AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0771920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0771920 MtrunA17_Chr5g0426281 99.112 676 4 2 1 675 1 675 0.0 1378
Msa0771920 MtrunA17_Chr3g0115931 76.768 693 141 4 1 674 1 692 0.0 1119
Msa0771920 MtrunA17_Chr4g0043121 47.619 420 194 8 74 476 15 425 1.08e-133 400
Msa0771920 MtrunA17_Chr1g0187601 37.409 548 300 10 144 670 89 614 1.43e-118 367
Msa0771920 MtrunA17_Chr1g0167381 37.739 522 285 10 144 648 90 588 1.97e-115 359
Msa0771920 MtrunA17_Chr1g0183721 34.043 611 352 13 72 667 8 582 2.60e-112 350
Msa0771920 MtrunA17_Chr3g0112341 33.702 543 321 12 144 671 151 669 3.54e-104 331
Msa0771920 MtrunA17_Chr7g0246681 33.213 554 322 13 136 671 65 588 4.27e-97 310
Msa0771920 MtrunA17_Chr1g0159741 35.294 527 311 14 151 669 154 658 3.47e-96 310
Msa0771920 MtrunA17_Chr5g0435751 32.096 539 307 11 144 667 123 617 1.06e-95 308
Msa0771920 MtrunA17_Chr1g0203741 31.811 635 348 21 81 670 23 617 3.39e-94 304
Msa0771920 MtrunA17_Chr8g0350351 32.228 543 324 10 144 670 86 600 8.22e-94 302
Msa0771920 MtrunA17_Chr8g0350391 32.155 566 315 16 140 670 99 630 3.11e-93 301
Msa0771920 MtrunA17_Chr1g0171781 34.854 548 304 13 146 670 86 603 4.43e-93 300
Msa0771920 MtrunA17_Chr6g0472571 32.973 555 311 17 149 674 108 630 1.21e-92 300
Msa0771920 MtrunA17_Chr8g0388881 31.551 561 322 17 144 674 96 624 7.04e-92 298
Msa0771920 MtrunA17_Chr5g0437501 32.197 528 295 14 169 675 125 610 1.48e-91 296
Msa0771920 MtrunA17_Chr8g0369481 31.365 542 320 13 149 667 73 585 4.89e-91 295
Msa0771920 MtrunA17_Chr5g0409411 32.541 547 315 14 149 671 75 591 5.78e-91 295
Msa0771920 MtrunA17_Chr3g0130381 33.100 571 311 18 132 671 247 777 7.40e-91 299
Msa0771920 MtrunA17_Chr4g0043131 66.848 184 59 1 489 672 4 185 1.52e-90 279
Msa0771920 MtrunA17_Chr3g0125511 33.151 549 295 15 156 671 234 743 2.45e-90 297
Msa0771920 MtrunA17_Chr3g0113981 31.881 505 297 12 175 671 204 669 2.73e-87 287
Msa0771920 MtrunA17_Chr4g0055031 31.327 565 321 19 136 670 76 603 3.77e-87 285
Msa0771920 MtrunA17_Chr7g0246701 32.246 552 314 18 149 670 104 625 1.17e-86 284
Msa0771920 MtrunA17_Chr7g0214551 32.246 552 311 14 140 660 37 556 1.46e-86 282
Msa0771920 MtrunA17_Chr8g0384431 32.830 530 298 15 151 656 301 796 9.94e-85 283
Msa0771920 MtrunA17_Chr5g0416991 30.212 566 332 16 132 670 70 599 4.79e-84 276
Msa0771920 MtrunA17_Chr8g0361791 30.212 566 333 14 132 670 70 600 7.45e-84 276
Msa0771920 MtrunA17_Chr3g0092501 30.505 554 319 17 144 670 83 597 1.89e-82 272
Msa0771920 MtrunA17_Chr8g0372471 32.108 517 302 13 169 671 410 891 1.23e-80 274
Msa0771920 MtrunA17_Chr1g0155141 31.227 554 306 19 142 671 198 700 4.47e-78 263
Msa0771920 MtrunA17_Chr5g0404761 30.897 301 168 9 388 675 4 277 6.83e-41 150
Msa0771920 MtrunA17_Chr5g0404771 36.406 217 127 5 169 383 353 560 1.33e-36 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0771920 AT1G78240.1 67.579 694 196 8 1 675 1 684 0.0 956
Msa0771920 AT1G78240.2 67.579 694 196 8 1 675 1 684 0.0 956
Msa0771920 AT1G13860.4 52.053 609 276 8 70 672 5 603 0.0 660
Msa0771920 AT1G13860.3 52.053 609 276 8 70 672 5 603 0.0 660
Msa0771920 AT1G13860.1 52.053 609 276 8 70 672 5 603 0.0 660
Msa0771920 AT1G13860.5 52.053 609 276 8 70 672 5 603 0.0 660
Msa0771920 AT2G03480.1 51.378 617 265 10 70 672 11 606 0.0 634
Msa0771920 AT2G03480.2 50.567 617 259 9 70 672 11 595 0.0 624
Msa0771920 AT1G13860.2 56.608 454 185 6 224 672 1 447 0.0 548
Msa0771920 AT2G03480.3 47.981 421 199 8 70 476 11 425 1.03e-127 385
Msa0771920 AT1G04430.1 36.738 607 330 12 84 660 10 592 3.90e-116 362
Msa0771920 AT1G04430.3 36.738 607 330 12 84 660 10 592 3.90e-116 362
Msa0771920 AT1G04430.2 36.738 607 330 12 84 660 10 592 3.90e-116 362
Msa0771920 AT3G23300.2 36.581 544 299 11 149 670 82 601 8.28e-115 358
Msa0771920 AT3G23300.1 36.581 544 299 11 149 670 82 601 8.28e-115 358
Msa0771920 AT5G14430.1 36.625 557 303 11 144 675 78 609 9.36e-112 350
Msa0771920 AT4G14360.1 36.822 516 288 9 149 648 79 572 4.18e-111 348
Msa0771920 AT4G14360.2 36.822 516 288 9 149 648 79 572 4.18e-111 348
Msa0771920 AT5G14430.2 36.266 557 305 11 144 675 78 609 2.38e-110 346
Msa0771920 AT5G06050.1 35.531 546 303 13 144 669 147 663 3.89e-109 345
Msa0771920 AT1G77260.1 34.254 543 308 11 144 667 141 653 2.63e-102 327
Msa0771920 AT2G39750.1 32.364 550 333 12 137 671 168 693 9.22e-102 326
Msa0771920 AT5G04060.1 33.966 527 308 11 153 670 102 597 7.87e-98 313
Msa0771920 AT3G10200.1 35.209 551 297 15 146 670 72 588 8.16e-98 313
Msa0771920 AT4G19120.1 32.982 570 318 16 127 670 59 590 3.46e-96 309
Msa0771920 AT4G19120.2 32.982 570 318 16 127 670 59 590 3.46e-96 309
Msa0771920 AT1G31850.1 32.844 545 310 16 149 667 79 593 1.21e-95 307
Msa0771920 AT1G31850.2 32.844 545 310 16 149 667 79 593 1.21e-95 307
Msa0771920 AT1G31850.4 32.844 545 310 16 149 667 79 593 1.21e-95 307
Msa0771920 AT1G31850.3 32.844 545 310 16 149 667 79 593 1.21e-95 307
Msa0771920 AT4G00740.1 32.573 614 331 16 89 671 33 594 4.10e-95 306
Msa0771920 AT4G00740.2 32.573 614 331 16 89 671 33 594 4.10e-95 306
Msa0771920 AT1G33170.1 32.258 558 316 17 144 670 108 634 1.03e-92 301
Msa0771920 AT4G10440.1 31.598 557 320 16 144 670 91 616 3.10e-92 299
Msa0771920 AT2G43200.2 34.457 534 295 15 149 658 94 596 5.77e-91 295
Msa0771920 AT2G43200.1 34.457 534 295 15 149 658 94 596 5.77e-91 295
Msa0771920 AT4G00750.1 32.865 569 314 19 141 674 91 626 6.74e-91 296
Msa0771920 AT2G45750.1 33.273 550 297 15 148 661 89 604 1.30e-90 295
Msa0771920 AT2G34300.2 32.061 524 296 14 169 671 274 758 2.27e-88 293
Msa0771920 AT2G34300.3 32.061 524 296 14 169 671 274 758 2.27e-88 293
Msa0771920 AT2G34300.1 32.061 524 296 14 169 671 274 758 2.27e-88 293
Msa0771920 AT1G26850.2 31.306 559 326 14 140 670 80 608 4.58e-88 288
Msa0771920 AT1G26850.1 31.306 559 326 14 140 670 80 608 4.58e-88 288
Msa0771920 AT2G40280.1 30.605 562 333 16 123 671 65 582 4.58e-88 287
Msa0771920 AT5G64030.1 32.051 546 314 16 155 675 308 821 1.78e-87 291
Msa0771920 AT1G29470.1 33.333 519 296 14 169 671 274 758 7.17e-87 288
Msa0771920 AT1G29470.2 33.333 519 296 14 169 671 274 758 7.17e-87 288
Msa0771920 AT3G56080.1 31.471 537 292 15 143 651 107 595 9.98e-87 284
Msa0771920 AT3G10200.2 35.130 501 268 14 146 623 72 538 1.60e-86 283
Msa0771920 AT4G18030.1 31.341 552 319 16 146 670 85 603 2.02e-86 283
Msa0771920 AT3G51070.1 32.051 546 306 15 155 671 381 890 1.84e-85 287
Msa0771920 AT1G19430.1 31.481 540 300 17 155 671 231 723 8.61e-76 258
Msa0771920 AT1G19430.3 31.481 540 300 17 155 671 231 723 8.61e-76 258
Msa0771920 AT3G56080.2 31.612 484 258 13 143 598 107 545 4.07e-75 251
Msa0771920 AT3G51070.2 32.981 473 257 14 155 598 381 822 2.21e-74 256
Msa0771920 AT4G19120.3 30.252 476 272 14 127 577 59 499 1.21e-66 228
