCAAAGGGCATGTGTGGA+TGG | - | chr1_4:3753378-3753397 | Msa0144300:intron | 55.0% |
| GGGCATGTGTGGATGGAACT+AGG | - | chr1_4:3753385-3753404 | Msa0144300:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr1_4:3754028-3754047 | Msa0144300:intron | 55.0% | |
| !! | GGAAGCATTCCGGCTTCAAC+AGG | - | chr1_4:3754895-3754914 | Msa0144300:CDS | 55.0% |
| ATCTCGAGGGGATTCTGGCA+AGG | - | chr1_4:3755098-3755117 | Msa0144300:CDS | 55.0% | |
| TCTCGAGGGGATTCTGGCAA+GGG | - | chr1_4:3755099-3755118 | Msa0144300:CDS | 55.0% | |
| CAGAAACTCATGGCGCGACG+AGG | - | chr1_4:3751962-3751981 | Msa0144300:CDS | 60.0% | |
| GATCGTGAGGTTGAGAGCGG+TGG | - | chr1_4:3752025-3752044 | Msa0144300:CDS | 60.0% | |
| AGGAGGAGGAGGGATTGGGT+GGG | - | chr1_4:3752135-3752154 | Msa0144300:CDS | 60.0% | |
| ATTGGGTGGGTGCGGGAGTA+GGG | - | chr1_4:3752148-3752167 | Msa0144300:CDS | 60.0% | |
| !! | TATGGTGGGGAGCACTGCTG+AGG | - | chr1_4:3752175-3752194 | Msa0144300:CDS | 60.0% |
| GTTGTGGCAACTGGGGTCCT+TGG | - | chr1_4:3753006-3753025 | Msa0144300:intron | 60.0% | |
| GAGGGTAACCTTGGCGCAAC+TGG | - | chr1_4:3753982-3754001 | Msa0144300:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr1_4:3754097-3754116 | Msa0144300:intron | 60.0% |
| CTGAAGCTCCCGCATACGCA+GGG | + | chr1_4:3754124-3754143 | None:intergenic | 60.0% | |
| ACTGAAGCTCCCGCATACGC+AGG | + | chr1_4:3754125-3754144 | None:intergenic | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | - | chr1_4:3754129-3754148 | Msa0144300:intron | 60.0% | |
| GAGTCCCCCTGGAAGGTAGA+TGG | - | chr1_4:3754438-3754457 | Msa0144300:intron | 60.0% | |
| GAACTGAGGGAGGGTTCGCA+CGG | + | chr1_4:3754839-3754858 | None:intergenic | 60.0% | |
| TGGCGATCTCGAGGGGATTC+TGG | - | chr1_4:3755093-3755112 | Msa0144300:CDS | 60.0% | |
| GAGGGGATTCTGGCAAGGGA+CGG | - | chr1_4:3755103-3755122 | Msa0144300:CDS | 60.0% | |
| CCTCACGATCTCCTCCGACG+CGG | + | chr1_4:3752015-3752034 | None:intergenic | 65.0% | |
| CGTGAGGTTGAGAGCGGTGG+TGG | - | chr1_4:3752028-3752047 | Msa0144300:CDS | 65.0% | |
| CAGGAGGAGGAGGGATTGGG+TGG | - | chr1_4:3752134-3752153 | Msa0144300:CDS | 65.0% | |
| GAGGAGGGATTGGGTGGGTG+CGG | - | chr1_4:3752140-3752159 | Msa0144300:CDS | 65.0% | |
| AGGAGGGATTGGGTGGGTGC+GGG | - | chr1_4:3752141-3752160 | Msa0144300:CDS | 65.0% | |
| GATTGGGTGGGTGCGGGAGT+AGG | - | chr1_4:3752147-3752166 | Msa0144300:CDS | 65.0% | |
| TGGCAACTGGGGTCCTTGGG+AGG | - | chr1_4:3753010-3753029 | Msa0144300:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr1_4:3754099-3754118 | None:intergenic | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr1_4:3754112-3754131 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr1_4:3754113-3754132 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr1_4:3754112-3754131 | Msa0144300:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr1_4:3754113-3754132 | Msa0144300:intron | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | - | chr1_4:3754130-3754149 | Msa0144300:intron | 65.0% | |
| CCAGGGGGACTCCCTTCTGA+GGG | + | chr1_4:3754430-3754449 | None:intergenic | 65.0% | |
| TCCAGGGGGACTCCCTTCTG+AGG | + | chr1_4:3754431-3754450 | None:intergenic | 65.0% | |
| CAGAAGGGAGTCCCCCTGGA+AGG | - | chr1_4:3754431-3754450 | Msa0144300:intron | 65.0% | |
| ACGGCGAATCGACGCCGCGT+CGG | - | chr1_4:3751998-3752017 | Msa0144300:CDS | 70.0% | |
| CCGCGTCGGAGGAGATCGTG+AGG | - | chr1_4:3752012-3752031 | Msa0144300:CDS | 70.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | chr1_4:3754114-3754133 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | chr1_4:3754118-3754137 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | chr1_4:3754119-3754138 | None:intergenic | 70.0% | |
| CCCTCAGAAGGGAGTCCCCC+TGG | - | chr1_4:3754427-3754446 | Msa0144300:intron | 70.0% | |
| GCGAATCGACGCCGCGTCGG+AGG | - | chr1_4:3752001-3752020 | Msa0144300:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 3751735 | 3755332 | 3751735 | ID=Msa0144300;Name=Msa0144300 |
| chr1_4 | mRNA | 3751735 | 3755332 | 3751735 | ID=Msa0144300-mRNA-1;Parent=Msa0144300;Name=Msa0144300-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.66|0.5|1|1|1|4|155|395 |
| chr1_4 | exon | 3751735 | 3752240 | 3751735 | ID=Msa0144300-mRNA-1:exon:1493;Parent=Msa0144300-mRNA-1 |
| chr1_4 | exon | 3752441 | 3752633 | 3752441 | ID=Msa0144300-mRNA-1:exon:1492;Parent=Msa0144300-mRNA-1 |
| chr1_4 | exon | 3752724 | 3752779 | 3752724 | ID=Msa0144300-mRNA-1:exon:1491;Parent=Msa0144300-mRNA-1 |
| chr1_4 | exon | 3754745 | 3755332 | 3754745 | ID=Msa0144300-mRNA-1:exon:1490;Parent=Msa0144300-mRNA-1 |
| chr1_4 | CDS | 3754745 | 3755332 | 3754745 | ID=Msa0144300-mRNA-1:cds;Parent=Msa0144300-mRNA-1 |
| chr1_4 | CDS | 3752724 | 3752779 | 3752724 | ID=Msa0144300-mRNA-1:cds;Parent=Msa0144300-mRNA-1 |
| chr1_4 | CDS | 3752441 | 3752633 | 3752441 | ID=Msa0144300-mRNA-1:cds;Parent=Msa0144300-mRNA-1 |
| chr1_4 | CDS | 3751890 | 3752240 | 3751890 | ID=Msa0144300-mRNA-1:cds;Parent=Msa0144300-mRNA-1 |
| chr1_4 | three_prime_UTR | 3751735 | 3751889 | 3751735 | ID=Msa0144300-mRNA-1:three_prime_utr;Parent=Msa0144300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
