AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0731770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0731770 MtrunA17_Chr5g0426281 98.817 676 6 2 1 675 1 675 0.0 1376
Msa0731770 MtrunA17_Chr3g0115931 76.623 693 142 4 1 674 1 692 0.0 1118
Msa0731770 MtrunA17_Chr4g0043121 47.857 420 193 8 74 476 15 425 2.11e-134 402
Msa0731770 MtrunA17_Chr1g0187601 37.409 548 300 10 144 670 89 614 2.12e-118 367
Msa0731770 MtrunA17_Chr1g0167381 37.739 522 285 10 144 648 90 588 4.33e-115 358
Msa0731770 MtrunA17_Chr1g0183721 34.043 611 352 13 72 667 8 582 2.86e-112 350
Msa0731770 MtrunA17_Chr3g0112341 33.517 543 322 12 144 671 151 669 9.88e-104 330
Msa0731770 MtrunA17_Chr7g0246681 33.032 554 323 13 136 671 65 588 7.81e-97 310
Msa0731770 MtrunA17_Chr1g0159741 35.104 527 312 14 151 669 154 658 1.38e-95 308
Msa0731770 MtrunA17_Chr5g0435751 31.911 539 308 11 144 667 123 617 4.01e-95 306
Msa0731770 MtrunA17_Chr1g0203741 31.811 635 348 21 81 670 23 617 3.69e-94 304
Msa0731770 MtrunA17_Chr8g0350351 32.044 543 325 10 144 670 86 600 2.06e-93 301
Msa0731770 MtrunA17_Chr8g0350391 32.155 566 315 16 140 670 99 630 5.20e-93 301
Msa0731770 MtrunA17_Chr1g0171781 34.854 548 304 13 146 670 86 603 5.88e-93 300
Msa0731770 MtrunA17_Chr6g0472571 32.973 555 311 17 149 674 108 630 8.64e-93 300
Msa0731770 MtrunA17_Chr5g0437501 32.197 528 295 14 169 675 125 610 8.94e-92 297
Msa0731770 MtrunA17_Chr8g0388881 31.551 561 322 17 144 674 96 624 9.45e-92 298
Msa0731770 MtrunA17_Chr3g0130381 33.100 571 311 18 132 671 247 777 7.40e-91 299
Msa0731770 MtrunA17_Chr8g0369481 31.365 542 320 13 149 667 73 585 1.22e-90 294
Msa0731770 MtrunA17_Chr5g0409411 32.541 547 315 14 149 671 75 591 1.35e-90 293
Msa0731770 MtrunA17_Chr3g0125511 33.273 550 293 17 156 671 234 743 2.89e-90 297
Msa0731770 MtrunA17_Chr4g0043131 66.304 184 60 1 489 672 4 185 4.52e-90 278
Msa0731770 MtrunA17_Chr3g0113981 31.881 505 297 12 175 671 204 669 3.62e-87 286
Msa0731770 MtrunA17_Chr4g0055031 31.327 565 321 19 136 670 76 603 5.17e-87 285
Msa0731770 MtrunA17_Chr7g0214551 32.246 552 311 14 140 660 37 556 1.87e-86 282
Msa0731770 MtrunA17_Chr7g0246701 32.246 552 314 18 149 670 104 625 2.08e-86 284
Msa0731770 MtrunA17_Chr8g0384431 32.830 530 298 15 151 656 301 796 1.09e-84 283
Msa0731770 MtrunA17_Chr5g0416991 30.212 566 332 16 132 670 70 599 7.50e-84 276
Msa0731770 MtrunA17_Chr8g0361791 30.212 566 333 14 132 670 70 600 8.99e-84 276
Msa0731770 MtrunA17_Chr3g0092501 30.505 554 319 17 144 670 83 597 2.97e-82 272
Msa0731770 MtrunA17_Chr8g0372471 32.108 517 302 13 169 671 410 891 1.56e-80 274
Msa0731770 MtrunA17_Chr1g0155141 31.047 554 307 19 142 671 198 700 1.03e-77 262
Msa0731770 MtrunA17_Chr5g0404761 30.897 301 168 9 388 675 4 277 1.07e-40 150
Msa0731770 MtrunA17_Chr5g0404771 36.406 217 127 5 169 383 353 560 1.38e-36 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0731770 AT1G78240.1 67.435 694 197 8 1 675 1 684 0.0 954
Msa0731770 AT1G78240.2 67.435 694 197 8 1 675 1 684 0.0 954
Msa0731770 AT1G13860.4 52.053 609 276 8 70 672 5 603 0.0 660
Msa0731770 AT1G13860.3 52.053 609 276 8 70 672 5 603 0.0 660
Msa0731770 AT1G13860.1 52.053 609 276 8 70 672 5 603 0.0 660
Msa0731770 AT1G13860.5 52.053 609 276 8 70 672 5 603 0.0 660
Msa0731770 AT2G03480.1 51.216 617 266 10 70 672 11 606 0.0 633
Msa0731770 AT2G03480.2 50.405 617 260 9 70 672 11 595 0.0 622
Msa0731770 AT1G13860.2 56.608 454 185 6 224 672 1 447 0.0 548
Msa0731770 AT2G03480.3 47.981 421 199 8 70 476 11 425 1.02e-127 385
Msa0731770 AT1G04430.1 36.738 607 330 12 84 660 10 592 5.67e-116 361
Msa0731770 AT1G04430.3 36.738 607 330 12 84 660 10 592 5.67e-116 361
Msa0731770 AT1G04430.2 36.738 607 330 12 84 660 10 592 5.67e-116 361
Msa0731770 AT3G23300.2 36.581 544 299 11 149 670 82 601 1.31e-114 357
Msa0731770 AT3G23300.1 36.581 544 299 11 149 670 82 601 1.31e-114 357
Msa0731770 AT5G14430.1 36.625 557 303 11 144 675 78 609 1.22e-111 349
Msa0731770 AT4G14360.1 36.822 516 288 9 149 648 79 572 6.14e-111 347
Msa0731770 AT4G14360.2 36.822 516 288 9 149 648 79 572 6.14e-111 347
Msa0731770 AT5G14430.2 36.266 557 305 11 144 675 78 609 3.46e-110 346
Msa0731770 AT5G06050.1 35.348 546 304 13 144 669 147 663 1.48e-108 343
Msa0731770 AT1G77260.1 34.254 543 308 11 144 667 141 653 3.42e-102 326
Msa0731770 AT2G39750.1 32.182 550 334 12 137 671 168 693 2.46e-101 325
Msa0731770 AT5G04060.1 33.966 527 308 11 153 670 102 597 1.32e-97 312
Msa0731770 AT3G10200.1 35.209 551 297 15 146 670 72 588 1.36e-97 312
Msa0731770 AT4G19120.1 32.982 570 318 16 127 670 59 590 4.55e-96 308
Msa0731770 AT4G19120.2 32.982 570 318 16 127 670 59 590 4.55e-96 308
Msa0731770 AT1G31850.1 32.844 545 310 16 149 667 79 593 6.98e-96 308
Msa0731770 AT1G31850.2 32.844 545 310 16 149 667 79 593 6.98e-96 308
Msa0731770 AT1G31850.4 32.844 545 310 16 149 667 79 593 6.98e-96 308
Msa0731770 AT1G31850.3 32.844 545 310 16 149 667 79 593 6.98e-96 308
Msa0731770 AT4G00740.1 32.410 614 332 16 89 671 33 594 9.23e-95 305
Msa0731770 AT4G00740.2 32.410 614 332 16 89 671 33 594 9.23e-95 305
Msa0731770 AT1G33170.1 32.258 558 316 17 144 670 108 634 1.40e-92 300
Msa0731770 AT4G10440.1 31.598 557 320 16 144 670 91 616 5.71e-92 298
Msa0731770 AT2G43200.2 34.457 534 295 15 149 658 94 596 7.19e-91 295
Msa0731770 AT2G43200.1 34.457 534 295 15 149 658 94 596 7.19e-91 295
Msa0731770 AT4G00750.1 32.865 569 314 19 141 674 91 626 1.08e-90 295
Msa0731770 AT2G45750.1 33.273 550 297 15 148 661 89 604 1.53e-90 295
Msa0731770 AT1G26850.2 31.306 559 326 14 140 670 80 608 7.03e-88 287
Msa0731770 AT1G26850.1 31.306 559 326 14 140 670 80 608 7.03e-88 287
Msa0731770 AT2G34300.2 32.061 524 296 14 169 671 274 758 7.11e-88 291
Msa0731770 AT2G34300.3 32.061 524 296 14 169 671 274 758 7.11e-88 291
Msa0731770 AT2G34300.1 32.061 524 296 14 169 671 274 758 7.11e-88 291
Msa0731770 AT2G40280.1 30.249 562 335 17 123 671 65 582 1.50e-87 286
Msa0731770 AT5G64030.1 32.051 546 314 16 155 675 308 821 1.90e-87 291
Msa0731770 AT3G56080.1 31.471 537 292 15 143 651 107 595 1.18e-86 284
Msa0731770 AT1G29470.1 33.333 519 296 14 169 671 274 758 1.75e-86 288
Msa0731770 AT1G29470.2 33.333 519 296 14 169 671 274 758 1.75e-86 288
Msa0731770 AT3G10200.2 35.130 501 268 14 146 623 72 538 2.31e-86 283
Msa0731770 AT4G18030.1 31.341 552 319 16 146 670 85 603 2.42e-86 283
Msa0731770 AT3G51070.1 32.051 546 306 15 155 671 381 890 2.79e-85 287
Msa0731770 AT1G19430.1 31.481 540 300 17 155 671 231 723 1.12e-75 257
Msa0731770 AT1G19430.3 31.481 540 300 17 155 671 231 723 1.12e-75 257
Msa0731770 AT3G56080.2 31.612 484 258 13 143 598 107 545 5.06e-75 251
Msa0731770 AT3G51070.2 32.770 473 258 13 155 598 381 822 2.45e-74 256
