Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860920 | XP_003617079.1 | 97.172 | 389 | 11 | 0 | 1 | 389 | 3 | 391 | 0.0 | 770 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860920 | sp|Q9FH04|ADHL7_ARATH | 69.666 | 389 | 116 | 2 | 1 | 387 | 1 | 389 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860920 | G7K2X3 | 97.172 | 389 | 11 | 0 | 1 | 389 | 3 | 391 | 0.0 | 770 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014410 | Msa0860920 | 0.869895 | 2.196759e-66 | -8.615850e-47 |
| Msa0035400 | Msa0860920 | 0.825008 | 5.924079e-54 | -8.615850e-47 |
| Msa0044180 | Msa0860920 | 0.827097 | 1.887767e-54 | -8.615850e-47 |
| Msa0064550 | Msa0860920 | 0.850604 | 1.524743e-60 | -8.615850e-47 |
| Msa0067150 | Msa0860920 | 0.810807 | 9.594874e-51 | -8.615850e-47 |
| Msa0090860 | Msa0860920 | 0.804952 | 1.687585e-49 | -8.615850e-47 |
| Msa0092960 | Msa0860920 | 0.812356 | 4.418903e-51 | -8.615850e-47 |
| Msa0108070 | Msa0860920 | 0.834327 | 3.194985e-56 | -8.615850e-47 |
| Msa0109490 | Msa0860920 | 0.835202 | 1.924733e-56 | -8.615850e-47 |
| Msa0604880 | Msa0860920 | 0.825165 | 5.438677e-54 | -8.615850e-47 |
| Msa0605250 | Msa0860920 | 0.829269 | 5.656445e-55 | -8.615850e-47 |
| Msa0622250 | Msa0860920 | 0.800951 | 1.132401e-48 | -8.615850e-47 |
| Msa0627050 | Msa0860920 | 0.820463 | 6.768604e-53 | -8.615850e-47 |
| Msa0646190 | Msa0860920 | 0.823134 | 1.631200e-53 | -8.615850e-47 |
| Msa0649310 | Msa0860920 | 0.803847 | 2.867229e-49 | -8.615850e-47 |
| Msa0659300 | Msa0860920 | -0.820919 | 5.317384e-53 | -8.615850e-47 |
| Msa0704220 | Msa0860920 | 0.815393 | 9.459726e-52 | -8.615850e-47 |
| Msa0705420 | Msa0860920 | 0.808370 | 3.202554e-50 | -8.615850e-47 |
| Msa0709660 | Msa0860920 | 0.844213 | 8.687972e-59 | -8.615850e-47 |
| Msa0729550 | Msa0860920 | 0.801382 | 9.244609e-49 | -8.615850e-47 |
| Msa0731770 | Msa0860920 | -0.801158 | 1.027545e-48 | -8.615850e-47 |
| Msa0740210 | Msa0860920 | 0.974119 | 1.346532e-137 | -8.615850e-47 |
| Msa0769830 | Msa0860920 | 0.821083 | 4.876058e-53 | -8.615850e-47 |
| Msa0781390 | Msa0860920 | 0.976680 | 2.720945e-142 | -8.615850e-47 |
| Msa0801360 | Msa0860920 | 0.804654 | 1.947760e-49 | -8.615850e-47 |
| Msa0806720 | Msa0860920 | 0.806453 | 8.164816e-50 | -8.615850e-47 |
| Msa0806760 | Msa0860920 | 0.803798 | 2.934662e-49 | -8.615850e-47 |
| Msa0809300 | Msa0860920 | 0.807641 | 4.577462e-50 | -8.615850e-47 |
| Msa0820520 | Msa0860920 | 0.921328 | 4.119566e-88 | -8.615850e-47 |
| Msa0828570 | Msa0860920 | 0.806222 | 9.135483e-50 | -8.615850e-47 |
| Msa0839830 | Msa0860920 | 0.804194 | 2.428024e-49 | -8.615850e-47 |
| Msa0140290 | Msa0860920 | 0.809248 | 2.078792e-50 | -8.615850e-47 |
| Msa0142420 | Msa0860920 | 0.812306 | 4.530167e-51 | -8.615850e-47 |
| Msa0154200 | Msa0860920 | 0.814943 | 1.190737e-51 | -8.615850e-47 |
| Msa0154220 | Msa0860920 | 0.843346 | 1.482334e-58 | -8.615850e-47 |
| Msa0154240 | Msa0860920 | 0.800137 | 1.659831e-48 | -8.615850e-47 |
| Msa0154270 | Msa0860920 | 0.889108 | 3.252626e-73 | -8.615850e-47 |
| Msa0155610 | Msa0860920 | 0.828965 | 6.705735e-55 | -8.615850e-47 |
| Msa0183560 | Msa0860920 | 0.825120 | 5.573535e-54 | -8.615850e-47 |
| Msa0197030 | Msa0860920 | 0.848935 | 4.464039e-60 | -8.615850e-47 |
| Msa0218530 | Msa0860920 | -0.812894 | 3.369709e-51 | -8.615850e-47 |
| Msa0218650 | Msa0860920 | -0.821045 | 4.974832e-53 | -8.615850e-47 |
| Msa0377280 | Msa0860920 | 0.816634 | 4.998077e-52 | -8.615850e-47 |
| Msa0380650 | Msa0860920 | 0.821121 | 4.778907e-53 | -8.615850e-47 |
| Msa0382590 | Msa0860920 | 0.801848 | 7.417919e-49 | -8.615850e-47 |
| Msa0384530 | Msa0860920 | 0.810104 | 1.360493e-50 | -8.615850e-47 |
| Msa0392050 | Msa0860920 | 0.837091 | 6.377499e-57 | -8.615850e-47 |
| Msa0392540 | Msa0860920 | 0.820565 | 6.413965e-53 | -8.615850e-47 |
| Msa0401340 | Msa0860920 | 0.837238 | 5.849133e-57 | -8.615850e-47 |
| Msa0404690 | Msa0860920 | 0.811374 | 7.227428e-51 | -8.615850e-47 |
| Msa0412190 | Msa0860920 | 0.872621 | 2.762382e-67 | -8.615850e-47 |
| Msa0418430 | Msa0860920 | 0.803063 | 4.168360e-49 | -8.615850e-47 |
| Msa0430290 | Msa0860920 | 0.823165 | 1.603933e-53 | -8.615850e-47 |
| Msa0432720 | Msa0860920 | 0.832588 | 8.676758e-56 | -8.615850e-47 |
| Msa0435010 | Msa0860920 | 0.860453 | 2.043455e-63 | -8.615850e-47 |
| Msa0440310 | Msa0860920 | 0.826584 | 2.503427e-54 | -8.615850e-47 |
| Msa0448120 | Msa0860920 | 0.835173 | 1.957022e-56 | -8.615850e-47 |
| Msa0456760 | Msa0860920 | 0.805878 | 1.078911e-49 | -8.615850e-47 |
| Msa0462590 | Msa0860920 | 0.821352 | 4.225808e-53 | -8.615850e-47 |
| Msa0465800 | Msa0860920 | 0.808699 | 2.724122e-50 | -8.615850e-47 |
| Msa0469950 | Msa0860920 | 0.835384 | 1.731269e-56 | -8.615850e-47 |
| Msa0472740 | Msa0860920 | 0.809281 | 2.044738e-50 | -8.615850e-47 |
| Msa0476780 | Msa0860920 | 0.808951 | 2.406171e-50 | -8.615850e-47 |
| Msa0479030 | Msa0860920 | 0.824060 | 9.904487e-54 | -8.615850e-47 |
| Msa0479100 | Msa0860920 | 0.853031 | 3.126117e-61 | -8.615850e-47 |
| Msa0481490 | Msa0860920 | 0.817951 | 2.525607e-52 | -8.615850e-47 |
| Msa0238860 | Msa0860920 | 0.815488 | 9.011342e-52 | -8.615850e-47 |
| Msa0265580 | Msa0860920 | 0.827978 | 1.160393e-54 | -8.615850e-47 |
| Msa0276590 | Msa0860920 | 0.823629 | 1.249872e-53 | -8.615850e-47 |
| Msa0303440 | Msa0860920 | 0.819027 | 1.440503e-52 | -8.615850e-47 |