Msa0771920 AT1G26850.3 29.025 441 261 11 140 555 80 493 2.24e-54 194
Msa0771920 AT1G19430.2 29.440 411 216 16 155 537 231 595 2.59e-38 150

Find 195 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTGGAAAAGATGTTATT+TGG 0.156678 5_2:+45653114 Msa0771920:CDS
TTTATGATAATTATGGAAAT+TGG 0.166001 5_2:-45656808 None:intergenic
TAAACACAATTATTTATTAT+TGG 0.170520 5_2:+45657008 Msa0771920:three_prime_UTR
ACTCTAGCTGATTCTATTAA+AGG 0.186941 5_2:-45656625 None:intergenic
GCAGAACTTTATGATAATTA+TGG 0.199837 5_2:-45656815 None:intergenic
ATAAATAATTCTATGATATA+GGG 0.207007 5_2:-45657098 None:intergenic
CCTAAACTCAAATACCTTTC+TGG 0.213244 5_2:-45654286 None:intergenic
GTTTCTTGAAGAAAGGTTTC+TGG 0.232166 5_2:-45656723 None:intergenic
GCACAAGAGGTTCTTTCTTC+TGG 0.244322 5_2:+45653158 Msa0771920:CDS
TGGATATTGGTGAGATTTCT+AGG 0.258788 5_2:+45652922 Msa0771920:CDS
CTGGAGCTGGATTCTCAAAA+AGG 0.266365 5_2:+45652364 Msa0771920:five_prime_UTR
AATAAATAATTCTATGATAT+AGG 0.269595 5_2:-45657099 None:intergenic
AATTGTTTAGTTTGATCTAA+TGG 0.273439 5_2:-45651590 None:intergenic
CCTCTACATCGAGGTGTTTC+CGG 0.278716 5_2:+45652540 Msa0771920:CDS
AAACACAATTATTTATTATT+GGG 0.280121 5_2:+45657009 Msa0771920:three_prime_UTR
CTCTTGCTTCCCATTTCAGC+TGG 0.280333 5_2:-45656657 None:intergenic
TATTATGGTATAGTTTCTTT+AGG 0.298118 5_2:-45656770 None:intergenic
ATCAACTTAAAACGGCTTCT+TGG 0.300302 5_2:-45652750 None:intergenic
GACCGGGTGGATACTTTGTT+TGG 0.300878 5_2:+45654433 Msa0771920:CDS
AGCAAAACACAAGAGGTTAA+TGG 0.309048 5_2:-45651889 None:intergenic
TCCTCGTCACCGGGCCTCTT+CGG 0.310023 5_2:-45655059 None:intergenic
AGAGGAACTTTGTAATTAAC+TGG 0.318130 5_2:-45653083 None:intergenic
AGAAAGGTTTCTGGCATATC+AGG 0.322309 5_2:-45656714 None:intergenic
AAGCAGCAGTGCAAAATTAT+TGG 0.326097 5_2:+45655003 Msa0771920:CDS
GTTTCAGATTTGTTGGATAT+TGG 0.327113 5_2:+45652909 Msa0771920:CDS
GAAACTTGTTTCAGATTTGT+TGG 0.328549 5_2:+45652902 Msa0771920:CDS
AAATGAATATATGTATATTA+TGG 0.332547 5_2:-45656785 None:intergenic
TCTTAGCAGCCCAGCTGAAA+TGG 0.337346 5_2:+45656647 Msa0771920:CDS
ATTACAAAGTTCCTCTTAGA+TGG 0.341609 5_2:+45653090 Msa0771920:CDS
AGATAGTTAGGTCCAGTTCT+TGG 0.345037 5_2:-45655197 None:intergenic
TACTGGAAAAGATGTTATTT+GGG 0.346347 5_2:+45653115 Msa0771920:CDS
TCAGCCTCTCATATGTTTGA+TGG 0.353415 5_2:+45653439 Msa0771920:CDS
CATCAGATTGCTGAAATGAT+TGG 0.365226 5_2:+45653478 Msa0771920:CDS
CTTGGTGAGCCAACACTGAT+TGG 0.369399 5_2:-45652732 None:intergenic
GGTTGTGGCTATGGTAGCTT+TGG 0.380939 5_2:+45654074 Msa0771920:CDS
TGAGCAGAGTCAAAATTGTT+TGG 0.393888 5_2:+45653052 Msa0771920:CDS
TAGACTTGTGATTCTTCAAC+TGG 0.394563 5_2:+45652345 Msa0771920:intron
ATCTGTTCATTGAAATTGAC+AGG 0.398613 5_2:+45655817 Msa0771920:CDS
GATAGTTAGGTCCAGTTCTT+GGG 0.401757 5_2:-45655196 None:intergenic
AGTAAACAACACTCTTGTAT+TGG 0.408596 5_2:+45652418 Msa0771920:five_prime_UTR
AAGGAGACCTCAATGCTAAA+GGG 0.408924 5_2:-45652665 None:intergenic
TGGATCAAGGGAAGATAGTT+AGG 0.412196 5_2:-45655209 None:intergenic
TCAAAAGACAGAGATGGATA+TGG 0.414142 5_2:-45654227 None:intergenic
TACATAACAATTACCATGTA+TGG 0.417975 5_2:-45654863 None:intergenic
GTGCAAGATGTGGCATTGAT+TGG 0.420971 5_2:+45654261 Msa0771920:CDS
TGCTTCAAGGTGGAAAGAAT+TGG 0.422058 5_2:+45652947 Msa0771920:CDS
GGATGATCAGAAAATATTAC+AGG 0.422300 5_2:-45655038 None:intergenic
ATGAACGTGGTCCCAAGAAC+TGG 0.422464 5_2:+45655185 Msa0771920:CDS
AACTATGTCGGTGATGTGTC+GGG 0.425439 5_2:-45651532 None:intergenic
TGTGATTCTTCAACTGGAGC+TGG 0.427549 5_2:+45652351 Msa0771920:five_prime_UTR
GGATATTGGTGAGATTTCTA+GGG 0.429174 5_2:+45652923 Msa0771920:CDS
ATTGCATGTTTCTTGAAGAA+AGG 0.436409 5_2:-45656730 None:intergenic
CGGAGAAGGGTCCTCGTCAC+CGG 0.441507 5_2:-45655069 None:intergenic
GGAATCTTGTTCTCCTGAGT+TGG 0.443168 5_2:+45652968 Msa0771920:CDS
AAGCAGCTGACAAAGAATAT+TGG 0.444728 5_2:+45656946 Msa0771920:three_prime_UTR
TATGACTTGGTGCATGCAGC+AGG 0.446091 5_2:+45655747 Msa0771920:CDS
GTCGAATGATTAATGTGCAT+TGG 0.448491 5_2:-45651823 None:intergenic
GTCGTGTTTACCATGGTTAT+AGG 0.449066 5_2:+45652868 Msa0771920:CDS
ACATTTCTGAACATGTTGTA+AGG 0.452439 5_2:-45655092 None:intergenic
GTTCCTCTTAGATGGCCTAC+TGG 0.452619 5_2:+45653098 Msa0771920:CDS
GAGTCCTCACCAAGTTCATC+AGG 0.457244 5_2:-45654969 None:intergenic
CGCCGACAAAACCTCGGTCC+TGG 0.457781 5_2:-45655229 None:intergenic
CTTAGCAGCCCAGCTGAAAT+GGG 0.459246 5_2:+45656648 Msa0771920:CDS
TAAGTGGCTGGGAAAATTCA+AGG 0.460048 5_2:-45655779 None:intergenic
GCATGGTGCACCTAAGTGGC+TGG 0.460368 5_2:-45655791 None:intergenic
AAAACCTCGGTCCTGGATCA+AGG 0.462140 5_2:-45655222 None:intergenic
TGCTGCATGCACCAAGTCAT+AGG 0.464175 5_2:-45655745 None:intergenic
AACCATTAAACAAAACTACT+AGG 0.468630 5_2:+45651943 Msa0771920:five_prime_UTR
CAGACACTGTCTGCTCGCTT+CGG 0.470208 5_2:-45651681 None:intergenic
ATACAAAGTGAGGATTGAAA+AGG 0.474509 5_2:+45656839 Msa0771920:three_prime_UTR
TTCAATTGAAAGCCAGCGGC+GGG 0.475046 5_2:-45654791 None:intergenic
TCTTGCTTCCCATTTCAGCT+GGG 0.475890 5_2:-45656656 None:intergenic
AAAACATCATCAACTTAAAA+CGG 0.476140 5_2:-45652758 None:intergenic
CTAGACATAGGTTGTGGCTA+TGG 0.482030 5_2:+45654065 Msa0771920:CDS
CCGATGGAAATGAGTTTGAA+AGG 0.483849 5_2:+45653018 Msa0771920:CDS
GACATGAATGCTAACTTTGG+TGG 0.484582 5_2:+45655119 Msa0771920:CDS
TTTCCAGAAAGAAAGGTTCT+CGG 0.484738 5_2:+45654692 Msa0771920:intron
AATTTGTCGTCTTCGTCAAG+AGG 0.486090 5_2:+45652846 Msa0771920:CDS
AAAGGAGACCTCAATGCTAA+AGG 0.488766 5_2:-45652666 None:intergenic
GTGAAAGAAGCAATCATAGC+AGG 0.489787 5_2:-45654191 None:intergenic
ACTTTACCGAAAATCTGTGC+TGG 0.491547 5_2:+45654517 Msa0771920:CDS
GCATCTGATCCAATCAGTGT+TGG 0.492382 5_2:+45652723 Msa0771920:CDS
ACCATTAAACAAAACTACTA+GGG 0.493060 5_2:+45651944 Msa0771920:five_prime_UTR
AGATTTCTAGGGGTGCTTCA+AGG 0.496300 5_2:+45652934 Msa0771920:CDS
TCTCGGCCCCTGTGTGGTAG+AGG 0.498322 5_2:+45654709 Msa0771920:CDS
TAAATAATTCTATGATATAG+GGG 0.498850 5_2:-45657097 None:intergenic
TGCAGCCGTAAGGCGTGCAT+AGG 0.500466 5_2:+45656905 Msa0771920:three_prime_UTR
CTTGAAGTCTCCTATAACCA+TGG 0.505745 5_2:-45652878 None:intergenic
AAAAGAATTGTTATACATCA+AGG 0.506775 5_2:+45654589 Msa0771920:CDS
TGCAAGATGTGGCATTGATT+GGG 0.507894 5_2:+45654262 Msa0771920:CDS
CCTTGCTTTAATGTTTCCGA+TGG 0.509748 5_2:+45653002 Msa0771920:CDS
TGCACCAAGTCATAGGTTCT+CGG 0.510253 5_2:-45655738 None:intergenic
TCTGAAAACAACAACTTCAA+AGG 0.510267 5_2:-45652684 None:intergenic
GCACCAAGTCATAGGTTCTC+GGG 0.511240 5_2:-45655737 None:intergenic
AACATGTTGTAAGGCGGAGA+AGG 0.511703 5_2:-45655083 None:intergenic
AAGTAATAAGAGAAGGAAGC+AGG 0.513582 5_2:-45651740 None:intergenic
ATCACACCCCTTTAGCATTG+AGG 0.514349 5_2:+45652658 Msa0771920:CDS
ATGACCCTATGCACGCCTTA+CGG 0.516248 5_2:-45656910 None:intergenic
ATTGCAAACTATGAGCCTTC+TGG 0.516898 5_2:+45654134 Msa0771920:CDS
