AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0850590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0850590 MtrunA17_Chr5g0426281 99.112 676 4 2 1 675 1 675 0.0 1378
Msa0850590 MtrunA17_Chr3g0115931 76.768 693 141 4 1 674 1 692 0.0 1119
Msa0850590 MtrunA17_Chr4g0043121 47.619 420 194 8 74 476 15 425 1.08e-133 400
Msa0850590 MtrunA17_Chr1g0187601 37.409 548 300 10 144 670 89 614 1.43e-118 367
Msa0850590 MtrunA17_Chr1g0167381 37.739 522 285 10 144 648 90 588 1.97e-115 359
Msa0850590 MtrunA17_Chr1g0183721 34.043 611 352 13 72 667 8 582 2.60e-112 350
Msa0850590 MtrunA17_Chr3g0112341 33.702 543 321 12 144 671 151 669 3.54e-104 331
Msa0850590 MtrunA17_Chr7g0246681 33.213 554 322 13 136 671 65 588 4.27e-97 310
Msa0850590 MtrunA17_Chr1g0159741 35.294 527 311 14 151 669 154 658 3.47e-96 310
Msa0850590 MtrunA17_Chr5g0435751 32.096 539 307 11 144 667 123 617 1.06e-95 308
Msa0850590 MtrunA17_Chr1g0203741 31.811 635 348 21 81 670 23 617 3.39e-94 304
Msa0850590 MtrunA17_Chr8g0350351 32.228 543 324 10 144 670 86 600 8.22e-94 302
Msa0850590 MtrunA17_Chr8g0350391 32.155 566 315 16 140 670 99 630 3.11e-93 301
Msa0850590 MtrunA17_Chr1g0171781 34.854 548 304 13 146 670 86 603 4.43e-93 300
Msa0850590 MtrunA17_Chr6g0472571 32.973 555 311 17 149 674 108 630 1.21e-92 300
Msa0850590 MtrunA17_Chr8g0388881 31.551 561 322 17 144 674 96 624 7.04e-92 298
Msa0850590 MtrunA17_Chr5g0437501 32.197 528 295 14 169 675 125 610 1.48e-91 296
Msa0850590 MtrunA17_Chr8g0369481 31.365 542 320 13 149 667 73 585 4.89e-91 295
Msa0850590 MtrunA17_Chr5g0409411 32.541 547 315 14 149 671 75 591 5.78e-91 295
Msa0850590 MtrunA17_Chr3g0130381 33.100 571 311 18 132 671 247 777 7.40e-91 299
Msa0850590 MtrunA17_Chr4g0043131 66.848 184 59 1 489 672 4 185 1.52e-90 279
Msa0850590 MtrunA17_Chr3g0125511 33.151 549 295 15 156 671 234 743 2.45e-90 297
Msa0850590 MtrunA17_Chr3g0113981 31.881 505 297 12 175 671 204 669 2.73e-87 287
Msa0850590 MtrunA17_Chr4g0055031 31.327 565 321 19 136 670 76 603 3.77e-87 285
Msa0850590 MtrunA17_Chr7g0246701 32.246 552 314 18 149 670 104 625 1.17e-86 284
Msa0850590 MtrunA17_Chr7g0214551 32.246 552 311 14 140 660 37 556 1.46e-86 282
Msa0850590 MtrunA17_Chr8g0384431 32.830 530 298 15 151 656 301 796 9.94e-85 283
Msa0850590 MtrunA17_Chr5g0416991 30.212 566 332 16 132 670 70 599 4.79e-84 276
Msa0850590 MtrunA17_Chr8g0361791 30.212 566 333 14 132 670 70 600 7.45e-84 276
Msa0850590 MtrunA17_Chr3g0092501 30.505 554 319 17 144 670 83 597 1.89e-82 272
Msa0850590 MtrunA17_Chr8g0372471 32.108 517 302 13 169 671 410 891 1.23e-80 274
Msa0850590 MtrunA17_Chr1g0155141 31.227 554 306 19 142 671 198 700 4.47e-78 263
Msa0850590 MtrunA17_Chr5g0404761 30.897 301 168 9 388 675 4 277 6.83e-41 150
Msa0850590 MtrunA17_Chr5g0404771 36.406 217 127 5 169 383 353 560 1.33e-36 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0850590 AT1G78240.1 67.579 694 196 8 1 675 1 684 0.0 956
Msa0850590 AT1G78240.2 67.579 694 196 8 1 675 1 684 0.0 956
Msa0850590 AT1G13860.4 52.053 609 276 8 70 672 5 603 0.0 660
Msa0850590 AT1G13860.3 52.053 609 276 8 70 672 5 603 0.0 660
Msa0850590 AT1G13860.1 52.053 609 276 8 70 672 5 603 0.0 660
Msa0850590 AT1G13860.5 52.053 609 276 8 70 672 5 603 0.0 660
Msa0850590 AT2G03480.1 51.378 617 265 10 70 672 11 606 0.0 634
Msa0850590 AT2G03480.2 50.567 617 259 9 70 672 11 595 0.0 624
Msa0850590 AT1G13860.2 56.608 454 185 6 224 672 1 447 0.0 548
Msa0850590 AT2G03480.3 47.981 421 199 8 70 476 11 425 1.03e-127 385
Msa0850590 AT1G04430.1 36.738 607 330 12 84 660 10 592 3.90e-116 362
Msa0850590 AT1G04430.3 36.738 607 330 12 84 660 10 592 3.90e-116 362