| Msa0344680 | Msa0860920 | 0.837057 | 6.505627e-57 | -8.615850e-47 |
| Msa0344710 | Msa0860920 | 0.810535 | 1.098181e-50 | -8.615850e-47 |
| Msa0346790 | Msa0860920 | 0.811346 | 7.329823e-51 | -8.615850e-47 |
| Msa0354390 | Msa0860920 | 0.817839 | 2.677336e-52 | -8.615850e-47 |
| Msa0358290 | Msa0860920 | 0.822101 | 2.835899e-53 | -8.615850e-47 |
| Msa0487490 | Msa0860920 | 0.837112 | 6.299414e-57 | -8.615850e-47 |
| Msa0525270 | Msa0860920 | 0.843256 | 1.567188e-58 | -8.615850e-47 |
| Msa0525280 | Msa0860920 | 0.837872 | 4.021440e-57 | -8.615850e-47 |
| Msa0530950 | Msa0860920 | 0.807792 | 4.251845e-50 | -8.615850e-47 |
| Msa0549540 | Msa0860920 | 0.840286 | 9.530649e-58 | -8.615850e-47 |
| Msa0549760 | Msa0860920 | 0.801817 | 7.527008e-49 | -8.615850e-47 |
| Msa0578070 | Msa0860920 | -0.805342 | 1.397852e-49 | -8.615850e-47 |
| Msa0583740 | Msa0860920 | 0.846982 | 1.542694e-59 | -8.615850e-47 |
| Msa0848760 | Msa0860920 | 0.810326 | 1.218337e-50 | -8.615850e-47 |
| Msa0860920 | Msa0945960 | 0.801899 | 7.240405e-49 | -8.615850e-47 |
| Msa0860920 | Msa0968780 | 0.826022 | 3.407689e-54 | -8.615850e-47 |
| Msa0860920 | Msa0984000 | 0.834814 | 2.410407e-56 | -8.615850e-47 |
| Msa0860920 | Msa1079480 | 0.805174 | 1.516216e-49 | -8.615850e-47 |
| Msa0860920 | Msa1082150 | 0.804589 | 2.008723e-49 | -8.615850e-47 |
| Msa0860920 | Msa1119570 | 0.801000 | 1.106962e-48 | -8.615850e-47 |
| Msa0860920 | Msa1137940 | 0.849739 | 2.665121e-60 | -8.615850e-47 |
| Msa0860920 | Msa1144700 | 0.836983 | 6.797025e-57 | -8.615850e-47 |
| Msa0860920 | Msa1144730 | 0.837369 | 5.413425e-57 | -8.615850e-47 |
| Msa0860920 | Msa1158090 | 0.810954 | 8.916496e-51 | -8.615850e-47 |
| Msa0860920 | Msa1177240 | 0.838668 | 2.508056e-57 | -8.615850e-47 |
| Msa0860920 | Msa1180050 | 0.853041 | 3.106122e-61 | -8.615850e-47 |
| Msa0860920 | Msa1212760 | 0.831008 | 2.128927e-55 | -8.615850e-47 |
| Msa0860920 | Msa1212980 | 0.805229 | 1.476600e-49 | -8.615850e-47 |
| Msa0860920 | Msa1232270 | 0.870378 | 1.526616e-66 | -8.615850e-47 |
| Msa0860920 | Msa1241820 | 0.805158 | 1.528258e-49 | -8.615850e-47 |
| Msa0860920 | Msa1245120 | -0.807866 | 4.099401e-50 | -8.615850e-47 |
| Msa0860920 | Msa1252300 | 0.815963 | 7.061284e-52 | -8.615850e-47 |
| Msa0860920 | Msa1270770 | 0.852499 | 4.435247e-61 | -8.615850e-47 |
| Msa0860920 | Msa1281270 | 0.820488 | 6.680134e-53 | -8.615850e-47 |
| Msa0860920 | Msa1313050 | 0.856552 | 2.978184e-62 | -8.615850e-47 |
| Msa0860920 | Msa1317030 | 0.827174 | 1.809893e-54 | -8.615850e-47 |
| Msa0860920 | Msa1320380 | 0.837079 | 6.421979e-57 | -8.615850e-47 |
| Msa0860920 | Msa1349810 | 0.828021 | 1.133344e-54 | -8.615850e-47 |
| Msa0860920 | Msa1354090 | 0.857514 | 1.549645e-62 | -8.615850e-47 |
| Msa0860920 | Msa1358340 | 0.816918 | 4.316023e-52 | -8.615850e-47 |
| Msa0860920 | Msa1359890 | 0.816471 | 5.437231e-52 | -8.615850e-47 |
| Msa0860920 | Msa1391490 | 0.809799 | 1.582432e-50 | -8.615850e-47 |
| Msa0860920 | Msa1394900 | 0.842882 | 1.971125e-58 | -8.615850e-47 |
| Msa0860920 | Msa1398800 | 0.809506 | 1.829814e-50 | -8.615850e-47 |
| Msa0860920 | Msa1421870 | 0.800475 | 1.416593e-48 | -8.615850e-47 |
| Msa0860920 | Msa1434660 | 0.850628 | 1.502026e-60 | -8.615850e-47 |
| Msa0860920 | Msa1459540 | 0.817294 | 3.553765e-52 | -8.615850e-47 |
| Msa0860920 | Msa1466350 | 0.805900 | 1.067594e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860920 | MtrunA17_Chr5g0440521 | 97.172 | 389 | 11 | 0 | 1 | 389 | 3 | 391 | 0.0 | 770 |
| Msa0860920 | MtrunA17_Chr3g0118441 | 76.364 | 385 | 90 | 1 | 6 | 389 | 2 | 386 | 0.0 | 622 |
| Msa0860920 | MtrunA17_Chr3g0132351 | 61.640 | 378 | 141 | 3 | 14 | 388 | 14 | 390 | 2.19e-164 | 466 |
| Msa0860920 | MtrunA17_Chr3g0118431 | 80.074 | 271 | 54 | 0 | 109 | 379 | 20 | 290 | 2.41e-163 | 459 |
| Msa0860920 | MtrunA17_Chr1g0183131 | 51.337 | 374 | 180 | 2 | 14 | 387 | 6 | 377 | 1.28e-134 | 390 |
| Msa0860920 | MtrunA17_Chr6g0478081 | 50.000 | 382 | 185 | 4 | 8 | 389 | 2 | 377 | 1.16e-129 | 377 |
| Msa0860920 | MtrunA17_Chr7g0262421 | 49.604 | 379 | 188 | 3 | 7 | 385 | 2 | 377 | 1.19e-128 | 375 |
| Msa0860920 | MtrunA17_Chr3g0125911 | 45.550 | 382 | 204 | 4 | 9 | 389 | 2 | 380 | 8.17e-122 | 357 |
| Msa0860920 | MtrunA17_Chr3g0125961 | 45.867 | 375 | 199 | 4 | 14 | 387 | 7 | 378 | 5.73e-121 | 355 |
| Msa0860920 | MtrunA17_Chr3g0125941 | 45.623 | 377 | 201 | 4 | 14 | 389 | 8 | 381 | 6.49e-120 | 352 |
| Msa0860920 | MtrunA17_Chr7g0242291 | 47.619 | 378 | 192 | 5 | 14 | 387 | 18 | 393 | 3.11e-116 | 343 |
| Msa0860920 | MtrunA17_Chr4g0021211 | 44.327 | 379 | 203 | 5 | 10 | 387 | 27 | 398 | 1.19e-105 | 317 |
| Msa0860920 | MtrunA17_Chr5g0419681 | 44.211 | 380 | 203 | 7 | 10 | 387 | 2 | 374 | 1.27e-104 | 313 |
| Msa0860920 | MtrunA17_Chr7g0242301 | 43.733 | 359 | 165 | 4 | 32 | 387 | 1 | 325 | 4.83e-94 | 285 |
| Msa0860920 | MtrunA17_Chr8g0385221 | 30.971 | 381 | 244 | 12 | 15 | 385 | 51 | 422 | 3.99e-38 | 142 |
| Msa0860920 | MtrunA17_Chr6g0474141 | 24.928 | 345 | 220 | 11 | 42 | 378 | 39 | 352 | 4.02e-20 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860920 | AT5G42250.1 | 69.666 | 389 | 116 | 2 | 1 | 387 | 1 | 389 | 0.0 | 572 |
| Msa0860920 | AT1G22430.2 | 59.640 | 389 | 153 | 4 | 3 | 389 | 2 | 388 | 9.66e-170 | 479 |
| Msa0860920 | AT1G22430.1 | 59.640 | 389 | 153 | 4 | 3 | 389 | 2 | 388 | 9.66e-170 | 479 |