TCTGATCATCCGAAGAGGCC+CGG 0.518115 5_2:+45655050 Msa0771920:CDS
TCGGTGATGTGTCGGGGTCA+AGG 0.518558 5_2:-45651525 None:intergenic
CCTTTCAAACTCATTTCCAT+CGG 0.521679 5_2:-45653018 None:intergenic
TGCACGCCTTACGGCTGCAC+AGG 0.523599 5_2:-45656901 None:intergenic
GCTTCTCCTGTGCAGCCGTA+AGG 0.525312 5_2:+45656895 Msa0771920:three_prime_UTR
CAATTGCAGGATGATGATGT+TGG 0.529476 5_2:+45653393 Msa0771920:intron
AAAACATCAATGATGATACA+TGG 0.529523 5_2:+45652577 Msa0771920:CDS
TCAAAATTTGACTGTCAAAG+AGG 0.532274 5_2:-45654103 None:intergenic
GAGGAACACAGACCCGCCGC+TGG 0.534244 5_2:+45654779 Msa0771920:CDS
TTGGTGAGGACTCTGACAGC+TGG 0.536321 5_2:+45654979 Msa0771920:CDS
GAACTATGTCGGTGATGTGT+CGG 0.537001 5_2:-45651533 None:intergenic
GAATCTTCCTTCATACAAGC+TGG 0.538007 5_2:+45653511 Msa0771920:CDS
TACAAAGTGAGGATTGAAAA+GGG 0.538274 5_2:+45656840 Msa0771920:three_prime_UTR
AAGAATGAGTTAGCCATACA+TGG 0.539849 5_2:+45654850 Msa0771920:CDS
GGATTGCTGCCTGATGAACT+TGG 0.541826 5_2:+45654960 Msa0771920:intron
GCAGCCGTAAGGCGTGCATA+GGG 0.545092 5_2:+45656906 Msa0771920:three_prime_UTR
CAGAAAATATTACAGGCGAC+AGG 0.549480 5_2:-45655031 None:intergenic
TAACTATCTTCCCTTGATCC+AGG 0.552006 5_2:+45655211 Msa0771920:CDS
TGTGTTGAAAGAGTATGTCT+AGG 0.552077 5_2:+45652517 Msa0771920:exon
CATCGAGACCTCTACCACAC+AGG 0.553386 5_2:-45654717 None:intergenic
TTCTTTGTCAGCTGCTTGTG+TGG 0.553823 5_2:-45656940 None:intergenic
TTTCCAGTAGGCCATCTAAG+AGG 0.554429 5_2:-45653101 None:intergenic
TGTTTCCGGTACTCGTGTAC+CGG 0.556249 5_2:+45652554 Msa0771920:CDS
CTTTACCGAAAATCTGTGCT+GGG 0.556623 5_2:+45654518 Msa0771920:CDS
CATATGAGAGGCTGAACGAA+AGG 0.563007 5_2:-45653431 None:intergenic
TCCGAAGAGGCCCGGTGACG+AGG 0.564321 5_2:+45655058 Msa0771920:CDS
TTGTTCAAATTAGCCCGAGA+AGG 0.564574 5_2:-45654829 None:intergenic
TTGCTACAAGTAATAAGAGA+AGG 0.568935 5_2:-45651747 None:intergenic
TTAGACATGAATGCTAACTT+TGG 0.569291 5_2:+45655116 Msa0771920:CDS
GGAGAAGGGTCCTCGTCACC+GGG 0.572769 5_2:-45655068 None:intergenic
AAACCTCGGTCCTGGATCAA+GGG 0.573765 5_2:-45655221 None:intergenic
TCATAGGTTCTCGGGTATGT+CGG 0.578308 5_2:-45655729 None:intergenic
TTCAATGAACAGATCAAGCA+TGG 0.580708 5_2:-45655808 None:intergenic
CTTGCAAAGCAAAACACAAG+AGG 0.581432 5_2:-45651896 None:intergenic
CATGGTGCACCTAAGTGGCT+GGG 0.582332 5_2:-45655790 None:intergenic
CTTCTGGAAGCTTGACCAAG+AGG 0.586011 5_2:+45653174 Msa0771920:CDS
GCCACAACCTATGTCTAGTA+CGG 0.587892 5_2:-45654060 None:intergenic
ACAAGGAGAATCAGAAAAGG+TGG 0.588315 5_2:+45654481 Msa0771920:CDS
ACTTACACCAGCTTGTATGA+AGG 0.590478 5_2:-45653518 None:intergenic
ACAGTGTCTGTGCTCACGAT+CGG 0.591269 5_2:+45651694 Msa0771920:five_prime_UTR
CCATCGGAAACATTAAAGCA+AGG 0.593228 5_2:-45653002 None:intergenic
ATTCGAACCGTACTAGACAT+AGG 0.593344 5_2:+45654053 Msa0771920:CDS
CCGGAAACACCTCGATGTAG+AGG 0.593760 5_2:-45652540 None:intergenic
TCAAGCATGGTGCACCTAAG+TGG 0.595533 5_2:-45655795 None:intergenic
AACATATCAAAAGACAGAGA+TGG 0.597981 5_2:-45654233 None:intergenic
GATATTGGTGAGATTTCTAG+GGG 0.598200 5_2:+45652924 Msa0771920:CDS
TGTGAAAATCACTGCACAAG+AGG 0.598848 5_2:+45653145 Msa0771920:CDS
AGGTTTAGGATAAGAGTGAA+CGG 0.600037 5_2:-45651490 None:intergenic
GAACTGCAAAACTGCATAGG+AGG 0.600256 5_2:+45654760 Msa0771920:CDS
GTAACAAGGAGAATCAGAAA+AGG 0.601806 5_2:+45654478 Msa0771920:CDS
TTGTTACGAGCATTTGTAAG+CGG 0.602642 5_2:-45654462 None:intergenic
GTCAAGAACATGAACTATGT+CGG 0.605607 5_2:-45651544 None:intergenic
GGCATTGATTGGGACCAGAA+AGG 0.607628 5_2:+45654272 Msa0771920:CDS
AAATAATTCTATGATATAGG+GGG 0.607799 5_2:-45657096 None:intergenic
TTTCAATTGAAAGCCAGCGG+CGG 0.609031 5_2:-45654792 None:intergenic
GCTTACAAATGCTCGTAACA+AGG 0.610328 5_2:+45654464 Msa0771920:CDS
AAACATCAATGATGATACAT+GGG 0.612157 5_2:+45652578 Msa0771920:CDS
GGTTCTCGGGTATGTCGGAA+AGG 0.613488 5_2:-45655724 None:intergenic
TCAAGAGGTCGTGTTTACCA+TGG 0.613690 5_2:+45652861 Msa0771920:CDS
TTACGGCTGCACAGGAGAAG+CGG 0.614675 5_2:-45656893 None:intergenic
CGCGAACTGCAAAACTGCAT+AGG 0.617218 5_2:+45654757 Msa0771920:CDS
ACATGTTGTAAGGCGGAGAA+GGG 0.618483 5_2:-45655082 None:intergenic
ATCGAGACCTCTACCACACA+GGG 0.618870 5_2:-45654716 None:intergenic
TTGTGTGGCCTCTAGGTGCG+AGG 0.619318 5_2:+45655701 Msa0771920:intron
TAAGTTGTTGCTCATTGTTG+TGG 0.621756 5_2:+45657047 Msa0771920:three_prime_UTR
AAGTTCTGCCATACAAAGTG+AGG 0.624339 5_2:+45656829 Msa0771920:three_prime_UTR
GGAACTTTGTAATTAACTGG+TGG 0.627180 5_2:-45653080 None:intergenic
AGGAGACCTCAATGCTAAAG+GGG 0.629846 5_2:-45652664 None:intergenic
AACTCCATCAAACATATGAG+AGG 0.634768 5_2:-45653443 None:intergenic
ATACCCGAGAACCTATGACT+TGG 0.638261 5_2:+45655734 Msa0771920:CDS
TTTCTAGGGGTGCTTCAAGG+TGG 0.639200 5_2:+45652937 Msa0771920:CDS
AAGTGGCTGGGAAAATTCAA+GGG 0.642516 5_2:-45655778 None:intergenic
CTTCCCTTGATCCAGGACCG+AGG 0.642864 5_2:+45655218 Msa0771920:CDS
GTCCAAACAAAGTATCCACC+CGG 0.644568 5_2:-45654435 None:intergenic
GCTGCCTGATGAACTTGGTG+AGG 0.645687 5_2:+45654965 Msa0771920:CDS
CGGCTGCACAGGAGAAGCGG+TGG 0.647779 5_2:-45656890 None:intergenic
ACCGTACTAGACATAGGTTG+TGG 0.648823 5_2:+45654059 Msa0771920:CDS
AAAGGTTCTCGGCCCCTGTG+TGG 0.650412 5_2:+45654703 Msa0771920:CDS
AGCTGAACTTGACTACCAGA+AGG 0.652030 5_2:-45654149 None:intergenic
ATGACTTGGTGCATGCAGCA+GGG 0.652344 5_2:+45655748 Msa0771920:CDS
GCAAAACGCCGACAAAACCT+CGG 0.659812 5_2:-45655235 None:intergenic
CCATTAAACAAAACTACTAG+GGG 0.669220 5_2:+45651945 Msa0771920:five_prime_UTR
GTTCAGCTTACTCTTGAGCG+AGG 0.669560 5_2:+45654164 Msa0771920:CDS
ATGTTACATTGTGCAAGATG+TGG 0.674130 5_2:+45654251 Msa0771920:CDS
TGACAGGTTACTTCGCCCAG+AGG 0.677454 5_2:+45655833 Msa0771920:CDS
TTTCTGAACATGTTGTAAGG+CGG 0.677618 5_2:-45655089 None:intergenic
ACGAGCATTTGTAAGCGGTG+AGG 0.680282 5_2:-45654457 None:intergenic
GCAAGCTAGAAAGTCTGTGT+GGG 0.695074 5_2:+45655160 Msa0771920:CDS
TGCAAGCTAGAAAGTCTGTG+TGG 0.704131 5_2:+45655159 Msa0771920:CDS
ACTATGTCGGTGATGTGTCG+GGG 0.707181 5_2:-45651531 None:intergenic
GTGTGGTAGAGGTCTCGATG+TGG 0.707920 5_2:+45654720 Msa0771920:CDS
CGAAATCGAAAGTAACAGCG+AGG 0.717535 5_2:+45656684 Msa0771920:CDS
GTCTGTGTGGGTAATGAACG+TGG 0.718175 5_2:+45655172 Msa0771920:CDS
ATGTCTAGGCCTCTACATCG+AGG 0.729495 5_2:+45652531 Msa0771920:CDS
GTGGTGTATAAAATGCTCAG+TGG 0.788427 5_2:+45657066 Msa0771920:three_prime_UTR
TCGAGACCTCTACCACACAG+GGG 0.811954 5_2:-45654715 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTCTTTTCATTT+TGG + chr5_2:45652317-45652336 Msa0771920:intron 10.0%
!! AAATGAATATATGTATATTA+TGG - chr5_2:45656788-45656807 None:intergenic 10.0%
!! TAAACACAATTATTTATTAT+TGG + chr5_2:45657008-45657027 Msa0771920:three_prime_UTR 10.0%
!! AAACACAATTATTTATTATT+GGG + chr5_2:45657009-45657028 Msa0771920:three_prime_UTR 10.0%
!!! TTTAAAAAACTTTTAGTACT+AGG + chr5_2:45651635-45651654 Msa0771920:five_prime_UTR 15.0%
