AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0810060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0810060 MtrunA17_Chr5g0426281 98.964 676 5 2 1 675 1 675 0.0 1377
Msa0810060 MtrunA17_Chr3g0115931 76.623 693 142 4 1 674 1 692 0.0 1118
Msa0810060 MtrunA17_Chr4g0043121 47.619 420 194 8 74 476 15 425 2.89e-134 401
Msa0810060 MtrunA17_Chr1g0187601 37.409 548 300 10 144 670 89 614 1.20e-118 368
Msa0810060 MtrunA17_Chr1g0167381 37.739 522 285 10 144 648 90 588 1.92e-115 359
Msa0810060 MtrunA17_Chr1g0183721 34.043 611 352 13 72 667 8 582 3.77e-112 350
Msa0810060 MtrunA17_Chr3g0112341 33.702 543 321 12 144 671 151 669 4.52e-104 331
Msa0810060 MtrunA17_Chr7g0246681 33.213 554 322 13 136 671 65 588 4.90e-97 310
Msa0810060 MtrunA17_Chr1g0159741 35.294 527 311 14 151 669 154 658 4.10e-96 310
Msa0810060 MtrunA17_Chr5g0435751 32.096 539 307 11 144 667 123 617 1.13e-95 308
Msa0810060 MtrunA17_Chr1g0203741 31.768 639 351 21 77 670 19 617 2.66e-94 304
Msa0810060 MtrunA17_Chr8g0350351 32.228 543 324 10 144 670 86 600 1.02e-93 302
Msa0810060 MtrunA17_Chr8g0350391 32.155 566 315 16 140 670 99 630 3.01e-93 301
Msa0810060 MtrunA17_Chr1g0171781 34.854 548 304 13 146 670 86 603 4.24e-93 300
Msa0810060 MtrunA17_Chr6g0472571 32.973 555 311 17 149 674 108 630 1.04e-92 300
Msa0810060 MtrunA17_Chr8g0388881 31.551 561 322 17 144 674 96 624 7.90e-92 298
Msa0810060 MtrunA17_Chr5g0437501 32.197 528 295 14 169 675 125 610 1.48e-91 296
Msa0810060 MtrunA17_Chr8g0369481 31.365 542 320 13 149 667 73 585 5.21e-91 295
Msa0810060 MtrunA17_Chr5g0409411 32.541 547 315 14 149 671 75 591 6.42e-91 295
Msa0810060 MtrunA17_Chr3g0130381 33.100 571 311 18 132 671 247 777 7.47e-91 299
Msa0810060 MtrunA17_Chr4g0043131 66.848 184 59 1 489 672 4 185 1.35e-90 279
Msa0810060 MtrunA17_Chr3g0125511 33.273 550 293 17 156 671 234 743 2.42e-90 297
Msa0810060 MtrunA17_Chr3g0113981 31.881 505 297 12 175 671 204 669 2.97e-87 287
Msa0810060 MtrunA17_Chr4g0055031 31.327 565 321 19 136 670 76 603 4.10e-87 285
Msa0810060 MtrunA17_Chr7g0246701 32.246 552 314 18 149 670 104 625 1.30e-86 284
Msa0810060 MtrunA17_Chr7g0214551 32.246 552 311 14 140 660 37 556 1.60e-86 282
Msa0810060 MtrunA17_Chr8g0384431 32.830 530 298 15 151 656 301 796 8.87e-85 283
Msa0810060 MtrunA17_Chr5g0416991 30.212 566 332 16 132 670 70 599 4.74e-84 276
Msa0810060 MtrunA17_Chr8g0361791 30.212 566 333 14 132 670 70 600 7.22e-84 276
Msa0810060 MtrunA17_Chr3g0092501 30.505 554 319 17 144 670 83 597 1.93e-82 272
Msa0810060 MtrunA17_Chr8g0372471 32.108 517 302 13 169 671 410 891 1.67e-80 273
Msa0810060 MtrunA17_Chr1g0155141 31.227 554 306 19 142 671 198 700 4.03e-78 263
Msa0810060 MtrunA17_Chr5g0404761 30.897 301 168 9 388 675 4 277 6.69e-41 150
Msa0810060 MtrunA17_Chr5g0404771 36.406 217 127 5 169 383 353 560 1.42e-36 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0810060 AT1G78240.1 67.435 694 197 8 1 675 1 684 0.0 954
Msa0810060 AT1G78240.2 67.435 694 197 8 1 675 1 684 0.0 954
Msa0810060 AT1G13860.4 52.053 609 276 8 70 672 5 603 0.0 660
Msa0810060 AT1G13860.3 52.053 609 276 8 70 672 5 603 0.0 660
Msa0810060 AT1G13860.1 52.053 609 276 8 70 672 5 603 0.0 660
Msa0810060 AT1G13860.5 52.053 609 276 8 70 672 5 603 0.0 660
Msa0810060 AT2G03480.1 51.378 617 265 10 70 672 11 606 0.0 635
Msa0810060 AT2G03480.2 50.567 617 259 9 70 672 11 595 0.0 624
Msa0810060 AT1G13860.2 56.608 454 185 6 224 672 1 447 0.0 548
Msa0810060 AT2G03480.3 47.981 421 199 8 70 476 11 425 1.03e-127 385
Msa0810060 AT1G04430.1 36.738 607 330 12 84 660 10 592 4.53e-116 361
Msa0810060 AT1G04430.3 36.738 607 330 12 84 660 10 592 4.53e-116 361
Msa0810060 AT1G04430.2 36.738 607 330 12 84 660 10 592 4.53e-116 361
Msa0810060 AT3G23300.2 36.581 544 299 11 149 670 82 601 8.01e-115 358
Msa0810060 AT3G23300.1 36.581 544 299 11 149 670 82 601 8.01e-115 358
Msa0810060 AT5G14430.1 36.625 557 303 11 144 675 78 609 8.60e-112 350
Msa0810060 AT4G14360.1 36.822 516 288 9 149 648 79 572 3.84e-111 348
Msa0810060 AT4G14360.2 36.822 516 288 9 149 648 79 572 3.84e-111 348
Msa0810060 AT5G14430.2 36.266 557 305 11 144 675 78 609 2.31e-110 346
Msa0810060 AT5G06050.1 35.531 546 303 13 144 669 147 663 3.81e-109 345
Msa0810060 AT1G77260.1 34.254 543 308 11 144 667 141 653 2.80e-102 326
Msa0810060 AT2G39750.1 32.364 550 333 12 137 671 168 693 8.48e-102 326
Msa0810060 AT5G04060.1 33.966 527 308 11 153 670 102 597 8.47e-98 313
Msa0810060 AT3G10200.1 35.209 551 297 15 146 670 72 588 9.07e-98 313
Msa0810060 AT4G19120.1 32.982 570 318 16 127 670 59 590 3.53e-96 309
Msa0810060 AT4G19120.2 32.982 570 318 16 127 670 59 590 3.53e-96 309
Msa0810060 AT1G31850.1 32.844 545 310 16 149 667 79 593 1.06e-95 308
Msa0810060 AT1G31850.2 32.844 545 310 16 149 667 79 593 1.06e-95 308
Msa0810060 AT1G31850.4 32.844 545 310 16 149 667 79 593 1.06e-95 308
Msa0810060 AT1G31850.3 32.844 545 310 16 149 667 79 593 1.06e-95 308
Msa0810060 AT4G00740.1 32.573 614 331 16 89 671 33 594 3.93e-95 306
Msa0810060 AT4G00740.2 32.573 614 331 16 89 671 33 594 3.93e-95 306
Msa0810060 AT1G33170.1 32.258 558 316 17 144 670 108 634 9.98e-93 301
Msa0810060 AT4G10440.1 31.598 557 320 16 144 670 91 616 3.34e-92 299
Msa0810060 AT2G43200.2 34.457 534 295 15 149 658 94 596 6.34e-91 295
Msa0810060 AT2G43200.1 34.457 534 295 15 149 658 94 596 6.34e-91 295
Msa0810060 AT4G00750.1 32.865 569 314 19 141 674 91 626 7.26e-91 296
Msa0810060 AT2G45750.1 33.273 550 297 15 148 661 89 604 1.30e-90 295
Msa0810060 AT2G34300.2 32.061 524 296 14 169 671 274 758 2.60e-88 292
Msa0810060 AT2G34300.3 32.061 524 296 14 169 671 274 758 2.60e-88 292
Msa0810060 AT2G34300.1 32.061 524 296 14 169 671 274 758 2.60e-88 292
Msa0810060 AT1G26850.2 31.306 559 326 14 140 670 80 608 3.99e-88 288
Msa0810060 AT1G26850.1 31.306 559 326 14 140 670 80 608 3.99e-88 288
Msa0810060 AT2G40280.1 30.605 562 333 16 123 671 65 582 4.13e-88 287
Msa0810060 AT5G64030.1 32.051 546 314 16 155 675 308 821 1.92e-87 291
Msa0810060 AT1G29470.1 33.333 519 296 14 169 671 274 758 8.12e-87 288
Msa0810060 AT1G29470.2 33.333 519 296 14 169 671 274 758 8.12e-87 288
Msa0810060 AT3G56080.1 31.471 537 292 15 143 651 107 595 1.08e-86 284
Msa0810060 AT3G10200.2 35.130 501 268 14 146 623 72 538 1.84e-86 283
Msa0810060 AT4G18030.1 31.341 552 319 16 146 670 85 603 2.29e-86 283
Msa0810060 AT3G51070.1 32.234 546 305 16 155 671 381 890 2.08e-85 287
Msa0810060 AT1G19430.1 31.481 540 300 17 155 671 231 723 8.61e-76 258
Msa0810060 AT1G19430.3 31.481 540 300 17 155 671 231 723 8.61e-76 258
Msa0810060 AT3G56080.2 31.612 484 258 13 143 598 107 545 4.66e-75 251
Msa0810060 AT3G51070.2 32.981 473 257 14 155 598 381 822 2.57e-74 256
Msa0810060 AT4G19120.3 30.252 476 272 14 127 577 59 499 1.23e-66 228