| Msa0860920 | AT4G22110.2 | 60.614 | 391 | 150 | 4 | 1 | 389 | 1 | 389 | 5.88e-169 | 478 |
| Msa0860920 | AT4G22110.1 | 60.614 | 391 | 150 | 4 | 1 | 389 | 1 | 389 | 5.88e-169 | 478 |
| Msa0860920 | AT1G22440.1 | 60.519 | 385 | 148 | 4 | 7 | 389 | 4 | 386 | 2.56e-167 | 473 |
| Msa0860920 | AT5G43940.1 | 51.075 | 372 | 180 | 2 | 14 | 385 | 6 | 375 | 9.37e-136 | 393 |
| Msa0860920 | AT5G43940.2 | 50.546 | 366 | 179 | 2 | 20 | 385 | 24 | 387 | 4.52e-132 | 384 |
| Msa0860920 | AT5G24760.1 | 49.741 | 386 | 186 | 5 | 6 | 389 | 2 | 381 | 3.22e-131 | 382 |
| Msa0860920 | AT1G22430.3 | 61.017 | 295 | 112 | 3 | 3 | 295 | 2 | 295 | 2.55e-127 | 369 |
| Msa0860920 | AT1G64710.1 | 48.533 | 375 | 188 | 5 | 16 | 387 | 8 | 380 | 4.88e-124 | 363 |
| Msa0860920 | AT5G24760.2 | 50.000 | 358 | 173 | 4 | 32 | 389 | 1 | 352 | 6.96e-123 | 359 |
| Msa0860920 | AT5G24760.3 | 50.000 | 358 | 173 | 4 | 32 | 389 | 1 | 352 | 6.96e-123 | 359 |
| Msa0860920 | AT1G77120.1 | 47.059 | 374 | 196 | 2 | 14 | 387 | 6 | 377 | 7.58e-123 | 360 |
| Msa0860920 | AT1G32780.1 | 48.177 | 384 | 187 | 6 | 16 | 389 | 9 | 390 | 1.83e-117 | 347 |
| Msa0860920 | AT1G64710.2 | 47.911 | 359 | 182 | 5 | 32 | 387 | 1 | 357 | 2.60e-117 | 345 |
| Msa0860920 | AT1G22430.4 | 59.259 | 270 | 107 | 3 | 3 | 270 | 2 | 270 | 7.30e-112 | 329 |
| Msa0860920 | AT1G22430.5 | 59.259 | 270 | 107 | 3 | 3 | 270 | 2 | 270 | 7.30e-112 | 329 |
| Msa0860920 | AT4G22110.3 | 62.172 | 267 | 98 | 3 | 1 | 265 | 1 | 266 | 2.53e-111 | 327 |
| Msa0860920 | AT1G64710.3 | 47.403 | 308 | 158 | 4 | 82 | 387 | 6 | 311 | 6.17e-98 | 294 |
| Msa0860920 | AT5G24760.4 | 49.259 | 270 | 134 | 3 | 120 | 389 | 1 | 267 | 2.38e-86 | 263 |
| Msa0860920 | AT5G63620.1 | 28.261 | 368 | 250 | 8 | 19 | 379 | 57 | 417 | 2.00e-37 | 140 |
| Msa0860920 | AT5G63620.2 | 28.261 | 368 | 250 | 8 | 19 | 379 | 57 | 417 | 4.16e-37 | 139 |
| Msa0860920 | AT5G63620.3 | 29.461 | 241 | 163 | 3 | 19 | 253 | 57 | 296 | 1.71e-26 | 108 |
| Msa0860920 | AT5G51970.1 | 24.370 | 357 | 220 | 12 | 36 | 378 | 34 | 354 | 2.35e-18 | 86.3 |
| Msa0860920 | AT5G51970.2 | 24.370 | 357 | 220 | 12 | 36 | 378 | 34 | 354 | 2.35e-18 | 86.3 |
| Msa0860920 | AT4G37990.1 | 24.233 | 326 | 218 | 11 | 43 | 364 | 34 | 334 | 2.91e-11 | 64.7 |
| Msa0860920 | AT4G37980.1 | 24.545 | 330 | 212 | 11 | 43 | 364 | 34 | 334 | 3.62e-11 | 64.7 |
Find 89 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATACCTTCTAAATAAAT+AGG | 0.158294 | 5_4:+60013575 | None:intergenic |
| ACACACACCTTTACATCTTA+TGG | 0.160696 | 5_4:+60013338 | None:intergenic |
| ACTCTTATGGGGTCTATATT+TGG | 0.200744 | 5_4:-60010572 | Msa0860920:CDS |
| GTCACAGTGATATCATATTT+TGG | 0.203880 | 5_4:-60012985 | Msa0860920:CDS |
| TTATTATCAGGAACTCAATT+TGG | 0.208168 | 5_4:-60010342 | Msa0860920:intron |
| TGTGGAGCAACTAGGATTAT+AGG | 0.276027 | 5_4:-60011381 | Msa0860920:CDS |
| CTTTATTCAGCGAAGAAGTT+TGG | 0.298247 | 5_4:-60011206 | Msa0860920:intron |
| CACACACCTTTACATCTTAT+GGG | 0.302890 | 5_4:+60013339 | None:intergenic |
| ACTAGATTCACTGATCTAAA+TGG | 0.304247 | 5_4:-60012089 | Msa0860920:CDS |
| CTTTGTAAATCCTGGAGAAT+TGG | 0.307283 | 5_4:-60011174 | Msa0860920:CDS |
| AGTATCCCTATTTATTTAGA+AGG | 0.308290 | 5_4:-60013581 | Msa0860920:intron |
| CCTTCACTTGTTGCTGCAGC+AGG | 0.313951 | 5_4:+60013369 | None:intergenic |
| TAAGAGTCTTCCCTTGAAAA+AGG | 0.321797 | 5_4:+60010588 | None:intergenic |
| GCCCTGTTGGGAGGAATTGC+TGG | 0.324195 | 5_4:+60011984 | None:intergenic |
| CATTGTTATCCCAATCTTCA+TGG | 0.329697 | 5_4:-60012210 | Msa0860920:CDS |
| CTTTACATCTTATGGGTTGT+TGG | 0.330117 | 5_4:+60013346 | None:intergenic |
| TTTCAAGGGAAGACTCTTAT+GGG | 0.369580 | 5_4:-60010584 | Msa0860920:CDS |
| AATGTCTTCGGTGTGTGATT+TGG | 0.385429 | 5_4:-60010250 | Msa0860920:CDS |
| ATCCAGCAATTCCTCCCAAC+AGG | 0.388742 | 5_4:-60011986 | Msa0860920:CDS |
| CTCAGTTGTGGTGTATCAAC+AGG | 0.395594 | 5_4:-60011954 | Msa0860920:intron |
| TCACAATCAGCCATGAAGAT+TGG | 0.401526 | 5_4:+60012200 | None:intergenic |
| TAATACCTTCTAAATAAATA+GGG | 0.402544 | 5_4:+60013576 | None:intergenic |
| GAAAACAGCAAATGTTGAAC+CGG | 0.406203 | 5_4:-60011826 | Msa0860920:CDS |
| TTACATATTGACATAATTCA+AGG | 0.418523 | 5_4:+60010186 | None:intergenic |
| CACAATCAGCCATGAAGATT+GGG | 0.418681 | 5_4:+60012201 | None:intergenic |
| GCTGAAGGAGCTAGACTTTG+TGG | 0.441563 | 5_4:-60011399 | Msa0860920:CDS |
| TGGATCAATCTTGAGTAGAT+TGG | 0.449026 | 5_4:+60012004 | None:intergenic |
| GTCACAGACTTTGTAAATCC+TGG | 0.452717 | 5_4:-60011182 | Msa0860920:CDS |
| GGAAAACAAATCTGTGAGTC+AGG | 0.454117 | 5_4:-60011153 | Msa0860920:CDS |
| ATCCAAGGTTTAATATCAAA+AGG | 0.456805 | 5_4:+60012128 | None:intergenic |
| AACTAGAGACAAATATGAAA+TGG | 0.460302 | 5_4:+60012054 | None:intergenic |
| CTGAGGAGGCATGCCCTGTT+GGG | 0.462513 | 5_4:+60011972 | None:intergenic |
| CTAGCTTCACGTGGCATTGG+TGG | 0.466521 | 5_4:+60013034 | None:intergenic |
| TGACTAAAGGAGAATGTCTT+CGG | 0.469794 | 5_4:-60010262 | Msa0860920:CDS |
| TGCAGCAGGTTTATCTTCCA+TGG | 0.473298 | 5_4:+60013383 | None:intergenic |
| TATTGGGTCATGAGGCAATT+GGG | 0.475842 | 5_4:-60012794 | Msa0860920:intron |
| TCAATTATCAGTGGTTCACC+TGG | 0.479329 | 5_4:+60013073 | None:intergenic |
| ATGTGTTGGTATGGCATCAT+TGG | 0.482347 | 5_4:-60011087 | Msa0860920:CDS |
| GCCTCATGACCCAATATCCT+TGG | 0.489367 | 5_4:+60012801 | None:intergenic |
| CTAGACTTTGTGGAGCAACT+AGG | 0.495288 | 5_4:-60011389 | Msa0860920:CDS |