!! ATTGAAAACTTTAAGTATAT+GGG - chr5_2:45652106-45652125 None:intergenic 15.0%
!! AATTGAAAACTTTAAGTATA+TGG - chr5_2:45652107-45652126 None:intergenic 15.0%
!!! CTTAAAGTTTTCAATTTTTT+TGG + chr5_2:45652111-45652130 Msa0771920:intron 15.0%
!!! TTTTCAATTTTTTTGGTTTT+TGG + chr5_2:45652118-45652137 Msa0771920:intron 15.0%
!!! AAATTTTTCTTATTGCTATT+AGG + chr5_2:45654939-45654958 Msa0771920:intron 15.0%
!!! GATAGTGAATTTTTTATTTT+AGG - chr5_2:45656001-45656020 None:intergenic 15.0%
!!! CATGATATTTTATAAAAGTT+TGG - chr5_2:45656232-45656251 None:intergenic 15.0%
!! TTTATGATAATTATGGAAAT+TGG - chr5_2:45656811-45656830 None:intergenic 15.0%
!!! AATTGTTTAGTTTGATCTAA+TGG - chr5_2:45651593-45651612 None:intergenic 20.0%
!! AAAATCACTATTCAATTCAA+TGG - chr5_2:45652026-45652045 None:intergenic 20.0%
!!! TTTTTGGTTTTTGGTTATAA+TGG + chr5_2:45652127-45652146 Msa0771920:intron 20.0%
!! ATATATATCCATTTCATTAC+TGG + chr5_2:45652156-45652175 Msa0771920:intron 20.0%
!! TATATATCCATTTCATTACT+GGG + chr5_2:45652157-45652176 Msa0771920:intron 20.0%
!!! AAAACTTTTTCTTCTGAAAA+GGG - chr5_2:45652254-45652273 None:intergenic 20.0%
!!! ATCTTTTTCTGATTTATCTT+TGG - chr5_2:45652613-45652632 None:intergenic 20.0%
!!! AAAAAGATGATTTTGATAGA+AGG + chr5_2:45652625-45652644 Msa0771920:CDS 20.0%
!!! AAAAGATGATTTTGATAGAA+GGG + chr5_2:45652626-45652645 Msa0771920:CDS 20.0%
!! AAAACATCATCAACTTAAAA+CGG - chr5_2:45652761-45652780 None:intergenic 20.0%
!!! TTTTAAGTTGATGATGTTTT+TGG + chr5_2:45652761-45652780 Msa0771920:CDS 20.0%
!! TATGTGATCTTTATTGAAAT+TGG + chr5_2:45653546-45653565 Msa0771920:intron 20.0%
!!! GCGTTAAATTTTTTTTTTTC+CGG + chr5_2:45653586-45653605 Msa0771920:intron 20.0%
!!! TTAAATTTTTTTTTTTCCGG+TGG + chr5_2:45653589-45653608 Msa0771920:intron 20.0%
!!! TTTTGACTTCTGATATATTT+TGG + chr5_2:45653936-45653955 Msa0771920:intron 20.0%
!! TATCAATCAAACAACATTTA+AGG - chr5_2:45654008-45654027 None:intergenic 20.0%
!!! GGATCTAAATTTTTTTTATC+TGG + chr5_2:45654307-45654326 Msa0771920:intron 20.0%
!! AAAAGAATTGTTATACATCA+AGG + chr5_2:45654589-45654608 Msa0771920:CDS 20.0%
!!! TTCCACAATCTTTTAAATAT+TGG + chr5_2:45655329-45655348 Msa0771920:intron 20.0%
!! TAATGTCAATTTCTTGATTA+TGG + chr5_2:45655411-45655430 Msa0771920:intron 20.0%
!!! CTATTATAATCATTTTTGTG+TGG + chr5_2:45655686-45655705 Msa0771920:intron 20.0%
!! TATTAAATTTACATACCTCT+GGG - chr5_2:45655851-45655870 None:intergenic 20.0%
!! TTATTAAATTTACATACCTC+TGG - chr5_2:45655852-45655871 None:intergenic 20.0%
!! CAATTTGTATTTCAAATTGT+AGG + chr5_2:45655929-45655948 Msa0771920:intron 20.0%
!!! CTTCTGAAGTTTTTTATTTT+AGG + chr5_2:45656111-45656130 Msa0771920:intron 20.0%
!!! ACTAACATGAAATTTTATAG+GGG - chr5_2:45656154-45656173 None:intergenic 20.0%
!!! GACTAACATGAAATTTTATA+GGG - chr5_2:45656155-45656174 None:intergenic 20.0%
!!! AGACTAACATGAAATTTTAT+AGG - chr5_2:45656156-45656175 None:intergenic 20.0%
!! ATAAAAGTTTGGTAAAAGTA+AGG - chr5_2:45656221-45656240 None:intergenic 20.0%
!! ACATTAGATATCTAATTTCA+GGG - chr5_2:45656367-45656386 None:intergenic 20.0%
!! TTAGATATCTAATGTCTATT+TGG + chr5_2:45656372-45656391 Msa0771920:intron 20.0%
!!! TTACTCTTGATTTTATCATT+TGG + chr5_2:45656537-45656556 Msa0771920:intron 20.0%
!! TATTATGGTATAGTTTCTTT+AGG - chr5_2:45656773-45656792 None:intergenic 20.0%
!! AAATAATTCTATGATATAGG+GGG - chr5_2:45657099-45657118 None:intergenic 20.0%
! AATGAGAGAGAAAAAAATGA+GGG - chr5_2:45651802-45651821 None:intergenic 25.0%
! AAATGAGAGAGAAAAAAATG+AGG - chr5_2:45651803-45651822 None:intergenic 25.0%
! AACCATTAAACAAAACTACT+AGG + chr5_2:45651943-45651962 Msa0771920:five_prime_UTR 25.0%
! ACCATTAAACAAAACTACTA+GGG + chr5_2:45651944-45651963 Msa0771920:five_prime_UTR 25.0%
! AAAACTTTAAGTATATGGGT+TGG - chr5_2:45652102-45652121 None:intergenic 25.0%
!!! CAAAACTTTTTCTTCTGAAA+AGG - chr5_2:45652255-45652274 None:intergenic 25.0%
! AAAACATCAATGATGATACA+TGG + chr5_2:45652577-45652596 Msa0771920:CDS 25.0%
! AAACATCAATGATGATACAT+GGG + chr5_2:45652578-45652597 Msa0771920:CDS 25.0%
!!! AAAGATGATTTTGATAGAAG+GGG + chr5_2:45652627-45652646 Msa0771920:CDS 25.0%
!! TTGTTTTCAGATAAAGAGAA+TGG + chr5_2:45652696-45652715 Msa0771920:CDS 25.0%
!! TACTGGAAAAGATGTTATTT+GGG + chr5_2:45653115-45653134 Msa0771920:CDS 25.0%
!!! TTTTTTTTCCTTTCAATTGC+AGG + chr5_2:45653380-45653399 Msa0771920:intron 25.0%
! TACGTGAAGTATAAATACAA+CGG - chr5_2:45653622-45653641 None:intergenic 25.0%
! GTATTTATACTTCACGTATT+TGG + chr5_2:45653624-45653643 Msa0771920:intron 25.0%
!! ATCAAACAACATTTAAGGTA+AGG - chr5_2:45654003-45654022 None:intergenic 25.0%
! GATTTAACACAGCAAAATTA+TGG - chr5_2:45654341-45654360 None:intergenic 25.0%
! ACAGGTAATACTAAGAATTA+GGG - chr5_2:45654667-45654686 None:intergenic 25.0%
! AACAGGTAATACTAAGAATT+AGG - chr5_2:45654668-45654687 None:intergenic 25.0%
!! TTCTTTCTGGAAATAAAAAC+AGG - chr5_2:45654685-45654704 None:intergenic 25.0%
!!! GTTTTTATTTCCAGAAAGAA+AGG + chr5_2:45654685-45654704 Msa0771920:intron 25.0%
! CAATTGAAAAAAGGGAAAAA+TGG + chr5_2:45654806-45654825 Msa0771920:CDS 25.0%
! TACATAACAATTACCATGTA+TGG - chr5_2:45654866-45654885 None:intergenic 25.0%
! GACCAATATTTAAAAGATTG+TGG - chr5_2:45655334-45655353 None:intergenic 25.0%
! CTCAAAAAACTAAGCTATAA+AGG - chr5_2:45655382-45655401 None:intergenic 25.0%
!!! CTTTATAGCTTAGTTTTTTG+AGG + chr5_2:45655380-45655399 Msa0771920:intron 25.0%
!!! CAGAATATTAGTTTTACACA+TGG - chr5_2:45655454-45655473 None:intergenic 25.0%
! GCTTGCAAAATATTTAAACT+TGG + chr5_2:45655575-45655594 Msa0771920:intron 25.0%
!!! TTTATTTTTCCACTTACCTT+TGG + chr5_2:45655609-45655628 Msa0771920:intron 25.0%
!!! TATTTCACTCTAAAACCAAA+TGG - chr5_2:45655908-45655927 None:intergenic 25.0%
!!! ACTATCACATCAGATTTTTT+GGG + chr5_2:45656015-45656034 Msa0771920:intron 25.0%
! GACATTAGATATCTAATTTC+AGG - chr5_2:45656368-45656387 None:intergenic 25.0%
!!! AAATTTGTTAAGTGTAAGGA+AGG - chr5_2:45656399-45656418 None:intergenic 25.0%
!!! TCGAAAATTTGTTAAGTGTA+AGG - chr5_2:45656403-45656422 None:intergenic 25.0%
! AGTTTGTCAAATAAATCTCA+TGG - chr5_2:45656426-45656445 None:intergenic 25.0%
!! TCTTGATTTTATCATTTGGA+AGG + chr5_2:45656541-45656560 Msa0771920:intron 25.0%
! GCAGAACTTTATGATAATTA+TGG - chr5_2:45656818-45656837 None:intergenic 25.0%
TTGCTACAAGTAATAAGAGA+AGG - chr5_2:45651750-45651769 None:intergenic 30.0%
CCATTAAACAAAACTACTAG+GGG + chr5_2:45651945-45651964 Msa0771920:five_prime_UTR 30.0%
AGTAAACAACACTCTTGTAT+TGG + chr5_2:45652418-45652437 Msa0771920:five_prime_UTR 30.0%
! GTATCATCATTGATGTTTTC+CGG - chr5_2:45652576-45652595 None:intergenic 30.0%
TCTGAAAACAACAACTTCAA+AGG - chr5_2:45652687-45652706 None:intergenic 30.0%
!!! ATAGTTGTTTTTGCTCTTGT+TGG + chr5_2:45652804-45652823 Msa0771920:CDS 30.0%
! GAAACTTGTTTCAGATTTGT+TGG + chr5_2:45652902-45652921 Msa0771920:CDS 30.0%