Msa0850590 AT1G04430.2 36.738 607 330 12 84 660 10 592 3.90e-116 362
Msa0850590 AT3G23300.2 36.581 544 299 11 149 670 82 601 8.28e-115 358
Msa0850590 AT3G23300.1 36.581 544 299 11 149 670 82 601 8.28e-115 358
Msa0850590 AT5G14430.1 36.625 557 303 11 144 675 78 609 9.36e-112 350
Msa0850590 AT4G14360.1 36.822 516 288 9 149 648 79 572 4.18e-111 348
Msa0850590 AT4G14360.2 36.822 516 288 9 149 648 79 572 4.18e-111 348
Msa0850590 AT5G14430.2 36.266 557 305 11 144 675 78 609 2.38e-110 346
Msa0850590 AT5G06050.1 35.531 546 303 13 144 669 147 663 3.89e-109 345
Msa0850590 AT1G77260.1 34.254 543 308 11 144 667 141 653 2.63e-102 327
Msa0850590 AT2G39750.1 32.364 550 333 12 137 671 168 693 9.22e-102 326
Msa0850590 AT5G04060.1 33.966 527 308 11 153 670 102 597 7.87e-98 313
Msa0850590 AT3G10200.1 35.209 551 297 15 146 670 72 588 8.16e-98 313
Msa0850590 AT4G19120.1 32.982 570 318 16 127 670 59 590 3.46e-96 309
Msa0850590 AT4G19120.2 32.982 570 318 16 127 670 59 590 3.46e-96 309
Msa0850590 AT1G31850.1 32.844 545 310 16 149 667 79 593 1.21e-95 307
Msa0850590 AT1G31850.2 32.844 545 310 16 149 667 79 593 1.21e-95 307
Msa0850590 AT1G31850.4 32.844 545 310 16 149 667 79 593 1.21e-95 307
Msa0850590 AT1G31850.3 32.844 545 310 16 149 667 79 593 1.21e-95 307
Msa0850590 AT4G00740.1 32.573 614 331 16 89 671 33 594 4.10e-95 306
Msa0850590 AT4G00740.2 32.573 614 331 16 89 671 33 594 4.10e-95 306
Msa0850590 AT1G33170.1 32.258 558 316 17 144 670 108 634 1.03e-92 301
Msa0850590 AT4G10440.1 31.598 557 320 16 144 670 91 616 3.10e-92 299
Msa0850590 AT2G43200.2 34.457 534 295 15 149 658 94 596 5.77e-91 295
Msa0850590 AT2G43200.1 34.457 534 295 15 149 658 94 596 5.77e-91 295
Msa0850590 AT4G00750.1 32.865 569 314 19 141 674 91 626 6.74e-91 296
Msa0850590 AT2G45750.1 33.273 550 297 15 148 661 89 604 1.30e-90 295
Msa0850590 AT2G34300.2 32.061 524 296 14 169 671 274 758 2.27e-88 293
Msa0850590 AT2G34300.3 32.061 524 296 14 169 671 274 758 2.27e-88 293
Msa0850590 AT2G34300.1 32.061 524 296 14 169 671 274 758 2.27e-88 293
Msa0850590 AT1G26850.2 31.306 559 326 14 140 670 80 608 4.58e-88 288
Msa0850590 AT1G26850.1 31.306 559 326 14 140 670 80 608 4.58e-88 288
Msa0850590 AT2G40280.1 30.605 562 333 16 123 671 65 582 4.58e-88 287
Msa0850590 AT5G64030.1 32.051 546 314 16 155 675 308 821 1.78e-87 291
Msa0850590 AT1G29470.1 33.333 519 296 14 169 671 274 758 7.17e-87 288
Msa0850590 AT1G29470.2 33.333 519 296 14 169 671 274 758 7.17e-87 288
Msa0850590 AT3G56080.1 31.471 537 292 15 143 651 107 595 9.98e-87 284
Msa0850590 AT3G10200.2 35.130 501 268 14 146 623 72 538 1.60e-86 283
Msa0850590 AT4G18030.1 31.341 552 319 16 146 670 85 603 2.02e-86 283
Msa0850590 AT3G51070.1 32.051 546 306 15 155 671 381 890 1.84e-85 287
Msa0850590 AT1G19430.1 31.481 540 300 17 155 671 231 723 8.61e-76 258
Msa0850590 AT1G19430.3 31.481 540 300 17 155 671 231 723 8.61e-76 258
Msa0850590 AT3G56080.2 31.612 484 258 13 143 598 107 545 4.07e-75 251
Msa0850590 AT3G51070.2 32.981 473 257 14 155 598 381 822 2.21e-74 256
Msa0850590 AT4G19120.3 30.252 476 272 14 127 577 59 499 1.21e-66 228
Msa0850590 AT1G26850.3 29.025 441 261 11 140 555 80 493 2.24e-54 194
Msa0850590 AT1G19430.2 29.440 411 216 16 155 537 231 595 2.59e-38 150

Find 194 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTGGAAAAGATGTTATT+TGG 0.156678 5_4:-40164604 Msa0850590:CDS
TTTATGATAATTATGGAAAT+TGG 0.166001 5_4:+40160913 None:intergenic
TAAACACAATTATTTATTAT+TGG 0.170520 5_4:-40160713 Msa0850590:three_prime_UTR
ACTCTAGCTGATTCTATTAA+AGG 0.186941 5_4:+40161096 None:intergenic
GCAGAACTTTATGATAATTA+TGG 0.199837 5_4:+40160906 None:intergenic
ATAAATAATTCTATGATATA+GGG 0.207007 5_4:+40160623 None:intergenic