Msa0731770 AT4G19120.3 30.635 457 265 13 146 577 70 499 2.29e-66 227
Msa0731770 AT1G26850.3 29.025 441 261 11 140 555 80 493 2.51e-54 194
Msa0731770 AT1G19430.2 29.440 411 216 16 155 537 231 595 2.74e-38 150

Find 193 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTGGAAAAGATGTTATT+TGG 0.156678 5_1:-43239604 Msa0731770:CDS
TTTATGATAATTATGGAAAT+TGG 0.166001 5_1:+43235911 None:intergenic
TAAACACAATTATTTATTAT+TGG 0.170520 5_1:-43235711 Msa0731770:three_prime_UTR
ACTCTAGCTGATTCTATTAA+AGG 0.186941 5_1:+43236094 None:intergenic
GCAGAACTTTATGATAATTA+TGG 0.199837 5_1:+43235904 None:intergenic
ATAAATAATTCTATGATATA+GGG 0.207007 5_1:+43235621 None:intergenic
CCTAAACTCAAATACCTTTC+TGG 0.213244 5_1:+43238433 None:intergenic
GTTTCTTGAAGAAAGGTTTC+TGG 0.232166 5_1:+43235996 None:intergenic
GCACAAGAGGTTCTTTCTTC+TGG 0.244322 5_1:-43239560 Msa0731770:CDS
TGGATATTGGTGAGATTTCT+AGG 0.258788 5_1:-43239796 Msa0731770:CDS
CTGGAGCTGGATTCTCAAAA+AGG 0.266365 5_1:-43240355 Msa0731770:five_prime_UTR
AATAAATAATTCTATGATAT+AGG 0.269595 5_1:+43235620 None:intergenic
AATTGTTTAGTTTGATCTAA+TGG 0.273439 5_1:+43241133 None:intergenic
CCTCTACATCGAGGTGTTTC+CGG 0.278716 5_1:-43240178 Msa0731770:CDS
AAACACAATTATTTATTATT+GGG 0.280121 5_1:-43235710 Msa0731770:three_prime_UTR
CTCTTGCTTCCCATTTCAGC+TGG 0.280333 5_1:+43236062 None:intergenic
TATTATGGTATAGTTTCTTT+AGG 0.298118 5_1:+43235949 None:intergenic
ATCAACTTAAAACGGCTTCT+TGG 0.300302 5_1:+43239968 None:intergenic
GACCGGGTGGATACTTTGTT+TGG 0.300878 5_1:-43238286 Msa0731770:CDS
AGCAAAACACAAGAGGTTAA+TGG 0.309048 5_1:+43240833 None:intergenic
TCCTCGTCACCGGGCCTCTT+CGG 0.310023 5_1:+43237660 None:intergenic
AGAGGAACTTTGTAATTAAC+TGG 0.318130 5_1:+43239635 None:intergenic
AGAAAGGTTTCTGGCATATC+AGG 0.322309 5_1:+43236005 None:intergenic
AAGCAGCAGTGCAAAATTAT+TGG 0.326097 5_1:-43237716 Msa0731770:CDS
GTTTCAGATTTGTTGGATAT+TGG 0.327113 5_1:-43239809 Msa0731770:CDS
GAAACTTGTTTCAGATTTGT+TGG 0.328549 5_1:-43239816 Msa0731770:CDS
AAATGAATATATGTATATTA+TGG 0.332547 5_1:+43235934 None:intergenic
TCTTAGCAGCCCAGCTGAAA+TGG 0.337346 5_1:-43236072 Msa0731770:CDS
ATTACAAAGTTCCTCTTAGA+TGG 0.341609 5_1:-43239628 Msa0731770:CDS
AGATAGTTAGGTCCAGTTCT+TGG 0.345037 5_1:+43237522 None:intergenic
TACTGGAAAAGATGTTATTT+GGG 0.346347 5_1:-43239603 Msa0731770:CDS
TCAGCCTCTCATATGTTTGA+TGG 0.353415 5_1:-43239279 Msa0731770:CDS
CATCAGATTGCTGAAATGAT+TGG 0.365226 5_1:-43239240 Msa0731770:CDS
CTTGGTGAGCCAACACTGAT+TGG 0.369399 5_1:+43239986 None:intergenic
TAGACTTGTGATTCTTCAAC+TGG 0.369806 5_1:-43240374 Msa0731770:five_prime_UTR
GGTTGTGGCTATGGTAGCTT+TGG 0.380939 5_1:-43238645 Msa0731770:CDS
TGAGCAGAGTCAAAATTGTT+TGG 0.393888 5_1:-43239666 Msa0731770:CDS
ATCTGTTCATTGAAATTGAC+AGG 0.398613 5_1:-43236902 Msa0731770:CDS
GATAGTTAGGTCCAGTTCTT+GGG 0.401757 5_1:+43237523 None:intergenic
AGTAAACAACACTCTTGTAT+TGG 0.408596 5_1:-43240301 Msa0731770:five_prime_UTR
AAGGAGACCTCAATGCTAAA+GGG 0.408924 5_1:+43240053 None:intergenic
TGGATCAAGGGAAGATAGTT+AGG 0.412196 5_1:+43237510 None:intergenic
TCAAAAGACAGAGATGGATA+TGG 0.414142 5_1:+43238492 None:intergenic
TACATAACAATTACCATGTA+TGG 0.417975 5_1:+43237856 None:intergenic
GTGCTTAGGCAGTTAGGCTT+AGG 0.419622 5_1:+43241227 None:intergenic
GTGCAAGATGTGGCATTGAT+TGG 0.420971 5_1:-43238458 Msa0731770:CDS
TGCTTCAAGGTGGAAAGAAT+TGG 0.422058 5_1:-43239771 Msa0731770:CDS
GGATGATCAGAAAATATTAC+AGG 0.422300 5_1:+43237681 None:intergenic
ATGAACGTGGTCCCAAGAAC+TGG 0.422464 5_1:-43237534 Msa0731770:CDS
TGTGATTCTTCAACTGGAGC+TGG 0.427549 5_1:-43240368 Msa0731770:five_prime_UTR
GGATATTGGTGAGATTTCTA+GGG 0.429174 5_1:-43239795 Msa0731770:CDS
GGCCGACAAAACCTCGGTCC+TGG 0.432238 5_1:+43237490 None:intergenic
ATTGCATGTTTCTTGAAGAA+AGG 0.436409 5_1:+43235989 None:intergenic
CGGAGAAGGGTCCTCGTCAC+CGG 0.441507 5_1:+43237650 None:intergenic
GGAATCTTGTTCTCCTGAGT+TGG 0.443168 5_1:-43239750 Msa0731770:CDS
AAGCAGCTGACAAAGAATAT+TGG 0.444728 5_1:-43235773 Msa0731770:three_prime_UTR
TATGACTTGGTGCATGCAGC+AGG 0.446091 5_1:-43236972 Msa0731770:CDS
GTCGTGTTTACCATGGTTAT+AGG 0.449066 5_1:-43239850 Msa0731770:CDS
ACATTTCTGAACATGTTGTA+AGG 0.452439 5_1:+43237627 None:intergenic
GTTCCTCTTAGATGGCCTAC+TGG 0.452619 5_1:-43239620 Msa0731770:CDS
AAGCATCAAACAAAACTACT+AGG 0.457084 5_1:-43240779 Msa0731770:intron
GAGTCCTCACCAAGTTCATC+AGG 0.457244 5_1:+43237750 None:intergenic
CTTAGCAGCCCAGCTGAAAT+GGG 0.459246 5_1:-43236071 Msa0731770:CDS
TAAGTGGCTGGGAAAATTCA+AGG 0.460048 5_1:+43236940 None:intergenic
GCATGGTGCACCTAAGTGGC+TGG 0.460368 5_1:+43236928 None:intergenic
AAAACCTCGGTCCTGGATCA+AGG 0.462140 5_1:+43237497 None:intergenic
TGCTGCATGCACCAAGTCAT+AGG 0.464175 5_1:+43236974 None:intergenic
TAAAGTACCAATCATGCAAA+AGG 0.465452 5_1:+43237469 None:intergenic
GTCGAATGATTAACGTGCAT+TGG 0.469272 5_1:+43240899 None:intergenic
CAGACACTGTCTGCTCGCTT+CGG 0.470208 5_1:+43241042 None:intergenic
ATACAAAGTGAGGATTGAAA+AGG 0.474509 5_1:-43235880 Msa0731770:three_prime_UTR
TTCAATTGAAAGCCAGCGGC+GGG 0.475046 5_1:+43237928 None:intergenic
AGGCTTAGGATAAGAGTGAA+TGG 0.475758 5_1:+43241241 None:intergenic
TCTTGCTTCCCATTTCAGCT+GGG 0.475890 5_1:+43236063 None:intergenic
AAAACATCATCAACTTAAAA+CGG 0.476140 5_1:+43239960 None:intergenic
CTAGACATAGGTTGTGGCTA+TGG 0.482030 5_1:-43238654 Msa0731770:CDS
CCGATGGAAATGAGTTTGAA+AGG 0.483849 5_1:-43239700 Msa0731770:CDS
GACATGAATGCTAACTTTGG+TGG 0.484582 5_1:-43237600 Msa0731770:CDS
TTTCCAGGAAGAAAGGTTCT+CGG 0.487034 5_1:-43238027 Msa0731770:intron
AAAGGAGACCTCAATGCTAA+AGG 0.488766 5_1:+43240052 None:intergenic
GTGAAAGAAGCAATCATAGC+AGG 0.489787 5_1:+43238528 None:intergenic
ACTTTACCGAAAATCTGTGC+TGG 0.491547 5_1:-43238202 Msa0731770:CDS
GCATCTGATCCAATCAGTGT+TGG 0.492382 5_1:-43239995 Msa0731770:CDS
AGATTTCTAGGGGTGCTTCA+AGG 0.496300 5_1:-43239784 Msa0731770:CDS
TCTCGGCCCCTGTGTGGTAG+AGG 0.498322 5_1:-43238010 Msa0731770:CDS
TAAATAATTCTATGATATAG+GGG 0.498850 5_1:+43235622 None:intergenic
CCTTGCTTCAATGTTTCCGA+TGG 0.500173 5_1:-43239716 Msa0731770:CDS
TGCAGCCGTAAGGCGTGCAT+AGG 0.500466 5_1:-43235814 Msa0731770:three_prime_UTR
CTTGAAGTCTCCTATAACCA+TGG 0.505745 5_1:+43239840 None:intergenic
TGCAAGATGTGGCATTGATT+GGG 0.507894 5_1:-43238457 Msa0731770:CDS
TGCACCAAGTCATAGGTTCT+CGG 0.510253 5_1:+43236981 None:intergenic
TCTGAAAACAACAACTTCAA+AGG 0.510267 5_1:+43240034 None:intergenic
GCACCAAGTCATAGGTTCTC+GGG 0.511240 5_1:+43236982 None:intergenic
AACATGTTGTAAGGCGGAGA+AGG 0.511703 5_1:+43237636 None:intergenic
AAAAGAATTGTTATGCATCA+AGG 0.511902 5_1:-43238130 Msa0731770:intron
ATCACACCCCTTTAGCATTG+AGG 0.514349 5_1:-43240060 Msa0731770:CDS
ATGACCCTATGCACGCCTTA+CGG 0.516248 5_1:+43235809 None:intergenic
ATTGCAAACTATGAGCCTTC+TGG 0.516898 5_1:-43238585 Msa0731770:CDS