| GATAATTGAGGAGATCTTTG+TGG | 0.495474 | 5_4:-60013059 | Msa0860920:CDS |
| TTGATACTCAACTTAGATCC+TGG | 0.495669 | 5_4:+60010623 | None:intergenic |
| GAAGTAACAGAAGTTACAAA+AGG | 0.497121 | 5_4:-60012236 | Msa0860920:CDS |
| ATCCTAGCTTCACGTGGCAT+TGG | 0.500201 | 5_4:+60013031 | None:intergenic |
| TTGCTTTGAATGTGTTGGTA+TGG | 0.503086 | 5_4:-60011096 | Msa0860920:CDS |
| ACTGAGGAGGCATGCCCTGT+TGG | 0.511132 | 5_4:+60011971 | None:intergenic |
| AAGAATGGGTACATCAGACT+TGG | 0.513039 | 5_4:+60010538 | None:intergenic |
| CTTATGGGGTCTATATTTGG+AGG | 0.514741 | 5_4:-60010569 | Msa0860920:CDS |
| CAACAACCCATAAGATGTAA+AGG | 0.518832 | 5_4:-60013345 | Msa0860920:intron |
| AGCATATGCTTCATGTAGAA+AGG | 0.522535 | 5_4:-60011057 | Msa0860920:intron |
| ATATTGGGTCATGAGGCAAT+TGG | 0.527994 | 5_4:-60012795 | Msa0860920:CDS |
| TCTTCCATGGCGATGAGTCA+AGG | 0.534652 | 5_4:+60013396 | None:intergenic |
| GATTATTGCTTTGAATGTGT+TGG | 0.539967 | 5_4:-60011101 | Msa0860920:CDS |
| TCCAAGGATATTGGGTCATG+AGG | 0.547263 | 5_4:-60012802 | Msa0860920:CDS |
| AGGGCATGCCTCCTCAGTTG+TGG | 0.551435 | 5_4:-60011966 | Msa0860920:CDS |
| ATGTTAGGAGTGGACAAGCC+AGG | 0.552820 | 5_4:-60010641 | Msa0860920:CDS |
| ATTGTTTCCTAGGTGGCTGA+AGG | 0.554628 | 5_4:-60011414 | Msa0860920:intron |
| CACCAATGCCACGTGAAGCT+AGG | 0.554714 | 5_4:-60013033 | Msa0860920:CDS |
| ACTCGGATGTATTGGATTAG+CGG | 0.554730 | 5_4:-60011781 | Msa0860920:intron |
| TACATATTGACATAATTCAA+GGG | 0.556010 | 5_4:+60010187 | None:intergenic |
| GCTGCGGTGTGTCGCAAACC+AGG | 0.561296 | 5_4:-60013091 | Msa0860920:CDS |
| GTTATCATAGAGATGACTGA+TGG | 0.568363 | 5_4:-60011131 | Msa0860920:CDS |
| TTTAGTGTGGTGGAAAGTGT+TGG | 0.568604 | 5_4:-60012263 | Msa0860920:intron |
| CTTCCATGGCGATGAGTCAA+GGG | 0.578363 | 5_4:+60013397 | None:intergenic |
| AAAACAGCAAATGTTGAACC+GGG | 0.583487 | 5_4:-60011825 | Msa0860920:CDS |
| AGGAGGCATGCCCTGTTGGG+AGG | 0.588882 | 5_4:+60011975 | None:intergenic |
| CAAAAGGAAACTTTGAACAA+AGG | 0.590036 | 5_4:+60012144 | None:intergenic |
| CCTGCTGCAGCAACAAGTGA+AGG | 0.594994 | 5_4:-60013369 | Msa0860920:CDS |
| AGAATGGGTACATCAGACTT+GGG | 0.595366 | 5_4:+60010539 | None:intergenic |
| TCTTCGGTGTGTGATTTGGA+TGG | 0.597231 | 5_4:-60010246 | Msa0860920:CDS |
| AGCAACTAGGATTATAGGTG+TGG | 0.598387 | 5_4:-60011376 | Msa0860920:CDS |
| TTCAAGGGAAGACTCTTATG+GGG | 0.612341 | 5_4:-60010583 | Msa0860920:CDS |
| AGGTGAACCACTGATAATTG+AGG | 0.618418 | 5_4:-60013071 | Msa0860920:CDS |
| TGTGGTGGAAAGTGTTGGAG+AGG | 0.623425 | 5_4:-60012258 | Msa0860920:CDS |
| GATATCACTGTGACAAAGAG+AGG | 0.624489 | 5_4:+60012994 | None:intergenic |
| TCCAGCAATTCCTCCCAACA+GGG | 0.631418 | 5_4:-60011985 | Msa0860920:CDS |
| CCTCCCTTGACTCATCGCCA+TGG | 0.635431 | 5_4:-60013400 | Msa0860920:exon |
| AAAATAGCTACTGTCGACCC+CGG | 0.636859 | 5_4:+60011807 | None:intergenic |
| ATCATAGAGATGACTGATGG+AGG | 0.637658 | 5_4:-60011128 | Msa0860920:CDS |
| TTGATACACCACAACTGAGG+AGG | 0.646650 | 5_4:+60011958 | None:intergenic |
| ATTTAGATCAGTGAATCTAG+TGG | 0.650022 | 5_4:+60012091 | None:intergenic |
| CCATGGCGATGAGTCAAGGG+AGG | 0.650108 | 5_4:+60013400 | None:intergenic |
| GTATCATATCTAAGCATCCA+AGG | 0.653021 | 5_4:+60012113 | None:intergenic |
| AAGATCTCCTCAATTATCAG+TGG | 0.664996 | 5_4:+60013064 | None:intergenic |
| AGATCAAATATAGAAGTCAG+AGG | 0.675333 | 5_4:+60010149 | None:intergenic |
| CATGGCGATGAGTCAAGGGA+GGG | 0.678909 | 5_4:+60013401 | None:intergenic |
| ATACGAATCCTAGCTTCACG+TGG | 0.710856 | 5_4:+60013025 | None:intergenic |
| CTGTTGATACACCACAACTG+AGG | 0.718420 | 5_4:+60011955 | None:intergenic |
| AAACAGCAAATGTTGAACCG+GGG | 0.725303 | 5_4:-60011824 | Msa0860920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTACTTTTGA+AGG | - | chr5_4:60010924-60010943 | Msa0860920:intron | 10.0% |
| !! | AACAAAAGATAAAATATAAT+TGG | + | chr5_4:60012210-60012229 | None:intergenic | 10.0% |
| !!! | AAAAATCAAAGTATCTTTTT+AGG | - | chr5_4:60010132-60010151 | Msa0860920:three_prime_UTR | 15.0% |
| !! | TAATACCTTCTAAATAAATA+GGG | + | chr5_4:60010192-60010211 | None:intergenic | 15.0% |
| !! | ATAATACCTTCTAAATAAAT+AGG | + | chr5_4:60010193-60010212 | None:intergenic | 15.0% |
| !!! | TAATATTTTTGATAGTGAAA+GGG | + | chr5_4:60010261-60010280 | None:intergenic | 15.0% |
| !!! | ATAATATTTTTGATAGTGAA+AGG | + | chr5_4:60010262-60010281 | None:intergenic | 15.0% |
| !! | TATTATCAAATTAAATTGCA+TGG | + | chr5_4:60010524-60010543 | None:intergenic | 15.0% |
| !! | TAAATTAATATCACGTTAAA+TGG | + | chr5_4:60011315-60011334 | None:intergenic | 15.0% |
| !! | ATTTAATGTTTATATGTTCT+TGG | - | chr5_4:60011330-60011349 | Msa0860920:intron | 15.0% |
| !!! | TTTATCAAACATCAATTTTT+AGG | - | chr5_4:60011901-60011920 | Msa0860920:intron | 15.0% |
| !!! | TTATCAAACATCAATTTTTA+GGG | - | chr5_4:60011902-60011921 | Msa0860920:intron | 15.0% |
| !! | AATCAAAAAAAGAAATTACA+TGG | + | chr5_4:60013277-60013296 | None:intergenic | 15.0% |
| !!! | AAAAGATATTTTGGAGATTT+TGG | + | chr5_4:60010295-60010314 | None:intergenic | 20.0% |
| !!! | ATGTAACTGAAAAGATATTT+TGG | + | chr5_4:60010304-60010323 | None:intergenic | 20.0% |
| !! | AAAAAACACTATGAATGTAA+TGG | - | chr5_4:60010626-60010645 | Msa0860920:CDS | 20.0% |
| !! | ATACAAATTAGTAAAATGCA+TGG | + | chr5_4:60011006-60011025 | None:intergenic | 20.0% |
| !! | ATATTTCTCATTTCCTAATT+AGG | - | chr5_4:60011046-60011065 | Msa0860920:intron | 20.0% |