Msa0810060 AT1G26850.3 29.025 441 261 11 140 555 80 493 2.09e-54 194
Msa0810060 AT1G19430.2 28.780 410 220 14 155 537 231 595 2.59e-38 150

Find 193 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTGGAAAAGATGTTATT+TGG 0.156678 5_3:-38015059 Msa0810060:CDS
TTTATGATAATTATGGAAAT+TGG 0.166001 5_3:+38011364 None:intergenic
TAAACACAATTATTTATTAT+TGG 0.170520 5_3:-38011164 Msa0810060:three_prime_UTR
ACTCTAGCTGATTCTATTAA+AGG 0.186941 5_3:+38011547 None:intergenic
GCAGAACTTTATGATAATTA+TGG 0.199837 5_3:+38011357 None:intergenic
ATAAATAATTCTATGATATA+GGG 0.207007 5_3:+38011074 None:intergenic
CCTAAACTCAAATACCTTTC+TGG 0.213244 5_3:+38013885 None:intergenic
GTTTCTTGAAGAAAGGTTTC+TGG 0.232166 5_3:+38011449 None:intergenic
GCACAAGAGGTTCTTTCTTC+TGG 0.244322 5_3:-38015015 Msa0810060:CDS
TGGATATTGGTGAGATTTCT+AGG 0.258788 5_3:-38015251 Msa0810060:CDS
AATAAATAATTCTATGATAT+AGG 0.269595 5_3:+38011073 None:intergenic
AATTGTTTAGTTTGATCTAA+TGG 0.273439 5_3:+38016580 None:intergenic
CCTCTACATCGAGGTGTTTC+CGG 0.278716 5_3:-38015633 Msa0810060:CDS
AAACACAATTATTTATTATT+GGG 0.280121 5_3:-38011163 Msa0810060:three_prime_UTR
CTCTTGCTTCCCATTTCAGC+TGG 0.280333 5_3:+38011515 None:intergenic
ATAAACTTAAAACGGCTTCT+TGG 0.297657 5_3:+38015423 None:intergenic
TATTATGGTATAGTTTCTTT+AGG 0.298118 5_3:+38011402 None:intergenic
GACCGGGTGGATACTTTGTT+TGG 0.300878 5_3:-38013738 Msa0810060:CDS
AGCAAAACACAAGAGGTTAA+TGG 0.309048 5_3:+38016280 None:intergenic
TCCTCGTCACCGGGCCTCTT+CGG 0.310023 5_3:+38013112 None:intergenic
AGAGGAACTTTGTAATTAAC+TGG 0.318130 5_3:+38015090 None:intergenic
AGAAAGGTTTCTGGCATATC+AGG 0.322309 5_3:+38011458 None:intergenic
AAGCAGCAGTGCAAAATTAT+TGG 0.326097 5_3:-38013168 Msa0810060:CDS
GTTTCAGATTTGTTGGATAT+TGG 0.327113 5_3:-38015264 Msa0810060:CDS
GAAACTTGTTTCAGATTTGT+TGG 0.328549 5_3:-38015271 Msa0810060:CDS
AAATGAATATATGTATATTA+TGG 0.332547 5_3:+38011387 None:intergenic
TCTTAGCAGCCCAGCTGAAA+TGG 0.337346 5_3:-38011525 Msa0810060:CDS
ATTACAAAGTTCCTCTTAGA+TGG 0.341609 5_3:-38015083 Msa0810060:CDS
AGATAGTTAGGTCCAGTTCT+TGG 0.345037 5_3:+38012974 None:intergenic
TACTGGAAAAGATGTTATTT+GGG 0.346347 5_3:-38015058 Msa0810060:CDS
TCAGCCTCTCATATGTTTGA+TGG 0.353415 5_3:-38014731 Msa0810060:CDS
CATCAGATTGCTGAAATGAT+TGG 0.365226 5_3:-38014692 Msa0810060:CDS
CTTGGTGAGCCAACACTGAT+TGG 0.369399 5_3:+38015441 None:intergenic
GGTTGTGGCTATGGTAGCTT+TGG 0.380939 5_3:-38014097 Msa0810060:CDS
TGAGCAGAGTCAAAATTGTT+TGG 0.393888 5_3:-38015121 Msa0810060:CDS
TAGACTTGTGATTCTTCAAC+TGG 0.394563 5_3:-38015828 Msa0810060:five_prime_UTR
ATCTGTTCATTGAAATTGAC+AGG 0.398613 5_3:-38012354 Msa0810060:CDS
ACTGGAGCTGGATTCTCAAA+AGG 0.399790 5_3:-38015810 Msa0810060:five_prime_UTR
GATAGTTAGGTCCAGTTCTT+GGG 0.401757 5_3:+38012975 None:intergenic
AGTAAACAACACTCTTGTAT+TGG 0.408596 5_3:-38015756 Msa0810060:five_prime_UTR
AAGGAGACCTCAATGCTAAA+GGG 0.408924 5_3:+38015508 None:intergenic
TGGATCAAGGGAAGATAGTT+AGG 0.412196 5_3:+38012962 None:intergenic
TCAAAAGACAGAGATGGATA+TGG 0.414142 5_3:+38013944 None:intergenic
TACATAACAATTACCATGTA+TGG 0.417975 5_3:+38013308 None:intergenic
GTGCAAGATGTGGCATTGAT+TGG 0.420971 5_3:-38013910 Msa0810060:CDS
TGCTTCAAGGTGGAAAGAAT+TGG 0.422058 5_3:-38015226 Msa0810060:CDS
GGATGATCAGAAAATATTAC+AGG 0.422300 5_3:+38013133 None:intergenic
ATGAACGTGGTCCCAAGAAC+TGG 0.422464 5_3:-38012986 Msa0810060:CDS
GCATGGTGCACCTAAGCGGC+TGG 0.426485 5_3:+38012380 None:intergenic
TGTGATTCTTCAACTGGAGC+TGG 0.427549 5_3:-38015822 Msa0810060:five_prime_UTR
GGATATTGGTGAGATTTCTA+GGG 0.429174 5_3:-38015250 Msa0810060:CDS
ATTGCATGTTTCTTGAAGAA+AGG 0.436409 5_3:+38011442 None:intergenic
CGGAGAAGGGTCCTCGTCAC+CGG 0.441507 5_3:+38013102 None:intergenic
GGAATCTTGTTCTCCTGAGT+TGG 0.443168 5_3:-38015205 Msa0810060:CDS
AAGCAGCTGACAAAGAATAT+TGG 0.444728 5_3:-38011226 Msa0810060:three_prime_UTR
TATGACTTGGTGCATGCAGC+AGG 0.446091 5_3:-38012424 Msa0810060:CDS
GTCGAATGATTAATGTGCAT+TGG 0.448491 5_3:+38016346 None:intergenic
GTCGTGTTTACCATGGTTAT+AGG 0.449066 5_3:-38015305 Msa0810060:CDS
ACATTTCTGAACATGTTGTA+AGG 0.452439 5_3:+38013079 None:intergenic
GTTCCTCTTAGATGGCCTAC+TGG 0.452619 5_3:-38015075 Msa0810060:CDS
TAAGCGGCTGGGAAAATTCA+AGG 0.453444 5_3:+38012392 None:intergenic
GAGTCCTCACCAAGTTCATC+AGG 0.457244 5_3:+38013202 None:intergenic
CGCCGACAAAACCTCGGTCC+TGG 0.457781 5_3:+38012942 None:intergenic
CTTAGCAGCCCAGCTGAAAT+GGG 0.459246 5_3:-38011524 Msa0810060:CDS
AAAACCTCGGTCCTGGATCA+AGG 0.462140 5_3:+38012949 None:intergenic
AAAACATCATAAACTTAAAA+CGG 0.462756 5_3:+38015415 None:intergenic
TGCTGCATGCACCAAGTCAT+AGG 0.464175 5_3:+38012426 None:intergenic
AACCATCAAACAAAACTACT+AGG 0.468630 5_3:-38016223 Msa0810060:intron
CAGACACTGTCTGCTCGCTT+CGG 0.470208 5_3:+38016489 None:intergenic
ATACAAAGTGAGGATTGAAA+AGG 0.474509 5_3:-38011333 Msa0810060:three_prime_UTR
TTCAATTGAAAGCCAGCGGC+GGG 0.475046 5_3:+38013380 None:intergenic
TCTTGCTTCCCATTTCAGCT+GGG 0.475890 5_3:+38011516 None:intergenic
CTAGACATAGGTTGTGGCTA+TGG 0.482030 5_3:-38014106 Msa0810060:CDS
CCGATGGAAATGAGTTTGAA+AGG 0.483849 5_3:-38015155 Msa0810060:CDS
GACATGAATGCTAACTTTGG+TGG 0.484582 5_3:-38013052 Msa0810060:CDS
TTTCCAGAAAGAAAGGTTCT+CGG 0.484738 5_3:-38013479 Msa0810060:intron
AATTTGTCGTCTTCGTCAAG+AGG 0.486090 5_3:-38015327 Msa0810060:CDS
AAAGGAGACCTCAATGCTAA+AGG 0.488766 5_3:+38015507 None:intergenic
GTGAAAGAAGCAATCATAGC+AGG 0.489787 5_3:+38013980 None:intergenic
ACTTTACCGAAAATCTGTGC+TGG 0.491547 5_3:-38013654 Msa0810060:CDS
GCATCTGATCCAATCAGTGT+TGG 0.492382 5_3:-38015450 Msa0810060:CDS
AGATTTCTAGGGGTGCTTCA+AGG 0.496300 5_3:-38015239 Msa0810060:CDS
TCTCGGCCCCTGTGTGGTAG+AGG 0.498322 5_3:-38013462 Msa0810060:CDS
TAAATAATTCTATGATATAG+GGG 0.498850 5_3:+38011075 None:intergenic
TGCAGCCGTAAGGCGTGCAT+AGG 0.500466 5_3:-38011267 Msa0810060:three_prime_UTR
CTTGAAGTCTCCTATAACCA+TGG 0.505745 5_3:+38015295 None:intergenic
TGCAAGATGTGGCATTGATT+GGG 0.507894 5_3:-38013909 Msa0810060:CDS
CCTTGCTTTAATGTTTCCGA+TGG 0.509748 5_3:-38015171 Msa0810060:CDS
TGCACCAAGTCATAGGTTCT+CGG 0.510253 5_3:+38012433 None:intergenic
TCTGAAAACAACAACTTCAA+AGG 0.510267 5_3:+38015489 None:intergenic
GCACCAAGTCATAGGTTCTC+GGG 0.511240 5_3:+38012434 None:intergenic
AACATGTTGTAAGGCGGAGA+AGG 0.511703 5_3:+38013088 None:intergenic
ATCACACCCCTTTAGCATTG+AGG 0.514349 5_3:-38015515 Msa0810060:CDS
CTGGAGCTGGATTCTCAAAA+GGG 0.515101 5_3:-38015809 Msa0810060:five_prime_UTR
ATGACCCTATGCACGCCTTA+CGG 0.516248 5_3:+38011262 None:intergenic
ATTGCAAACTATGAGCCTTC+TGG 0.516898 5_3:-38014037 Msa0810060:CDS
TCTGATCATCCGAAGAGGCC+CGG 0.518115 5_3:-38013121 Msa0810060:CDS
ACCATCAAACAAAACTACTA+GGG 0.520017 5_3:-38016222 Msa0810060:intron
CCTTTCAAACTCATTTCCAT+CGG 0.521679 5_3:+38015155 None:intergenic