TCTGATCATCCGAAGAGGCC+CGG 0.518115 5_1:-43237669 Msa0731770:CDS
CCTTTCAAACTCATTTCCAT+CGG 0.521679 5_1:+43239700 None:intergenic
TGCACGCCTTACGGCTGCAC+AGG 0.523599 5_1:+43235818 None:intergenic
AGCATCAAACAAAACTACTA+GGG 0.523668 5_1:-43240778 Msa0731770:intron
GCTTCTCCTGTGCAGCCGTA+AGG 0.525312 5_1:-43235824 Msa0731770:three_prime_UTR
CAATTGCAGGATGATGATGT+TGG 0.529476 5_1:-43239325 Msa0731770:intron
TCAAAATTTGACTGTCAAAG+AGG 0.532274 5_1:+43238616 None:intergenic
GAGGAACACAGACCCGCCGC+TGG 0.534244 5_1:-43237940 Msa0731770:CDS
TTGGTGAGGACTCTGACAGC+TGG 0.536321 5_1:-43237740 Msa0731770:CDS
GAATCTTCCTTCATACAAGC+TGG 0.538007 5_1:-43239207 Msa0731770:CDS
TACAAAGTGAGGATTGAAAA+GGG 0.538274 5_1:-43235879 Msa0731770:three_prime_UTR
AAGAATGAGTTAGCCATACA+TGG 0.539849 5_1:-43237869 Msa0731770:intron
GGATTGCTGCCTGATGAACT+TGG 0.541826 5_1:-43237759 Msa0731770:CDS
GCAGCCGTAAGGCGTGCATA+GGG 0.545092 5_1:-43235813 Msa0731770:three_prime_UTR
AAAACATCAATGATGATACA+TGG 0.546896 5_1:-43240141 Msa0731770:CDS
CAGAAAATATTACAGGCGAC+AGG 0.549480 5_1:+43237688 None:intergenic
AATTTGTCATCTTCGTCAAG+AGG 0.549850 5_1:-43239872 Msa0731770:CDS
TAACTATCTTCCCTTGATCC+AGG 0.552006 5_1:-43237508 Msa0731770:CDS
TGTGTTGAAAGAGTATGTCT+AGG 0.552077 5_1:-43240201 Msa0731770:exon
CATCGAGACCTCTACCACAC+AGG 0.553386 5_1:+43238002 None:intergenic
TTCTTTGTCAGCTGCTTGTG+TGG 0.553823 5_1:+43235779 None:intergenic
TTTCCAGTAGGCCATCTAAG+AGG 0.554429 5_1:+43239617 None:intergenic
CTTTACCGAAAATCTGTGCT+GGG 0.556623 5_1:-43238201 Msa0731770:CDS
CATATGAGAGGCTGAACGAA+AGG 0.563007 5_1:+43239287 None:intergenic
TCCGAAGAGGCCCGGTGACG+AGG 0.564321 5_1:-43237661 Msa0731770:CDS
TTGTTCAAATTAGCCCGAGA+AGG 0.564574 5_1:+43237890 None:intergenic
TTAGACATGAATGCTAACTT+TGG 0.569291 5_1:-43237603 Msa0731770:CDS
GGAGAAGGGTCCTCGTCACC+GGG 0.572769 5_1:+43237651 None:intergenic
AAACCTCGGTCCTGGATCAA+GGG 0.573765 5_1:+43237498 None:intergenic
TCATAGGTTCTCGGGTATGT+CGG 0.578308 5_1:+43236990 None:intergenic
TTCAATGAACAGATCAAGCA+TGG 0.580708 5_1:+43236911 None:intergenic
CTTGCAAAGCAAAACACAAG+AGG 0.581432 5_1:+43240826 None:intergenic
CATGGTGCACCTAAGTGGCT+GGG 0.582332 5_1:+43236929 None:intergenic
TGCTACAAAGTAATAAGAGA+AGG 0.583403 5_1:+43240976 None:intergenic
CTTCTGGAAGCTTGACCAAG+AGG 0.586011 5_1:-43239544 Msa0731770:intron
GCCACAACCTATGTCTAGTA+CGG 0.587892 5_1:+43238659 None:intergenic
ACAAGGAGAATCAGAAAAGG+TGG 0.588315 5_1:-43238238 Msa0731770:CDS
ACTTACACCAGCTTGTATGA+AGG 0.590478 5_1:+43239200 None:intergenic
ACAGTGTCTGTGCTCACGAT+CGG 0.591269 5_1:-43241029 Msa0731770:five_prime_UTR
ATTCGAACCGTACTAGACAT+AGG 0.593344 5_1:-43238666 Msa0731770:CDS
CCGGAAACACCTCGATGTAG+AGG 0.593760 5_1:+43240178 None:intergenic
TCAAGCATGGTGCACCTAAG+TGG 0.595533 5_1:+43236924 None:intergenic
AACATATCAAAAGACAGAGA+TGG 0.597981 5_1:+43238486 None:intergenic
GATATTGGTGAGATTTCTAG+GGG 0.598200 5_1:-43239794 Msa0731770:CDS
TGTGAAAATCACTGCACAAG+AGG 0.598848 5_1:-43239573 Msa0731770:CDS
GAACTGCAAAACTGCATAGG+AGG 0.600256 5_1:-43237959 Msa0731770:CDS
GTAACAAGGAGAATCAGAAA+AGG 0.601806 5_1:-43238241 Msa0731770:CDS
TTGTTACGAGCATTTGTAAG+CGG 0.602642 5_1:+43238257 None:intergenic
CCATCGGAAACATTGAAGCA+AGG 0.605884 5_1:+43239716 None:intergenic
GGCATTGATTGGGACCAGAA+AGG 0.607628 5_1:-43238447 Msa0731770:intron
AAATAATTCTATGATATAGG+GGG 0.607799 5_1:+43235623 None:intergenic
TTGGTGATGTGTCGGAGTCA+AGG 0.608947 5_1:+43241198 None:intergenic
TTTCAATTGAAAGCCAGCGG+CGG 0.609031 5_1:+43237927 None:intergenic
GCTTACAAATGCTCGTAACA+AGG 0.610328 5_1:-43238255 Msa0731770:CDS
GGTTCTCGGGTATGTCGGAA+AGG 0.613488 5_1:+43236995 None:intergenic
TCAAGAGGTCGTGTTTACCA+TGG 0.613690 5_1:-43239857 Msa0731770:CDS
TTACGGCTGCACAGGAGAAG+CGG 0.614675 5_1:+43235826 None:intergenic
GTCAAGAACATGAACTATGT+TGG 0.616082 5_1:+43241179 None:intergenic
CGCGAACTGCAAAACTGCAT+AGG 0.617218 5_1:-43237962 Msa0731770:CDS
AAACATCAATGATGATACAT+GGG 0.617752 5_1:-43240140 Msa0731770:CDS
ACATGTTGTAAGGCGGAGAA+GGG 0.618483 5_1:+43237637 None:intergenic
ATCGAGACCTCTACCACACA+GGG 0.618870 5_1:+43238003 None:intergenic
TTGTGTGGCCTCTAGGTGCG+AGG 0.619318 5_1:-43237018 Msa0731770:intron
TAAGTTGTTGCTCATTGTTG+TGG 0.621756 5_1:-43235672 Msa0731770:three_prime_UTR
GAACTATGTTGGTGATGTGT+CGG 0.622724 5_1:+43241190 None:intergenic
AAGTTCTGCCATACAAAGTG+AGG 0.624339 5_1:-43235890 Msa0731770:three_prime_UTR
GGAACTTTGTAATTAACTGG+TGG 0.627180 5_1:+43239638 None:intergenic
AGGAGACCTCAATGCTAAAG+GGG 0.629846 5_1:+43240054 None:intergenic
AACTCCATCAAACATATGAG+AGG 0.634768 5_1:+43239275 None:intergenic
ATACCCGAGAACCTATGACT+TGG 0.638261 5_1:-43236985 Msa0731770:CDS
TTTCTAGGGGTGCTTCAAGG+TGG 0.639200 5_1:-43239781 Msa0731770:CDS
AAGTGGCTGGGAAAATTCAA+GGG 0.642516 5_1:+43236941 None:intergenic
CTTCCCTTGATCCAGGACCG+AGG 0.642864 5_1:-43237501 Msa0731770:CDS
GTCCAAACAAAGTATCCACC+CGG 0.644568 5_1:+43238284 None:intergenic
GCTGCCTGATGAACTTGGTG+AGG 0.645687 5_1:-43237754 Msa0731770:CDS
CGGCTGCACAGGAGAAGCGG+TGG 0.647779 5_1:+43235829 None:intergenic
AAAGGTTCTCGGCCCCTGTG+TGG 0.648392 5_1:-43238016 Msa0731770:CDS
ACCGTACTAGACATAGGTTG+TGG 0.648823 5_1:-43238660 Msa0731770:CDS
AGCTGAACTTGACTACCAGA+AGG 0.652030 5_1:+43238570 None:intergenic
ATGACTTGGTGCATGCAGCA+GGG 0.652344 5_1:-43236971 Msa0731770:CDS
GCAAAAGGCCGACAAAACCT+CGG 0.652489 5_1:+43237484 None:intergenic
GCATCAAACAAAACTACTAG+GGG 0.657154 5_1:-43240777 Msa0731770:intron
GTTCAGCTTACTCTTGAGCG+AGG 0.669560 5_1:-43238555 Msa0731770:CDS
ATGTTACATTGTGCAAGATG+TGG 0.674130 5_1:-43238468 Msa0731770:CDS
TGACAGGTTACTTCGCCCAG+AGG 0.677454 5_1:-43236886 Msa0731770:intron
TTTCTGAACATGTTGTAAGG+CGG 0.677618 5_1:+43237630 None:intergenic
ACGAGCATTTGTAAGCGGTG+AGG 0.680282 5_1:+43238262 None:intergenic
GCAAGCTAGAAAGTCTGTGT+GGG 0.695074 5_1:-43237559 Msa0731770:CDS
TGCAAGCTAGAAAGTCTGTG+TGG 0.704131 5_1:-43237560 Msa0731770:CDS
GTGTGGTAGAGGTCTCGATG+TGG 0.707920 5_1:-43237999 Msa0731770:CDS
CGAAATCGAAAGTAACAGCG+AGG 0.717535 5_1:-43236035 Msa0731770:CDS
GTCTGTGTGGGTAATGAACG+TGG 0.718175 5_1:-43237547 Msa0731770:CDS
ATGTCTAGGCCTCTACATCG+AGG 0.729495 5_1:-43240187 Msa0731770:CDS
GTGGTGTATAAAATGCTCAG+TGG 0.788427 5_1:-43235653 Msa0731770:three_prime_UTR
TCGAGACCTCTACCACACAG+GGG 0.811954 5_1:+43238004 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTCTTTTCATTT+TGG - chr5_1:43236469-43236488 Msa0731770:intron 10.0%
!! AAATGAATATATGTATATTA+TGG + chr5_1:43240940-43240959 None:intergenic 10.0%
!! TAAACACAATTATTTATTAT+TGG - chr5_1:43241160-43241179 Msa0731770:five_prime_UTR 10.0%
!! AAACACAATTATTTATTATT+GGG - chr5_1:43241161-43241180 Msa0731770:five_prime_UTR 10.0%
!!! TTTAAAAAACTTTTAGTACT+AGG - chr5_1:43235783-43235802 Msa0731770:three_prime_UTR 15.0%