CCTAAACTCAAATACCTTTC+TGG 0.213244 5_4:+40163435 None:intergenic
GTTTCTTGAAGAAAGGTTTC+TGG 0.232166 5_4:+40160998 None:intergenic
GCACAAGAGGTTCTTTCTTC+TGG 0.244322 5_4:-40164560 Msa0850590:CDS
TGGATATTGGTGAGATTTCT+AGG 0.258788 5_4:-40164796 Msa0850590:CDS
CTGGAGCTGGATTCTCAAAA+AGG 0.266365 5_4:-40165354 Msa0850590:five_prime_UTR
AATAAATAATTCTATGATAT+AGG 0.269595 5_4:+40160622 None:intergenic
AATTGTTTAGTTTGATCTAA+TGG 0.273439 5_4:+40166133 None:intergenic
CCTCTACATCGAGGTGTTTC+CGG 0.278716 5_4:-40165178 Msa0850590:CDS
AAACACAATTATTTATTATT+GGG 0.280121 5_4:-40160712 Msa0850590:three_prime_UTR
CTCTTGCTTCCCATTTCAGC+TGG 0.280333 5_4:+40161064 None:intergenic
TATTATGGTATAGTTTCTTT+AGG 0.298118 5_4:+40160951 None:intergenic
ATCAACTTAAAACGGCTTCT+TGG 0.300302 5_4:+40164968 None:intergenic
GACCGGGTGGATACTTTGTT+TGG 0.300878 5_4:-40163288 Msa0850590:CDS
AGCAAAACACCAGAGGTTAA+TGG 0.305384 5_4:+40165831 None:intergenic
TCCTCGTCACCGGGCCTCTT+CGG 0.310023 5_4:+40162662 None:intergenic
AGAGGAACTTTGTAATTAAC+TGG 0.318130 5_4:+40164635 None:intergenic
AGAAAGGTTTCTGGCATATC+AGG 0.322309 5_4:+40161007 None:intergenic
AAGCAGCAGTGCAAAATTAT+TGG 0.326097 5_4:-40162718 Msa0850590:CDS
GTTTCAGATTTGTTGGATAT+TGG 0.327113 5_4:-40164809 Msa0850590:CDS
GAAACTTGTTTCAGATTTGT+TGG 0.328549 5_4:-40164816 Msa0850590:CDS
AAATGAATATATGTATATTA+TGG 0.332547 5_4:+40160936 None:intergenic
TCTTAGCAGCCCAGCTGAAA+TGG 0.337346 5_4:-40161074 Msa0850590:CDS
ATTACAAAGTTCCTCTTAGA+TGG 0.341609 5_4:-40164628 Msa0850590:CDS
AGATAGTTAGGTCCAGTTCT+TGG 0.345037 5_4:+40162524 None:intergenic
TACTGGAAAAGATGTTATTT+GGG 0.346347 5_4:-40164603 Msa0850590:CDS
TCAGCCTCTCATATGTTTGA+TGG 0.353415 5_4:-40164280 Msa0850590:CDS
CATCAGATTGCTGAAATGAT+TGG 0.365226 5_4:-40164241 Msa0850590:CDS
CTTGGTGAGCCAACACTGAT+TGG 0.369399 5_4:+40164986 None:intergenic
TAGACTTGTGATTCTTCAAC+TGG 0.369806 5_4:-40165373 Msa0850590:five_prime_UTR
GGTTGTGGCTATGGTAGCTT+TGG 0.380939 5_4:-40163647 Msa0850590:CDS
TGAGCAGAGTCAAAATTGTT+TGG 0.393888 5_4:-40164666 Msa0850590:CDS
ATCTGTTCATTGAAATTGAC+AGG 0.398613 5_4:-40161904 Msa0850590:CDS
GATAGTTAGGTCCAGTTCTT+GGG 0.401757 5_4:+40162525 None:intergenic
AGTAAACAACACTCTTGTAT+TGG 0.408596 5_4:-40165300 Msa0850590:five_prime_UTR
AAGGAGACCTCAATGCTAAA+GGG 0.408924 5_4:+40165053 None:intergenic
TGGATCAAGGGAAGATAGTT+AGG 0.412196 5_4:+40162512 None:intergenic
TCAAAAGACAGAGATGGATA+TGG 0.414142 5_4:+40163494 None:intergenic
TACATAACAATTACCATGTA+TGG 0.417975 5_4:+40162858 None:intergenic
GTGCAAGATGTGGCATTGAT+TGG 0.420971 5_4:-40163460 Msa0850590:CDS
TGCTTCAAGGTGGAAAGAAT+TGG 0.422058 5_4:-40164771 Msa0850590:CDS
GGATGATCAGAAAATATTAC+AGG 0.422300 5_4:+40162683 None:intergenic
ATGAACGTGGTCCCAAGAAC+TGG 0.422464 5_4:-40162536 Msa0850590:CDS
AACTATGTCGGTGATGTGTC+GGG 0.425439 5_4:+40166191 None:intergenic
TGTGATTCTTCAACTGGAGC+TGG 0.427549 5_4:-40165367 Msa0850590:five_prime_UTR
GGATATTGGTGAGATTTCTA+GGG 0.429174 5_4:-40164795 Msa0850590:CDS
ATTGCATGTTTCTTGAAGAA+AGG 0.436409 5_4:+40160991 None:intergenic
CGGAGAAGGGTCCTCGTCAC+CGG 0.441507 5_4:+40162652 None:intergenic
GGAATCTTGTTCTCCTGAGT+TGG 0.443168 5_4:-40164750 Msa0850590:CDS
AAGCAGCTGACAAAGAATAT+TGG 0.444728 5_4:-40160775 Msa0850590:three_prime_UTR
TATGACTTGGTGCATGCAGC+AGG 0.446091 5_4:-40161974 Msa0850590:CDS
GTCGAATGATTAATGTGCAT+TGG 0.448491 5_4:+40165898 None:intergenic
GTCGTGTTTACCATGGTTAT+AGG 0.449066 5_4:-40164850 Msa0850590:CDS
ACATTTCTGAACATGTTGTA+AGG 0.452439 5_4:+40162629 None:intergenic
GTTCCTCTTAGATGGCCTAC+TGG 0.452619 5_4:-40164620 Msa0850590:CDS
GAGTCCTCACCAAGTTCATC+AGG 0.457244 5_4:+40162752 None:intergenic
CGCCGACAAAACCTCGGTCC+TGG 0.457781 5_4:+40162492 None:intergenic