TGCACGCCTTACGGCTGCAC+AGG 0.523599 5_3:+38011271 None:intergenic
AACTATGTCGGTGATGTGTC+GGG 0.525218 5_3:+38016638 None:intergenic
GCTTCTCCTGTGCAGCCGTA+AGG 0.525312 5_3:-38011277 Msa0810060:three_prime_UTR
CAATTGCAGGATGATGATGT+TGG 0.529476 5_3:-38014777 Msa0810060:intron
AAAACATCAATGATGATACA+TGG 0.529523 5_3:-38015596 Msa0810060:CDS
TCAAAATTTGACTGTCAAAG+AGG 0.532274 5_3:+38014068 None:intergenic
GAGGAACACAGACCCGCCGC+TGG 0.534244 5_3:-38013392 Msa0810060:CDS
TTGGTGAGGACTCTGACAGC+TGG 0.536321 5_3:-38013192 Msa0810060:CDS
GAATCTTCCTTCATACAAGC+TGG 0.538007 5_3:-38014659 Msa0810060:CDS
TACAAAGTGAGGATTGAAAA+GGG 0.538274 5_3:-38011332 Msa0810060:three_prime_UTR
AAGAATGAGTTAGCCATACA+TGG 0.539849 5_3:-38013321 Msa0810060:intron
GGATTGCTGCCTGATGAACT+TGG 0.541826 5_3:-38013211 Msa0810060:CDS
GCAGCCGTAAGGCGTGCATA+GGG 0.545092 5_3:-38011266 Msa0810060:three_prime_UTR
CATCAAGACCTCTACCACAC+AGG 0.546815 5_3:+38013454 None:intergenic
CAGAAAATATTACAGGCGAC+AGG 0.549480 5_3:+38013140 None:intergenic
TAACTATCTTCCCTTGATCC+AGG 0.552006 5_3:-38012960 Msa0810060:CDS
TGTGTTGAAAGAGTATGTCT+AGG 0.552077 5_3:-38015656 Msa0810060:exon
GAACTATGTCGGTGATGTGT+CGG 0.552482 5_3:+38016637 None:intergenic
TTCTTTGTCAGCTGCTTGTG+TGG 0.553823 5_3:+38011232 None:intergenic
TTTCCAGTAGGCCATCTAAG+AGG 0.554429 5_3:+38015072 None:intergenic
TGTTTCCGGTACTCGTGTAC+CGG 0.556249 5_3:-38015619 Msa0810060:CDS
CTTTACCGAAAATCTGTGCT+GGG 0.556623 5_3:-38013653 Msa0810060:CDS
CATATGAGAGGCTGAACGAA+AGG 0.563007 5_3:+38014739 None:intergenic
TCCGAAGAGGCCCGGTGACG+AGG 0.564321 5_3:-38013113 Msa0810060:CDS
TTGTTCAAATTAGCCCGAGA+AGG 0.564574 5_3:+38013342 None:intergenic
TTAGACATGAATGCTAACTT+TGG 0.569291 5_3:-38013055 Msa0810060:CDS
GGAGAAGGGTCCTCGTCACC+GGG 0.572769 5_3:+38013103 None:intergenic
AAACCTCGGTCCTGGATCAA+GGG 0.573765 5_3:+38012950 None:intergenic
TCATAGGTTCTCGGGTATGT+CGG 0.578308 5_3:+38012442 None:intergenic
TTCAATGAACAGATCAAGCA+TGG 0.580708 5_3:+38012363 None:intergenic
CTTGCAAAGCAAAACACAAG+AGG 0.581432 5_3:+38016273 None:intergenic
TGCTACAAAGTAATAAGAGA+AGG 0.583403 5_3:+38016423 None:intergenic
CTTCTGGAAGCTTGACCAAG+AGG 0.586011 5_3:-38014999 Msa0810060:intron
GCCACAACCTATGTCTAGTA+CGG 0.587892 5_3:+38014111 None:intergenic
ACAAGGAGAATCAGAAAAGG+TGG 0.588315 5_3:-38013690 Msa0810060:CDS
CATGGTGCACCTAAGCGGCT+GGG 0.590131 5_3:+38012381 None:intergenic
ACTTACACCAGCTTGTATGA+AGG 0.590478 5_3:+38014652 None:intergenic
ACAGTGTCTGTGCTCACGAT+CGG 0.591269 5_3:-38016476 Msa0810060:five_prime_UTR
CCATCGGAAACATTAAAGCA+AGG 0.593228 5_3:+38015171 None:intergenic
ATTCGAACCGTACTAGACAT+AGG 0.593344 5_3:-38014118 Msa0810060:CDS
CCGGAAACACCTCGATGTAG+AGG 0.593760 5_3:+38015633 None:intergenic
AACATATCAAAAGACAGAGA+TGG 0.597981 5_3:+38013938 None:intergenic
GATATTGGTGAGATTTCTAG+GGG 0.598200 5_3:-38015249 Msa0810060:CDS
TGTGAAAATCACTGCACAAG+AGG 0.598848 5_3:-38015028 Msa0810060:CDS
AGGTTTAGGATAAGAGTGAA+CGG 0.600037 5_3:+38016680 None:intergenic
GAACTGCAAAACTGCATAGG+AGG 0.600256 5_3:-38013411 Msa0810060:CDS
GTAACAAGGAGAATCAGAAA+AGG 0.601806 5_3:-38013693 Msa0810060:CDS
TTGTTACGAGCATTTGTAAG+CGG 0.602642 5_3:+38013709 None:intergenic
ATCAAGACCTCTACCACACA+GGG 0.602650 5_3:+38013455 None:intergenic
GTCAAGAACATGAACTATGT+CGG 0.605607 5_3:+38016626 None:intergenic
GGCATTGATTGGGACCAGAA+AGG 0.607628 5_3:-38013899 Msa0810060:intron
AAATAATTCTATGATATAGG+GGG 0.607799 5_3:+38011076 None:intergenic
TTTCAATTGAAAGCCAGCGG+CGG 0.609031 5_3:+38013379 None:intergenic
GCTTACAAATGCTCGTAACA+AGG 0.610328 5_3:-38013707 Msa0810060:CDS
AAACATCAATGATGATACAT+GGG 0.612157 5_3:-38015595 Msa0810060:CDS
GGTTCTCGGGTATGTCGGAA+AGG 0.613488 5_3:+38012447 None:intergenic
TCAAGAGGTCGTGTTTACCA+TGG 0.613690 5_3:-38015312 Msa0810060:CDS
TTACGGCTGCACAGGAGAAG+CGG 0.614675 5_3:+38011279 None:intergenic
CGCGAACTGCAAAACTGCAT+AGG 0.617218 5_3:-38013414 Msa0810060:CDS
ACATGTTGTAAGGCGGAGAA+GGG 0.618483 5_3:+38013089 None:intergenic
TTGTGTGGCCTCTAGGTGCG+AGG 0.619318 5_3:-38012470 Msa0810060:intron
TAAGTTGTTGCTCATTGTTG+TGG 0.621756 5_3:-38011125 Msa0810060:three_prime_UTR
AAGTTCTGCCATACAAAGTG+AGG 0.624339 5_3:-38011343 Msa0810060:three_prime_UTR
GGAACTTTGTAATTAACTGG+TGG 0.627180 5_3:+38015093 None:intergenic
AGGAGACCTCAATGCTAAAG+GGG 0.629846 5_3:+38015509 None:intergenic
AAGCGGCTGGGAAAATTCAA+GGG 0.630391 5_3:+38012393 None:intergenic
AACTCCATCAAACATATGAG+AGG 0.634768 5_3:+38014727 None:intergenic
ATACCCGAGAACCTATGACT+TGG 0.638261 5_3:-38012437 Msa0810060:CDS
TTTCTAGGGGTGCTTCAAGG+TGG 0.639200 5_3:-38015236 Msa0810060:CDS
CTTCCCTTGATCCAGGACCG+AGG 0.642864 5_3:-38012953 Msa0810060:CDS
GTCCAAACAAAGTATCCACC+CGG 0.644568 5_3:+38013736 None:intergenic
GCTGCCTGATGAACTTGGTG+AGG 0.645687 5_3:-38013206 Msa0810060:CDS
CCATCAAACAAAACTACTAG+GGG 0.646601 5_3:-38016221 Msa0810060:intron
CGGCTGCACAGGAGAAGCGG+TGG 0.647779 5_3:+38011282 None:intergenic
ACCGTACTAGACATAGGTTG+TGG 0.648823 5_3:-38014112 Msa0810060:CDS
AAAGGTTCTCGGCCCCTGTG+TGG 0.650412 5_3:-38013468 Msa0810060:CDS
AGCTGAACTTGACTACCAGA+AGG 0.652030 5_3:+38014022 None:intergenic
ATGACTTGGTGCATGCAGCA+GGG 0.652344 5_3:-38012423 Msa0810060:CDS
AAAAGAATTGTTATACATCG+AGG 0.656708 5_3:-38013582 Msa0810060:intron
GTGTGGTAGAGGTCTTGATG+TGG 0.657374 5_3:-38013451 Msa0810060:CDS
GCAAAACGCCGACAAAACCT+CGG 0.659812 5_3:+38012936 None:intergenic
TCAAGCATGGTGCACCTAAG+CGG 0.667307 5_3:+38012376 None:intergenic
GTTCAGCTTACTCTTGAGCG+AGG 0.669560 5_3:-38014007 Msa0810060:CDS
ATGTTACATTGTGCAAGATG+TGG 0.674130 5_3:-38013920 Msa0810060:CDS
TGACAGGTTACTTCGCCCAG+AGG 0.677454 5_3:-38012338 Msa0810060:intron
TTTCTGAACATGTTGTAAGG+CGG 0.677618 5_3:+38013082 None:intergenic
ACGAGCATTTGTAAGCGGTG+AGG 0.680282 5_3:+38013714 None:intergenic
GCAAGCTAGAAAGTCTGTGT+GGG 0.695074 5_3:-38013011 Msa0810060:CDS
TGCAAGCTAGAAAGTCTGTG+TGG 0.704131 5_3:-38013012 Msa0810060:CDS
CGAAATCGAAAGTAACAGCG+AGG 0.717535 5_3:-38011488 Msa0810060:CDS
GTCTGTGTGGGTAATGAACG+TGG 0.718175 5_3:-38012999 Msa0810060:CDS
ATGTCTAGGCCTCTACATCG+AGG 0.729495 5_3:-38015642 Msa0810060:CDS
GTGGTGTATAAAATGCTCAG+TGG 0.788427 5_3:-38011106 Msa0810060:three_prime_UTR
TCAAGACCTCTACCACACAG+GGG 0.811954 5_3:+38013456 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATAAAATTGAAAATATAT+GGG + chr5_3:38011703-38011722 None:intergenic 10.0%
!!! ATTTTTTTTTCTTTTCATTT+TGG - chr5_3:38011907-38011926 Msa0810060:intron 10.0%
!! AAATGAATATATGTATATTA+TGG + chr5_3:38016379-38016398 None:intergenic 10.0%
!! TAAACACAATTATTTATTAT+TGG - chr5_3:38016599-38016618 Msa0810060:five_prime_UTR 10.0%
!! AAACACAATTATTTATTATT+GGG - chr5_3:38016600-38016619 Msa0810060:five_prime_UTR 10.0%
!!! TTTAAAAAACTTTTAGTACT+AGG - chr5_3:38011228-38011247 Msa0810060:three_prime_UTR 15.0%
!! CCAATAAAATTGAAAATATA+TGG + chr5_3:38011704-38011723 None:intergenic 15.0%