!! AAAATCATTATTCAATTCAA+TGG + chr5_1:43236176-43236195 None:intergenic 15.0%
!! ATTGAAAACTTTAAGTATAT+GGG + chr5_1:43236256-43236275 None:intergenic 15.0%
!! AATTGAAAACTTTAAGTATA+TGG + chr5_1:43236257-43236276 None:intergenic 15.0%
!!! CTTAAAGTTTTCAATTTTAT+TGG - chr5_1:43236261-43236280 Msa0731770:intron 15.0%
!!! TTTTCAATTTTATTGGTTTT+TGG - chr5_1:43236268-43236287 Msa0731770:intron 15.0%
!!! AAATTTTTCTTATTGCTATT+AGG - chr5_1:43239091-43239110 Msa0731770:intron 15.0%
!!! GATAGTGAATTTTTTATTTT+AGG + chr5_1:43240153-43240172 None:intergenic 15.0%
!!! CATGATATTTTATAAAAGTT+TGG + chr5_1:43240384-43240403 None:intergenic 15.0%
!! TTTATGATAATTATGGAAAT+TGG + chr5_1:43240963-43240982 None:intergenic 15.0%
!!! AATTGTTTAGTTTGATCTAA+TGG + chr5_1:43235741-43235760 None:intergenic 20.0%
!!! TTATTGGTTTTTGGTTATAA+TGG - chr5_1:43236277-43236296 Msa0731770:intron 20.0%
!! ATATATATCCATTTCATTAC+TGG - chr5_1:43236306-43236325 Msa0731770:intron 20.0%
!! TATATATCCATTTCATTACT+GGG - chr5_1:43236307-43236326 Msa0731770:intron 20.0%
!!! AAAACTTTTTCTTCTGAAAA+GGG + chr5_1:43236404-43236423 None:intergenic 20.0%
!!! ATCTTTTTCTGATTTATCTT+TGG + chr5_1:43236766-43236785 None:intergenic 20.0%
!!! AAAAAGATGATTTTGATAGA+AGG - chr5_1:43236778-43236797 Msa0731770:intron 20.0%
!!! AAAAGATGATTTTGATAGAA+GGG - chr5_1:43236779-43236798 Msa0731770:intron 20.0%
!! AAAACATCATCAACTTAAAA+CGG + chr5_1:43236914-43236933 None:intergenic 20.0%
!!! TTTTAAGTTGATGATGTTTT+TGG - chr5_1:43236914-43236933 Msa0731770:CDS 20.0%
!! TATGTGATCTTTATTGAAAT+TGG - chr5_1:43237699-43237718 Msa0731770:CDS 20.0%
!!! TGCGTTAATTTTTTTTTTTC+CGG - chr5_1:43237738-43237757 Msa0731770:CDS 20.0%
!! TATCAATCAAACAACATTTA+AGG + chr5_1:43238160-43238179 None:intergenic 20.0%
!!! GGATCTAAATTTTTTTTATC+TGG - chr5_1:43238459-43238478 Msa0731770:CDS 20.0%
!!! TTCCACAATCTTTTAAATAT+TGG - chr5_1:43239481-43239500 Msa0731770:intron 20.0%
!! TAATGTCAATTTCTTGATTA+TGG - chr5_1:43239563-43239582 Msa0731770:CDS 20.0%
!!! TTTATTTTTTCACTTACCTT+TGG - chr5_1:43239761-43239780 Msa0731770:CDS 20.0%
!!! CTATTATAATCATTTTTGTG+TGG - chr5_1:43239838-43239857 Msa0731770:CDS 20.0%
!! TATTAAATTTACATACCTCT+GGG + chr5_1:43240003-43240022 None:intergenic 20.0%
!! TTATTAAATTTACATACCTC+TGG + chr5_1:43240004-43240023 None:intergenic 20.0%
!! CAATTTGTATTTCAAATTGT+AGG - chr5_1:43240081-43240100 Msa0731770:CDS 20.0%
!!! CTTCTGAAGTTTTTTATTTT+AGG - chr5_1:43240263-43240282 Msa0731770:five_prime_UTR 20.0%
!!! ACTAACATGAAATTTTATAG+GGG + chr5_1:43240306-43240325 None:intergenic 20.0%
!!! GACTAACATGAAATTTTATA+GGG + chr5_1:43240307-43240326 None:intergenic 20.0%
!!! AGACTAACATGAAATTTTAT+AGG + chr5_1:43240308-43240327 None:intergenic 20.0%
!! TAAAAGTTTGGTAAAAGTAA+GGG + chr5_1:43240372-43240391 None:intergenic 20.0%
!! ATAAAAGTTTGGTAAAAGTA+AGG + chr5_1:43240373-43240392 None:intergenic 20.0%
!! ACATTAGATATCTAATTTCA+GGG + chr5_1:43240519-43240538 None:intergenic 20.0%
!! TTAGATATCTAATGTCTATT+TGG - chr5_1:43240524-43240543 Msa0731770:intron 20.0%
!!! TTACTCTAGATTTTATCATT+TGG - chr5_1:43240689-43240708 Msa0731770:intron 20.0%
!! TATTATGGTATAGTTTCTTT+AGG + chr5_1:43240925-43240944 None:intergenic 20.0%
!! AAATAATTCTATGATATAGG+GGG + chr5_1:43241251-43241270 None:intergenic 20.0%
! AATGAGAGAGAAAAAAATGA+GGG + chr5_1:43235951-43235970 None:intergenic 25.0%
! AAATGAGAGAGAAAAAAATG+AGG + chr5_1:43235952-43235971 None:intergenic 25.0%
! AAAACTTTAAGTATATGGGT+TGG + chr5_1:43236252-43236271 None:intergenic 25.0%
!!! CAAAACTTTTTCTTCTGAAA+AGG + chr5_1:43236405-43236424 None:intergenic 25.0%
! AAAACATCAATGATGATACA+TGG - chr5_1:43236730-43236749 Msa0731770:intron 25.0%
! AAACATCAATGATGATACAT+GGG - chr5_1:43236731-43236750 Msa0731770:intron 25.0%
!!! AAAGATGATTTTGATAGAAG+GGG - chr5_1:43236780-43236799 Msa0731770:intron 25.0%
!! TTGTTTTCAGATAAAGAGAA+TGG - chr5_1:43236849-43236868 Msa0731770:intron 25.0%
!! TACTGGAAAAGATGTTATTT+GGG - chr5_1:43237268-43237287 Msa0731770:intron 25.0%
!!! TTTTTTTTCCTTTCAATTGC+AGG - chr5_1:43237533-43237552 Msa0731770:CDS 25.0%
!!! GTTAATTTTTTTTTTTCCGG+TGG - chr5_1:43237741-43237760 Msa0731770:CDS 25.0%
! TACGTGAAGTATAAATACAA+CGG + chr5_1:43237774-43237793 None:intergenic 25.0%
! GTATTTATACTTCACGTATT+TGG - chr5_1:43237776-43237795 Msa0731770:intron 25.0%
!!! TTTTGACTTCTGATAGATTT+TGG - chr5_1:43238088-43238107 Msa0731770:intron 25.0%
!! ATCAAACAACATTTAAGGTA+AGG + chr5_1:43238155-43238174 None:intergenic 25.0%
! GATTTAACACAGCAAAATTA+TGG + chr5_1:43238493-43238512 None:intergenic 25.0%
! AAAAGAATTGTTATGCATCA+AGG - chr5_1:43238741-43238760 Msa0731770:intron 25.0%
! ACAGGTAATACTAAGAATTA+GGG + chr5_1:43238819-43238838 None:intergenic 25.0%
! AACAGGTAATACTAAGAATT+AGG + chr5_1:43238820-43238839 None:intergenic 25.0%
!!! TATTACCTGTTTTTATTTCC+AGG - chr5_1:43238829-43238848 Msa0731770:intron 25.0%
! CAATTGAAAAAAGGGAAAAA+TGG - chr5_1:43238958-43238977 Msa0731770:intron 25.0%
! TACATAACAATTACCATGTA+TGG + chr5_1:43239018-43239037 None:intergenic 25.0%
! GACCAATATTTAAAAGATTG+TGG + chr5_1:43239486-43239505 None:intergenic 25.0%
! CTCAAAAAACTAAGCTATAA+AGG + chr5_1:43239534-43239553 None:intergenic 25.0%
!!! CTTTATAGCTTAGTTTTTTG+AGG - chr5_1:43239532-43239551 Msa0731770:intron 25.0%
!!! CAGAATATTAGTTTTACACA+TGG + chr5_1:43239606-43239625 None:intergenic 25.0%
! GCTTGCAAAATATTTAAACT+TGG - chr5_1:43239727-43239746 Msa0731770:CDS 25.0%
!!! TATTTCACTCTAAAACCAAA+TGG + chr5_1:43240060-43240079 None:intergenic 25.0%
!!! ACTATCACATCAGATTTTTT+GGG - chr5_1:43240167-43240186 Msa0731770:CDS 25.0%
! GACATTAGATATCTAATTTC+AGG + chr5_1:43240520-43240539 None:intergenic 25.0%
!!! AAATTTGTTAAGTGTAAGGA+AGG + chr5_1:43240551-43240570 None:intergenic 25.0%
!!! TCGAAAATTTGTTAAGTGTA+AGG + chr5_1:43240555-43240574 None:intergenic 25.0%
! AGTTTGTCAAATAAATCTCA+TGG + chr5_1:43240578-43240597 None:intergenic 25.0%
!! TCTAGATTTTATCATTTGGA+AGG - chr5_1:43240693-43240712 Msa0731770:intron 25.0%
! GCAGAACTTTATGATAATTA+TGG + chr5_1:43240970-43240989 None:intergenic 25.0%
TGCTACAAAGTAATAAGAGA+AGG + chr5_1:43235898-43235917 None:intergenic 30.0%
AAGCATCAAACAAAACTACT+AGG - chr5_1:43236092-43236111 Msa0731770:CDS 30.0%
AGCATCAAACAAAACTACTA+GGG - chr5_1:43236093-43236112 Msa0731770:CDS 30.0%
AGTAAACAACACTCTTGTAT+TGG - chr5_1:43236570-43236589 Msa0731770:intron 30.0%
! GTATCATCATTGATGTTTTC+TGG + chr5_1:43236729-43236748 None:intergenic 30.0%
TCTGAAAACAACAACTTCAA+AGG + chr5_1:43236840-43236859 None:intergenic 30.0%
!!! ATAGTTGTTTTTGCTCTTGT+TGG - chr5_1:43236957-43236976 Msa0731770:CDS 30.0%
! GAAACTTGTTTCAGATTTGT+TGG - chr5_1:43237055-43237074 Msa0731770:intron 30.0%
!! GTTTCAGATTTGTTGGATAT+TGG - chr5_1:43237062-43237081 Msa0731770:intron 30.0%