CTTAGCAGCCCAGCTGAAAT+GGG 0.459246 5_4:-40161073 Msa0850590:CDS
TAAGTGGCTGGGAAAATTCA+AGG 0.460048 5_4:+40161942 None:intergenic
GCATGGTGCACCTAAGTGGC+TGG 0.460368 5_4:+40161930 None:intergenic
AAAACCTCGGTCCTGGATCA+AGG 0.462140 5_4:+40162499 None:intergenic
TGCTGCATGCACCAAGTCAT+AGG 0.464175 5_4:+40161976 None:intergenic
CAGACACTGTCTGCTCGCTT+CGG 0.470208 5_4:+40166041 None:intergenic
ATACAAAGTGAGGATTGAAA+AGG 0.474509 5_4:-40160882 Msa0850590:three_prime_UTR
TTCAATTGAAAGCCAGCGGC+GGG 0.475046 5_4:+40162930 None:intergenic
TCTTGCTTCCCATTTCAGCT+GGG 0.475890 5_4:+40161065 None:intergenic
AAAACATCATCAACTTAAAA+CGG 0.476140 5_4:+40164960 None:intergenic
CTAGACATAGGTTGTGGCTA+TGG 0.482030 5_4:-40163656 Msa0850590:CDS
CCGATGGAAATGAGTTTGAA+AGG 0.483849 5_4:-40164700 Msa0850590:CDS
GACATGAATGCTAACTTTGG+TGG 0.484582 5_4:-40162602 Msa0850590:CDS
TTTCCAGAAAGAAAGGTTCT+CGG 0.484738 5_4:-40163029 Msa0850590:intron
AAAGGAGACCTCAATGCTAA+AGG 0.488766 5_4:+40165052 None:intergenic
GTGAAAGAAGCAATCATAGC+AGG 0.489787 5_4:+40163530 None:intergenic
ACTTTACCGAAAATCTGTGC+TGG 0.491547 5_4:-40163204 Msa0850590:CDS
GCATCTGATCCAATCAGTGT+TGG 0.492382 5_4:-40164995 Msa0850590:CDS
AGATTTCTAGGGGTGCTTCA+AGG 0.496300 5_4:-40164784 Msa0850590:CDS
TCTCGGCCCCTGTGTGGTAG+AGG 0.498322 5_4:-40163012 Msa0850590:CDS
TAAATAATTCTATGATATAG+GGG 0.498850 5_4:+40160624 None:intergenic
TGCAGCCGTAAGGCGTGCAT+AGG 0.500466 5_4:-40160816 Msa0850590:three_prime_UTR
CTTGAAGTCTCCTATAACCA+TGG 0.505745 5_4:+40164840 None:intergenic
AAAAGAATTGTTATACATCA+AGG 0.506775 5_4:-40163132 Msa0850590:intron
TGCAAGATGTGGCATTGATT+GGG 0.507894 5_4:-40163459 Msa0850590:CDS
CCTTGCTTTAATGTTTCCGA+TGG 0.509748 5_4:-40164716 Msa0850590:CDS
TGCACCAAGTCATAGGTTCT+CGG 0.510253 5_4:+40161983 None:intergenic
TCTGAAAACAACAACTTCAA+AGG 0.510267 5_4:+40165034 None:intergenic
GCACCAAGTCATAGGTTCTC+GGG 0.511240 5_4:+40161984 None:intergenic
AACATGTTGTAAGGCGGAGA+AGG 0.511703 5_4:+40162638 None:intergenic
ATCACACCCCTTTAGCATTG+AGG 0.514349 5_4:-40165060 Msa0850590:CDS
ATGACCCTATGCACGCCTTA+CGG 0.516248 5_4:+40160811 None:intergenic
ATTGCAAACTATGAGCCTTC+TGG 0.516898 5_4:-40163587 Msa0850590:CDS
TCTGATCATCCGAAGAGGCC+CGG 0.518115 5_4:-40162671 Msa0850590:CDS
TCGGTGATGTGTCGGGGTCA+AGG 0.518558 5_4:+40166198 None:intergenic
CCTTTCAAACTCATTTCCAT+CGG 0.521679 5_4:+40164700 None:intergenic
TGCACGCCTTACGGCTGCAC+AGG 0.523599 5_4:+40160820 None:intergenic
GCTTCTCCTGTGCAGCCGTA+AGG 0.525312 5_4:-40160826 Msa0850590:three_prime_UTR
CAATTGCAGGATGATGATGT+TGG 0.529476 5_4:-40164326 Msa0850590:intron
AAAACATCAATGATGATACA+TGG 0.529523 5_4:-40165141 Msa0850590:CDS
TCAAAATTTGACTGTCAAAG+AGG 0.532274 5_4:+40163618 None:intergenic
GAGGAACACAGACCCGCCGC+TGG 0.534244 5_4:-40162942 Msa0850590:CDS
TTGGTGAGGACTCTGACAGC+TGG 0.536321 5_4:-40162742 Msa0850590:CDS
GAACTATGTCGGTGATGTGT+CGG 0.537001 5_4:+40166190 None:intergenic
GAATCTTCCTTCATACAAGC+TGG 0.538007 5_4:-40164208 Msa0850590:CDS
TACAAAGTGAGGATTGAAAA+GGG 0.538274 5_4:-40160881 Msa0850590:three_prime_UTR
AAGAATGAGTTAGCCATACA+TGG 0.539849 5_4:-40162871 Msa0850590:intron
GGATTGCTGCCTGATGAACT+TGG 0.541826 5_4:-40162761 Msa0850590:CDS
GCAGCCGTAAGGCGTGCATA+GGG 0.545092 5_4:-40160815 Msa0850590:three_prime_UTR
ACAACAAAACCATTAACCTC+TGG 0.547186 5_4:-40165840 Msa0850590:five_prime_UTR
CAGAAAATATTACAGGCGAC+AGG 0.549480 5_4:+40162690 None:intergenic
AATTTGTCATCTTCGTCAAG+AGG 0.549850 5_4:-40164872 Msa0850590:CDS
TAACTATCTTCCCTTGATCC+AGG 0.552006 5_4:-40162510 Msa0850590:CDS
CATCGAGACCTCTACCACAC+AGG 0.553386 5_4:+40163004 None:intergenic
TTCTTTGTCAGCTGCTTGTG+TGG 0.553823 5_4:+40160781 None:intergenic
TTTCCAGTAGGCCATCTAAG+AGG 0.554429 5_4:+40164617 None:intergenic