!!! CCATATATTTTCAATTTTAT+TGG - chr5_3:38011701-38011720 Msa0810060:intron 15.0%
!!! TTTTCAATTTTATTGGTTTT+TGG - chr5_3:38011708-38011727 Msa0810060:intron 15.0%
!! AAAACATCATAAACTTAAAA+CGG + chr5_3:38012351-38012370 None:intergenic 15.0%
!!! TTTTAAGTTTATGATGTTTT+TGG - chr5_3:38012351-38012370 Msa0810060:CDS 15.0%
!!! AAATTTTTCTTATTGCTATT+AGG - chr5_3:38014531-38014550 Msa0810060:intron 15.0%
!! TTAATAATTCCATTAATTTC+AGG + chr5_3:38015564-38015583 None:intergenic 15.0%
!!! GATAGTGAATTTTTTATTTT+AGG + chr5_3:38015593-38015612 None:intergenic 15.0%
!!! CATGATATTTTATAAAAGTT+TGG + chr5_3:38015824-38015843 None:intergenic 15.0%
!! TTTATGATAATTATGGAAAT+TGG + chr5_3:38016402-38016421 None:intergenic 15.0%
!!! AATTGTTTAGTTTGATCTAA+TGG + chr5_3:38011186-38011205 None:intergenic 20.0%
!! AAAATCACTATTCAATTCAA+TGG + chr5_3:38011624-38011643 None:intergenic 20.0%
!! AAAATTGAAAATATATGGGT+TGG + chr5_3:38011699-38011718 None:intergenic 20.0%
!! ATATATATCCATTTCATTAC+TGG - chr5_3:38011746-38011765 Msa0810060:intron 20.0%
!! TATATATCCATTTCATTACT+GGG - chr5_3:38011747-38011766 Msa0810060:intron 20.0%
!!! AAAACTTTTTCTTCTGAAAA+GGG + chr5_3:38011844-38011863 None:intergenic 20.0%
!!! ATCTTTTTCTGATTTATCTT+TGG + chr5_3:38012203-38012222 None:intergenic 20.0%
!!! AAAAAGATGATTTTGATAGA+AGG - chr5_3:38012215-38012234 Msa0810060:intron 20.0%
!!! AAAAGATGATTTTGATAGAA+GGG - chr5_3:38012216-38012235 Msa0810060:intron 20.0%
!! AAAAAAAGTTATAACTTCAC+TGG + chr5_3:38012956-38012975 None:intergenic 20.0%
!! TATGTGATCTTTATTGAAAT+TGG - chr5_3:38013139-38013158 Msa0810060:CDS 20.0%
!!! TGCGTTAATTTTTTTTTTTC+CGG - chr5_3:38013178-38013197 Msa0810060:CDS 20.0%
!!! GGATCTAAATTTTTTTTATC+TGG - chr5_3:38013899-38013918 Msa0810060:intron 20.0%
!!! TTCCACAATCTTTTAAATAT+TGG - chr5_3:38014921-38014940 Msa0810060:intron 20.0%
!! TAATGTCAATTTCTTGATTA+TGG - chr5_3:38015003-38015022 Msa0810060:CDS 20.0%
!!! CTATTATAATCATTTTTGTG+TGG - chr5_3:38015278-38015297 Msa0810060:CDS 20.0%
!! TATTAAATTTACATACCTCT+GGG + chr5_3:38015443-38015462 None:intergenic 20.0%
!! TTATTAAATTTACATACCTC+TGG + chr5_3:38015444-38015463 None:intergenic 20.0%
!! CAATTTGTATTTCAAATTGT+AGG - chr5_3:38015521-38015540 Msa0810060:CDS 20.0%
!! AATTTGATACCTGAAATTAA+TGG - chr5_3:38015552-38015571 Msa0810060:CDS 20.0%
!!! CTTCTGAAGTTTTTTATTTT+AGG - chr5_3:38015703-38015722 Msa0810060:five_prime_UTR 20.0%
!!! ACTAACATGAAATTTTATAG+GGG + chr5_3:38015746-38015765 None:intergenic 20.0%
!!! GACTAACATGAAATTTTATA+GGG + chr5_3:38015747-38015766 None:intergenic 20.0%
!!! AGACTAACATGAAATTTTAT+AGG + chr5_3:38015748-38015767 None:intergenic 20.0%
!! TAAAAGTTTGGTAAAAGTAA+GGG + chr5_3:38015812-38015831 None:intergenic 20.0%
!! ATAAAAGTTTGGTAAAAGTA+AGG + chr5_3:38015813-38015832 None:intergenic 20.0%
!! ACATTAGATATCTAATTTCA+GGG + chr5_3:38015959-38015978 None:intergenic 20.0%
!! TTAGATATCTAATGTCTATT+TGG - chr5_3:38015964-38015983 Msa0810060:intron 20.0%
!!! TTTACTCTTGATTTTTCATT+TGG - chr5_3:38016128-38016147 Msa0810060:intron 20.0%
!! TATTATGGTATAGTTTCTTT+AGG + chr5_3:38016364-38016383 None:intergenic 20.0%
!! AAATAATTCTATGATATAGG+GGG + chr5_3:38016690-38016709 None:intergenic 20.0%
! AATGAGAGAGAAAAAAATGA+GGG + chr5_3:38011396-38011415 None:intergenic 25.0%
! AAATGAGAGAGAAAAAAATG+AGG + chr5_3:38011397-38011416 None:intergenic 25.0%
!!! CAAAACTTTTTCTTCTGAAA+AGG + chr5_3:38011845-38011864 None:intergenic 25.0%
! AAAACATCAATGATGATACA+TGG - chr5_3:38012167-38012186 Msa0810060:intron 25.0%
! AAACATCAATGATGATACAT+GGG - chr5_3:38012168-38012187 Msa0810060:intron 25.0%
!!! AAAGATGATTTTGATAGAAG+GGG - chr5_3:38012217-38012236 Msa0810060:intron 25.0%
!! TTGTTTTCAGATAAAGAGAA+TGG - chr5_3:38012286-38012305 Msa0810060:intron 25.0%
!! TACTGGAAAAGATGTTATTT+GGG - chr5_3:38012705-38012724 Msa0810060:intron 25.0%
!!! TTTTTTTTCCTTTCAATTGC+AGG - chr5_3:38012973-38012992 Msa0810060:CDS 25.0%
!!! GTTAATTTTTTTTTTTCCGG+TGG - chr5_3:38013181-38013200 Msa0810060:CDS 25.0%
! TACGTGAAGTATAAATACAA+CGG + chr5_3:38013214-38013233 None:intergenic 25.0%
! GTATTTATACTTCACGTATT+TGG - chr5_3:38013216-38013235 Msa0810060:intron 25.0%
!!! TTTTGACTTCTGATAGATTT+TGG - chr5_3:38013528-38013547 Msa0810060:intron 25.0%
!! ATCAAACAACATTTAAGGTA+AGG + chr5_3:38013595-38013614 None:intergenic 25.0%
! TGTCAATCAAACAACATTTA+AGG + chr5_3:38013600-38013619 None:intergenic 25.0%
! GATTTAACACAGCAAAATTA+TGG + chr5_3:38013933-38013952 None:intergenic 25.0%
! AAAAGAATTGTTATACATCG+AGG - chr5_3:38014181-38014200 Msa0810060:intron 25.0%
! ACAGGTAATACTAAGAATTA+GGG + chr5_3:38014259-38014278 None:intergenic 25.0%
! AACAGGTAATACTAAGAATT+AGG + chr5_3:38014260-38014279 None:intergenic 25.0%
!! TTCTTTCTGGAAATAAAAAC+AGG + chr5_3:38014277-38014296 None:intergenic 25.0%
!!! GTTTTTATTTCCAGAAAGAA+AGG - chr5_3:38014277-38014296 Msa0810060:intron 25.0%
! CAATTGAAAAAAGGGAAAAA+TGG - chr5_3:38014398-38014417 Msa0810060:intron 25.0%
! TACATAACAATTACCATGTA+TGG + chr5_3:38014458-38014477 None:intergenic 25.0%
! GACCAATATTTAAAAGATTG+TGG + chr5_3:38014926-38014945 None:intergenic 25.0%
! CTCAAAAAACTAAGCTATAA+AGG + chr5_3:38014974-38014993 None:intergenic 25.0%
!!! CTTTATAGCTTAGTTTTTTG+AGG - chr5_3:38014972-38014991 Msa0810060:intron 25.0%
!!! CAGAATATTAGTTTTACACA+TGG + chr5_3:38015046-38015065 None:intergenic 25.0%
! GCTTGCAAAATATTTAAACT+TGG - chr5_3:38015167-38015186 Msa0810060:CDS 25.0%
!!! TTTATTTTTCCACATACCTT+TGG - chr5_3:38015201-38015220 Msa0810060:CDS 25.0%
!!! TATTTCACTCTAAAACCAAA+TGG + chr5_3:38015500-38015519 None:intergenic 25.0%
!!! ACTATCACATCAGATTTTTT+GGG - chr5_3:38015607-38015626 Msa0810060:CDS 25.0%
! GACATTAGATATCTAATTTC+AGG + chr5_3:38015960-38015979 None:intergenic 25.0%
!!! AAATTTGTTAAGTGTAAGGA+AGG + chr5_3:38015991-38016010 None:intergenic 25.0%
!!! TCGAAAATTTGTTAAGTGTA+AGG + chr5_3:38015995-38016014 None:intergenic 25.0%
! AGTTTGTCAAATAAATCTCA+TGG + chr5_3:38016018-38016037 None:intergenic 25.0%
! GCAGAACTTTATGATAATTA+TGG + chr5_3:38016409-38016428 None:intergenic 25.0%
!! GATAAAGATTTTAGGTGCTT+AGG + chr5_3:38011106-38011125 None:intergenic 30.0%
TGCTACAAAGTAATAAGAGA+AGG + chr5_3:38011343-38011362 None:intergenic 30.0%
AACCATCAAACAAAACTACT+AGG - chr5_3:38011540-38011559 Msa0810060:CDS 30.0%
ACCATCAAACAAAACTACTA+GGG - chr5_3:38011541-38011560 Msa0810060:CDS 30.0%
AGTAAACAACACTCTTGTAT+TGG - chr5_3:38012007-38012026 Msa0810060:intron 30.0%
! GTATCATCATTGATGTTTTC+CGG + chr5_3:38012166-38012185 None:intergenic 30.0%
TCTGAAAACAACAACTTCAA+AGG + chr5_3:38012277-38012296 None:intergenic 30.0%
ATAAACTTAAAACGGCTTCT+TGG + chr5_3:38012343-38012362 None:intergenic 30.0%
!!! ATAGTTGTTTTTGCTCTTGT+TGG - chr5_3:38012394-38012413 Msa0810060:CDS 30.0%
! GAAACTTGTTTCAGATTTGT+TGG - chr5_3:38012492-38012511 Msa0810060:intron 30.0%