AGAGGAACTTTGTAATTAAC+TGG + chr5_1:43237239-43237258 None:intergenic 30.0%
ATTACAAAGTTCCTCTTAGA+TGG - chr5_1:43237243-43237262 Msa0731770:intron 30.0%
! CAAATAACATCTTTTCCAGT+AGG + chr5_1:43237269-43237288 None:intergenic 30.0%
CTACTGGAAAAGATGTTATT+TGG - chr5_1:43237267-43237286 Msa0731770:intron 30.0%
CACATATTCCAGTAATATAC+AGG + chr5_1:43237410-43237429 None:intergenic 30.0%
CTGTATATTACTGGAATATG+TGG - chr5_1:43237408-43237427 Msa0731770:intron 30.0%
!!! TTTTAGCTTGTACTTTGTTC+AGG - chr5_1:43238028-43238047 Msa0731770:intron 30.0%
TCAAAATTTGACTGTCAAAG+AGG + chr5_1:43238258-43238277 None:intergenic 30.0%
AACATATCAAAAGACAGAGA+TGG + chr5_1:43238388-43238407 None:intergenic 30.0%
TAATTGACAACCACATTATG+TGG - chr5_1:43238521-43238540 Msa0731770:CDS 30.0%
ATAAGTACATCATGTAAAGC+AGG + chr5_1:43238771-43238790 None:intergenic 30.0%
TTCTTCCTGGAAATAAAAAC+AGG + chr5_1:43238837-43238856 None:intergenic 30.0%
!! GTTTTTATTTCCAGGAAGAA+AGG - chr5_1:43238837-43238856 Msa0731770:intron 30.0%
!!! TTTTTTCAATTGAAAGCCAG+CGG + chr5_1:43238950-43238969 None:intergenic 30.0%
! CTGGCTTTCAATTGAAAAAA+GGG - chr5_1:43238950-43238969 Msa0731770:intron 30.0%
GGATGATCAGAAAATATTAC+AGG + chr5_1:43239193-43239212 None:intergenic 30.0%
ACATTTCTGAACATGTTGTA+AGG + chr5_1:43239247-43239266 None:intergenic 30.0%
TTAGACATGAATGCTAACTT+TGG - chr5_1:43239268-43239287 Msa0731770:CDS 30.0%
! TAAAGTACCAATCATGCAAA+AGG + chr5_1:43239405-43239424 None:intergenic 30.0%
AGTAAATTTAGTACATGCCA+GGG + chr5_1:43239457-43239476 None:intergenic 30.0%
AAGTAAATTTAGTACATGCC+AGG + chr5_1:43239458-43239477 None:intergenic 30.0%
ATCTGTTCATTGAAATTGAC+AGG - chr5_1:43239969-43239988 Msa0731770:CDS 30.0%
!!! CACTATCACATCAGATTTTT+TGG - chr5_1:43240166-43240185 Msa0731770:CDS 30.0%
! TCTAGATCAAATTAGTCTCT+TGG + chr5_1:43240221-43240240 None:intergenic 30.0%
! TCATGTTAGTCTCTTAGAAT+TGG - chr5_1:43240316-43240335 Msa0731770:five_prime_UTR 30.0%
!!! TGAACTTTTTTGCTAAGTGA+GGG + chr5_1:43240412-43240431 None:intergenic 30.0%
!!! ATGAACTTTTTTGCTAAGTG+AGG + chr5_1:43240413-43240432 None:intergenic 30.0%
CTTTCTGATAACATAACAGA+GGG + chr5_1:43240445-43240464 None:intergenic 30.0%
ACTTTCTGATAACATAACAG+AGG + chr5_1:43240446-43240465 None:intergenic 30.0%
! ACAAACTTTCTGAAAAGTGA+GGG - chr5_1:43240591-43240610 Msa0731770:intron 30.0%
! ACTCTAGCTGATTCTATTAA+AGG + chr5_1:43240780-43240799 None:intergenic 30.0%
ATTGCATGTTTCTTGAAGAA+AGG + chr5_1:43240885-43240904 None:intergenic 30.0%
! TTTTCAATCCTCACTTTGTA+TGG + chr5_1:43240992-43241011 None:intergenic 30.0%
ATACAAAGTGAGGATTGAAA+AGG - chr5_1:43240991-43241010 Msa0731770:five_prime_UTR 30.0%
TACAAAGTGAGGATTGAAAA+GGG - chr5_1:43240992-43241011 Msa0731770:five_prime_UTR 30.0%
GGAAGAAGAAAAAACAATAG+AGG - chr5_1:43241013-43241032 Msa0731770:five_prime_UTR 30.0%
GTCAAGAACATGAACTATGT+TGG + chr5_1:43235695-43235714 None:intergenic 35.0%
AGCAAAACACAAGAGGTTAA+TGG + chr5_1:43236041-43236060 None:intergenic 35.0%
GCATCAAACAAAACTACTAG+GGG - chr5_1:43236094-43236113 Msa0731770:CDS 35.0%
TCCGTGATTTATATCAGATG+CGG - chr5_1:43236330-43236349 Msa0731770:intron 35.0%
ACCGCATCTGATATAAATCA+CGG + chr5_1:43236334-43236353 None:intergenic 35.0%
GAAAAGGGAATCAAAAACAG+AGG + chr5_1:43236389-43236408 None:intergenic 35.0%
TAGACTTGTGATTCTTCAAC+TGG - chr5_1:43236497-43236516 Msa0731770:intron 35.0%
! TGTGTTGAAAGAGTATGTCT+AGG - chr5_1:43236670-43236689 Msa0731770:intron 35.0%
ATCAACTTAAAACGGCTTCT+TGG + chr5_1:43236906-43236925 None:intergenic 35.0%
!!! CTCTTGTTGGATCTTTTTTG+TGG - chr5_1:43236970-43236989 Msa0731770:CDS 35.0%
AATTTGTCATCTTCGTCAAG+AGG - chr5_1:43236999-43237018 Msa0731770:CDS 35.0%
TGGATATTGGTGAGATTTCT+AGG - chr5_1:43237075-43237094 Msa0731770:intron 35.0%
GGATATTGGTGAGATTTCTA+GGG - chr5_1:43237076-43237095 Msa0731770:intron 35.0%
! GATATTGGTGAGATTTCTAG+GGG - chr5_1:43237077-43237096 Msa0731770:intron 35.0%
! GGAACAAAATTTTCCAACTC+AGG + chr5_1:43237137-43237156 None:intergenic 35.0%
CCTTTCAAACTCATTTCCAT+CGG + chr5_1:43237174-43237193 None:intergenic 35.0%
TGAGCAGAGTCAAAATTGTT+TGG - chr5_1:43237205-43237224 Msa0731770:intron 35.0%
GGAACTTTGTAATTAACTGG+TGG + chr5_1:43237236-43237255 None:intergenic 35.0%
GTAACTTCATAACTGCGTTA+CGG - chr5_1:43237378-43237397 Msa0731770:intron 35.0%
TAACTTCATAACTGCGTTAC+GGG - chr5_1:43237379-43237398 Msa0731770:intron 35.0%
AATATCAGCAACCGTAATTG+CGG + chr5_1:43237476-43237495 None:intergenic 35.0%
ATCATCATCCTGCAATTGAA+AGG + chr5_1:43237544-43237563 None:intergenic 35.0%
AACTCCATCAAACATATGAG+AGG + chr5_1:43237599-43237618 None:intergenic 35.0%
CATCAGATTGCTGAAATGAT+TGG - chr5_1:43237631-43237650 Msa0731770:CDS 35.0%
ATGTTGGGTTCAACGTAAAT+AGG - chr5_1:43237809-43237828 Msa0731770:intron 35.0%
TGTTGGGTTCAACGTAAATA+GGG - chr5_1:43237810-43237829 Msa0731770:intron 35.0%
TCAAAAGACAGAGATGGATA+TGG + chr5_1:43238382-43238401 None:intergenic 35.0%
ATGTTACATTGTGCAAGATG+TGG - chr5_1:43238403-43238422 Msa0731770:intron 35.0%
CCTAAACTCAAATACCTTTC+TGG + chr5_1:43238441-43238460 None:intergenic 35.0%
!! CCAGAAAGGTATTTGAGTTT+AGG - chr5_1:43238438-43238457 Msa0731770:intron 35.0%
ACCACATTATGTGGAATAGA+TGG - chr5_1:43238530-43238549 Msa0731770:CDS 35.0%
!!! AGCTGATAGACTTTTAAGAC+CGG - chr5_1:43238568-43238587 Msa0731770:CDS 35.0%
TTGTTACGAGCATTTGTAAG+CGG + chr5_1:43238617-43238636 None:intergenic 35.0%
GTAACAAGGAGAATCAGAAA+AGG - chr5_1:43238630-43238649 Msa0731770:CDS 35.0%
! TTTTGCAGTTCGCGATAATA+TGG + chr5_1:43238903-43238922 None:intergenic 35.0%
!! GCTGGCTTTCAATTGAAAAA+AGG - chr5_1:43238949-43238968 Msa0731770:intron 35.0%
AAGAATGAGTTAGCCATACA+TGG - chr5_1:43239002-43239021 Msa0731770:intron 35.0%
AAGCAGCAGTGCAAAATTAT+TGG - chr5_1:43239155-43239174 Msa0731770:intron 35.0%
! TATTTTCTGATCATCCGAAG+AGG - chr5_1:43239197-43239216 Msa0731770:intron 35.0%
TTTCTGAACATGTTGTAAGG+CGG + chr5_1:43239244-43239263 None:intergenic 35.0%
TTCAATGAACAGATCAAGCA+TGG + chr5_1:43239963-43239982 None:intergenic 35.0%
CTAAAACCAAATGGAAGGAA+AGG + chr5_1:43240051-43240070 None:intergenic 35.0%
!! TCACTCTAAAACCAAATGGA+AGG + chr5_1:43240056-43240075 None:intergenic 35.0%
! AGTCTCTTGGACACAATTTT+AGG + chr5_1:43240208-43240227 None:intergenic 35.0%
! TGTTAGTCTCTTAGAATTGG+TGG - chr5_1:43240319-43240338 Msa0731770:five_prime_UTR 35.0%
TAAAAGTAAGGGACCAAGTT+GGG + chr5_1:43240361-43240380 None:intergenic 35.0%
!!! GAACTTTTTTGCTAAGTGAG+GGG + chr5_1:43240411-43240430 None:intergenic 35.0%
GAAAGTTTGTCATGTCAGAT+TGG - chr5_1:43240460-43240479 Msa0731770:intron 35.0%
!! TTACTCAGAGAGTATCAAGT+TGG - chr5_1:43240492-43240511 Msa0731770:intron 35.0%
! GACAAACTTTCTGAAAAGTG+AGG - chr5_1:43240590-43240609 Msa0731770:intron 35.0%