TGTTTCCGGTACTCGTGTAC+CGG 0.556249 5_4:-40165164 Msa0850590:CDS
CTTTACCGAAAATCTGTGCT+GGG 0.556623 5_4:-40163203 Msa0850590:CDS
CATATGAGAGGCTGAACGAA+AGG 0.563007 5_4:+40164288 None:intergenic
TCCGAAGAGGCCCGGTGACG+AGG 0.564321 5_4:-40162663 Msa0850590:CDS
TTGTTCAAATTAGCCCGAGA+AGG 0.564574 5_4:+40162892 None:intergenic
AACCATCAAACAAAACTACT+AGG 0.567074 5_4:-40165779 Msa0850590:intron
TTAGACATGAATGCTAACTT+TGG 0.569291 5_4:-40162605 Msa0850590:CDS
GGAGAAGGGTCCTCGTCACC+GGG 0.572769 5_4:+40162653 None:intergenic
AAACCTCGGTCCTGGATCAA+GGG 0.573765 5_4:+40162500 None:intergenic
TCATAGGTTCTCGGGTATGT+CGG 0.578308 5_4:+40161992 None:intergenic
TTCAATGAACAGATCAAGCA+TGG 0.580708 5_4:+40161913 None:intergenic
CATGGTGCACCTAAGTGGCT+GGG 0.582332 5_4:+40161931 None:intergenic
ATGTGCATTGGAAATGAGAG+AGG 0.582539 5_4:+40165910 None:intergenic
TGCTACAAAGTAATAAGAGA+AGG 0.583403 5_4:+40165975 None:intergenic
CTTCTGGAAGCTTGACCAAG+AGG 0.586011 5_4:-40164544 Msa0850590:intron
GCCACAACCTATGTCTAGTA+CGG 0.587892 5_4:+40163661 None:intergenic
ACAAGGAGAATCAGAAAAGG+TGG 0.588315 5_4:-40163240 Msa0850590:CDS
ACTTACACCAGCTTGTATGA+AGG 0.590478 5_4:+40164201 None:intergenic
ACAGTGTCTGTGCTCACGAT+CGG 0.591269 5_4:-40166028 Msa0850590:five_prime_UTR
CCATCGGAAACATTAAAGCA+AGG 0.593228 5_4:+40164716 None:intergenic
ATTCGAACCGTACTAGACAT+AGG 0.593344 5_4:-40163668 Msa0850590:CDS
CCGGAAACACCTCGATGTAG+AGG 0.593760 5_4:+40165178 None:intergenic
TCAAGCATGGTGCACCTAAG+TGG 0.595533 5_4:+40161926 None:intergenic
AACATATCAAAAGACAGAGA+TGG 0.597981 5_4:+40163488 None:intergenic
GATATTGGTGAGATTTCTAG+GGG 0.598200 5_4:-40164794 Msa0850590:CDS
TGTGAAAATCACTGCACAAG+AGG 0.598848 5_4:-40164573 Msa0850590:CDS
AGGTTTAGGATAAGAGTGAA+CGG 0.600037 5_4:+40166233 None:intergenic
GAACTGCAAAACTGCATAGG+AGG 0.600256 5_4:-40162961 Msa0850590:CDS
GTAACAAGGAGAATCAGAAA+AGG 0.601806 5_4:-40163243 Msa0850590:CDS
TTGTTACGAGCATTTGTAAG+CGG 0.602642 5_4:+40163259 None:intergenic
GTCAAGAACATGAACTATGT+CGG 0.605607 5_4:+40166179 None:intergenic
GGCATTGATTGGGACCAGAA+AGG 0.607628 5_4:-40163449 Msa0850590:intron
AAATAATTCTATGATATAGG+GGG 0.607799 5_4:+40160625 None:intergenic
TTTCAATTGAAAGCCAGCGG+CGG 0.609031 5_4:+40162929 None:intergenic
GCTTACAAATGCTCGTAACA+AGG 0.610328 5_4:-40163257 Msa0850590:CDS
TGTGTGGAAAGAGTATGTCT+AGG 0.611288 5_4:-40165201 Msa0850590:exon
AAACATCAATGATGATACAT+GGG 0.612157 5_4:-40165140 Msa0850590:CDS
GGTTCTCGGGTATGTCGGAA+AGG 0.613488 5_4:+40161997 None:intergenic
TCAAGAGGTCGTGTTTACCA+TGG 0.613690 5_4:-40164857 Msa0850590:CDS
TTACGGCTGCACAGGAGAAG+CGG 0.614675 5_4:+40160828 None:intergenic
CGCGAACTGCAAAACTGCAT+AGG 0.617218 5_4:-40162964 Msa0850590:CDS
ACATGTTGTAAGGCGGAGAA+GGG 0.618483 5_4:+40162639 None:intergenic
ATCGAGACCTCTACCACACA+GGG 0.618870 5_4:+40163005 None:intergenic
TTGTGTGGCCTCTAGGTGCG+AGG 0.619318 5_4:-40162020 Msa0850590:intron
TAAGTTGTTGCTCATTGTTG+TGG 0.621756 5_4:-40160674 Msa0850590:three_prime_UTR
AAGTTCTGCCATACAAAGTG+AGG 0.624339 5_4:-40160892 Msa0850590:three_prime_UTR
GGAACTTTGTAATTAACTGG+TGG 0.627180 5_4:+40164638 None:intergenic
AGGAGACCTCAATGCTAAAG+GGG 0.629846 5_4:+40165054 None:intergenic
AACTCCATCAAACATATGAG+AGG 0.634768 5_4:+40164276 None:intergenic
ATACCCGAGAACCTATGACT+TGG 0.638261 5_4:-40161987 Msa0850590:CDS
TTTCTAGGGGTGCTTCAAGG+TGG 0.639200 5_4:-40164781 Msa0850590:CDS
AAGTGGCTGGGAAAATTCAA+GGG 0.642516 5_4:+40161943 None:intergenic
CTTCCCTTGATCCAGGACCG+AGG 0.642864 5_4:-40162503 Msa0850590:CDS
GTCCAAACAAAGTATCCACC+CGG 0.644568 5_4:+40163286 None:intergenic
GCTGCCTGATGAACTTGGTG+AGG 0.645687 5_4:-40162756 Msa0850590:CDS
CGGCTGCACAGGAGAAGCGG+TGG 0.647779 5_4:+40160831 None:intergenic