!! GTTTCAGATTTGTTGGATAT+TGG + chr5_2:45652909-45652928 Msa0771920:CDS 30.0%
AGAGGAACTTTGTAATTAAC+TGG - chr5_2:45653086-45653105 None:intergenic 30.0%
ATTACAAAGTTCCTCTTAGA+TGG + chr5_2:45653090-45653109 Msa0771920:CDS 30.0%
! CAAATAACATCTTTTCCAGT+AGG - chr5_2:45653116-45653135 None:intergenic 30.0%
CTACTGGAAAAGATGTTATT+TGG + chr5_2:45653114-45653133 Msa0771920:CDS 30.0%
CACATATTCCAGTAATATAC+AGG - chr5_2:45653257-45653276 None:intergenic 30.0%
CTGTATATTACTGGAATATG+TGG + chr5_2:45653255-45653274 Msa0771920:intron 30.0%
!!! TTTTAGCTTGTACTTTGTTC+AGG + chr5_2:45653876-45653895 Msa0771920:intron 30.0%
TCAAAATTTGACTGTCAAAG+AGG - chr5_2:45654106-45654125 None:intergenic 30.0%
AACATATCAAAAGACAGAGA+TGG - chr5_2:45654236-45654255 None:intergenic 30.0%
TAATTGACAACCACATTATG+TGG + chr5_2:45654369-45654388 Msa0771920:intron 30.0%
ATAAGTACATCATGTAAAGC+AGG - chr5_2:45654619-45654638 None:intergenic 30.0%
!!! TTTTTTCAATTGAAAGCCAG+CGG - chr5_2:45654798-45654817 None:intergenic 30.0%
! CTGGCTTTCAATTGAAAAAA+GGG + chr5_2:45654798-45654817 Msa0771920:CDS 30.0%
GGATGATCAGAAAATATTAC+AGG - chr5_2:45655041-45655060 None:intergenic 30.0%
ACATTTCTGAACATGTTGTA+AGG - chr5_2:45655095-45655114 None:intergenic 30.0%
TTAGACATGAATGCTAACTT+TGG + chr5_2:45655116-45655135 Msa0771920:CDS 30.0%
AGTAAATTTAGTACATGCCA+GGG - chr5_2:45655305-45655324 None:intergenic 30.0%
AAGTAAATTTAGTACATGCC+AGG - chr5_2:45655306-45655325 None:intergenic 30.0%
ATCTGTTCATTGAAATTGAC+AGG + chr5_2:45655817-45655836 Msa0771920:CDS 30.0%
!!! CACTATCACATCAGATTTTT+TGG + chr5_2:45656014-45656033 Msa0771920:intron 30.0%
! TCTAGATCAAATTAGTCTCT+TGG - chr5_2:45656069-45656088 None:intergenic 30.0%
! TCATGTTAGTCTCTTAGAAT+TGG + chr5_2:45656164-45656183 Msa0771920:intron 30.0%
TAAAAGTAAGGAACCAAGTT+GGG - chr5_2:45656209-45656228 None:intergenic 30.0%
!!! TGAACTTTTTTGCTAAGTGA+GGG - chr5_2:45656260-45656279 None:intergenic 30.0%
!!! ATGAACTTTTTTGCTAAGTG+AGG - chr5_2:45656261-45656280 None:intergenic 30.0%
CTTTCTGATAACATAACAGA+GGG - chr5_2:45656293-45656312 None:intergenic 30.0%
ACTTTCTGATAACATAACAG+AGG - chr5_2:45656294-45656313 None:intergenic 30.0%
! ACAAACTTTCTGAAAAGTGA+GGG + chr5_2:45656439-45656458 Msa0771920:intron 30.0%
! ACTCTAGCTGATTCTATTAA+AGG - chr5_2:45656628-45656647 None:intergenic 30.0%
ATTGCATGTTTCTTGAAGAA+AGG - chr5_2:45656733-45656752 None:intergenic 30.0%
! TTTTCAATCCTCACTTTGTA+TGG - chr5_2:45656840-45656859 None:intergenic 30.0%
ATACAAAGTGAGGATTGAAA+AGG + chr5_2:45656839-45656858 Msa0771920:three_prime_UTR 30.0%
TACAAAGTGAGGATTGAAAA+GGG + chr5_2:45656840-45656859 Msa0771920:three_prime_UTR 30.0%
GGAAGAAGAAAAAACAATAG+AGG + chr5_2:45656861-45656880 Msa0771920:three_prime_UTR 30.0%
! AGGTTTAGGATAAGAGTGAA+CGG - chr5_2:45651493-45651512 None:intergenic 35.0%
!!! GGTTTTAAGTGCTTAGGTTT+AGG - chr5_2:45651507-45651526 None:intergenic 35.0%
GTCAAGAACATGAACTATGT+CGG - chr5_2:45651547-45651566 None:intergenic 35.0%
AAGTAATAAGAGAAGGAAGC+AGG - chr5_2:45651743-45651762 None:intergenic 35.0%
GTCGAATGATTAATGTGCAT+TGG - chr5_2:45651826-45651845 None:intergenic 35.0%
AGCAAAACACAAGAGGTTAA+TGG - chr5_2:45651892-45651911 None:intergenic 35.0%
!!! CCCCTAGTAGTTTTGTTTAA+TGG - chr5_2:45651948-45651967 None:intergenic 35.0%
TCCGTGATTTATATCAGATG+CGG + chr5_2:45652180-45652199 Msa0771920:intron 35.0%
ACCGCATCTGATATAAATCA+CGG - chr5_2:45652184-45652203 None:intergenic 35.0%
GAAAAGGGAATCAAAAACAG+AGG - chr5_2:45652239-45652258 None:intergenic 35.0%
TAGACTTGTGATTCTTCAAC+TGG + chr5_2:45652345-45652364 Msa0771920:intron 35.0%
! TGTGTTGAAAGAGTATGTCT+AGG + chr5_2:45652517-45652536 Msa0771920:exon 35.0%
ATCAACTTAAAACGGCTTCT+TGG - chr5_2:45652753-45652772 None:intergenic 35.0%
!!! CTCTTGTTGGATCTTTTTTG+TGG + chr5_2:45652817-45652836 Msa0771920:CDS 35.0%
TGGATATTGGTGAGATTTCT+AGG + chr5_2:45652922-45652941 Msa0771920:CDS 35.0%
GGATATTGGTGAGATTTCTA+GGG + chr5_2:45652923-45652942 Msa0771920:CDS 35.0%
! GATATTGGTGAGATTTCTAG+GGG + chr5_2:45652924-45652943 Msa0771920:CDS 35.0%
! GGAACAAAATTTTCCAACTC+AGG - chr5_2:45652984-45653003 None:intergenic 35.0%
CCTTTCAAACTCATTTCCAT+CGG - chr5_2:45653021-45653040 None:intergenic 35.0%
TGAGCAGAGTCAAAATTGTT+TGG + chr5_2:45653052-45653071 Msa0771920:CDS 35.0%
GGAACTTTGTAATTAACTGG+TGG - chr5_2:45653083-45653102 None:intergenic 35.0%
GTAACTTCATAACTGCGTTA+CGG + chr5_2:45653225-45653244 Msa0771920:intron 35.0%
TAACTTCATAACTGCGTTAC+GGG + chr5_2:45653226-45653245 Msa0771920:intron 35.0%
ATCATCATCCTGCAATTGAA+AGG - chr5_2:45653391-45653410 None:intergenic 35.0%
AACTCCATCAAACATATGAG+AGG - chr5_2:45653446-45653465 None:intergenic 35.0%
CATCAGATTGCTGAAATGAT+TGG + chr5_2:45653478-45653497 Msa0771920:CDS 35.0%
ATGTTGGGTTCAACGTATAT+AGG + chr5_2:45653657-45653676 Msa0771920:intron 35.0%
TGTTGGGTTCAACGTATATA+GGG + chr5_2:45653658-45653677 Msa0771920:intron 35.0%
TCAAAAGACAGAGATGGATA+TGG - chr5_2:45654230-45654249 None:intergenic 35.0%
ATGTTACATTGTGCAAGATG+TGG + chr5_2:45654251-45654270 Msa0771920:CDS 35.0%
CCTAAACTCAAATACCTTTC+TGG - chr5_2:45654289-45654308 None:intergenic 35.0%
!! CCAGAAAGGTATTTGAGTTT+AGG + chr5_2:45654286-45654305 Msa0771920:intron 35.0%
ACCACATTATGTGGAATAGA+TGG + chr5_2:45654378-45654397 Msa0771920:intron 35.0%
!!! AGCTGATAGACTTTTAAGAC+CGG + chr5_2:45654416-45654435 Msa0771920:CDS 35.0%
TTGTTACGAGCATTTGTAAG+CGG - chr5_2:45654465-45654484 None:intergenic 35.0%
GTAACAAGGAGAATCAGAAA+AGG + chr5_2:45654478-45654497 Msa0771920:CDS 35.0%
TTTCCAGAAAGAAAGGTTCT+CGG + chr5_2:45654692-45654711 Msa0771920:intron 35.0%
! TTTTGCAGTTCGCGATAATA+TGG - chr5_2:45654751-45654770 None:intergenic 35.0%
!! GCTGGCTTTCAATTGAAAAA+AGG + chr5_2:45654797-45654816 Msa0771920:CDS 35.0%
AAGAATGAGTTAGCCATACA+TGG + chr5_2:45654850-45654869 Msa0771920:CDS 35.0%
AAGCAGCAGTGCAAAATTAT+TGG + chr5_2:45655003-45655022 Msa0771920:CDS 35.0%
! TATTTTCTGATCATCCGAAG+AGG + chr5_2:45655045-45655064 Msa0771920:CDS 35.0%
TTTCTGAACATGTTGTAAGG+CGG - chr5_2:45655092-45655111 None:intergenic 35.0%
TTCAATGAACAGATCAAGCA+TGG - chr5_2:45655811-45655830 None:intergenic 35.0%
CTAAAACCAAATGGAAGGAA+AGG - chr5_2:45655899-45655918 None:intergenic 35.0%
!! TCACTCTAAAACCAAATGGA+AGG - chr5_2:45655904-45655923 None:intergenic 35.0%
! AGTCTCTTGGACACAATTTT+AGG - chr5_2:45656056-45656075 None:intergenic 35.0%
! TGTTAGTCTCTTAGAATTGG+TGG + chr5_2:45656167-45656186 Msa0771920:intron 35.0%
GTAAAAGTAAGGAACCAAGT+TGG - chr5_2:45656210-45656229 None:intergenic 35.0%
!!! GAACTTTTTTGCTAAGTGAG+GGG - chr5_2:45656259-45656278 None:intergenic 35.0%
GAAAGTTTGTCATGTCAGAT+TGG + chr5_2:45656308-45656327 Msa0771920:intron 35.0%
! GACAAACTTTCTGAAAAGTG+AGG + chr5_2:45656438-45656457 Msa0771920:intron 35.0%
GTTTCTTGAAGAAAGGTTTC+TGG - chr5_2:45656726-45656745 None:intergenic 35.0%