GTTTCTTGAAGAAAGGTTTC+TGG + chr5_1:43240878-43240897 None:intergenic 35.0%
AAGCAGCTGACAAAGAATAT+TGG - chr5_1:43241098-43241117 Msa0731770:five_prime_UTR 35.0%
TAAGTTGTTGCTCATTGTTG+TGG - chr5_1:43241199-43241218 Msa0731770:five_prime_UTR 35.0%
AGGCTTAGGATAAGAGTGAA+TGG + chr5_1:43235633-43235652 None:intergenic 40.0%
!! TTTTAGGTGCTTAGGCAGTT+AGG + chr5_1:43235653-43235672 None:intergenic 40.0%
!!! AGTCAAGGTTTTAGGTGCTT+AGG + chr5_1:43235661-43235680 None:intergenic 40.0%
!! GAACTATGTTGGTGATGTGT+CGG + chr5_1:43235684-43235703 None:intergenic 40.0%
GTCGAATGATTAACGTGCAT+TGG + chr5_1:43235975-43235994 None:intergenic 40.0%
CTTGCAAAGCAAAACACAAG+AGG + chr5_1:43236048-43236067 None:intergenic 40.0%
TGGAGCTGGATTCTCAAAAA+GGG - chr5_1:43236517-43236536 Msa0731770:intron 40.0%
AAGGAGACCTCAATGCTAAA+GGG + chr5_1:43236821-43236840 None:intergenic 40.0%
AAAGGAGACCTCAATGCTAA+AGG + chr5_1:43236822-43236841 None:intergenic 40.0%
GTCGTGTTTACCATGGTTAT+AGG - chr5_1:43237021-43237040 Msa0731770:intron 40.0%
CTTGAAGTCTCCTATAACCA+TGG + chr5_1:43237034-43237053 None:intergenic 40.0%
TGCTTCAAGGTGGAAAGAAT+TGG - chr5_1:43237100-43237119 Msa0731770:intron 40.0%
CCGATGGAAATGAGTTTGAA+AGG - chr5_1:43237171-43237190 Msa0731770:intron 40.0%
TGTGAAAATCACTGCACAAG+AGG - chr5_1:43237298-43237317 Msa0731770:intron 40.0%
GACACATGTTAGTTACCTCT+TGG + chr5_1:43237345-43237364 None:intergenic 40.0%
AACTTCATAACTGCGTTACG+GGG - chr5_1:43237380-43237399 Msa0731770:intron 40.0%
ATATCAGCAACCGTAATTGC+GGG + chr5_1:43237475-43237494 None:intergenic 40.0%
! CAATTGCAGGATGATGATGT+TGG - chr5_1:43237546-43237565 Msa0731770:CDS 40.0%
TCAGCCTCTCATATGTTTGA+TGG - chr5_1:43237592-43237611 Msa0731770:CDS 40.0%
GAATCTTCCTTCATACAAGC+TGG - chr5_1:43237664-43237683 Msa0731770:CDS 40.0%
ACTTACACCAGCTTGTATGA+AGG + chr5_1:43237674-43237693 None:intergenic 40.0%
ATACAACGGATAAAGACCAC+CGG + chr5_1:43237760-43237779 None:intergenic 40.0%
TTCACGTATTTGGTACACAC+TGG - chr5_1:43237786-43237805 Msa0731770:intron 40.0%
ATTTGGTACACACTGGATGT+TGG - chr5_1:43237793-43237812 Msa0731770:intron 40.0%
TTTGGTACACACTGGATGTT+GGG - chr5_1:43237794-43237813 Msa0731770:intron 40.0%
GTTGGGTTCAACGTAAATAG+GGG - chr5_1:43237811-43237830 Msa0731770:intron 40.0%
TTGGGTTCAACGTAAATAGG+GGG - chr5_1:43237812-43237831 Msa0731770:intron 40.0%
TAGTAGTCGCAGTTACAGTT+TGG - chr5_1:43237855-43237874 Msa0731770:intron 40.0%
CATCAAAAACCGTCATGTCT+TGG - chr5_1:43237938-43237957 Msa0731770:CDS 40.0%
CAATATGGACCAAGACATGA+CGG + chr5_1:43237950-43237969 None:intergenic 40.0%
TCATGTCTTGGTCCATATTG+TGG - chr5_1:43237950-43237969 Msa0731770:CDS 40.0%
AGTGTTTGCCAACCACAATA+TGG + chr5_1:43237965-43237984 None:intergenic 40.0%
GGTTCGAATCTGGAAATTTC+AGG + chr5_1:43238194-43238213 None:intergenic 40.0%
ATTCGAACCGTACTAGACAT+AGG - chr5_1:43238205-43238224 Msa0731770:CDS 40.0%
ATTGCAAACTATGAGCCTTC+TGG - chr5_1:43238286-43238305 Msa0731770:CDS 40.0%
GTGAAAGAAGCAATCATAGC+AGG + chr5_1:43238346-43238365 None:intergenic 40.0%
!! TGCAAGATGTGGCATTGATT+GGG - chr5_1:43238414-43238433 Msa0731770:intron 40.0%
GCCATCTATTCCACATAATG+TGG + chr5_1:43238534-43238553 None:intergenic 40.0%
!!! GCTGATAGACTTTTAAGACC+GGG - chr5_1:43238569-43238588 Msa0731770:CDS 40.0%
GCTTACAAATGCTCGTAACA+AGG - chr5_1:43238616-43238635 Msa0731770:CDS 40.0%
ACAAGGAGAATCAGAAAAGG+TGG - chr5_1:43238633-43238652 Msa0731770:CDS 40.0%
ACTTTACCGAAAATCTGTGC+TGG - chr5_1:43238669-43238688 Msa0731770:CDS 40.0%
CTTTACCGAAAATCTGTGCT+GGG - chr5_1:43238670-43238689 Msa0731770:intron 40.0%
TTTCCAGGAAGAAAGGTTCT+CGG - chr5_1:43238844-43238863 Msa0731770:intron 40.0%
AAAGGGAAAAATGGCCTTCT+CGG - chr5_1:43238967-43238986 Msa0731770:intron 40.0%
TTGTTCAAATTAGCCCGAGA+AGG + chr5_1:43238984-43239003 None:intergenic 40.0%
CAGAAAATATTACAGGCGAC+AGG + chr5_1:43239186-43239205 None:intergenic 40.0%
GACATGAATGCTAACTTTGG+TGG - chr5_1:43239271-43239290 Msa0731770:CDS 40.0%
GATAGTTAGGTCCAGTTCTT+GGG + chr5_1:43239351-43239370 None:intergenic 40.0%
AGATAGTTAGGTCCAGTTCT+TGG + chr5_1:43239352-43239371 None:intergenic 40.0%
TGGATCAAGGGAAGATAGTT+AGG + chr5_1:43239364-43239383 None:intergenic 40.0%
TAACTATCTTCCCTTGATCC+AGG - chr5_1:43239363-43239382 Msa0731770:intron 40.0%
TCCTTCCTCTTGTCCTTATA+TGG - chr5_1:43239428-43239447 Msa0731770:intron 40.0%
TCCATATAAGGACAAGAGGA+AGG + chr5_1:43239432-43239451 None:intergenic 40.0%
GGAATCCATATAAGGACAAG+AGG + chr5_1:43239436-43239455 None:intergenic 40.0%
TTGTCCTTATATGGATTCCC+TGG - chr5_1:43239437-43239456 Msa0731770:intron 40.0%
CCATGACTCTGTATGAAGTA+GGG + chr5_1:43239508-43239527 None:intergenic 40.0%
ACCATGACTCTGTATGAAGT+AGG + chr5_1:43239509-43239528 None:intergenic 40.0%
!! ATCATTTTTGTGTGGCCTCT+AGG - chr5_1:43239846-43239865 Msa0731770:CDS 40.0%
AAGTGGCTGGGAAAATTCAA+GGG + chr5_1:43239933-43239952 None:intergenic 40.0%
TAAGTGGCTGGGAAAATTCA+AGG + chr5_1:43239934-43239953 None:intergenic 40.0%
! TTGAATTTTCCCAGCCACTT+AGG - chr5_1:43239933-43239952 Msa0731770:CDS 40.0%
TCCATTCCTTTCCTTCCATT+TGG - chr5_1:43240042-43240061 Msa0731770:CDS 40.0%
ACCAAATGGAAGGAAAGGAA+TGG + chr5_1:43240046-43240065 None:intergenic 40.0%
ACTCTATGAATTGCCCAACT+TGG - chr5_1:43240345-43240364 Msa0731770:five_prime_UTR 40.0%
GTAAAAGTAAGGGACCAAGT+TGG + chr5_1:43240362-43240381 None:intergenic 40.0%
ATACTCTCTGAGTAACTCCA+AGG + chr5_1:43240487-43240506 None:intergenic 40.0%
TTTGCCAGCATGTGTCAATT+TGG + chr5_1:43240648-43240667 None:intergenic 40.0%
! TGTTGTTTGTCATGTGTGCA+GGG - chr5_1:43240729-43240748 Msa0731770:intron 40.0%
!! AGAAAGGTTTCTGGCATATC+AGG + chr5_1:43240869-43240888 None:intergenic 40.0%
AAGTTCTGCCATACAAAGTG+AGG - chr5_1:43240981-43241000 Msa0731770:five_prime_UTR 40.0%
GTGGTGTATAAAATGCTCAG+TGG - chr5_1:43241218-43241237 Msa0731770:five_prime_UTR 40.0%
! TGTGTCGGAGTCAAGGTTTT+AGG + chr5_1:43235669-43235688 None:intergenic 45.0%
TCACGGACCCAGTAATGAAA+TGG + chr5_1:43236317-43236336 None:intergenic 45.0%
TGTGATTCTTCAACTGGAGC+TGG - chr5_1:43236503-43236522 Msa0731770:intron 45.0%
CTGGAGCTGGATTCTCAAAA+AGG - chr5_1:43236516-43236535 Msa0731770:intron 45.0%
!! GTTTTCTGGTACACGAGTAC+CGG + chr5_1:43236715-43236734 None:intergenic 45.0%
ATCACACCCCTTTAGCATTG+AGG - chr5_1:43236811-43236830 Msa0731770:intron 45.0%
AGGAGACCTCAATGCTAAAG+GGG + chr5_1:43236820-43236839 None:intergenic 45.0%
GCATCTGATCCAATCAGTGT+TGG - chr5_1:43236876-43236895 Msa0731770:intron 45.0%
TCAAGAGGTCGTGTTTACCA+TGG - chr5_1:43237014-43237033 Msa0731770:intron 45.0%
!! AGATTTCTAGGGGTGCTTCA+AGG - chr5_1:43237087-43237106 Msa0731770:intron 45.0%
GGAATCTTGTTCTCCTGAGT+TGG - chr5_1:43237121-43237140 Msa0731770:intron 45.0%
CCATCGGAAACATTGAAGCA+AGG + chr5_1:43237158-43237177 None:intergenic 45.0%
CCTTGCTTCAATGTTTCCGA+TGG - chr5_1:43237155-43237174 Msa0731770:intron 45.0%