!! GTTTCAGATTTGTTGGATAT+TGG - chr5_3:38012499-38012518 Msa0810060:intron 30.0%
AGAGGAACTTTGTAATTAAC+TGG + chr5_3:38012676-38012695 None:intergenic 30.0%
ATTACAAAGTTCCTCTTAGA+TGG - chr5_3:38012680-38012699 Msa0810060:intron 30.0%
! CAAATAACATCTTTTCCAGT+AGG + chr5_3:38012706-38012725 None:intergenic 30.0%
CTACTGGAAAAGATGTTATT+TGG - chr5_3:38012704-38012723 Msa0810060:intron 30.0%
CACATATTCCAGTAATATAC+AGG + chr5_3:38012847-38012866 None:intergenic 30.0%
CTGTATATTACTGGAATATG+TGG - chr5_3:38012845-38012864 Msa0810060:intron 30.0%
!!! TTTTAGCTTGTACTTTGTTC+AGG - chr5_3:38013468-38013487 Msa0810060:CDS 30.0%
TCAAAATTTGACTGTCAAAG+AGG + chr5_3:38013698-38013717 None:intergenic 30.0%
AACATATCAAAAGACAGAGA+TGG + chr5_3:38013828-38013847 None:intergenic 30.0%
TAATTGACAACCACATTATG+TGG - chr5_3:38013961-38013980 Msa0810060:CDS 30.0%
ATAAGTACATCATGTAAAGC+AGG + chr5_3:38014211-38014230 None:intergenic 30.0%
!!! TTTTTTCAATTGAAAGCCAG+CGG + chr5_3:38014390-38014409 None:intergenic 30.0%
! CTGGCTTTCAATTGAAAAAA+GGG - chr5_3:38014390-38014409 Msa0810060:intron 30.0%
GGATGATCAGAAAATATTAC+AGG + chr5_3:38014633-38014652 None:intergenic 30.0%
ACATTTCTGAACATGTTGTA+AGG + chr5_3:38014687-38014706 None:intergenic 30.0%
TTAGACATGAATGCTAACTT+TGG - chr5_3:38014708-38014727 Msa0810060:CDS 30.0%
AGTAAATTTAGTACATGCCA+GGG + chr5_3:38014897-38014916 None:intergenic 30.0%
AAGTAAATTTAGTACATGCC+AGG + chr5_3:38014898-38014917 None:intergenic 30.0%
ATCTGTTCATTGAAATTGAC+AGG - chr5_3:38015409-38015428 Msa0810060:CDS 30.0%
!!! CACTATCACATCAGATTTTT+TGG - chr5_3:38015606-38015625 Msa0810060:CDS 30.0%
! TCTAGATCAAATTAGTCTCT+TGG + chr5_3:38015661-38015680 None:intergenic 30.0%
! TCATGTTAGTCTCTTAGAAT+TGG - chr5_3:38015756-38015775 Msa0810060:five_prime_UTR 30.0%
!!! TGAACTTTTTTGCTAAGTGA+GGG + chr5_3:38015852-38015871 None:intergenic 30.0%
!!! ATGAACTTTTTTGCTAAGTG+AGG + chr5_3:38015853-38015872 None:intergenic 30.0%
CTTTCTGATAACATAACAGA+GGG + chr5_3:38015885-38015904 None:intergenic 30.0%
ACTTTCTGATAACATAACAG+AGG + chr5_3:38015886-38015905 None:intergenic 30.0%
! ACAAACTTTCTGAAAAGTGA+GGG - chr5_3:38016031-38016050 Msa0810060:intron 30.0%
! CTCTTGATTTTTCATTTGGA+AGG - chr5_3:38016132-38016151 Msa0810060:intron 30.0%
! ACTCTAGCTGATTCTATTAA+AGG + chr5_3:38016219-38016238 None:intergenic 30.0%
ATTGCATGTTTCTTGAAGAA+AGG + chr5_3:38016324-38016343 None:intergenic 30.0%
! TTTTCAATCCTCACTTTGTA+TGG + chr5_3:38016431-38016450 None:intergenic 30.0%
ATACAAAGTGAGGATTGAAA+AGG - chr5_3:38016430-38016449 Msa0810060:five_prime_UTR 30.0%
TACAAAGTGAGGATTGAAAA+GGG - chr5_3:38016431-38016450 Msa0810060:five_prime_UTR 30.0%
GGAAGAAGAAAAAACAATAG+AGG - chr5_3:38016452-38016471 Msa0810060:five_prime_UTR 30.0%
! AGGTTTAGGATAAGAGTGAA+CGG + chr5_3:38011086-38011105 None:intergenic 35.0%
!! GATTTTAGGTGCTTAGGTTT+AGG + chr5_3:38011100-38011119 None:intergenic 35.0%
! TGTGTCGGGATAAAGATTTT+AGG + chr5_3:38011114-38011133 None:intergenic 35.0%
GTCAAGAACATGAACTATGT+CGG + chr5_3:38011140-38011159 None:intergenic 35.0%
GTCGAATGATTAATGTGCAT+TGG + chr5_3:38011420-38011439 None:intergenic 35.0%
AGCAAAACACAAGAGGTTAA+TGG + chr5_3:38011486-38011505 None:intergenic 35.0%
CCATCAAACAAAACTACTAG+GGG - chr5_3:38011542-38011561 Msa0810060:CDS 35.0%
TCCGTGATTTATATCAGATG+CGG - chr5_3:38011770-38011789 Msa0810060:intron 35.0%
ACCGCATCTGATATAAATCA+CGG + chr5_3:38011774-38011793 None:intergenic 35.0%
GAAAAGGGAATCAAAAACAG+AGG + chr5_3:38011829-38011848 None:intergenic 35.0%
TAGACTTGTGATTCTTCAAC+TGG - chr5_3:38011935-38011954 Msa0810060:intron 35.0%
! TGTGTTGAAAGAGTATGTCT+AGG - chr5_3:38012107-38012126 Msa0810060:intron 35.0%
!!! CTCTTGTTGGATCTTTTTTG+TGG - chr5_3:38012407-38012426 Msa0810060:CDS 35.0%
TGGATATTGGTGAGATTTCT+AGG - chr5_3:38012512-38012531 Msa0810060:intron 35.0%
GGATATTGGTGAGATTTCTA+GGG - chr5_3:38012513-38012532 Msa0810060:intron 35.0%
! GATATTGGTGAGATTTCTAG+GGG - chr5_3:38012514-38012533 Msa0810060:intron 35.0%
! GGAACAAAATTTTCCAACTC+AGG + chr5_3:38012574-38012593 None:intergenic 35.0%
CCTTTCAAACTCATTTCCAT+CGG + chr5_3:38012611-38012630 None:intergenic 35.0%
TGAGCAGAGTCAAAATTGTT+TGG - chr5_3:38012642-38012661 Msa0810060:intron 35.0%
GGAACTTTGTAATTAACTGG+TGG + chr5_3:38012673-38012692 None:intergenic 35.0%
GTAACTTCATAACTGCGTTA+CGG - chr5_3:38012815-38012834 Msa0810060:intron 35.0%
TAACTTCATAACTGCGTTAC+GGG - chr5_3:38012816-38012835 Msa0810060:intron 35.0%
ATCATCATCCTGCAATTGAA+AGG + chr5_3:38012984-38013003 None:intergenic 35.0%
AACTCCATCAAACATATGAG+AGG + chr5_3:38013039-38013058 None:intergenic 35.0%
CATCAGATTGCTGAAATGAT+TGG - chr5_3:38013071-38013090 Msa0810060:CDS 35.0%
ATGTTGGGTTCAACGTATAT+AGG - chr5_3:38013249-38013268 Msa0810060:intron 35.0%
TGTTGGGTTCAACGTATATA+GGG - chr5_3:38013250-38013269 Msa0810060:intron 35.0%
TCAAAAGACAGAGATGGATA+TGG + chr5_3:38013822-38013841 None:intergenic 35.0%
ATGTTACATTGTGCAAGATG+TGG - chr5_3:38013843-38013862 Msa0810060:intron 35.0%
CCTAAACTCAAATACCTTTC+TGG + chr5_3:38013881-38013900 None:intergenic 35.0%
!! CCAGAAAGGTATTTGAGTTT+AGG - chr5_3:38013878-38013897 Msa0810060:intron 35.0%
ACCACATTATGTGGAATAGA+TGG - chr5_3:38013970-38013989 Msa0810060:CDS 35.0%
!!! AGCTGATAGACTTTTAAGAC+CGG - chr5_3:38014008-38014027 Msa0810060:CDS 35.0%
TTGTTACGAGCATTTGTAAG+CGG + chr5_3:38014057-38014076 None:intergenic 35.0%
GTAACAAGGAGAATCAGAAA+AGG - chr5_3:38014070-38014089 Msa0810060:CDS 35.0%
TTTCCAGAAAGAAAGGTTCT+CGG - chr5_3:38014284-38014303 Msa0810060:intron 35.0%
! TTTTGCAGTTCGCGATAATA+TGG + chr5_3:38014343-38014362 None:intergenic 35.0%
!! GCTGGCTTTCAATTGAAAAA+AGG - chr5_3:38014389-38014408 Msa0810060:intron 35.0%
AAGAATGAGTTAGCCATACA+TGG - chr5_3:38014442-38014461 Msa0810060:intron 35.0%
AAGCAGCAGTGCAAAATTAT+TGG - chr5_3:38014595-38014614 Msa0810060:intron 35.0%
! TATTTTCTGATCATCCGAAG+AGG - chr5_3:38014637-38014656 Msa0810060:intron 35.0%
TTTCTGAACATGTTGTAAGG+CGG + chr5_3:38014684-38014703 None:intergenic 35.0%
TTCAATGAACAGATCAAGCA+TGG + chr5_3:38015403-38015422 None:intergenic 35.0%
CTAAAACCAAATGGAAGGAA+AGG + chr5_3:38015491-38015510 None:intergenic 35.0%
!! TCACTCTAAAACCAAATGGA+AGG + chr5_3:38015496-38015515 None:intergenic 35.0%
! AGTCTCTTGGACACAATTTT+AGG + chr5_3:38015648-38015667 None:intergenic 35.0%
! TGTTAGTCTCTTAGAATTGG+TGG - chr5_3:38015759-38015778 Msa0810060:five_prime_UTR 35.0%
TAAAAGTAAGGGACCAAGTT+GGG + chr5_3:38015801-38015820 None:intergenic 35.0%
!!! GAACTTTTTTGCTAAGTGAG+GGG + chr5_3:38015851-38015870 None:intergenic 35.0%
GAAAGTTTGTCATGTCAGAT+TGG - chr5_3:38015900-38015919 Msa0810060:intron 35.0%
! GACAAACTTTCTGAAAAGTG+AGG - chr5_3:38016030-38016049 Msa0810060:intron 35.0%
GTTTCTTGAAGAAAGGTTTC+TGG + chr5_3:38016317-38016336 None:intergenic 35.0%