ACCGTACTAGACATAGGTTG+TGG 0.648823 5_4:-40163662 Msa0850590:CDS
AAAGGTTCTCGGCCCCTGTG+TGG 0.650412 5_4:-40163018 Msa0850590:CDS
AGCTGAACTTGACTACCAGA+AGG 0.652030 5_4:+40163572 None:intergenic
ATGACTTGGTGCATGCAGCA+GGG 0.652344 5_4:-40161973 Msa0850590:CDS
CTTGCAAAGCAAAACACCAG+AGG 0.653937 5_4:+40165824 None:intergenic
GCAAAACGCCGACAAAACCT+CGG 0.659812 5_4:+40162486 None:intergenic
GTTCAGCTTACTCTTGAGCG+AGG 0.669560 5_4:-40163557 Msa0850590:CDS
ATGTTACATTGTGCAAGATG+TGG 0.674130 5_4:-40163470 Msa0850590:CDS
TGACAGGTTACTTCGCCCAG+AGG 0.677454 5_4:-40161888 Msa0850590:intron
TTTCTGAACATGTTGTAAGG+CGG 0.677618 5_4:+40162632 None:intergenic
ACGAGCATTTGTAAGCGGTG+AGG 0.680282 5_4:+40163264 None:intergenic
GCAAGCTAGAAAGTCTGTGT+GGG 0.695074 5_4:-40162561 Msa0850590:CDS
TGCAAGCTAGAAAGTCTGTG+TGG 0.704131 5_4:-40162562 Msa0850590:CDS
ACTATGTCGGTGATGTGTCG+GGG 0.707181 5_4:+40166192 None:intergenic
GTGGTGTATAAAATGTTCAG+TGG 0.707501 5_4:-40160655 Msa0850590:three_prime_UTR
GTGTGGTAGAGGTCTCGATG+TGG 0.707920 5_4:-40163001 Msa0850590:CDS
CGAAATCGAAAGTAACAGCG+AGG 0.717535 5_4:-40161037 Msa0850590:CDS
GTCTGTGTGGGTAATGAACG+TGG 0.718175 5_4:-40162549 Msa0850590:CDS
ATGTCTAGGCCTCTACATCG+AGG 0.729495 5_4:-40165187 Msa0850590:CDS
TCGAGACCTCTACCACACAG+GGG 0.811954 5_4:+40163006 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTCTTTTCATTT+TGG - chr5_4:40161464-40161483 Msa0850590:intron 10.0%
!! AAATGAATATATGTATATTA+TGG + chr5_4:40165932-40165951 None:intergenic 10.0%
!! TAAACACAATTATTTATTAT+TGG - chr5_4:40166152-40166171 Msa0850590:five_prime_UTR 10.0%
!! AAACACAATTATTTATTATT+GGG - chr5_4:40166153-40166172 Msa0850590:five_prime_UTR 10.0%
!!! TTAAAAAAACTTTTAGTACT+AGG - chr5_4:40160778-40160797 Msa0850590:three_prime_UTR 15.0%
!! ATTGAAAACTTTAAGTATAT+GGG + chr5_4:40161248-40161267 None:intergenic 15.0%
!! AATTGAAAACTTTAAGTATA+TGG + chr5_4:40161249-40161268 None:intergenic 15.0%
!!! CTTAAAGTTTTCAATTTTTT+TGG - chr5_4:40161253-40161272 Msa0850590:intron 15.0%
!!! TTTTCAATTTTTTTGGTTTT+TGG - chr5_4:40161260-40161279 Msa0850590:intron 15.0%
!!! AAATTTTTCTTATTGCTATT+AGG - chr5_4:40164083-40164102 Msa0850590:intron 15.0%
!!! GATAGTGAATTTTTTATTTT+AGG + chr5_4:40165145-40165164 None:intergenic 15.0%
!!! CATGATATTTTATAAAAGTT+TGG + chr5_4:40165376-40165395 None:intergenic 15.0%
!! TTTATGATAATTATGGAAAT+TGG + chr5_4:40165955-40165974 None:intergenic 15.0%
!!! AATTGTTTAGTTTGATCTAA+TGG + chr5_4:40160735-40160754 None:intergenic 20.0%
!! AAAATCACTATTCAATTCAA+TGG + chr5_4:40161168-40161187 None:intergenic 20.0%
!!! TTTTTGGTTTTTGGTTATAA+TGG - chr5_4:40161269-40161288 Msa0850590:intron 20.0%
!! ATATATATCCATTTCATTAC+TGG - chr5_4:40161298-40161317 Msa0850590:intron 20.0%
!! TATATATCCATTTCATTACT+GGG - chr5_4:40161299-40161318 Msa0850590:intron 20.0%
!!! AAAACTTTTTCTTCTGAAAA+GGG + chr5_4:40161396-40161415 None:intergenic 20.0%
!!! AAAGATTAAATTTTTCTGTG+TGG - chr5_4:40161648-40161667 Msa0850590:intron 20.0%
!!! ATCTTTTTCTGATTTATCTT+TGG + chr5_4:40161760-40161779 None:intergenic 20.0%
!!! AAAAAGATGATTTTGATAGA+AGG - chr5_4:40161772-40161791 Msa0850590:intron 20.0%
!!! AAAAGATGATTTTGATAGAA+GGG - chr5_4:40161773-40161792 Msa0850590:intron 20.0%
!! AAAACATCATCAACTTAAAA+CGG + chr5_4:40161908-40161927 None:intergenic 20.0%
!!! TTTTAAGTTGATGATGTTTT+TGG - chr5_4:40161908-40161927 Msa0850590:CDS 20.0%
!! TATGTGATCTTTATTGAAAT+TGG - chr5_4:40162692-40162711 Msa0850590:CDS 20.0%
!!! TTGCGTTAATTTTTTTTTTC+CGG - chr5_4:40162730-40162749 Msa0850590:CDS 20.0%
!! TATCAATCAAACAACATTTA+AGG + chr5_4:40163152-40163171 None:intergenic 20.0%
!!! GGATCTAAATTTTTTTTATC+TGG - chr5_4:40163451-40163470 Msa0850590:CDS 20.0%