TTTCCAGTAGGCCATCTAAG+AGG + chr5_1:43237257-43237276 None:intergenic 45.0%
GCACAAGAGGTTCTTTCTTC+TGG - chr5_1:43237311-43237330 Msa0731770:intron 45.0%
GGGGAGAACCTGTATATTAC+TGG - chr5_1:43237399-43237418 Msa0731770:intron 45.0%
GTTGCCAATACCCGCAATTA+CGG - chr5_1:43237462-43237481 Msa0731770:intron 45.0%
CATATGAGAGGCTGAACGAA+AGG + chr5_1:43237587-43237606 None:intergenic 45.0%
TGGGTTCAACGTAAATAGGG+GGG - chr5_1:43237813-43237832 Msa0731770:intron 45.0%
! AACTCAATCGCTGTTGCTTG+CGG - chr5_1:43237906-43237925 Msa0731770:CDS 45.0%
GTCTTGGTCCATATTGTGGT+TGG - chr5_1:43237954-43237973 Msa0731770:CDS 45.0%
TGTCTAGTACGGTTCGAATC+TGG + chr5_1:43238204-43238223 None:intergenic 45.0%
ACCGTACTAGACATAGGTTG+TGG - chr5_1:43238211-43238230 Msa0731770:CDS 45.0%
GCCACAACCTATGTCTAGTA+CGG + chr5_1:43238215-43238234 None:intergenic 45.0%
CTAGACATAGGTTGTGGCTA+TGG - chr5_1:43238217-43238236 Msa0731770:CDS 45.0%
AGCTGAACTTGACTACCAGA+AGG + chr5_1:43238304-43238323 None:intergenic 45.0%
!! GTGCAAGATGTGGCATTGAT+TGG - chr5_1:43238413-43238432 Msa0731770:intron 45.0%
!!! GATAGACTTTTAAGACCGGG+TGG - chr5_1:43238572-43238591 Msa0731770:CDS 45.0%
! GTCCAAACAAAGTATCCACC+CGG + chr5_1:43238590-43238609 None:intergenic 45.0%
! CATGTCCCAGCACAGATTTT+CGG + chr5_1:43238678-43238697 None:intergenic 45.0%
GAACTGCAAAACTGCATAGG+AGG - chr5_1:43238912-43238931 Msa0731770:intron 45.0%
TTTCAATTGAAAGCCAGCGG+CGG + chr5_1:43238947-43238966 None:intergenic 45.0%
AAGGGAAAAATGGCCTTCTC+GGG - chr5_1:43238968-43238987 Msa0731770:intron 45.0%
ACATGTTGTAAGGCGGAGAA+GGG + chr5_1:43239237-43239256 None:intergenic 45.0%
AACATGTTGTAAGGCGGAGA+AGG + chr5_1:43239238-43239257 None:intergenic 45.0%
TGCAAGCTAGAAAGTCTGTG+TGG - chr5_1:43239311-43239330 Msa0731770:CDS 45.0%
GCAAGCTAGAAAGTCTGTGT+GGG - chr5_1:43239312-43239331 Msa0731770:CDS 45.0%
! TTGTCGGCCTTTTGCATGAT+TGG - chr5_1:43239395-43239414 Msa0731770:intron 45.0%
CATGCCAGGGAATCCATATA+AGG + chr5_1:43239444-43239463 None:intergenic 45.0%
CCCTACTTCATACAGAGTCA+TGG - chr5_1:43239505-43239524 Msa0731770:intron 45.0%
TCATAGGTTCTCGGGTATGT+CGG + chr5_1:43239884-43239903 None:intergenic 45.0%
ATACCCGAGAACCTATGACT+TGG - chr5_1:43239886-43239905 Msa0731770:CDS 45.0%
TGCACCAAGTCATAGGTTCT+CGG + chr5_1:43239893-43239912 None:intergenic 45.0%
! TGTCATGTCAGATTGGTCCT+TGG - chr5_1:43240467-43240486 Msa0731770:intron 45.0%
GGCAAAGTGAGGGACTAATT+TGG - chr5_1:43240662-43240681 Msa0731770:intron 45.0%
! CTGTTGTTTGTCATGTGTGC+AGG - chr5_1:43240728-43240747 Msa0731770:intron 45.0%
TCTTGCTTCCCATTTCAGCT+GGG + chr5_1:43240811-43240830 None:intergenic 45.0%
CGAAATCGAAAGTAACAGCG+AGG - chr5_1:43240836-43240855 Msa0731770:five_prime_UTR 45.0%
TTCTTTGTCAGCTGCTTGTG+TGG + chr5_1:43241095-43241114 None:intergenic 45.0%
GTGCTTAGGCAGTTAGGCTT+AGG + chr5_1:43235647-43235666 None:intergenic 50.0%
!! TTGGTGATGTGTCGGAGTCA+AGG + chr5_1:43235676-43235695 None:intergenic 50.0%
ACAGTGTCTGTGCTCACGAT+CGG - chr5_1:43235842-43235861 Msa0731770:three_prime_UTR 50.0%
ATGTCTAGGCCTCTACATCG+AGG - chr5_1:43236684-43236703 Msa0731770:intron 50.0%
! CCTCTACATCGAGGTGTTTC+CGG - chr5_1:43236693-43236712 Msa0731770:intron 50.0%
CTTGGTGAGCCAACACTGAT+TGG + chr5_1:43236888-43236907 None:intergenic 50.0%
!! TTTCTAGGGGTGCTTCAAGG+TGG - chr5_1:43237090-43237109 Msa0731770:intron 50.0%
GTTCCTCTTAGATGGCCTAC+TGG - chr5_1:43237251-43237270 Msa0731770:intron 50.0%
! CTTCTGGAAGCTTGACCAAG+AGG - chr5_1:43237327-43237346 Msa0731770:intron 50.0%
CTGGAATATGTGGCTGATGC+TGG - chr5_1:43237418-43237437 Msa0731770:intron 50.0%
GCAACCGTAATTGCGGGTAT+TGG + chr5_1:43237469-43237488 None:intergenic 50.0%
GGGTTCAACGTAAATAGGGG+GGG - chr5_1:43237814-43237833 Msa0731770:intron 50.0%
! ATCGCTGTTGCTTGCGGTTT+CGG - chr5_1:43237912-43237931 Msa0731770:CDS 50.0%
GGTTGTGGCTATGGTAGCTT+TGG - chr5_1:43238226-43238245 Msa0731770:CDS 50.0%
GTTCAGCTTACTCTTGAGCG+AGG - chr5_1:43238316-43238335 Msa0731770:CDS 50.0%
!! GGCATTGATTGGGACCAGAA+AGG - chr5_1:43238424-43238443 Msa0731770:intron 50.0%
GACCGGGTGGATACTTTGTT+TGG - chr5_1:43238585-43238604 Msa0731770:CDS 50.0%
ACGAGCATTTGTAAGCGGTG+AGG + chr5_1:43238612-43238631 None:intergenic 50.0%
ATCGAGACCTCTACCACACA+GGG + chr5_1:43238871-43238890 None:intergenic 50.0%
CGCGAACTGCAAAACTGCAT+AGG - chr5_1:43238909-43238928 Msa0731770:intron 50.0%
TTCAATTGAAAGCCAGCGGC+GGG + chr5_1:43238946-43238965 None:intergenic 50.0%
GGATTGCTGCCTGATGAACT+TGG - chr5_1:43239112-43239131 Msa0731770:intron 50.0%
GAGTCCTCACCAAGTTCATC+AGG + chr5_1:43239124-43239143 None:intergenic 50.0%
GTCTGTGTGGGTAATGAACG+TGG - chr5_1:43239324-43239343 Msa0731770:intron 50.0%
ATGAACGTGGTCCCAAGAAC+TGG - chr5_1:43239337-43239356 Msa0731770:intron 50.0%
AAACCTCGGTCCTGGATCAA+GGG + chr5_1:43239376-43239395 None:intergenic 50.0%
AAAACCTCGGTCCTGGATCA+AGG + chr5_1:43239377-43239396 None:intergenic 50.0%
!! ATCCAGGACCGAGGTTTTGT+CGG - chr5_1:43239379-43239398 Msa0731770:intron 50.0%
GCAAAAGGCCGACAAAACCT+CGG + chr5_1:43239390-43239409 None:intergenic 50.0%
TCTGCAAGACTCTGAGCCAA+AGG + chr5_1:43239780-43239799 None:intergenic 50.0%
GCACCAAGTCATAGGTTCTC+GGG + chr5_1:43239892-43239911 None:intergenic 50.0%
TGCTGCATGCACCAAGTCAT+AGG + chr5_1:43239900-43239919 None:intergenic 50.0%
!! TATGACTTGGTGCATGCAGC+AGG - chr5_1:43239899-43239918 Msa0731770:CDS 50.0%
!! ATGACTTGGTGCATGCAGCA+GGG - chr5_1:43239900-43239919 Msa0731770:CDS 50.0%
TCAAGCATGGTGCACCTAAG+TGG + chr5_1:43239950-43239969 None:intergenic 50.0%
GGGACCAAATTGACACATGC+TGG - chr5_1:43240641-43240660 Msa0731770:intron 50.0%
TGACACATGCTGGCAAAGTG+AGG - chr5_1:43240651-43240670 Msa0731770:intron 50.0%
GACACATGCTGGCAAAGTGA+GGG - chr5_1:43240652-43240671 Msa0731770:intron 50.0%
GTTTGTCATGTGTGCAGGGT+TGG - chr5_1:43240733-43240752 Msa0731770:intron 50.0%
TCTTAGCAGCCCAGCTGAAA+TGG - chr5_1:43240799-43240818 Msa0731770:five_prime_UTR 50.0%
CTTAGCAGCCCAGCTGAAAT+GGG - chr5_1:43240800-43240819 Msa0731770:five_prime_UTR 50.0%
CTCTTGCTTCCCATTTCAGC+TGG + chr5_1:43240812-43240831 None:intergenic 50.0%
ATGACCCTATGCACGCCTTA+CGG + chr5_1:43241065-43241084 None:intergenic 50.0%
CAGACACTGTCTGCTCGCTT+CGG + chr5_1:43235832-43235851 None:intergenic 55.0%
CCGGAAACACCTCGATGTAG+AGG + chr5_1:43236696-43236715 None:intergenic 55.0%
TCGAGACCTCTACCACACAG+GGG + chr5_1:43238870-43238889 None:intergenic 55.0%
CATCGAGACCTCTACCACAC+AGG + chr5_1:43238872-43238891 None:intergenic 55.0%
GTGTGGTAGAGGTCTCGATG+TGG - chr5_1:43238872-43238891 Msa0731770:intron 55.0%
! GCTGCCTGATGAACTTGGTG+AGG - chr5_1:43239117-43239136 Msa0731770:intron 55.0%
TTGGTGAGGACTCTGACAGC+TGG - chr5_1:43239131-43239150 Msa0731770:intron 55.0%
TCTGATCATCCGAAGAGGCC+CGG - chr5_1:43239202-43239221 Msa0731770:intron 55.0%