AAGCAGCTGACAAAGAATAT+TGG - chr5_3:38016537-38016556 Msa0810060:five_prime_UTR 35.0%
TAAGTTGTTGCTCATTGTTG+TGG - chr5_3:38016638-38016657 Msa0810060:five_prime_UTR 35.0%
CTTGCAAAGCAAAACACAAG+AGG + chr5_3:38011493-38011512 None:intergenic 40.0%
!!! CCCCTAGTAGTTTTGTTTGA+TGG + chr5_3:38011545-38011564 None:intergenic 40.0%
AAGGAGACCTCAATGCTAAA+GGG + chr5_3:38012258-38012277 None:intergenic 40.0%
AAAGGAGACCTCAATGCTAA+AGG + chr5_3:38012259-38012278 None:intergenic 40.0%
AATTTGTCGTCTTCGTCAAG+AGG - chr5_3:38012436-38012455 Msa0810060:CDS 40.0%
GTCGTGTTTACCATGGTTAT+AGG - chr5_3:38012458-38012477 Msa0810060:CDS 40.0%
CTTGAAGTCTCCTATAACCA+TGG + chr5_3:38012471-38012490 None:intergenic 40.0%
TGCTTCAAGGTGGAAAGAAT+TGG - chr5_3:38012537-38012556 Msa0810060:intron 40.0%
CCATCGGAAACATTAAAGCA+AGG + chr5_3:38012595-38012614 None:intergenic 40.0%
CCTTGCTTTAATGTTTCCGA+TGG - chr5_3:38012592-38012611 Msa0810060:intron 40.0%
CCGATGGAAATGAGTTTGAA+AGG - chr5_3:38012608-38012627 Msa0810060:intron 40.0%
TGTGAAAATCACTGCACAAG+AGG - chr5_3:38012735-38012754 Msa0810060:intron 40.0%
GACACATGTTAGTTACCTCT+TGG + chr5_3:38012782-38012801 None:intergenic 40.0%
AACTTCATAACTGCGTTACG+GGG - chr5_3:38012817-38012836 Msa0810060:intron 40.0%
AATATCCGCAACCGTAATTG+CGG + chr5_3:38012913-38012932 None:intergenic 40.0%
! CAATTGCAGGATGATGATGT+TGG - chr5_3:38012986-38013005 Msa0810060:CDS 40.0%
TCAGCCTCTCATATGTTTGA+TGG - chr5_3:38013032-38013051 Msa0810060:CDS 40.0%
GAATCTTCCTTCATACAAGC+TGG - chr5_3:38013104-38013123 Msa0810060:CDS 40.0%
ACTTACACCAGCTTGTATGA+AGG + chr5_3:38013114-38013133 None:intergenic 40.0%
ATACAACGGATAAAGACCAC+CGG + chr5_3:38013200-38013219 None:intergenic 40.0%
TTCACGTATTTGGTACACAC+TGG - chr5_3:38013226-38013245 Msa0810060:intron 40.0%
ATTTGGTACACACTGGATGT+TGG - chr5_3:38013233-38013252 Msa0810060:intron 40.0%
TTTGGTACACACTGGATGTT+GGG - chr5_3:38013234-38013253 Msa0810060:intron 40.0%
GTTGGGTTCAACGTATATAG+GGG - chr5_3:38013251-38013270 Msa0810060:intron 40.0%
TTGGGTTCAACGTATATAGG+GGG - chr5_3:38013252-38013271 Msa0810060:intron 40.0%
TAGTAGTCGCAGTTACAGTT+TGG - chr5_3:38013295-38013314 Msa0810060:intron 40.0%
CATCAAAAACCGTCATGTCT+TGG - chr5_3:38013378-38013397 Msa0810060:CDS 40.0%
CAATATGGACCAAGACATGA+CGG + chr5_3:38013390-38013409 None:intergenic 40.0%
TCATGTCTTGGTCCATATTG+TGG - chr5_3:38013390-38013409 Msa0810060:CDS 40.0%
AGTGTTTGCCAACCACAATA+TGG + chr5_3:38013405-38013424 None:intergenic 40.0%
GGTTCGAATCTGGAAATTTC+AGG + chr5_3:38013634-38013653 None:intergenic 40.0%
ATTCGAACCGTACTAGACAT+AGG - chr5_3:38013645-38013664 Msa0810060:CDS 40.0%
ATTGCAAACTATGAGCCTTC+TGG - chr5_3:38013726-38013745 Msa0810060:CDS 40.0%
GTGAAAGAAGCAATCATAGC+AGG + chr5_3:38013786-38013805 None:intergenic 40.0%
!! TGCAAGATGTGGCATTGATT+GGG - chr5_3:38013854-38013873 Msa0810060:intron 40.0%
GCCATCTATTCCACATAATG+TGG + chr5_3:38013974-38013993 None:intergenic 40.0%
!!! GCTGATAGACTTTTAAGACC+GGG - chr5_3:38014009-38014028 Msa0810060:CDS 40.0%
GCTTACAAATGCTCGTAACA+AGG - chr5_3:38014056-38014075 Msa0810060:CDS 40.0%
ACAAGGAGAATCAGAAAAGG+TGG - chr5_3:38014073-38014092 Msa0810060:CDS 40.0%
ACTTTACCGAAAATCTGTGC+TGG - chr5_3:38014109-38014128 Msa0810060:CDS 40.0%
CTTTACCGAAAATCTGTGCT+GGG - chr5_3:38014110-38014129 Msa0810060:CDS 40.0%
AAAGGGAAAAATGGCCTTCT+CGG - chr5_3:38014407-38014426 Msa0810060:intron 40.0%
TTGTTCAAATTAGCCCGAGA+AGG + chr5_3:38014424-38014443 None:intergenic 40.0%
CAGAAAATATTACAGGCGAC+AGG + chr5_3:38014626-38014645 None:intergenic 40.0%
GACATGAATGCTAACTTTGG+TGG - chr5_3:38014711-38014730 Msa0810060:CDS 40.0%
GATAGTTAGGTCCAGTTCTT+GGG + chr5_3:38014791-38014810 None:intergenic 40.0%
AGATAGTTAGGTCCAGTTCT+TGG + chr5_3:38014792-38014811 None:intergenic 40.0%
TGGATCAAGGGAAGATAGTT+AGG + chr5_3:38014804-38014823 None:intergenic 40.0%
TAACTATCTTCCCTTGATCC+AGG - chr5_3:38014803-38014822 Msa0810060:intron 40.0%
TCCTTCCTCTTGTCCTTATA+TGG - chr5_3:38014868-38014887 Msa0810060:intron 40.0%
TCCATATAAGGACAAGAGGA+AGG + chr5_3:38014872-38014891 None:intergenic 40.0%
GGAATCCATATAAGGACAAG+AGG + chr5_3:38014876-38014895 None:intergenic 40.0%
TTGTCCTTATATGGATTCCC+TGG - chr5_3:38014877-38014896 Msa0810060:intron 40.0%
CCATGACTCTGTATGAAGTA+GGG + chr5_3:38014948-38014967 None:intergenic 40.0%
ACCATGACTCTGTATGAAGT+AGG + chr5_3:38014949-38014968 None:intergenic 40.0%
!! ATCATTTTTGTGTGGCCTCT+AGG - chr5_3:38015286-38015305 Msa0810060:CDS 40.0%
TCCATTCCTTTCCTTCCATT+TGG - chr5_3:38015482-38015501 Msa0810060:CDS 40.0%
ACCAAATGGAAGGAAAGGAA+TGG + chr5_3:38015486-38015505 None:intergenic 40.0%
ACTCTATGAATTGCCCAACT+TGG - chr5_3:38015785-38015804 Msa0810060:five_prime_UTR 40.0%
GTAAAAGTAAGGGACCAAGT+TGG + chr5_3:38015802-38015821 None:intergenic 40.0%
!! TTACTCAGGGAGTATCAAGT+TGG - chr5_3:38015932-38015951 Msa0810060:intron 40.0%
TTTGCCAGCATGTGTCAATT+TGG + chr5_3:38016088-38016107 None:intergenic 40.0%
! TGTTGTTTGTCATGTGTGCA+GGG - chr5_3:38016168-38016187 Msa0810060:intron 40.0%
!! AGAAAGGTTTCTGGCATATC+AGG + chr5_3:38016308-38016327 None:intergenic 40.0%
AAGTTCTGCCATACAAAGTG+AGG - chr5_3:38016420-38016439 Msa0810060:five_prime_UTR 40.0%
GTGGTGTATAAAATGCTCAG+TGG - chr5_3:38016657-38016676 Msa0810060:five_prime_UTR 40.0%
AACTATGTCGGTGATGTGTC+GGG + chr5_3:38011128-38011147 None:intergenic 45.0%
GAACTATGTCGGTGATGTGT+CGG + chr5_3:38011129-38011148 None:intergenic 45.0%
TCACGGACCCAGTAATGAAA+TGG + chr5_3:38011757-38011776 None:intergenic 45.0%
TGTGATTCTTCAACTGGAGC+TGG - chr5_3:38011941-38011960 Msa0810060:intron 45.0%
ACTGGAGCTGGATTCTCAAA+AGG - chr5_3:38011953-38011972 Msa0810060:intron 45.0%
CTGGAGCTGGATTCTCAAAA+GGG - chr5_3:38011954-38011973 Msa0810060:intron 45.0%
ATCACACCCCTTTAGCATTG+AGG - chr5_3:38012248-38012267 Msa0810060:intron 45.0%
AGGAGACCTCAATGCTAAAG+GGG + chr5_3:38012257-38012276 None:intergenic 45.0%
GCATCTGATCCAATCAGTGT+TGG - chr5_3:38012313-38012332 Msa0810060:intron 45.0%
TCAAGAGGTCGTGTTTACCA+TGG - chr5_3:38012451-38012470 Msa0810060:CDS 45.0%
!! AGATTTCTAGGGGTGCTTCA+AGG - chr5_3:38012524-38012543 Msa0810060:intron 45.0%
GGAATCTTGTTCTCCTGAGT+TGG - chr5_3:38012558-38012577 Msa0810060:intron 45.0%
TTTCCAGTAGGCCATCTAAG+AGG + chr5_3:38012694-38012713 None:intergenic 45.0%
GCACAAGAGGTTCTTTCTTC+TGG - chr5_3:38012748-38012767 Msa0810060:intron 45.0%
GGGGAGAACCTGTATATTAC+TGG - chr5_3:38012836-38012855 Msa0810060:intron 45.0%
GTTGCCAATACCCGCAATTA+CGG - chr5_3:38012899-38012918 Msa0810060:intron 45.0%
AATACCCGCAATTACGGTTG+CGG - chr5_3:38012905-38012924 Msa0810060:intron 45.0%
ATATCCGCAACCGTAATTGC+GGG + chr5_3:38012912-38012931 None:intergenic 45.0%
CATATGAGAGGCTGAACGAA+AGG + chr5_3:38013027-38013046 None:intergenic 45.0%
TGGGTTCAACGTATATAGGG+GGG - chr5_3:38013253-38013272 Msa0810060:intron 45.0%