!! AAAAGAATTGTTATACATCA+AGG - chr5_4:40163733-40163752 Msa0850590:intron 20.0%
!!! TTCCACAATCTTTTAAATAT+TGG - chr5_4:40164473-40164492 Msa0850590:intron 20.0%
!! TAATGTCAATTTCTTGATTA+TGG - chr5_4:40164555-40164574 Msa0850590:CDS 20.0%
!!! CTATTATAATCATTTTTGTG+TGG - chr5_4:40164830-40164849 Msa0850590:CDS 20.0%
!! TATTAAATTTACATACCTCT+GGG + chr5_4:40164995-40165014 None:intergenic 20.0%
!! TTATTAAATTTACATACCTC+TGG + chr5_4:40164996-40165015 None:intergenic 20.0%
!! CAATTTGTATTTCAAATTGT+AGG - chr5_4:40165073-40165092 Msa0850590:CDS 20.0%
!!! CTTCTGAAGTTTTTTATTTT+AGG - chr5_4:40165255-40165274 Msa0850590:five_prime_UTR 20.0%
!!! ACTAACATGAAATTTTATAG+GGG + chr5_4:40165298-40165317 None:intergenic 20.0%
!!! GACTAACATGAAATTTTATA+GGG + chr5_4:40165299-40165318 None:intergenic 20.0%
!!! AGACTAACATGAAATTTTAT+AGG + chr5_4:40165300-40165319 None:intergenic 20.0%
!! ATAAAAGTTTGGTAAAAGTA+AGG + chr5_4:40165365-40165384 None:intergenic 20.0%
!! ACATTAGATATCTAATTTCA+GGG + chr5_4:40165511-40165530 None:intergenic 20.0%
!! TTAGATATCTAATGTCTATT+TGG - chr5_4:40165516-40165535 Msa0850590:intron 20.0%
!!! TTACTCTTGATTTTATCATT+TGG - chr5_4:40165681-40165700 Msa0850590:intron 20.0%
!! TATTATGGTATAGTTTCTTT+AGG + chr5_4:40165917-40165936 None:intergenic 20.0%
!! AAATAATTCTATGATATAGG+GGG + chr5_4:40166243-40166262 None:intergenic 20.0%
! AAAACTTTAAGTATATGGGT+TGG + chr5_4:40161244-40161263 None:intergenic 25.0%
!!! CAAAACTTTTTCTTCTGAAA+AGG + chr5_4:40161397-40161416 None:intergenic 25.0%
! AAAACATCAATGATGATACA+TGG - chr5_4:40161724-40161743 Msa0850590:intron 25.0%
! AAACATCAATGATGATACAT+GGG - chr5_4:40161725-40161744 Msa0850590:intron 25.0%
!!! AAAGATGATTTTGATAGAAG+GGG - chr5_4:40161774-40161793 Msa0850590:intron 25.0%
!! TTGTTTTCAGATAAAGAGAA+TGG - chr5_4:40161843-40161862 Msa0850590:intron 25.0%
!! TACTGGAAAAGATGTTATTT+GGG - chr5_4:40162262-40162281 Msa0850590:intron 25.0%
!!! TTTTTTTTCCTTTCAATTGC+AGG - chr5_4:40162526-40162545 Msa0850590:CDS 25.0%
! TACGTGAAGTATAAATACAA+CGG + chr5_4:40162766-40162785 None:intergenic 25.0%
! GTATTTATACTTCACGTATT+TGG - chr5_4:40162768-40162787 Msa0850590:intron 25.0%
!!! TTTTGACTTCTGATAGATTT+TGG - chr5_4:40163080-40163099 Msa0850590:intron 25.0%
!! ATCAAACAACATTTAAGGTA+AGG + chr5_4:40163147-40163166 None:intergenic 25.0%
! GATTTAACACAGCAAAATTA+TGG + chr5_4:40163485-40163504 None:intergenic 25.0%
! ACAGGTAATACTAAGAATTA+GGG + chr5_4:40163811-40163830 None:intergenic 25.0%
! AACAGGTAATACTAAGAATT+AGG + chr5_4:40163812-40163831 None:intergenic 25.0%
!! TTCTTTCTGGAAATAAAAAC+AGG + chr5_4:40163829-40163848 None:intergenic 25.0%
!!! GTTTTTATTTCCAGAAAGAA+AGG - chr5_4:40163829-40163848 Msa0850590:intron 25.0%
! CAATTGAAAAAAGGGAAAAA+TGG - chr5_4:40163950-40163969 Msa0850590:intron 25.0%
! TACATAACAATTACCATGTA+TGG + chr5_4:40164010-40164029 None:intergenic 25.0%
! GACCAATATTTAAAAGATTG+TGG + chr5_4:40164478-40164497 None:intergenic 25.0%
! CTCAAAAAACTAAGCTATAA+AGG + chr5_4:40164526-40164545 None:intergenic 25.0%
!!! CTTTATAGCTTAGTTTTTTG+AGG - chr5_4:40164524-40164543 Msa0850590:intron 25.0%
!!! CAGAATATTAGTTTTACACA+TGG + chr5_4:40164598-40164617 None:intergenic 25.0%
! GCTTGCAAAATATTTAAACT+TGG - chr5_4:40164719-40164738 Msa0850590:CDS 25.0%
!!! TTTATTTTTCCACTTACCTT+TGG - chr5_4:40164753-40164772 Msa0850590:CDS 25.0%
!!! TATTTCACTCTAAAACCAAA+TGG + chr5_4:40165052-40165071 None:intergenic 25.0%
!!! ACTATCACATCAGATTTTTT+GGG - chr5_4:40165159-40165178 Msa0850590:CDS 25.0%
! GACATTAGATATCTAATTTC+AGG + chr5_4:40165512-40165531 None:intergenic 25.0%
!!! AAATTTGTTAAGTGTAAGGA+AGG + chr5_4:40165543-40165562 None:intergenic 25.0%
!!! TCGAAAATTTGTTAAGTGTA+AGG + chr5_4:40165547-40165566 None:intergenic 25.0%