AAGCAGCTGACAAAGAATAT+TGG + chr5_2:45656946-45656965 Msa0771920:three_prime_UTR 35.0%
TAAGTTGTTGCTCATTGTTG+TGG + chr5_2:45657047-45657066 Msa0771920:three_prime_UTR 35.0%
!!! GGTCAAGGTTTTAAGTGCTT+AGG - chr5_2:45651513-45651532 None:intergenic 40.0%
CTTGCAAAGCAAAACACAAG+AGG - chr5_2:45651899-45651918 None:intergenic 40.0%
TGGAGCTGGATTCTCAAAAA+GGG + chr5_2:45652365-45652384 Msa0771920:five_prime_UTR 40.0%
AAGGAGACCTCAATGCTAAA+GGG - chr5_2:45652668-45652687 None:intergenic 40.0%
AAAGGAGACCTCAATGCTAA+AGG - chr5_2:45652669-45652688 None:intergenic 40.0%
AATTTGTCGTCTTCGTCAAG+AGG + chr5_2:45652846-45652865 Msa0771920:CDS 40.0%
GTCGTGTTTACCATGGTTAT+AGG + chr5_2:45652868-45652887 Msa0771920:CDS 40.0%
CTTGAAGTCTCCTATAACCA+TGG - chr5_2:45652881-45652900 None:intergenic 40.0%
TGCTTCAAGGTGGAAAGAAT+TGG + chr5_2:45652947-45652966 Msa0771920:CDS 40.0%
CCATCGGAAACATTAAAGCA+AGG - chr5_2:45653005-45653024 None:intergenic 40.0%
CCTTGCTTTAATGTTTCCGA+TGG + chr5_2:45653002-45653021 Msa0771920:CDS 40.0%
CCGATGGAAATGAGTTTGAA+AGG + chr5_2:45653018-45653037 Msa0771920:CDS 40.0%
TGTGAAAATCACTGCACAAG+AGG + chr5_2:45653145-45653164 Msa0771920:CDS 40.0%
GACACATGTTAGTTACCTCT+TGG - chr5_2:45653192-45653211 None:intergenic 40.0%
AACTTCATAACTGCGTTACG+GGG + chr5_2:45653227-45653246 Msa0771920:intron 40.0%
AATATCCGCAACCGTAATTG+CGG - chr5_2:45653323-45653342 None:intergenic 40.0%
! CAATTGCAGGATGATGATGT+TGG + chr5_2:45653393-45653412 Msa0771920:intron 40.0%
TCAGCCTCTCATATGTTTGA+TGG + chr5_2:45653439-45653458 Msa0771920:CDS 40.0%
GAATCTTCCTTCATACAAGC+TGG + chr5_2:45653511-45653530 Msa0771920:CDS 40.0%
ACTTACACCAGCTTGTATGA+AGG - chr5_2:45653521-45653540 None:intergenic 40.0%
ATACAACGGATAAAGACCAC+CGG - chr5_2:45653608-45653627 None:intergenic 40.0%
TTCACGTATTTGGTACACAC+TGG + chr5_2:45653634-45653653 Msa0771920:intron 40.0%
ATTTGGTACACACTGGATGT+TGG + chr5_2:45653641-45653660 Msa0771920:intron 40.0%
TTTGGTACACACTGGATGTT+GGG + chr5_2:45653642-45653661 Msa0771920:intron 40.0%
GTTGGGTTCAACGTATATAG+GGG + chr5_2:45653659-45653678 Msa0771920:intron 40.0%
TTGGGTTCAACGTATATAGG+GGG + chr5_2:45653660-45653679 Msa0771920:intron 40.0%
TAGTAGTCGCAGTTACAGTT+TGG + chr5_2:45653703-45653722 Msa0771920:intron 40.0%
CATCAAAAACCGTCATGTCT+TGG + chr5_2:45653786-45653805 Msa0771920:intron 40.0%
CAATATGGACCAAGACATGA+CGG - chr5_2:45653798-45653817 None:intergenic 40.0%
TCATGTCTTGGTCCATATTG+TGG + chr5_2:45653798-45653817 Msa0771920:intron 40.0%
AGTGTTTGCCAACCACAATA+TGG - chr5_2:45653813-45653832 None:intergenic 40.0%
GGTTCGAATCTGGAAATTTC+AGG - chr5_2:45654042-45654061 None:intergenic 40.0%
ATTCGAACCGTACTAGACAT+AGG + chr5_2:45654053-45654072 Msa0771920:CDS 40.0%
ATTGCAAACTATGAGCCTTC+TGG + chr5_2:45654134-45654153 Msa0771920:CDS 40.0%
GTGAAAGAAGCAATCATAGC+AGG - chr5_2:45654194-45654213 None:intergenic 40.0%
!! TGCAAGATGTGGCATTGATT+GGG + chr5_2:45654262-45654281 Msa0771920:CDS 40.0%
GCCATCTATTCCACATAATG+TGG - chr5_2:45654382-45654401 None:intergenic 40.0%
!!! GCTGATAGACTTTTAAGACC+GGG + chr5_2:45654417-45654436 Msa0771920:CDS 40.0%
GCTTACAAATGCTCGTAACA+AGG + chr5_2:45654464-45654483 Msa0771920:CDS 40.0%
ACAAGGAGAATCAGAAAAGG+TGG + chr5_2:45654481-45654500 Msa0771920:CDS 40.0%
ACTTTACCGAAAATCTGTGC+TGG + chr5_2:45654517-45654536 Msa0771920:CDS 40.0%
CTTTACCGAAAATCTGTGCT+GGG + chr5_2:45654518-45654537 Msa0771920:CDS 40.0%
AAAGGGAAAAATGGCCTTCT+CGG + chr5_2:45654815-45654834 Msa0771920:CDS 40.0%
TTGTTCAAATTAGCCCGAGA+AGG - chr5_2:45654832-45654851 None:intergenic 40.0%
CAGAAAATATTACAGGCGAC+AGG - chr5_2:45655034-45655053 None:intergenic 40.0%
GACATGAATGCTAACTTTGG+TGG + chr5_2:45655119-45655138 Msa0771920:CDS 40.0%
GATAGTTAGGTCCAGTTCTT+GGG - chr5_2:45655199-45655218 None:intergenic 40.0%
AGATAGTTAGGTCCAGTTCT+TGG - chr5_2:45655200-45655219 None:intergenic 40.0%
TGGATCAAGGGAAGATAGTT+AGG - chr5_2:45655212-45655231 None:intergenic 40.0%
TAACTATCTTCCCTTGATCC+AGG + chr5_2:45655211-45655230 Msa0771920:CDS 40.0%
TCCTTCCTCTTGTCCTTATA+TGG + chr5_2:45655276-45655295 Msa0771920:intron 40.0%
TCCATATAAGGACAAGAGGA+AGG - chr5_2:45655280-45655299 None:intergenic 40.0%
GGAATCCATATAAGGACAAG+AGG - chr5_2:45655284-45655303 None:intergenic 40.0%
TTGTCCTTATATGGATTCCC+TGG + chr5_2:45655285-45655304 Msa0771920:intron 40.0%
CCATGACTCTGTATGAAGTA+GGG - chr5_2:45655356-45655375 None:intergenic 40.0%
ACCATGACTCTGTATGAAGT+AGG - chr5_2:45655357-45655376 None:intergenic 40.0%
!! ATCATTTTTGTGTGGCCTCT+AGG + chr5_2:45655694-45655713 Msa0771920:intron 40.0%
AAGTGGCTGGGAAAATTCAA+GGG - chr5_2:45655781-45655800 None:intergenic 40.0%
TAAGTGGCTGGGAAAATTCA+AGG - chr5_2:45655782-45655801 None:intergenic 40.0%
! TTGAATTTTCCCAGCCACTT+AGG + chr5_2:45655781-45655800 Msa0771920:CDS 40.0%
TCCATTCCTTTCCTTCCATT+TGG + chr5_2:45655890-45655909 Msa0771920:intron 40.0%
ACCAAATGGAAGGAAAGGAA+TGG - chr5_2:45655894-45655913 None:intergenic 40.0%
ACTCTATGAATTGCCCAACT+TGG + chr5_2:45656193-45656212 Msa0771920:intron 40.0%
!! TTACTCAGGGAGTATCAAGT+TGG + chr5_2:45656340-45656359 Msa0771920:intron 40.0%
ATAGCCAGCATGTGTCAATT+TGG - chr5_2:45656496-45656515 None:intergenic 40.0%
! TGTTGTTTGTCATGTGTGCA+GGG + chr5_2:45656577-45656596 Msa0771920:intron 40.0%
!! AGAAAGGTTTCTGGCATATC+AGG - chr5_2:45656717-45656736 None:intergenic 40.0%
AAGTTCTGCCATACAAAGTG+AGG + chr5_2:45656829-45656848 Msa0771920:three_prime_UTR 40.0%
GTGGTGTATAAAATGCTCAG+TGG + chr5_2:45657066-45657085 Msa0771920:three_prime_UTR 40.0%
AACTATGTCGGTGATGTGTC+GGG - chr5_2:45651535-45651554 None:intergenic 45.0%
GAACTATGTCGGTGATGTGT+CGG - chr5_2:45651536-45651555 None:intergenic 45.0%
TCACGGACCCAGTAATGAAA+TGG - chr5_2:45652167-45652186 None:intergenic 45.0%
TGTGATTCTTCAACTGGAGC+TGG + chr5_2:45652351-45652370 Msa0771920:five_prime_UTR 45.0%
CTGGAGCTGGATTCTCAAAA+AGG + chr5_2:45652364-45652383 Msa0771920:five_prime_UTR 45.0%
ATCACACCCCTTTAGCATTG+AGG + chr5_2:45652658-45652677 Msa0771920:CDS 45.0%
AGGAGACCTCAATGCTAAAG+GGG - chr5_2:45652667-45652686 None:intergenic 45.0%
GCATCTGATCCAATCAGTGT+TGG + chr5_2:45652723-45652742 Msa0771920:CDS 45.0%
TCAAGAGGTCGTGTTTACCA+TGG + chr5_2:45652861-45652880 Msa0771920:CDS 45.0%
!! AGATTTCTAGGGGTGCTTCA+AGG + chr5_2:45652934-45652953 Msa0771920:CDS 45.0%
GGAATCTTGTTCTCCTGAGT+TGG + chr5_2:45652968-45652987 Msa0771920:CDS 45.0%
TTTCCAGTAGGCCATCTAAG+AGG - chr5_2:45653104-45653123 None:intergenic 45.0%
GCACAAGAGGTTCTTTCTTC+TGG + chr5_2:45653158-45653177 Msa0771920:CDS 45.0%
GGGGAGAACCTGTATATTAC+TGG + chr5_2:45653246-45653265 Msa0771920:intron 45.0%
GTTGCCAATACCCGCAATTA+CGG + chr5_2:45653309-45653328 Msa0771920:intron 45.0%
AATACCCGCAATTACGGTTG+CGG + chr5_2:45653315-45653334 Msa0771920:intron 45.0%
ATATCCGCAACCGTAATTGC+GGG - chr5_2:45653322-45653341 None:intergenic 45.0%