| !!! | AATTTTTATGTGATTTAGTG+TGG | - | chr5_4:60011489-60011508 | Msa0860920:intron | 20.0% |
| !!! | TATCAAACATCAATTTTTAG+GGG | - | chr5_4:60011903-60011922 | Msa0860920:intron | 20.0% |
| !!! | TTACCAATTTCAAATTTTTC+TGG | + | chr5_4:60012423-60012442 | None:intergenic | 20.0% |
| !!! | CTTTATTTTAACCATGTTAT+TGG | - | chr5_4:60012784-60012803 | Msa0860920:intron | 20.0% |
| !! | GTGCAATATTCAATATTATT+TGG | - | chr5_4:60013026-60013045 | Msa0860920:CDS | 20.0% |
| !!! | TAGTAATGTCAACAAATTTT+TGG | - | chr5_4:60013372-60013391 | Msa0860920:CDS | 20.0% |
| !!! | CAAATTTTTGGACTTTTTAT+TGG | - | chr5_4:60013384-60013403 | Msa0860920:CDS | 20.0% |
| !!! | TTTTTTCTCCAATTATTATC+AGG | - | chr5_4:60013411-60013430 | Msa0860920:intron | 20.0% |
| !! | TACATATTGACATAATTCAA+GGG | + | chr5_4:60013581-60013600 | None:intergenic | 20.0% |
| !! | TTACATATTGACATAATTCA+AGG | + | chr5_4:60013582-60013601 | None:intergenic | 20.0% |
| ! | AGTATCCCTATTTATTTAGA+AGG | - | chr5_4:60010184-60010203 | Msa0860920:three_prime_UTR | 25.0% |
| ! | GTTATGTTGTAATGAATCAT+GGG | + | chr5_4:60010461-60010480 | None:intergenic | 25.0% |
| ! | AGTTATGTTGTAATGAATCA+TGG | + | chr5_4:60010462-60010481 | None:intergenic | 25.0% |
| !!! | TATCATATTTTGGAAAATGC+AGG | - | chr5_4:60010790-60010809 | Msa0860920:intron | 25.0% |
| ! | ATTAGCTCAAATAATGAAAG+TGG | + | chr5_4:60011272-60011291 | None:intergenic | 25.0% |
| ! | AATATCACGTTAAATGGAAT+TGG | + | chr5_4:60011309-60011328 | None:intergenic | 25.0% |
| !!! | TCAAAAATTGGTAATGACAA+GGG | + | chr5_4:60011359-60011378 | None:intergenic | 25.0% |
| !!! | ATTTAGTTTGGATTGTTAAC+CGG | + | chr5_4:60011397-60011416 | None:intergenic | 25.0% |
| ! | ACAATCCAAACTAAATATGT+TGG | - | chr5_4:60011401-60011420 | Msa0860920:CDS | 25.0% |
| !! | TTCCTTTTGATATTAAACCT+TGG | - | chr5_4:60011635-60011654 | Msa0860920:intron | 25.0% |
| ! | ATCCAAGGTTTAATATCAAA+AGG | + | chr5_4:60011640-60011659 | None:intergenic | 25.0% |
| ! | AACTAGAGACAAATATGAAA+TGG | + | chr5_4:60011714-60011733 | None:intergenic | 25.0% |
| ! | CAAAACGAAAACATAAACTA+AGG | + | chr5_4:60012020-60012039 | None:intergenic | 25.0% |
| !! | TATGTTTTCGTTTTGTAGTT+TGG | - | chr5_4:60012025-60012044 | Msa0860920:CDS | 25.0% |
| !! | ATGTTTTCGTTTTGTAGTTT+GGG | - | chr5_4:60012026-60012045 | Msa0860920:CDS | 25.0% |
| ! | TTTAGCATACAAAACTACAA+AGG | + | chr5_4:60012314-60012333 | None:intergenic | 25.0% |
| ! | TTGTAATTGAATTGTTTCCT+AGG | - | chr5_4:60012341-60012360 | Msa0860920:intron | 25.0% |
| !! | AAGCCAGAAAAATTTGAAAT+TGG | - | chr5_4:60012417-60012436 | Msa0860920:intron | 25.0% |
| ! | ATTGTGGATGAAAAAAAATG+TGG | + | chr5_4:60012900-60012919 | None:intergenic | 25.0% |
| !!! | AAAATTGGTGTTTTGATTTC+AGG | - | chr5_4:60013084-60013103 | Msa0860920:CDS | 25.0% |
| !!! | AAATTGGTGTTTTGATTTCA+GGG | - | chr5_4:60013085-60013104 | Msa0860920:CDS | 25.0% |
| ! | AAAAACAATTATGTTAGGAG+TGG | - | chr5_4:60013114-60013133 | Msa0860920:intron | 25.0% |
| ! | ATGTAGCGTTTAAAAAGAAT+GGG | + | chr5_4:60013244-60013263 | None:intergenic | 25.0% |
| ! | ATAAAATGTTACCAAAAGAG+AGG | + | chr5_4:60013320-60013339 | None:intergenic | 25.0% |
| ! | ATTGAGTTCCTGATAATAAT+TGG | + | chr5_4:60013422-60013441 | None:intergenic | 25.0% |
| ! | TTATTATCAGGAACTCAATT+TGG | - | chr5_4:60013423-60013442 | Msa0860920:intron | 25.0% |
| !!! | GCTTTTGATTTATTGACTAA+AGG | - | chr5_4:60013490-60013509 | Msa0860920:intron | 25.0% |
| !! | TTTTGGAGATTTTGGAGAAA+GGG | + | chr5_4:60010287-60010306 | None:intergenic | 30.0% |
| !! | ATTTTGGAGATTTTGGAGAA+AGG | + | chr5_4:60010288-60010307 | None:intergenic | 30.0% |
| ! | ATTTGCAAATTTTGTAGCTG+CGG | - | chr5_4:60010658-60010677 | Msa0860920:CDS | 30.0% |
| ! | GTCACAGTGATATCATATTT+TGG | - | chr5_4:60010780-60010799 | Msa0860920:intron | 30.0% |
| AATATCCTTGGAAAAATTGC+AGG | + | chr5_4:60010955-60010974 | None:intergenic | 30.0% | |
| ! | TGCAATTTTTCCAAGGATAT+TGG | - | chr5_4:60010954-60010973 | Msa0860920:intron | 30.0% |
| ! | GCAATTTTTCCAAGGATATT+GGG | - | chr5_4:60010955-60010974 | Msa0860920:intron | 30.0% |
| CTCATTTCCTAATTAGGTAA+AGG | - | chr5_4:60011052-60011071 | Msa0860920:intron | 30.0% | |
| TTTCCTAATTAGGTAAAGGA+AGG | - | chr5_4:60011056-60011075 | Msa0860920:intron | 30.0% | |
| !! | CTCAAAAATTGGTAATGACA+AGG | + | chr5_4:60011360-60011379 | None:intergenic | 30.0% |
| !! | CATTACCAATTTTTGAGAGT+CGG | - | chr5_4:60011363-60011382 | Msa0860920:CDS | 30.0% |
| TGAGACCAACATATTTAGTT+TGG | + | chr5_4:60011409-60011428 | None:intergenic | 30.0% | |
| ! | TTTTATGTGATTTAGTGTGG+TGG | - | chr5_4:60011492-60011511 | Msa0860920:intron | 30.0% |
| GAAGTAACAGAAGTTACAAA+AGG | - | chr5_4:60011529-60011548 | Msa0860920:intron | 30.0% | |
| CAAAAGGAAACTTTGAACAA+AGG | + | chr5_4:60011624-60011643 | None:intergenic | 30.0% | |
| ATTTAGATCAGTGAATCTAG+TGG | + | chr5_4:60011677-60011696 | None:intergenic | 30.0% | |
| ACTAGATTCACTGATCTAAA+TGG | - | chr5_4:60011676-60011695 | Msa0860920:intron | 30.0% | |
| !!! | TAGTTTTAGTGAGTATACTG+TGG | - | chr5_4:60011729-60011748 | Msa0860920:intron | 30.0% |
| !! | AAACATCAATTTTTAGGGGT+AGG | - | chr5_4:60011907-60011926 | Msa0860920:intron | 30.0% |
| GTAGATAAGCTCAAATAAGT+CGG | + | chr5_4:60012062-60012081 | None:intergenic | 30.0% | |
| ACTTATTTGAGCTTATCTAC+TGG | - | chr5_4:60012062-60012081 | Msa0860920:CDS | 30.0% | |
| GTTGTTCTCATAGACTATTA+TGG | + | chr5_4:60012165-60012184 | None:intergenic | 30.0% | |