! AACTCAATCGCTGTTGCTTG+CGG - chr5_3:38013346-38013365 Msa0810060:CDS 45.0%
GTCTTGGTCCATATTGTGGT+TGG - chr5_3:38013394-38013413 Msa0810060:CDS 45.0%
TGTCTAGTACGGTTCGAATC+TGG + chr5_3:38013644-38013663 None:intergenic 45.0%
ACCGTACTAGACATAGGTTG+TGG - chr5_3:38013651-38013670 Msa0810060:CDS 45.0%
GCCACAACCTATGTCTAGTA+CGG + chr5_3:38013655-38013674 None:intergenic 45.0%
CTAGACATAGGTTGTGGCTA+TGG - chr5_3:38013657-38013676 Msa0810060:CDS 45.0%
AGCTGAACTTGACTACCAGA+AGG + chr5_3:38013744-38013763 None:intergenic 45.0%
!! GTGCAAGATGTGGCATTGAT+TGG - chr5_3:38013853-38013872 Msa0810060:intron 45.0%
!!! GATAGACTTTTAAGACCGGG+TGG - chr5_3:38014012-38014031 Msa0810060:CDS 45.0%
! GTCCAAACAAAGTATCCACC+CGG + chr5_3:38014030-38014049 None:intergenic 45.0%
! CATGTCCCAGCACAGATTTT+CGG + chr5_3:38014118-38014137 None:intergenic 45.0%
ATCAAGACCTCTACCACACA+GGG + chr5_3:38014311-38014330 None:intergenic 45.0%
GAACTGCAAAACTGCATAGG+AGG - chr5_3:38014352-38014371 Msa0810060:intron 45.0%
TTTCAATTGAAAGCCAGCGG+CGG + chr5_3:38014387-38014406 None:intergenic 45.0%
AAGGGAAAAATGGCCTTCTC+GGG - chr5_3:38014408-38014427 Msa0810060:intron 45.0%
ACATGTTGTAAGGCGGAGAA+GGG + chr5_3:38014677-38014696 None:intergenic 45.0%
AACATGTTGTAAGGCGGAGA+AGG + chr5_3:38014678-38014697 None:intergenic 45.0%
TGCAAGCTAGAAAGTCTGTG+TGG - chr5_3:38014751-38014770 Msa0810060:CDS 45.0%
GCAAGCTAGAAAGTCTGTGT+GGG - chr5_3:38014752-38014771 Msa0810060:CDS 45.0%
! TTGTCGGCGTTTTGCATGAT+TGG - chr5_3:38014835-38014854 Msa0810060:intron 45.0%
CATGCCAGGGAATCCATATA+AGG + chr5_3:38014884-38014903 None:intergenic 45.0%
CCCTACTTCATACAGAGTCA+TGG - chr5_3:38014945-38014964 Msa0810060:intron 45.0%
TCATAGGTTCTCGGGTATGT+CGG + chr5_3:38015324-38015343 None:intergenic 45.0%
ATACCCGAGAACCTATGACT+TGG - chr5_3:38015326-38015345 Msa0810060:CDS 45.0%
TGCACCAAGTCATAGGTTCT+CGG + chr5_3:38015333-38015352 None:intergenic 45.0%
AAGCGGCTGGGAAAATTCAA+GGG + chr5_3:38015373-38015392 None:intergenic 45.0%
TAAGCGGCTGGGAAAATTCA+AGG + chr5_3:38015374-38015393 None:intergenic 45.0%
! TTGAATTTTCCCAGCCGCTT+AGG - chr5_3:38015373-38015392 Msa0810060:CDS 45.0%
ATACTCCCTGAGTAACTCCA+GGG + chr5_3:38015927-38015946 None:intergenic 45.0%
GGCAAAGTGAGGGACTAATT+TGG - chr5_3:38016102-38016121 Msa0810060:intron 45.0%
! CTGTTGTTTGTCATGTGTGC+AGG - chr5_3:38016167-38016186 Msa0810060:intron 45.0%
TCTTGCTTCCCATTTCAGCT+GGG + chr5_3:38016250-38016269 None:intergenic 45.0%
CGAAATCGAAAGTAACAGCG+AGG - chr5_3:38016275-38016294 Msa0810060:five_prime_UTR 45.0%
TTCTTTGTCAGCTGCTTGTG+TGG + chr5_3:38016534-38016553 None:intergenic 45.0%
ACAGTGTCTGTGCTCACGAT+CGG - chr5_3:38011287-38011306 Msa0810060:three_prime_UTR 50.0%
ATGTCTAGGCCTCTACATCG+AGG - chr5_3:38012121-38012140 Msa0810060:intron 50.0%
! CCTCTACATCGAGGTGTTTC+CGG - chr5_3:38012130-38012149 Msa0810060:intron 50.0%
TGTTTCCGGTACTCGTGTAC+CGG - chr5_3:38012144-38012163 Msa0810060:intron 50.0%
! GTTTTCCGGTACACGAGTAC+CGG + chr5_3:38012152-38012171 None:intergenic 50.0%
CTTGGTGAGCCAACACTGAT+TGG + chr5_3:38012325-38012344 None:intergenic 50.0%
!! TTTCTAGGGGTGCTTCAAGG+TGG - chr5_3:38012527-38012546 Msa0810060:intron 50.0%
GTTCCTCTTAGATGGCCTAC+TGG - chr5_3:38012688-38012707 Msa0810060:intron 50.0%
! CTTCTGGAAGCTTGACCAAG+AGG - chr5_3:38012764-38012783 Msa0810060:intron 50.0%
CTGGAATATGTGGCTGATGC+TGG - chr5_3:38012855-38012874 Msa0810060:intron 50.0%
GCAACCGTAATTGCGGGTAT+TGG + chr5_3:38012906-38012925 None:intergenic 50.0%
GGGTTCAACGTATATAGGGG+GGG - chr5_3:38013254-38013273 Msa0810060:intron 50.0%
! ATCGCTGTTGCTTGCGGTTT+CGG - chr5_3:38013352-38013371 Msa0810060:CDS 50.0%
GGTTGTGGCTATGGTAGCTT+TGG - chr5_3:38013666-38013685 Msa0810060:CDS 50.0%
GTTCAGCTTACTCTTGAGCG+AGG - chr5_3:38013756-38013775 Msa0810060:CDS 50.0%
!! GGCATTGATTGGGACCAGAA+AGG - chr5_3:38013864-38013883 Msa0810060:intron 50.0%
GACCGGGTGGATACTTTGTT+TGG - chr5_3:38014025-38014044 Msa0810060:CDS 50.0%
ACGAGCATTTGTAAGCGGTG+AGG + chr5_3:38014052-38014071 None:intergenic 50.0%
TCAAGACCTCTACCACACAG+GGG + chr5_3:38014310-38014329 None:intergenic 50.0%
CATCAAGACCTCTACCACAC+AGG + chr5_3:38014312-38014331 None:intergenic 50.0%
GTGTGGTAGAGGTCTTGATG+TGG - chr5_3:38014312-38014331 Msa0810060:intron 50.0%
CGCGAACTGCAAAACTGCAT+AGG - chr5_3:38014349-38014368 Msa0810060:intron 50.0%
TTCAATTGAAAGCCAGCGGC+GGG + chr5_3:38014386-38014405 None:intergenic 50.0%
GGATTGCTGCCTGATGAACT+TGG - chr5_3:38014552-38014571 Msa0810060:intron 50.0%
GAGTCCTCACCAAGTTCATC+AGG + chr5_3:38014564-38014583 None:intergenic 50.0%
GTCTGTGTGGGTAATGAACG+TGG - chr5_3:38014764-38014783 Msa0810060:CDS 50.0%
ATGAACGTGGTCCCAAGAAC+TGG - chr5_3:38014777-38014796 Msa0810060:intron 50.0%
AAACCTCGGTCCTGGATCAA+GGG + chr5_3:38014816-38014835 None:intergenic 50.0%
AAAACCTCGGTCCTGGATCA+AGG + chr5_3:38014817-38014836 None:intergenic 50.0%
!! ATCCAGGACCGAGGTTTTGT+CGG - chr5_3:38014819-38014838 Msa0810060:intron 50.0%
GCAAAACGCCGACAAAACCT+CGG + chr5_3:38014830-38014849 None:intergenic 50.0%
! GACTCTGAGCCAAAGGTATG+TGG + chr5_3:38015213-38015232 None:intergenic 50.0%
TCTGCAAGACTCTGAGCCAA+AGG + chr5_3:38015220-38015239 None:intergenic 50.0%
GCACCAAGTCATAGGTTCTC+GGG + chr5_3:38015332-38015351 None:intergenic 50.0%
TGCTGCATGCACCAAGTCAT+AGG + chr5_3:38015340-38015359 None:intergenic 50.0%
!! TATGACTTGGTGCATGCAGC+AGG - chr5_3:38015339-38015358 Msa0810060:CDS 50.0%
!! ATGACTTGGTGCATGCAGCA+GGG - chr5_3:38015340-38015359 Msa0810060:CDS 50.0%
TCAAGCATGGTGCACCTAAG+CGG + chr5_3:38015390-38015409 None:intergenic 50.0%
! TGTCATGTCAGATTGGTCCC+TGG - chr5_3:38015907-38015926 Msa0810060:intron 50.0%
ATTGGTCCCTGGAGTTACTC+AGG - chr5_3:38015918-38015937 Msa0810060:intron 50.0%
TTGGTCCCTGGAGTTACTCA+GGG - chr5_3:38015919-38015938 Msa0810060:intron 50.0%
GATACTCCCTGAGTAACTCC+AGG + chr5_3:38015928-38015947 None:intergenic 50.0%
GGGACCAAATTGACACATGC+TGG - chr5_3:38016081-38016100 Msa0810060:intron 50.0%
TGACACATGCTGGCAAAGTG+AGG - chr5_3:38016091-38016110 Msa0810060:intron 50.0%
GACACATGCTGGCAAAGTGA+GGG - chr5_3:38016092-38016111 Msa0810060:intron 50.0%
GTTTGTCATGTGTGCAGGGT+TGG - chr5_3:38016172-38016191 Msa0810060:intron 50.0%
TCTTAGCAGCCCAGCTGAAA+TGG - chr5_3:38016238-38016257 Msa0810060:five_prime_UTR 50.0%
CTTAGCAGCCCAGCTGAAAT+GGG - chr5_3:38016239-38016258 Msa0810060:five_prime_UTR 50.0%
CTCTTGCTTCCCATTTCAGC+TGG + chr5_3:38016251-38016270 None:intergenic 50.0%
ATGACCCTATGCACGCCTTA+CGG + chr5_3:38016504-38016523 None:intergenic 50.0%
CAGACACTGTCTGCTCGCTT+CGG + chr5_3:38011277-38011296 None:intergenic 55.0%
CCGGAAACACCTCGATGTAG+AGG + chr5_3:38012133-38012152 None:intergenic 55.0%
GGGCCGAGAACCTTTCTTTC+TGG + chr5_3:38014290-38014309 None:intergenic 55.0%
! GCTGCCTGATGAACTTGGTG+AGG - chr5_3:38014557-38014576 Msa0810060:intron 55.0%