CATATGAGAGGCTGAACGAA+AGG - chr5_2:45653434-45653453 None:intergenic 45.0%
TGGGTTCAACGTATATAGGG+GGG + chr5_2:45653661-45653680 Msa0771920:intron 45.0%
! AACTCAATCGCTGTTGCTTG+CGG + chr5_2:45653754-45653773 Msa0771920:intron 45.0%
GTCTTGGTCCATATTGTGGT+TGG + chr5_2:45653802-45653821 Msa0771920:intron 45.0%
TGTCTAGTACGGTTCGAATC+TGG - chr5_2:45654052-45654071 None:intergenic 45.0%
ACCGTACTAGACATAGGTTG+TGG + chr5_2:45654059-45654078 Msa0771920:CDS 45.0%
GCCACAACCTATGTCTAGTA+CGG - chr5_2:45654063-45654082 None:intergenic 45.0%
CTAGACATAGGTTGTGGCTA+TGG + chr5_2:45654065-45654084 Msa0771920:CDS 45.0%
AGCTGAACTTGACTACCAGA+AGG - chr5_2:45654152-45654171 None:intergenic 45.0%
!! GTGCAAGATGTGGCATTGAT+TGG + chr5_2:45654261-45654280 Msa0771920:CDS 45.0%
!!! GATAGACTTTTAAGACCGGG+TGG + chr5_2:45654420-45654439 Msa0771920:CDS 45.0%
! GTCCAAACAAAGTATCCACC+CGG - chr5_2:45654438-45654457 None:intergenic 45.0%
! CATGTCCCAGCACAGATTTT+CGG - chr5_2:45654526-45654545 None:intergenic 45.0%
GAACTGCAAAACTGCATAGG+AGG + chr5_2:45654760-45654779 Msa0771920:CDS 45.0%
TTTCAATTGAAAGCCAGCGG+CGG - chr5_2:45654795-45654814 None:intergenic 45.0%
AAGGGAAAAATGGCCTTCTC+GGG + chr5_2:45654816-45654835 Msa0771920:CDS 45.0%
ACATGTTGTAAGGCGGAGAA+GGG - chr5_2:45655085-45655104 None:intergenic 45.0%
AACATGTTGTAAGGCGGAGA+AGG - chr5_2:45655086-45655105 None:intergenic 45.0%
TGCAAGCTAGAAAGTCTGTG+TGG + chr5_2:45655159-45655178 Msa0771920:CDS 45.0%
GCAAGCTAGAAAGTCTGTGT+GGG + chr5_2:45655160-45655179 Msa0771920:CDS 45.0%
! TTGTCGGCGTTTTGCATGAT+TGG + chr5_2:45655243-45655262 Msa0771920:CDS 45.0%
CATGCCAGGGAATCCATATA+AGG - chr5_2:45655292-45655311 None:intergenic 45.0%
CCCTACTTCATACAGAGTCA+TGG + chr5_2:45655353-45655372 Msa0771920:intron 45.0%
TCATAGGTTCTCGGGTATGT+CGG - chr5_2:45655732-45655751 None:intergenic 45.0%
ATACCCGAGAACCTATGACT+TGG + chr5_2:45655734-45655753 Msa0771920:CDS 45.0%
TGCACCAAGTCATAGGTTCT+CGG - chr5_2:45655741-45655760 None:intergenic 45.0%
ATACTCCCTGAGTAACTCCA+GGG - chr5_2:45656335-45656354 None:intergenic 45.0%
GGCTATGTGAGGGACTAATT+TGG + chr5_2:45656510-45656529 Msa0771920:intron 45.0%
! CTGTTGTTTGTCATGTGTGC+AGG + chr5_2:45656576-45656595 Msa0771920:intron 45.0%
TCTTGCTTCCCATTTCAGCT+GGG - chr5_2:45656659-45656678 None:intergenic 45.0%
CGAAATCGAAAGTAACAGCG+AGG + chr5_2:45656684-45656703 Msa0771920:CDS 45.0%
TTCTTTGTCAGCTGCTTGTG+TGG - chr5_2:45656943-45656962 None:intergenic 45.0%
ACTATGTCGGTGATGTGTCG+GGG - chr5_2:45651534-45651553 None:intergenic 50.0%
ACAGTGTCTGTGCTCACGAT+CGG + chr5_2:45651694-45651713 Msa0771920:five_prime_UTR 50.0%
ATGTCTAGGCCTCTACATCG+AGG + chr5_2:45652531-45652550 Msa0771920:CDS 50.0%
! CCTCTACATCGAGGTGTTTC+CGG + chr5_2:45652540-45652559 Msa0771920:CDS 50.0%
TGTTTCCGGTACTCGTGTAC+CGG + chr5_2:45652554-45652573 Msa0771920:CDS 50.0%
! GTTTTCCGGTACACGAGTAC+CGG - chr5_2:45652562-45652581 None:intergenic 50.0%
CTTGGTGAGCCAACACTGAT+TGG - chr5_2:45652735-45652754 None:intergenic 50.0%
!! TTTCTAGGGGTGCTTCAAGG+TGG + chr5_2:45652937-45652956 Msa0771920:CDS 50.0%
GTTCCTCTTAGATGGCCTAC+TGG + chr5_2:45653098-45653117 Msa0771920:CDS 50.0%
! CTTCTGGAAGCTTGACCAAG+AGG + chr5_2:45653174-45653193 Msa0771920:CDS 50.0%
CTGGAATATGTGGCTGATGC+TGG + chr5_2:45653265-45653284 Msa0771920:intron 50.0%
GCAACCGTAATTGCGGGTAT+TGG - chr5_2:45653316-45653335 None:intergenic 50.0%
GGGTTCAACGTATATAGGGG+GGG + chr5_2:45653662-45653681 Msa0771920:intron 50.0%
! ATCGCTGTTGCTTGCGGTTT+CGG + chr5_2:45653760-45653779 Msa0771920:intron 50.0%
GGTTGTGGCTATGGTAGCTT+TGG + chr5_2:45654074-45654093 Msa0771920:CDS 50.0%
GTTCAGCTTACTCTTGAGCG+AGG + chr5_2:45654164-45654183 Msa0771920:CDS 50.0%
!! GGCATTGATTGGGACCAGAA+AGG + chr5_2:45654272-45654291 Msa0771920:CDS 50.0%
GACCGGGTGGATACTTTGTT+TGG + chr5_2:45654433-45654452 Msa0771920:CDS 50.0%
ACGAGCATTTGTAAGCGGTG+AGG - chr5_2:45654460-45654479 None:intergenic 50.0%
ATCGAGACCTCTACCACACA+GGG - chr5_2:45654719-45654738 None:intergenic 50.0%
CGCGAACTGCAAAACTGCAT+AGG + chr5_2:45654757-45654776 Msa0771920:CDS 50.0%
TTCAATTGAAAGCCAGCGGC+GGG - chr5_2:45654794-45654813 None:intergenic 50.0%
GGATTGCTGCCTGATGAACT+TGG + chr5_2:45654960-45654979 Msa0771920:intron 50.0%
GAGTCCTCACCAAGTTCATC+AGG - chr5_2:45654972-45654991 None:intergenic 50.0%
GTCTGTGTGGGTAATGAACG+TGG + chr5_2:45655172-45655191 Msa0771920:CDS 50.0%
ATGAACGTGGTCCCAAGAAC+TGG + chr5_2:45655185-45655204 Msa0771920:CDS 50.0%
AAACCTCGGTCCTGGATCAA+GGG - chr5_2:45655224-45655243 None:intergenic 50.0%
AAAACCTCGGTCCTGGATCA+AGG - chr5_2:45655225-45655244 None:intergenic 50.0%
!! ATCCAGGACCGAGGTTTTGT+CGG + chr5_2:45655227-45655246 Msa0771920:CDS 50.0%
GCAAAACGCCGACAAAACCT+CGG - chr5_2:45655238-45655257 None:intergenic 50.0%
GACTCTGAGCCAAAGGTAAG+TGG - chr5_2:45655621-45655640 None:intergenic 50.0%
TCTGCAAGACTCTGAGCCAA+AGG - chr5_2:45655628-45655647 None:intergenic 50.0%
GCACCAAGTCATAGGTTCTC+GGG - chr5_2:45655740-45655759 None:intergenic 50.0%
TGCTGCATGCACCAAGTCAT+AGG - chr5_2:45655748-45655767 None:intergenic 50.0%
!! TATGACTTGGTGCATGCAGC+AGG + chr5_2:45655747-45655766 Msa0771920:CDS 50.0%
!! ATGACTTGGTGCATGCAGCA+GGG + chr5_2:45655748-45655767 Msa0771920:CDS 50.0%
TCAAGCATGGTGCACCTAAG+TGG - chr5_2:45655798-45655817 None:intergenic 50.0%
! TGTCATGTCAGATTGGTCCC+TGG + chr5_2:45656315-45656334 Msa0771920:intron 50.0%
ATTGGTCCCTGGAGTTACTC+AGG + chr5_2:45656326-45656345 Msa0771920:intron 50.0%
TTGGTCCCTGGAGTTACTCA+GGG + chr5_2:45656327-45656346 Msa0771920:intron 50.0%
GATACTCCCTGAGTAACTCC+AGG - chr5_2:45656336-45656355 None:intergenic 50.0%
GGGACCAAATTGACACATGC+TGG + chr5_2:45656489-45656508 Msa0771920:intron 50.0%
! TGACACATGCTGGCTATGTG+AGG + chr5_2:45656499-45656518 Msa0771920:intron 50.0%
! GACACATGCTGGCTATGTGA+GGG + chr5_2:45656500-45656519 Msa0771920:intron 50.0%
GTTTGTCATGTGTGCAGGGT+TGG + chr5_2:45656581-45656600 Msa0771920:intron 50.0%
TCTTAGCAGCCCAGCTGAAA+TGG + chr5_2:45656647-45656666 Msa0771920:CDS 50.0%
CTTAGCAGCCCAGCTGAAAT+GGG + chr5_2:45656648-45656667 Msa0771920:CDS 50.0%
CTCTTGCTTCCCATTTCAGC+TGG - chr5_2:45656660-45656679 None:intergenic 50.0%
ATGACCCTATGCACGCCTTA+CGG - chr5_2:45656913-45656932 None:intergenic 50.0%
CAGACACTGTCTGCTCGCTT+CGG - chr5_2:45651684-45651703 None:intergenic 55.0%
CCGGAAACACCTCGATGTAG+AGG - chr5_2:45652543-45652562 None:intergenic 55.0%
GGGCCGAGAACCTTTCTTTC+TGG - chr5_2:45654698-45654717 None:intergenic 55.0%
TCGAGACCTCTACCACACAG+GGG - chr5_2:45654718-45654737 None:intergenic 55.0%
CATCGAGACCTCTACCACAC+AGG - chr5_2:45654720-45654739 None:intergenic 55.0%
GTGTGGTAGAGGTCTCGATG+TGG + chr5_2:45654720-45654739 Msa0771920:CDS 55.0%
! GCTGCCTGATGAACTTGGTG+AGG + chr5_2:45654965-45654984 Msa0771920:CDS 55.0%
TTGGTGAGGACTCTGACAGC+TGG + chr5_2:45654979-45654998 Msa0771920:CDS 55.0%