| ! | AAAACTACAAAGGTTTTGCT+TGG | + | chr5_4:60012304-60012323 | None:intergenic | 30.0% |
| TAATTGAATTGTTTCCTAGG+TGG | - | chr5_4:60012344-60012363 | Msa0860920:intron | 30.0% | |
| AAACTTCTTCGCTGAATAAA+GGG | + | chr5_4:60012560-60012579 | None:intergenic | 30.0% | |
| ! | GATTATTGCTTTGAATGTGT+TGG | - | chr5_4:60012664-60012683 | Msa0860920:intron | 30.0% |
| TGAAAAAAAATGTGGTTGGA+AGG | + | chr5_4:60012892-60012911 | None:intergenic | 30.0% | |
| TGGATGAAAAAAAATGTGGT+TGG | + | chr5_4:60012896-60012915 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCATCCACAATGCT+TGG | - | chr5_4:60012903-60012922 | Msa0860920:intron | 30.0% |
| TTGCACACAAATGAAGAATA+TGG | + | chr5_4:60013012-60013031 | None:intergenic | 30.0% | |
| ! | TACTTGTTGAAAGAATGGAT+TGG | - | chr5_4:60013061-60013080 | Msa0860920:CDS | 30.0% |
| !! | GAAAGAATGGATTGGAAAAT+TGG | - | chr5_4:60013069-60013088 | Msa0860920:CDS | 30.0% |
| TGGGGAAAAACAATTATGTT+AGG | - | chr5_4:60013109-60013128 | Msa0860920:intron | 30.0% | |
| CATGTAGCGTTTAAAAAGAA+TGG | + | chr5_4:60013245-60013264 | None:intergenic | 30.0% | |
| ! | CATTCTTTTTAAACGCTACA+TGG | - | chr5_4:60013243-60013262 | Msa0860920:intron | 30.0% |
| AGATCAAATATAGAAGTCAG+AGG | + | chr5_4:60013619-60013638 | None:intergenic | 30.0% | |
| ! | CTTTACATCTTATGGGTTGT+TGG | + | chr5_4:60010422-60010441 | None:intergenic | 35.0% |
| CAACAACCCATAAGATGTAA+AGG | - | chr5_4:60010420-60010439 | Msa0860920:intron | 35.0% | |
| CACACACCTTTACATCTTAT+GGG | + | chr5_4:60010429-60010448 | None:intergenic | 35.0% | |
| ACACACACCTTTACATCTTA+TGG | + | chr5_4:60010430-60010449 | None:intergenic | 35.0% | |
| AAGATCTCCTCAATTATCAG+TGG | + | chr5_4:60010704-60010723 | None:intergenic | 35.0% | |
| GATAATTGAGGAGATCTTTG+TGG | - | chr5_4:60010706-60010725 | Msa0860920:intron | 35.0% | |
| CTTCCTTCCTTTACCTAATT+AGG | + | chr5_4:60011062-60011081 | None:intergenic | 35.0% | |
| TTATTACTACCCTGTTTGTG+TGG | - | chr5_4:60011089-60011108 | Msa0860920:CDS | 35.0% | |
| CATTGTTATCCCAATCTTCA+TGG | - | chr5_4:60011555-60011574 | Msa0860920:intron | 35.0% | |
| GTATCATATCTAAGCATCCA+AGG | + | chr5_4:60011655-60011674 | None:intergenic | 35.0% | |
| TGGATCAATCTTGAGTAGAT+TGG | + | chr5_4:60011764-60011783 | None:intergenic | 35.0% | |
| TCAACAGGTATGCAAATTCA+AGG | - | chr5_4:60011826-60011845 | Msa0860920:CDS | 35.0% | |
| GAAAACAGCAAATGTTGAAC+CGG | - | chr5_4:60011939-60011958 | Msa0860920:intron | 35.0% | |
| AAAACAGCAAATGTTGAACC+GGG | - | chr5_4:60011940-60011959 | Msa0860920:intron | 35.0% | |
| !!! | ACAGTAGCTATTTTTGGACT+CGG | - | chr5_4:60011967-60011986 | Msa0860920:CDS | 35.0% |
| !! | ATTTTTGGACTCGGATGTAT+TGG | - | chr5_4:60011976-60011995 | Msa0860920:CDS | 35.0% |
| AACTTCTTCGCTGAATAAAG+GGG | + | chr5_4:60012559-60012578 | None:intergenic | 35.0% | |
| CAAACTTCTTCGCTGAATAA+AGG | + | chr5_4:60012561-60012580 | None:intergenic | 35.0% | |
| CTTTATTCAGCGAAGAAGTT+TGG | - | chr5_4:60012559-60012578 | Msa0860920:intron | 35.0% | |
| CTTTGTAAATCCTGGAGAAT+TGG | - | chr5_4:60012591-60012610 | Msa0860920:intron | 35.0% | |
| !! | GATTTGTTTTCCAATTCTCC+AGG | + | chr5_4:60012604-60012623 | None:intergenic | 35.0% |
| GTTATCATAGAGATGACTGA+TGG | - | chr5_4:60012634-60012653 | Msa0860920:intron | 35.0% | |
| ! | TTGCTTTGAATGTGTTGGTA+TGG | - | chr5_4:60012669-60012688 | Msa0860920:intron | 35.0% |
| AGCATATGCTTCATGTAGAA+AGG | - | chr5_4:60012708-60012727 | Msa0860920:intron | 35.0% | |
| GATACTTTGCACCAATAACA+TGG | + | chr5_4:60012798-60012817 | None:intergenic | 35.0% | |
| AGATTAGTAATCGGCAAAGT+CGG | + | chr5_4:60012823-60012842 | None:intergenic | 35.0% | |
| AGTTGGCAGAGATTAGTAAT+CGG | + | chr5_4:60012832-60012851 | None:intergenic | 35.0% | |
| ! | CTGCATACTTGTTGAAAGAA+TGG | - | chr5_4:60013056-60013075 | Msa0860920:CDS | 35.0% |
| TTGATACTCAACTTAGATCC+TGG | + | chr5_4:60013145-60013164 | None:intergenic | 35.0% | |
| !!! | AGTACTGATGTCCTTTTTCA+AGG | - | chr5_4:60013166-60013185 | Msa0860920:intron | 35.0% |
| !!! | GTACTGATGTCCTTTTTCAA+GGG | - | chr5_4:60013167-60013186 | Msa0860920:intron | 35.0% |
| TAAGAGTCTTCCCTTGAAAA+AGG | + | chr5_4:60013180-60013199 | None:intergenic | 35.0% | |
| !! | TTTTCAAGGGAAGACTCTTA+TGG | - | chr5_4:60013180-60013199 | Msa0860920:intron | 35.0% |
| TTTCAAGGGAAGACTCTTAT+GGG | - | chr5_4:60013181-60013200 | Msa0860920:intron | 35.0% | |
| ACTCTTATGGGGTCTATATT+TGG | - | chr5_4:60013193-60013212 | Msa0860920:intron | 35.0% | |
| ! | TTTTAAACGCTACATGGACA+AGG | - | chr5_4:60013249-60013268 | Msa0860920:intron | 35.0% |
| ! | TATGATCTCTTCCTCTCTTT+TGG | - | chr5_4:60013306-60013325 | Msa0860920:intron | 35.0% |
| ! | GGATGATTTTGTTACACATG+AGG | - | chr5_4:60013444-60013463 | Msa0860920:intron | 35.0% |
| ! | TGATTTTGTTACACATGAGG+TGG | - | chr5_4:60013447-60013466 | Msa0860920:intron | 35.0% |
| TGACTAAAGGAGAATGTCTT+CGG | - | chr5_4:60013503-60013522 | Msa0860920:intron | 35.0% | |
| TCAATTATCAGTGGTTCACC+TGG | + | chr5_4:60010695-60010714 | None:intergenic | 40.0% | |
| AGGTGAACCACTGATAATTG+AGG | - | chr5_4:60010694-60010713 | Msa0860920:intron | 40.0% | |
| GATATCACTGTGACAAAGAG+AGG | + | chr5_4:60010774-60010793 | None:intergenic | 40.0% | |
| ATCCTTGGAAAAATTGCAGG+AGG | + | chr5_4:60010952-60010971 | None:intergenic | 40.0% | |
| ATATTGGGTCATGAGGCAAT+TGG | - | chr5_4:60010970-60010989 | Msa0860920:intron | 40.0% | |