GGTTCTCGGGTATGTCGGAA+AGG + chr5_1:43239879-43239898 None:intergenic 55.0%
CATGGTGCACCTAAGTGGCT+GGG + chr5_1:43239945-43239964 None:intergenic 55.0%
TGACAGGTTACTTCGCCCAG+AGG - chr5_1:43239985-43240004 Msa0731770:CDS 55.0%
TTACGGCTGCACAGGAGAAG+CGG + chr5_1:43241048-43241067 None:intergenic 55.0%
GGGCCGAGAACCTTTCTTCC+TGG + chr5_1:43238850-43238869 None:intergenic 60.0%
AAAGGTTCTCGGCCCCTGTG+TGG - chr5_1:43238855-43238874 Msa0731770:intron 60.0%
CTTCCCTTGATCCAGGACCG+AGG - chr5_1:43239370-43239389 Msa0731770:intron 60.0%
TTGTGTGGCCTCTAGGTGCG+AGG - chr5_1:43239853-43239872 Msa0731770:CDS 60.0%
GCATGGTGCACCTAAGTGGC+TGG + chr5_1:43239946-43239965 None:intergenic 60.0%
GCTTCTCCTGTGCAGCCGTA+AGG - chr5_1:43241047-43241066 Msa0731770:five_prime_UTR 60.0%
TGCAGCCGTAAGGCGTGCAT+AGG - chr5_1:43241057-43241076 Msa0731770:five_prime_UTR 60.0%
GCAGCCGTAAGGCGTGCATA+GGG - chr5_1:43241058-43241077 Msa0731770:five_prime_UTR 60.0%
TCTCGGCCCCTGTGTGGTAG+AGG - chr5_1:43238861-43238880 Msa0731770:intron 65.0%
TCCTCGTCACCGGGCCTCTT+CGG + chr5_1:43239214-43239233 None:intergenic 65.0%
GGAGAAGGGTCCTCGTCACC+GGG + chr5_1:43239223-43239242 None:intergenic 65.0%
CGGAGAAGGGTCCTCGTCAC+CGG + chr5_1:43239224-43239243 None:intergenic 65.0%
GGCCGACAAAACCTCGGTCC+TGG + chr5_1:43239384-43239403 None:intergenic 65.0%
CGGAAAGGCCTCGCACCTAG+AGG + chr5_1:43239864-43239883 None:intergenic 65.0%
TGCACGCCTTACGGCTGCAC+AGG + chr5_1:43241056-43241075 None:intergenic 65.0%
GAGGAACACAGACCCGCCGC+TGG - chr5_1:43238931-43238950 Msa0731770:intron 70.0%
TCCGAAGAGGCCCGGTGACG+AGG - chr5_1:43239210-43239229 Msa0731770:CDS 70.0%
CGGCTGCACAGGAGAAGCGG+TGG + chr5_1:43241045-43241064 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 43235623 43241270 43235623 ID=Msa0731770;Name=Msa0731770
chr5_1 mRNA 43235623 43241270 43235623 ID=Msa0731770-mRNA-1;Parent=Msa0731770;Name=Msa0731770-mRNA-1;_AED=0.02;_eAED=0.02;_QI=675|1|1|1|0.87|0.77|9|362|675
chr5_1 exon 43235623 43236143 43235623 ID=Msa0731770-mRNA-1:exon:12361;Parent=Msa0731770-mRNA-1
chr5_1 exon 43236887 43237025 43236887 ID=Msa0731770-mRNA-1:exon:12360;Parent=Msa0731770-mRNA-1
chr5_1 exon 43237477 43237780 43237477 ID=Msa0731770-mRNA-1:exon:12359;Parent=Msa0731770-mRNA-1
chr5_1 exon 43237870 43238042 43237870 ID=Msa0731770-mRNA-1:exon:12358;Parent=Msa0731770-mRNA-1
chr5_1 exon 43238131 43238344 43238131 ID=Msa0731770-mRNA-1:exon:12357;Parent=Msa0731770-mRNA-1
chr5_1 exon 43238448 43238688 43238448 ID=Msa0731770-mRNA-1:exon:12356;Parent=Msa0731770-mRNA-1
chr5_1 exon 43239206 43239338 43239206 ID=Msa0731770-mRNA-1:exon:12355;Parent=Msa0731770-mRNA-1
chr5_1 exon 43239545 43240393 43239545 ID=Msa0731770-mRNA-1:exon:12354;Parent=Msa0731770-mRNA-1
chr5_1 exon 43240780 43241270 43240780 ID=Msa0731770-mRNA-1:exon:12353;Parent=Msa0731770-mRNA-1
chr5_1 five_prime_UTR 43240780 43241270 43240780 ID=Msa0731770-mRNA-1:five_prime_utr;Parent=Msa0731770-mRNA-1
chr5_1 five_prime_UTR 43240210 43240393 43240210 ID=Msa0731770-mRNA-1:five_prime_utr;Parent=Msa0731770-mRNA-1
chr5_1 CDS 43239545 43240209 43239545 ID=Msa0731770-mRNA-1:cds;Parent=Msa0731770-mRNA-1
chr5_1 CDS 43239206 43239338 43239206 ID=Msa0731770-mRNA-1:cds;Parent=Msa0731770-mRNA-1
chr5_1 CDS 43238448 43238688 43238448 ID=Msa0731770-mRNA-1:cds;Parent=Msa0731770-mRNA-1
chr5_1 CDS 43238131 43238344 43238131 ID=Msa0731770-mRNA-1:cds;Parent=Msa0731770-mRNA-1
chr5_1 CDS 43237870 43238042 43237870 ID=Msa0731770-mRNA-1:cds;Parent=Msa0731770-mRNA-1
chr5_1 CDS 43237477 43237780 43237477 ID=Msa0731770-mRNA-1:cds;Parent=Msa0731770-mRNA-1
chr5_1 CDS 43236887 43237025 43236887 ID=Msa0731770-mRNA-1:cds;Parent=Msa0731770-mRNA-1
chr5_1 CDS 43235985 43236143 43235985 ID=Msa0731770-mRNA-1:cds;Parent=Msa0731770-mRNA-1
chr5_1 three_prime_UTR 43235623 43235984 43235623 ID=Msa0731770-mRNA-1:three_prime_utr;Parent=Msa0731770-mRNA-1
Gene Sequence

>Msa0731770

ATGTCTAGGCCTCTACATCGAGGTGTTTCCGGTACTCGTGTACCAGAAAACATCAATGATGATACATGGGACTCACAATCCAAAGATAAATCAGAAAAAGATGATTTTGATAGAAGGGGTTCTTCAGATCACACCCCTTTAGCATTGAGGTCTCCTTTGAAGTTGTTGTTTTCAGATAAAGAGAATGGTTTTGCATCTGATCCAATCAGTGTTGGCTCACCAAGAAGCCGTTTTAAGTTGATGATGTTTTTGGTGAAATTTAGTTTAGTTTTTATAGTTGTTTTTGCTCTTGTTGGATCTTTTTTGTGGACTTTGAATTTGTCATCTTCGTCAAGAGGTCGTGTTTACCATGGTTATAGGAGACTTCAAGAGAAACTTGTTTCAGATTTGTTGGATATTGGTGAGATTTCTAGGGGTGCTTCAAGGTGGAAAGAATTGGAATCTTGTTCTCCTGAGTTGGAAAATTTTGTTCCTTGCTTCAATGTTTCCGATGGAAATGAGTTTGAAAGGAAATGTGAATATGAGCAGAGTCAAAATTGTTTGGTTCTGCCACCAGTTAATTACAAAGTTCCTCTTAGATGGCCTACTGGAAAAGATGTTATTTGGGTTGCTAATGTGAAAATCACTGCACAAGAGGTTCTTTCTTCTGGAAGCTTGACCAAGAGGATGATGATGTTGGATGAAGAACAAATTTCCTTTCGTTCAGCCTCTCATATGTTTGATGGAGTTGAAGACTATTCACATCAGATTGCTGAAATGATTGGACTTAGAAATGAATCTTCCTTCATACAAGCTGGTATTCGAACCGTACTAGACATAGGTTGTGGCTATGGTAGCTTTGGAGCACACCTCTTTGACAGTCAAATTTTGACTTTGTGCATTGCAAACTATGAGCCTTCTGGTAGTCAAGTTCAGCTTACTCTTGAGCGAGGTCTTCCTGCTATGATTGCTTCTTTCACTTCAAAACAGTTGCCATATCCATCTCTGTCTTTTGATATGTTACATTGTGCAAGATGTGGCATTGATTGGGACCAGAAAGATGGCAATCTCTTGATTGAAGCTGATAGACTTTTAAGACCGGGTGGATACTTTGTTTGGACCTCACCGCTTACAAATGCTCGTAACAAGGAGAATCAGAAAAGGTGGAAGATTGTGCACGACTTTACCGAAAATCTGTGCTGGGACATGTTATCACAGCAAGATGAAACTGTTGTATTTAAAAAAGCAAGCAAAAAGAATTGTTATGCATCAAGGAAGAAAGGTTCTCGGCCCCTGTGTGGTAGAGGTCTCGATGTGGAGTCTCCATATTATCGCGAACTGCAAAACTGCATAGGAGGAACACAGACCCGCCGCTGGCTTTCAATTGAAAAAAGGGAAAAATGGCCTTCTCGGGCTAATTTGAACAAGAATGAGTTAGCCATACATGGATTGCTGCCTGATGAACTTGGTGAGGACTCTGACAGCTGGAAAGCAGCAGTGCAAAATTATTGGTCACTCCTGTCGCCTGTAATATTTTCTGATCATCCGAAGAGGCCCGGTGACGAGGACCCTTCTCCGCCTTACAACATGTTCAGAAATGTGTTAGACATGAATGCTAACTTTGGTGGCTTTAATTCTGCTTTGTTGCAAGCTAGAAAGTCTGTGTGGGTAATGAACGTGGTCCCAAGAACTGGACCTAACTATCTTCCCTTGATCCAGGACCGAGGTTTTGTCGGCCTTTTGCATGATTGGTGCGAGGCCTTTCCGACATACCCGAGAACCTATGACTTGGTGCATGCAGCAGGGATTCTATCCCTTGAATTTTCCCAGCCACTTAGGTGCACCATGCTTGATCTGTTCATTGAAATTGACAGGTTACTTCGCCCAGAGGGTTGGATTATAATTCGCGACACTATTCCTTTAATAGAATCAGCTAGAGTCTTAGCAGCCCAGCTGAAATGGGAAGCAAGAGTGATCGAAATCGAAAGTAACAGCGAGGAGAAACTCCTGATATGCCAGAAACCTTTCTTCAAGAAACATGCAATCTAA
Protein sequence

>Msa0731770

MSRPLHRGVSGTRVPENINDDTWDSQSKDKSEKDDFDRRGSSDHTPLALRSPLKLLFSDKENGFASDPISVGSPRSRFKLMMFLVKFSLVFIVVFALVGSFLWTLNLSSSSRGRVYHGYRRLQEKLVSDLLDIGEISRGASRWKELESCSPELENFVPCFNVSDGNEFERKCEYEQSQNCLVLPPVNYKVPLRWPTGKDVIWVANVKITAQEVLSSGSLTKRMMMLDEEQISFRSASHMFDGVEDYSHQIAEMIGLRNESSFIQAGIRTVLDIGCGYGSFGAHLFDSQILTLCIANYEPSGSQVQLTLERGLPAMIASFTSKQLPYPSLSFDMLHCARCGIDWDQKDGNLLIEADRLLRPGGYFVWTSPLTNARNKENQKRWKIVHDFTENLCWDMLSQQDETVVFKKASKKNCYASRKKGSRPLCGRGLDVESPYYRELQNCIGGTQTRRWLSIEKREKWPSRANLNKNELAIHGLLPDELGEDSDSWKAAVQNYWSLLSPVIFSDHPKRPGDEDPSPPYNMFRNVLDMNANFGGFNSALLQARKSVWVMNVVPRTGPNYLPLIQDRGFVGLLHDWCEAFPTYPRTYDLVHAAGILSLEFSQPLRCTMLDLFIEIDRLLRPEGWIIIRDTIPLIESARVLAAQLKWEARVIEIESNSEEKLLICQKPFFKKHAI*