TCTGATCATCCGAAGAGGCC+CGG + chr5_2:45655050-45655069 Msa0771920:CDS 55.0%
GGTTCTCGGGTATGTCGGAA+AGG - chr5_2:45655727-45655746 None:intergenic 55.0%
CATGGTGCACCTAAGTGGCT+GGG - chr5_2:45655793-45655812 None:intergenic 55.0%
TGACAGGTTACTTCGCCCAG+AGG + chr5_2:45655833-45655852 Msa0771920:CDS 55.0%
TTACGGCTGCACAGGAGAAG+CGG - chr5_2:45656896-45656915 None:intergenic 55.0%
TCGGTGATGTGTCGGGGTCA+AGG - chr5_2:45651528-45651547 None:intergenic 60.0%
AAAGGTTCTCGGCCCCTGTG+TGG + chr5_2:45654703-45654722 Msa0771920:CDS 60.0%
CTTCCCTTGATCCAGGACCG+AGG + chr5_2:45655218-45655237 Msa0771920:CDS 60.0%
TTGTGTGGCCTCTAGGTGCG+AGG + chr5_2:45655701-45655720 Msa0771920:intron 60.0%
GCATGGTGCACCTAAGTGGC+TGG - chr5_2:45655794-45655813 None:intergenic 60.0%
GCTTCTCCTGTGCAGCCGTA+AGG + chr5_2:45656895-45656914 Msa0771920:three_prime_UTR 60.0%
TGCAGCCGTAAGGCGTGCAT+AGG + chr5_2:45656905-45656924 Msa0771920:three_prime_UTR 60.0%
GCAGCCGTAAGGCGTGCATA+GGG + chr5_2:45656906-45656925 Msa0771920:three_prime_UTR 60.0%
TCTCGGCCCCTGTGTGGTAG+AGG + chr5_2:45654709-45654728 Msa0771920:CDS 65.0%
TCCTCGTCACCGGGCCTCTT+CGG - chr5_2:45655062-45655081 None:intergenic 65.0%
GGAGAAGGGTCCTCGTCACC+GGG - chr5_2:45655071-45655090 None:intergenic 65.0%
CGGAGAAGGGTCCTCGTCAC+CGG - chr5_2:45655072-45655091 None:intergenic 65.0%
CGCCGACAAAACCTCGGTCC+TGG - chr5_2:45655232-45655251 None:intergenic 65.0%
CGGAAAGGCCTCGCACCTAG+AGG - chr5_2:45655712-45655731 None:intergenic 65.0%
TGCACGCCTTACGGCTGCAC+AGG - chr5_2:45656904-45656923 None:intergenic 65.0%
GAGGAACACAGACCCGCCGC+TGG + chr5_2:45654779-45654798 Msa0771920:CDS 70.0%
TCCGAAGAGGCCCGGTGACG+AGG + chr5_2:45655058-45655077 Msa0771920:CDS 70.0%
CGGCTGCACAGGAGAAGCGG+TGG - chr5_2:45656893-45656912 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 45651483 45657118 45651483 ID=Msa0771920;Name=Msa0771920
chr5_2 mRNA 45651483 45657118 45651483 ID=Msa0771920-mRNA-1;Parent=Msa0771920;Name=Msa0771920-mRNA-1;_AED=0.07;_eAED=0.07;_QI=665|1|1|1|0.87|0.77|9|362|675
chr5_2 exon 45651483 45651964 45651483 ID=Msa0771920-mRNA-1:exon:13728;Parent=Msa0771920-mRNA-1
chr5_2 exon 45652348 45653195 45652348 ID=Msa0771920-mRNA-1:exon:13729;Parent=Msa0771920-mRNA-1
chr5_2 exon 45653402 45653534 45653402 ID=Msa0771920-mRNA-1:exon:13730;Parent=Msa0771920-mRNA-1
chr5_2 exon 45654053 45654293 45654053 ID=Msa0771920-mRNA-1:exon:13731;Parent=Msa0771920-mRNA-1
chr5_2 exon 45654397 45654610 45654397 ID=Msa0771920-mRNA-1:exon:13732;Parent=Msa0771920-mRNA-1
chr5_2 exon 45654699 45654871 45654699 ID=Msa0771920-mRNA-1:exon:13733;Parent=Msa0771920-mRNA-1
chr5_2 exon 45654961 45655264 45654961 ID=Msa0771920-mRNA-1:exon:13734;Parent=Msa0771920-mRNA-1
chr5_2 exon 45655716 45655854 45655716 ID=Msa0771920-mRNA-1:exon:13735;Parent=Msa0771920-mRNA-1
chr5_2 exon 45656598 45657118 45656598 ID=Msa0771920-mRNA-1:exon:13736;Parent=Msa0771920-mRNA-1
chr5_2 five_prime_UTR 45651483 45651964 45651483 ID=Msa0771920-mRNA-1:five_prime_utr;Parent=Msa0771920-mRNA-1
chr5_2 five_prime_UTR 45652348 45652530 45652348 ID=Msa0771920-mRNA-1:five_prime_utr;Parent=Msa0771920-mRNA-1
chr5_2 CDS 45652531 45653195 45652531 ID=Msa0771920-mRNA-1:cds;Parent=Msa0771920-mRNA-1
chr5_2 CDS 45653402 45653534 45653402 ID=Msa0771920-mRNA-1:cds;Parent=Msa0771920-mRNA-1
chr5_2 CDS 45654053 45654293 45654053 ID=Msa0771920-mRNA-1:cds;Parent=Msa0771920-mRNA-1
chr5_2 CDS 45654397 45654610 45654397 ID=Msa0771920-mRNA-1:cds;Parent=Msa0771920-mRNA-1
chr5_2 CDS 45654699 45654871 45654699 ID=Msa0771920-mRNA-1:cds;Parent=Msa0771920-mRNA-1
chr5_2 CDS 45654961 45655264 45654961 ID=Msa0771920-mRNA-1:cds;Parent=Msa0771920-mRNA-1
chr5_2 CDS 45655716 45655854 45655716 ID=Msa0771920-mRNA-1:cds;Parent=Msa0771920-mRNA-1
chr5_2 CDS 45656598 45656756 45656598 ID=Msa0771920-mRNA-1:cds;Parent=Msa0771920-mRNA-1
chr5_2 three_prime_UTR 45656757 45657118 45656757 ID=Msa0771920-mRNA-1:three_prime_utr;Parent=Msa0771920-mRNA-1
Gene Sequence

>Msa0771920

ATGTCTAGGCCTCTACATCGAGGTGTTTCCGGTACTCGTGTACCGGAAAACATCAATGATGATACATGGGACTCTCAATCCAAAGATAAATCAGAAAAAGATGATTTTGATAGAAGGGGTTCTTCAGATCACACCCCTTTAGCATTGAGGTCTCCTTTGAAGTTGTTGTTTTCAGATAAAGAGAATGGTTTTGCATCTGATCCAATCAGTGTTGGCTCACCAAGAAGCCGTTTTAAGTTGATGATGTTTTTGGTGAAATTTAGTTTAGTTTTTATAGTTGTTTTTGCTCTTGTTGGATCTTTTTTGTGGACTTTGAATTTGTCGTCTTCGTCAAGAGGTCGTGTTTACCATGGTTATAGGAGACTTCAAGAGAAACTTGTTTCAGATTTGTTGGATATTGGTGAGATTTCTAGGGGTGCTTCAAGGTGGAAAGAATTGGAATCTTGTTCTCCTGAGTTGGAAAATTTTGTTCCTTGCTTTAATGTTTCCGATGGAAATGAGTTTGAAAGGAAATGTGAATATGAGCAGAGTCAAAATTGTTTGGTTCTGCCACCAGTTAATTACAAAGTTCCTCTTAGATGGCCTACTGGAAAAGATGTTATTTGGGTTGCTAATGTGAAAATCACTGCACAAGAGGTTCTTTCTTCTGGAAGCTTGACCAAGAGGATGATGATGTTGGATGAAGAACAAATTTCCTTTCGTTCAGCCTCTCATATGTTTGATGGAGTTGAAGACTATTCACATCAGATTGCTGAAATGATTGGACTTAGAAATGAATCTTCCTTCATACAAGCTGGTATTCGAACCGTACTAGACATAGGTTGTGGCTATGGTAGCTTTGGAGCACACCTCTTTGACAGTCAAATTTTGACTTTGTGCATTGCAAACTATGAGCCTTCTGGTAGTCAAGTTCAGCTTACTCTTGAGCGAGGTCTTCCTGCTATGATTGCTTCTTTCACTTCAAAACAGTTGCCATATCCATCTCTGTCTTTTGATATGTTACATTGTGCAAGATGTGGCATTGATTGGGACCAGAAAGATGGCAATCTCTTGATTGAAGCTGATAGACTTTTAAGACCGGGTGGATACTTTGTTTGGACCTCACCGCTTACAAATGCTCGTAACAAGGAGAATCAGAAAAGGTGGAAGATTGTGCACGACTTTACCGAAAATCTGTGCTGGGACATGTTATCACAGCAAGATGAAACTGTTGTATTTAAAAAAGCAAGCAAAAAGAATTGTTATACATCAAGAAAGAAAGGTTCTCGGCCCCTGTGTGGTAGAGGTCTCGATGTGGAGTCTCCATATTATCGCGAACTGCAAAACTGCATAGGAGGAACACAGACCCGCCGCTGGCTTTCAATTGAAAAAAGGGAAAAATGGCCTTCTCGGGCTAATTTGAACAAGAATGAGTTAGCCATACATGGATTGCTGCCTGATGAACTTGGTGAGGACTCTGACAGCTGGAAAGCAGCAGTGCAAAATTATTGGTCACTCCTGTCGCCTGTAATATTTTCTGATCATCCGAAGAGGCCCGGTGACGAGGACCCTTCTCCGCCTTACAACATGTTCAGAAATGTGTTAGACATGAATGCTAACTTTGGTGGCTTTAATTCTGCTTTGTTGCAAGCTAGAAAGTCTGTGTGGGTAATGAACGTGGTCCCAAGAACTGGACCTAACTATCTTCCCTTGATCCAGGACCGAGGTTTTGTCGGCGTTTTGCATGATTGGTGCGAGGCCTTTCCGACATACCCGAGAACCTATGACTTGGTGCATGCAGCAGGGATTCTATCCCTTGAATTTTCCCAGCCACTTAGGTGCACCATGCTTGATCTGTTCATTGAAATTGACAGGTTACTTCGCCCAGAGGGTTGGATTATAATTCGCGACACTATTCCTTTAATAGAATCAGCTAGAGTCTTAGCAGCCCAGCTGAAATGGGAAGCAAGAGTGATCGAAATCGAAAGTAACAGCGAGGAGAAACTCCTGATATGCCAGAAACCTTTCTTCAAGAAACATGCAATCTAA
Protein sequence

>Msa0771920

MSRPLHRGVSGTRVPENINDDTWDSQSKDKSEKDDFDRRGSSDHTPLALRSPLKLLFSDKENGFASDPISVGSPRSRFKLMMFLVKFSLVFIVVFALVGSFLWTLNLSSSSRGRVYHGYRRLQEKLVSDLLDIGEISRGASRWKELESCSPELENFVPCFNVSDGNEFERKCEYEQSQNCLVLPPVNYKVPLRWPTGKDVIWVANVKITAQEVLSSGSLTKRMMMLDEEQISFRSASHMFDGVEDYSHQIAEMIGLRNESSFIQAGIRTVLDIGCGYGSFGAHLFDSQILTLCIANYEPSGSQVQLTLERGLPAMIASFTSKQLPYPSLSFDMLHCARCGIDWDQKDGNLLIEADRLLRPGGYFVWTSPLTNARNKENQKRWKIVHDFTENLCWDMLSQQDETVVFKKASKKNCYTSRKKGSRPLCGRGLDVESPYYRELQNCIGGTQTRRWLSIEKREKWPSRANLNKNELAIHGLLPDELGEDSDSWKAAVQNYWSLLSPVIFSDHPKRPGDEDPSPPYNMFRNVLDMNANFGGFNSALLQARKSVWVMNVVPRTGPNYLPLIQDRGFVGVLHDWCEAFPTYPRTYDLVHAAGILSLEFSQPLRCTMLDLFIEIDRLLRPEGWIIIRDTIPLIESARVLAAQLKWEARVIEIESNSEEKLLICQKPFFKKHAI*