| TATTGGGTCATGAGGCAATT+GGG | - | chr5_4:60010971-60010990 | Msa0860920:intron | 40.0% | |
| AGTGTATGACCACACAAACA+GGG | + | chr5_4:60011101-60011120 | None:intergenic | 40.0% | |
| CTCACATTGCCAAAGTTCTT+AGG | - | chr5_4:60011223-60011242 | Msa0860920:intron | 40.0% | |
| CATTGCAGACCTAAGAACTT+TGG | + | chr5_4:60011235-60011254 | None:intergenic | 40.0% | |
| TTGGATTGTTAACCGGACTT+CGG | + | chr5_4:60011390-60011409 | None:intergenic | 40.0% | |
| ! | TTTAGTGTGGTGGAAAGTGT+TGG | - | chr5_4:60011502-60011521 | Msa0860920:intron | 40.0% |
| CACAATCAGCCATGAAGATT+GGG | + | chr5_4:60011567-60011586 | None:intergenic | 40.0% | |
| TCACAATCAGCCATGAAGAT+TGG | + | chr5_4:60011568-60011587 | None:intergenic | 40.0% | |
| AAACAGCAAATGTTGAACCG+GGG | - | chr5_4:60011941-60011960 | Msa0860920:intron | 40.0% | |
| ! | ACTCGGATGTATTGGATTAG+CGG | - | chr5_4:60011984-60012003 | Msa0860920:CDS | 40.0% |
| !! | GATGTATTGGATTAGCGGTA+TGG | - | chr5_4:60011989-60012008 | Msa0860920:CDS | 40.0% |
| ! | TTTTGTAGTTTGGGCCTGTT+TGG | - | chr5_4:60012035-60012054 | Msa0860920:CDS | 40.0% |
| TCAAATAAGTCGGTCCAAAC+AGG | + | chr5_4:60012052-60012071 | None:intergenic | 40.0% | |
| TGTGGAGCAACTAGGATTAT+AGG | - | chr5_4:60012384-60012403 | Msa0860920:intron | 40.0% | |
| AGCAACTAGGATTATAGGTG+TGG | - | chr5_4:60012389-60012408 | Msa0860920:intron | 40.0% | |
| GTCACAGACTTTGTAAATCC+TGG | - | chr5_4:60012583-60012602 | Msa0860920:intron | 40.0% | |
| GGAAAACAAATCTGTGAGTC+AGG | - | chr5_4:60012612-60012631 | Msa0860920:intron | 40.0% | |
| ATCATAGAGATGACTGATGG+AGG | - | chr5_4:60012637-60012656 | Msa0860920:intron | 40.0% | |
| ! | ATGTGTTGGTATGGCATCAT+TGG | - | chr5_4:60012678-60012697 | Msa0860920:intron | 40.0% |
| TGGAAGGATAGACTCCATAA+GGG | + | chr5_4:60012876-60012895 | None:intergenic | 40.0% | |
| TTGGAAGGATAGACTCCATA+AGG | + | chr5_4:60012877-60012896 | None:intergenic | 40.0% | |
| !!! | TGGTGTTTTGATTTCAGGGT+TGG | - | chr5_4:60013089-60013108 | Msa0860920:CDS | 40.0% |
| !!! | GGTGTTTTGATTTCAGGGTT+GGG | - | chr5_4:60013090-60013109 | Msa0860920:CDS | 40.0% |
| !!! | GTGTTTTGATTTCAGGGTTG+GGG | - | chr5_4:60013091-60013110 | Msa0860920:CDS | 40.0% |
| TTCAAGGGAAGACTCTTATG+GGG | - | chr5_4:60013182-60013201 | Msa0860920:intron | 40.0% | |
| CTTATGGGGTCTATATTTGG+AGG | - | chr5_4:60013196-60013215 | Msa0860920:intron | 40.0% | |
| AGAATGGGTACATCAGACTT+GGG | + | chr5_4:60013229-60013248 | None:intergenic | 40.0% | |
| AAGAATGGGTACATCAGACT+TGG | + | chr5_4:60013230-60013249 | None:intergenic | 40.0% | |
| ! | AATGTCTTCGGTGTGTGATT+TGG | - | chr5_4:60013515-60013534 | Msa0860920:intron | 40.0% |
| TGCAGCAGGTTTATCTTCCA+TGG | + | chr5_4:60010385-60010404 | None:intergenic | 45.0% | |
| ATACGAATCCTAGCTTCACG+TGG | + | chr5_4:60010743-60010762 | None:intergenic | 45.0% | |
| ! | AGCCTCCTGCAATTTTTCCA+AGG | - | chr5_4:60010947-60010966 | Msa0860920:intron | 45.0% |
| TCCAAGGATATTGGGTCATG+AGG | - | chr5_4:60010963-60010982 | Msa0860920:intron | 45.0% | |
| GAGTGTATGACCACACAAAC+AGG | + | chr5_4:60011102-60011121 | None:intergenic | 45.0% | |
| TTGTTAACTACGTGCATGCG+TGG | + | chr5_4:60011124-60011143 | None:intergenic | 45.0% | |
| TCGGTCCGACTCTCAAAAAT+TGG | + | chr5_4:60011371-60011390 | None:intergenic | 45.0% | |
| TTGATACACCACAACTGAGG+AGG | + | chr5_4:60011810-60011829 | None:intergenic | 45.0% | |
| CTGTTGATACACCACAACTG+AGG | + | chr5_4:60011813-60011832 | None:intergenic | 45.0% | |
| CTCAGTTGTGGTGTATCAAC+AGG | - | chr5_4:60011811-60011830 | Msa0860920:CDS | 45.0% | |
| AAAATAGCTACTGTCGACCC+CGG | + | chr5_4:60011961-60011980 | None:intergenic | 45.0% | |
| !! | GGGTCGACAGTAGCTATTTT+TGG | - | chr5_4:60011961-60011980 | Msa0860920:CDS | 45.0% |
| ATTGTTTCCTAGGTGGCTGA+AGG | - | chr5_4:60012351-60012370 | Msa0860920:intron | 45.0% | |
| CTAGACTTTGTGGAGCAACT+AGG | - | chr5_4:60012376-60012395 | Msa0860920:intron | 45.0% | |
| TTCTTCGCTGAATAAAGGGG+AGG | + | chr5_4:60012556-60012575 | None:intergenic | 45.0% | |
| CTAATCTCTGCCAACTGTCA+TGG | - | chr5_4:60012836-60012855 | Msa0860920:intron | 45.0% | |
| CAACTAGACACCATGACAGT+TGG | + | chr5_4:60012849-60012868 | None:intergenic | 45.0% | |
| CAACTGTCATGGTGTCTAGT+TGG | - | chr5_4:60012847-60012866 | Msa0860920:intron | 45.0% | |
| AAGGATAGACTCCATAAGGG+TGG | + | chr5_4:60012873-60012892 | None:intergenic | 45.0% | |
| GATCTCTCAAGCAAGGTTTC+GGG | + | chr5_4:60012930-60012949 | None:intergenic | 45.0% | |
| GGATCTCTCAAGCAAGGTTT+CGG | + | chr5_4:60012931-60012950 | None:intergenic | 45.0% | |
| CAAAGTTGCATTAGTCCGAG+TGG | + | chr5_4:60012964-60012983 | None:intergenic | 45.0% | |
| CACTCGGACTAATGCAACTT+TGG | - | chr5_4:60012962-60012981 | Msa0860920:intron | 45.0% | |
| ! | TCTTCGGTGTGTGATTTGGA+TGG | - | chr5_4:60013519-60013538 | Msa0860920:intron | 45.0% |
| !! | TAATAAAATAGTATATAATA+TGG | + | chr5_4:60010235-60010254 | None:intergenic | 5.0% |
| !!! | ACATAATATTTTTTTTTTTA+AGG | + | chr5_4:60010602-60010621 | None:intergenic | 5.0% |
| !!! | TTAATTTTTTAACTTTTTTT+TGG | - | chr5_4:60011177-60011196 | Msa0860920:CDS | 5.0% |
| CTTCCATGGCGATGAGTCAA+GGG | + | chr5_4:60010371-60010390 | None:intergenic | 50.0% | |
| TCTTCCATGGCGATGAGTCA+AGG | + | chr5_4:60010372-60010391 | None:intergenic | 50.0% | |
| ATCCTAGCTTCACGTGGCAT+TGG | + | chr5_4:60010737-60010756 | None:intergenic | 50.0% | |
| GCCTCATGACCCAATATCCT+TGG | + | chr5_4:60010967-60010986 | None:intergenic | 50.0% | |