TTGGTGAGGACTCTGACAGC+TGG - chr5_3:38014571-38014590 Msa0810060:intron 55.0%
TCTGATCATCCGAAGAGGCC+CGG - chr5_3:38014642-38014661 Msa0810060:intron 55.0%
GGTTCTCGGGTATGTCGGAA+AGG + chr5_3:38015319-38015338 None:intergenic 55.0%
TGACAGGTTACTTCGCCCAG+AGG - chr5_3:38015425-38015444 Msa0810060:CDS 55.0%
TTACGGCTGCACAGGAGAAG+CGG + chr5_3:38016487-38016506 None:intergenic 55.0%
AAAGGTTCTCGGCCCCTGTG+TGG - chr5_3:38014295-38014314 Msa0810060:intron 60.0%
CTTCCCTTGATCCAGGACCG+AGG - chr5_3:38014810-38014829 Msa0810060:intron 60.0%
TTGTGTGGCCTCTAGGTGCG+AGG - chr5_3:38015293-38015312 Msa0810060:CDS 60.0%
CATGGTGCACCTAAGCGGCT+GGG + chr5_3:38015385-38015404 None:intergenic 60.0%
GCTTCTCCTGTGCAGCCGTA+AGG - chr5_3:38016486-38016505 Msa0810060:five_prime_UTR 60.0%
TGCAGCCGTAAGGCGTGCAT+AGG - chr5_3:38016496-38016515 Msa0810060:five_prime_UTR 60.0%
GCAGCCGTAAGGCGTGCATA+GGG - chr5_3:38016497-38016516 Msa0810060:five_prime_UTR 60.0%
TCTCGGCCCCTGTGTGGTAG+AGG - chr5_3:38014301-38014320 Msa0810060:intron 65.0%
TCCTCGTCACCGGGCCTCTT+CGG + chr5_3:38014654-38014673 None:intergenic 65.0%
GGAGAAGGGTCCTCGTCACC+GGG + chr5_3:38014663-38014682 None:intergenic 65.0%
CGGAGAAGGGTCCTCGTCAC+CGG + chr5_3:38014664-38014683 None:intergenic 65.0%
CGCCGACAAAACCTCGGTCC+TGG + chr5_3:38014824-38014843 None:intergenic 65.0%
CGGAAAGGCCTCGCACCTAG+AGG + chr5_3:38015304-38015323 None:intergenic 65.0%
GCATGGTGCACCTAAGCGGC+TGG + chr5_3:38015386-38015405 None:intergenic 65.0%
TGCACGCCTTACGGCTGCAC+AGG + chr5_3:38016495-38016514 None:intergenic 65.0%
GAGGAACACAGACCCGCCGC+TGG - chr5_3:38014371-38014390 Msa0810060:intron 70.0%
TCCGAAGAGGCCCGGTGACG+AGG - chr5_3:38014650-38014669 Msa0810060:intron 70.0%
CGGCTGCACAGGAGAAGCGG+TGG + chr5_3:38016484-38016503 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 38011076 38016709 38011076 ID=Msa0810060;Name=Msa0810060
chr5_3 mRNA 38011076 38016709 38011076 ID=Msa0810060-mRNA-1;Parent=Msa0810060;Name=Msa0810060-mRNA-1;_AED=0.02;_eAED=0.02;_QI=669|1|1|1|0.87|0.77|9|362|675
chr5_3 exon 38011076 38011596 38011076 ID=Msa0810060-mRNA-1:exon:11645;Parent=Msa0810060-mRNA-1
chr5_3 exon 38012339 38012477 38012339 ID=Msa0810060-mRNA-1:exon:11644;Parent=Msa0810060-mRNA-1
chr5_3 exon 38012929 38013232 38012929 ID=Msa0810060-mRNA-1:exon:11643;Parent=Msa0810060-mRNA-1
chr5_3 exon 38013322 38013494 38013322 ID=Msa0810060-mRNA-1:exon:11642;Parent=Msa0810060-mRNA-1
chr5_3 exon 38013583 38013796 38013583 ID=Msa0810060-mRNA-1:exon:11641;Parent=Msa0810060-mRNA-1
chr5_3 exon 38013900 38014140 38013900 ID=Msa0810060-mRNA-1:exon:11640;Parent=Msa0810060-mRNA-1
chr5_3 exon 38014658 38014790 38014658 ID=Msa0810060-mRNA-1:exon:11639;Parent=Msa0810060-mRNA-1
chr5_3 exon 38015000 38015847 38015000 ID=Msa0810060-mRNA-1:exon:11638;Parent=Msa0810060-mRNA-1
chr5_3 exon 38016224 38016709 38016224 ID=Msa0810060-mRNA-1:exon:11637;Parent=Msa0810060-mRNA-1
chr5_3 five_prime_UTR 38016224 38016709 38016224 ID=Msa0810060-mRNA-1:five_prime_utr;Parent=Msa0810060-mRNA-1
chr5_3 five_prime_UTR 38015665 38015847 38015665 ID=Msa0810060-mRNA-1:five_prime_utr;Parent=Msa0810060-mRNA-1
chr5_3 CDS 38015000 38015664 38015000 ID=Msa0810060-mRNA-1:cds;Parent=Msa0810060-mRNA-1
chr5_3 CDS 38014658 38014790 38014658 ID=Msa0810060-mRNA-1:cds;Parent=Msa0810060-mRNA-1
chr5_3 CDS 38013900 38014140 38013900 ID=Msa0810060-mRNA-1:cds;Parent=Msa0810060-mRNA-1
chr5_3 CDS 38013583 38013796 38013583 ID=Msa0810060-mRNA-1:cds;Parent=Msa0810060-mRNA-1
chr5_3 CDS 38013322 38013494 38013322 ID=Msa0810060-mRNA-1:cds;Parent=Msa0810060-mRNA-1
chr5_3 CDS 38012929 38013232 38012929 ID=Msa0810060-mRNA-1:cds;Parent=Msa0810060-mRNA-1
chr5_3 CDS 38012339 38012477 38012339 ID=Msa0810060-mRNA-1:cds;Parent=Msa0810060-mRNA-1
chr5_3 CDS 38011438 38011596 38011438 ID=Msa0810060-mRNA-1:cds;Parent=Msa0810060-mRNA-1
chr5_3 three_prime_UTR 38011076 38011437 38011076 ID=Msa0810060-mRNA-1:three_prime_utr;Parent=Msa0810060-mRNA-1
Gene Sequence

>Msa0810060

ATGTCTAGGCCTCTACATCGAGGTGTTTCCGGTACTCGTGTACCGGAAAACATCAATGATGATACATGGGACTCACAATCCAAAGATAAATCAGAAAAAGATGATTTTGATAGAAGGGGTTCTTCAGATCACACCCCTTTAGCATTGAGGTCTCCTTTGAAGTTGTTGTTTTCAGATAAAGAGAATGGTTTTGCATCTGATCCAATCAGTGTTGGCTCACCAAGAAGCCGTTTTAAGTTTATGATGTTTTTGGTGAAATTTAGTTTAGTTTTTATAGTTGTTTTTGCTCTTGTTGGATCTTTTTTGTGGACTTTGAATTTGTCGTCTTCGTCAAGAGGTCGTGTTTACCATGGTTATAGGAGACTTCAAGAGAAACTTGTTTCAGATTTGTTGGATATTGGTGAGATTTCTAGGGGTGCTTCAAGGTGGAAAGAATTGGAATCTTGTTCTCCTGAGTTGGAAAATTTTGTTCCTTGCTTTAATGTTTCCGATGGAAATGAGTTTGAAAGGAAATGTGAATATGAGCAGAGTCAAAATTGTTTGGTTCTGCCACCAGTTAATTACAAAGTTCCTCTTAGATGGCCTACTGGAAAAGATGTTATTTGGGTTGCTAATGTGAAAATCACTGCACAAGAGGTTCTTTCTTCTGGAAGCTTGACCAAGAGGATGATGATGTTGGATGAAGAACAAATTTCCTTTCGTTCAGCCTCTCATATGTTTGATGGAGTTGAAGACTATTCACATCAGATTGCTGAAATGATTGGACTTAGAAATGAATCTTCCTTCATACAAGCTGGTATTCGAACCGTACTAGACATAGGTTGTGGCTATGGTAGCTTTGGAGCACACCTCTTTGACAGTCAAATTTTGACTTTGTGCATTGCAAACTATGAGCCTTCTGGTAGTCAAGTTCAGCTTACTCTTGAGCGAGGTCTTCCTGCTATGATTGCTTCTTTCACTTCAAAACAGTTGCCATATCCATCTCTGTCTTTTGATATGTTACATTGTGCAAGATGTGGCATTGATTGGGACCAGAAAGATGGCAATCTCTTGATTGAAGCTGATAGACTTTTAAGACCGGGTGGATACTTTGTTTGGACCTCACCGCTTACAAATGCTCGTAACAAGGAGAATCAGAAAAGGTGGAAGATTGTGCACGACTTTACCGAAAATCTGTGCTGGGACATGTTATCACAGCAAGATGAAACTGTTGTATTTAAAAAAGCAAGCAAAAAGAATTGTTATACATCGAGAAAGAAAGGTTCTCGGCCCCTGTGTGGTAGAGGTCTTGATGTGGAGTCTCCATATTATCGCGAACTGCAAAACTGCATAGGAGGAACACAGACCCGCCGCTGGCTTTCAATTGAAAAAAGGGAAAAATGGCCTTCTCGGGCTAATTTGAACAAGAATGAGTTAGCCATACATGGATTGCTGCCTGATGAACTTGGTGAGGACTCTGACAGCTGGAAAGCAGCAGTGCAAAATTATTGGTCACTCCTGTCGCCTGTAATATTTTCTGATCATCCGAAGAGGCCCGGTGACGAGGACCCTTCTCCGCCTTACAACATGTTCAGAAATGTGTTAGACATGAATGCTAACTTTGGTGGCTTTAATTCTGCTTTGTTGCAAGCTAGAAAGTCTGTGTGGGTAATGAACGTGGTCCCAAGAACTGGACCTAACTATCTTCCCTTGATCCAGGACCGAGGTTTTGTCGGCGTTTTGCATGATTGGTGCGAGGCCTTTCCGACATACCCGAGAACCTATGACTTGGTGCATGCAGCAGGGATTCTATCCCTTGAATTTTCCCAGCCGCTTAGGTGCACCATGCTTGATCTGTTCATTGAAATTGACAGGTTACTTCGCCCAGAGGGTTGGATTATAATTCGCGACACTATTCCTTTAATAGAATCAGCTAGAGTCTTAGCAGCCCAGCTGAAATGGGAAGCAAGAGTGATCGAAATCGAAAGTAACAGCGAGGAGAAACTCCTGATATGCCAGAAACCTTTCTTCAAGAAACATGCAATCTAA
Protein sequence

>Msa0810060

MSRPLHRGVSGTRVPENINDDTWDSQSKDKSEKDDFDRRGSSDHTPLALRSPLKLLFSDKENGFASDPISVGSPRSRFKFMMFLVKFSLVFIVVFALVGSFLWTLNLSSSSRGRVYHGYRRLQEKLVSDLLDIGEISRGASRWKELESCSPELENFVPCFNVSDGNEFERKCEYEQSQNCLVLPPVNYKVPLRWPTGKDVIWVANVKITAQEVLSSGSLTKRMMMLDEEQISFRSASHMFDGVEDYSHQIAEMIGLRNESSFIQAGIRTVLDIGCGYGSFGAHLFDSQILTLCIANYEPSGSQVQLTLERGLPAMIASFTSKQLPYPSLSFDMLHCARCGIDWDQKDGNLLIEADRLLRPGGYFVWTSPLTNARNKENQKRWKIVHDFTENLCWDMLSQQDETVVFKKASKKNCYTSRKKGSRPLCGRGLDVESPYYRELQNCIGGTQTRRWLSIEKREKWPSRANLNKNELAIHGLLPDELGEDSDSWKAAVQNYWSLLSPVIFSDHPKRPGDEDPSPPYNMFRNVLDMNANFGGFNSALLQARKSVWVMNVVPRTGPNYLPLIQDRGFVGVLHDWCEAFPTYPRTYDLVHAAGILSLEFSQPLRCTMLDLFIEIDRLLRPEGWIIIRDTIPLIESARVLAAQLKWEARVIEIESNSEEKLLICQKPFFKKHAI*