| !! | TGTGGTGGAAAGTGTTGGAG+AGG | - | chr5_4:60011507-60011526 | Msa0860920:intron | 50.0% |
| ATCCAGCAATTCCTCCCAAC+AGG | - | chr5_4:60011779-60011798 | Msa0860920:intron | 50.0% | |
| TCCAGCAATTCCTCCCAACA+GGG | - | chr5_4:60011780-60011799 | Msa0860920:intron | 50.0% | |
| !! | TTTTAGGGGTAGGTGCTGCA+TGG | - | chr5_4:60011917-60011936 | Msa0860920:intron | 50.0% |
| GCTGAAGGAGCTAGACTTTG+TGG | - | chr5_4:60012366-60012385 | Msa0860920:intron | 50.0% | |
| TGTCTAGTTGGCCACCCTTA+TGG | - | chr5_4:60012859-60012878 | Msa0860920:intron | 50.0% | |
| TGCATTAGTCCGAGTGGAAC+TGG | + | chr5_4:60012958-60012977 | None:intergenic | 50.0% | |
| ATGTTAGGAGTGGACAAGCC+AGG | - | chr5_4:60013124-60013143 | Msa0860920:intron | 50.0% | |
| !! | AGTCAAGGGAGGGTACTGGA+AGG | + | chr5_4:60010357-60010376 | None:intergenic | 55.0% |
| ! | GATGAGTCAAGGGAGGGTAC+TGG | + | chr5_4:60010361-60010380 | None:intergenic | 55.0% |
| CATGGCGATGAGTCAAGGGA+GGG | + | chr5_4:60010367-60010386 | None:intergenic | 55.0% | |
| ! | CCTTCACTTGTTGCTGCAGC+AGG | + | chr5_4:60010399-60010418 | None:intergenic | 55.0% |
| CCTGCTGCAGCAACAAGTGA+AGG | - | chr5_4:60010396-60010415 | Msa0860920:intron | 55.0% | |
| ! | CTAGCTTCACGTGGCATTGG+TGG | + | chr5_4:60010734-60010753 | None:intergenic | 55.0% |
| CACCAATGCCACGTGAAGCT+AGG | - | chr5_4:60010732-60010751 | Msa0860920:intron | 55.0% | |
| TTGAGAGTCGGACCGAAGTC+CGG | - | chr5_4:60011375-60011394 | Msa0860920:CDS | 55.0% | |
| ! | TCTAGCTCCTTCAGCCACCT+AGG | + | chr5_4:60012361-60012380 | None:intergenic | 55.0% |
| ! | GGTTTCGGGTCCAAGCATTG+TGG | + | chr5_4:60012916-60012935 | None:intergenic | 55.0% |
| GGACTCGGATCTCTCAAGCA+AGG | + | chr5_4:60012937-60012956 | None:intergenic | 55.0% | |
| GATCCGAGTCCAGTTCCACT+CGG | - | chr5_4:60012946-60012965 | Msa0860920:intron | 55.0% | |
| AGTCCGAGTGGAACTGGACT+CGG | + | chr5_4:60012952-60012971 | None:intergenic | 55.0% | |
| CCATGGCGATGAGTCAAGGG+AGG | + | chr5_4:60010368-60010387 | None:intergenic | 60.0% | |
| CCTCCCTTGACTCATCGCCA+TGG | - | chr5_4:60010365-60010384 | Msa0860920:intron | 60.0% | |
| GCCCTGTTGGGAGGAATTGC+TGG | + | chr5_4:60011784-60011803 | None:intergenic | 60.0% | |
| ! | CTGAGGAGGCATGCCCTGTT+GGG | + | chr5_4:60011796-60011815 | None:intergenic | 60.0% |
| ! | ACTGAGGAGGCATGCCCTGT+TGG | + | chr5_4:60011797-60011816 | None:intergenic | 60.0% |
| AGGGCATGCCTCCTCAGTTG+TGG | - | chr5_4:60011799-60011818 | Msa0860920:CDS | 60.0% | |
| GCTGCGGTGTGTCGCAAACC+AGG | - | chr5_4:60010674-60010693 | Msa0860920:intron | 65.0% | |
| ! | AGGAGGCATGCCCTGTTGGG+AGG | + | chr5_4:60011793-60011812 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 60010132 | 60013655 | 60010132 | ID=Msa0860920;Name=Msa0860920 |
| chr5_4 | mRNA | 60010132 | 60013655 | 60010132 | ID=Msa0860920-mRNA-1;Parent=Msa0860920;Name=Msa0860920-mRNA-1;_AED=0.10;_eAED=0.10;_QI=96|1|1|1|0.88|0.8|10|106|389 |
| chr5_4 | exon | 60010132 | 60010354 | 60010132 | ID=Msa0860920-mRNA-1:exon:18525;Parent=Msa0860920-mRNA-1 |
| chr5_4 | exon | 60010517 | 60010681 | 60010517 | ID=Msa0860920-mRNA-1:exon:18524;Parent=Msa0860920-mRNA-1 |
| chr5_4 | exon | 60011058 | 60011218 | 60011058 | ID=Msa0860920-mRNA-1:exon:18523;Parent=Msa0860920-mRNA-1 |
| chr5_4 | exon | 60011349 | 60011424 | 60011349 | ID=Msa0860920-mRNA-1:exon:18522;Parent=Msa0860920-mRNA-1 |
| chr5_4 | exon | 60011782 | 60011864 | 60011782 | ID=Msa0860920-mRNA-1:exon:18521;Parent=Msa0860920-mRNA-1 |
| chr5_4 | exon | 60011955 | 60012280 | 60011955 | ID=Msa0860920-mRNA-1:exon:18520;Parent=Msa0860920-mRNA-1 |
| chr5_4 | exon | 60012795 | 60012841 | 60012795 | ID=Msa0860920-mRNA-1:exon:18519;Parent=Msa0860920-mRNA-1 |
| chr5_4 | exon | 60012976 | 60013112 | 60012976 | ID=Msa0860920-mRNA-1:exon:18518;Parent=Msa0860920-mRNA-1 |
| chr5_4 | exon | 60013346 | 60013425 | 60013346 | ID=Msa0860920-mRNA-1:exon:18517;Parent=Msa0860920-mRNA-1 |
| chr5_4 | exon | 60013582 | 60013655 | 60013582 | ID=Msa0860920-mRNA-1:exon:18516;Parent=Msa0860920-mRNA-1 |
| chr5_4 | five_prime_UTR | 60013582 | 60013655 | 60013582 | ID=Msa0860920-mRNA-1:five_prime_utr;Parent=Msa0860920-mRNA-1 |
| chr5_4 | five_prime_UTR | 60013404 | 60013425 | 60013404 | ID=Msa0860920-mRNA-1:five_prime_utr;Parent=Msa0860920-mRNA-1 |
| chr5_4 | CDS | 60013346 | 60013403 | 60013346 | ID=Msa0860920-mRNA-1:cds;Parent=Msa0860920-mRNA-1 |
| chr5_4 | CDS | 60012976 | 60013112 | 60012976 | ID=Msa0860920-mRNA-1:cds;Parent=Msa0860920-mRNA-1 |
| chr5_4 | CDS | 60012795 | 60012841 | 60012795 | ID=Msa0860920-mRNA-1:cds;Parent=Msa0860920-mRNA-1 |
| chr5_4 | CDS | 60011955 | 60012280 | 60011955 | ID=Msa0860920-mRNA-1:cds;Parent=Msa0860920-mRNA-1 |
| chr5_4 | CDS | 60011782 | 60011864 | 60011782 | ID=Msa0860920-mRNA-1:cds;Parent=Msa0860920-mRNA-1 |
| chr5_4 | CDS | 60011349 | 60011424 | 60011349 | ID=Msa0860920-mRNA-1:cds;Parent=Msa0860920-mRNA-1 |
| chr5_4 | CDS | 60011058 | 60011218 | 60011058 | ID=Msa0860920-mRNA-1:cds;Parent=Msa0860920-mRNA-1 |
| chr5_4 | CDS | 60010517 | 60010681 | 60010517 | ID=Msa0860920-mRNA-1:cds;Parent=Msa0860920-mRNA-1 |
| chr5_4 | CDS | 60010238 | 60010354 | 60010238 | ID=Msa0860920-mRNA-1:cds;Parent=Msa0860920-mRNA-1 |
| chr5_4 | three_prime_UTR | 60010132 | 60010237 | 60010132 | ID=Msa0860920-mRNA-1:three_prime_utr;Parent=Msa0860920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