! AGTTTGTCAAATAAATCTCA+TGG + chr5_4:40165570-40165589 None:intergenic 25.0%
!! TCTTGATTTTATCATTTGGA+AGG - chr5_4:40165685-40165704 Msa0850590:intron 25.0%
! GCAGAACTTTATGATAATTA+TGG + chr5_4:40165962-40165981 None:intergenic 25.0%
TGCTACAAAGTAATAAGAGA+AGG + chr5_4:40160893-40160912 None:intergenic 30.0%
AATGAGAGAGGAAAAAATGA+GGG + chr5_4:40160946-40160965 None:intergenic 30.0%
AAATGAGAGAGGAAAAAATG+AGG + chr5_4:40160947-40160966 None:intergenic 30.0%
AACCATCAAACAAAACTACT+AGG - chr5_4:40161086-40161105 Msa0850590:CDS 30.0%
!!! TACCTAGTAGTTTTGTTTGA+TGG + chr5_4:40161091-40161110 None:intergenic 30.0%
AGTAAACAACACTCTTGTAT+TGG - chr5_4:40161565-40161584 Msa0850590:intron 30.0%
! GTATCATCATTGATGTTTTC+CGG + chr5_4:40161723-40161742 None:intergenic 30.0%
TCTGAAAACAACAACTTCAA+AGG + chr5_4:40161834-40161853 None:intergenic 30.0%
!!! ATAGTTGTTTTTGCTCTTGT+TGG - chr5_4:40161951-40161970 Msa0850590:CDS 30.0%
! GAAACTTGTTTCAGATTTGT+TGG - chr5_4:40162049-40162068 Msa0850590:intron 30.0%
!! GTTTCAGATTTGTTGGATAT+TGG - chr5_4:40162056-40162075 Msa0850590:intron 30.0%
AGAGGAACTTTGTAATTAAC+TGG + chr5_4:40162233-40162252 None:intergenic 30.0%
ATTACAAAGTTCCTCTTAGA+TGG - chr5_4:40162237-40162256 Msa0850590:intron 30.0%
! CAAATAACATCTTTTCCAGT+AGG + chr5_4:40162263-40162282 None:intergenic 30.0%
CTACTGGAAAAGATGTTATT+TGG - chr5_4:40162261-40162280 Msa0850590:intron 30.0%
CACATATTCCAGTAATATAC+AGG + chr5_4:40162404-40162423 None:intergenic 30.0%
CTGTATATTACTGGAATATG+TGG - chr5_4:40162402-40162421 Msa0850590:intron 30.0%
!!! CGTTAATTTTTTTTTTCCGG+TGG - chr5_4:40162733-40162752 Msa0850590:CDS 30.0%
!!! TTTTAGCTTGTACTTTGTTC+AGG - chr5_4:40163020-40163039 Msa0850590:CDS 30.0%
TCAAAATTTGACTGTCAAAG+AGG + chr5_4:40163250-40163269 None:intergenic 30.0%
AACATATCAAAAGACAGAGA+TGG + chr5_4:40163380-40163399 None:intergenic 30.0%
TAATTGACAACCACATTATG+TGG - chr5_4:40163513-40163532 Msa0850590:CDS 30.0%
ATAAGTACATCATGTAAAGC+AGG + chr5_4:40163763-40163782 None:intergenic 30.0%
!!! TTTTTTCAATTGAAAGCCAG+CGG + chr5_4:40163942-40163961 None:intergenic 30.0%
! CTGGCTTTCAATTGAAAAAA+GGG - chr5_4:40163942-40163961 Msa0850590:intron 30.0%
GGATGATCAGAAAATATTAC+AGG + chr5_4:40164185-40164204 None:intergenic 30.0%
ACATTTCTGAACATGTTGTA+AGG + chr5_4:40164239-40164258 None:intergenic 30.0%
TTAGACATGAATGCTAACTT+TGG - chr5_4:40164260-40164279 Msa0850590:CDS 30.0%
AGTAAATTTAGTACATGCCA+GGG + chr5_4:40164449-40164468 None:intergenic 30.0%
AAGTAAATTTAGTACATGCC+AGG + chr5_4:40164450-40164469 None:intergenic 30.0%
ATCTGTTCATTGAAATTGAC+AGG - chr5_4:40164961-40164980 Msa0850590:CDS 30.0%
!!! CACTATCACATCAGATTTTT+TGG - chr5_4:40165158-40165177 Msa0850590:CDS 30.0%
! TCTAGATCAAATTAGTCTCT+TGG + chr5_4:40165213-40165232 None:intergenic 30.0%
! TCATGTTAGTCTCTTAGAAT+TGG - chr5_4:40165308-40165327 Msa0850590:five_prime_UTR 30.0%
TAAAAGTAAGGAACCAAGTT+GGG + chr5_4:40165353-40165372 None:intergenic 30.0%
!!! TGAACTTTTTTGCTAAGTGA+GGG + chr5_4:40165404-40165423 None:intergenic 30.0%
!!! ATGAACTTTTTTGCTAAGTG+AGG + chr5_4:40165405-40165424 None:intergenic 30.0%
CTTTCTGATAACATAACAGA+GGG + chr5_4:40165437-40165456 None:intergenic 30.0%
ACTTTCTGATAACATAACAG+AGG + chr5_4:40165438-40165457 None:intergenic 30.0%
! ACAAACTTTCTGAAAAGTGA+GGG - chr5_4:40165583-40165602 Msa0850590:intron 30.0%
! ACTCTAGCTGATTCTATTAA+AGG + chr5_4:40165772-40165791 None:intergenic 30.0%
ATTGCATGTTTCTTGAAGAA+AGG + chr5_4:40165877-40165896 None:intergenic 30.0%
! TTTTCAATCCTCACTTTGTA+TGG + chr5_4:40165984-40166003 None:intergenic 30.0%
ATACAAAGTGAGGATTGAAA+AGG - chr5_4:40165983-40166002 Msa0850590:five_prime_UTR 30.0%
TACAAAGTGAGGATTGAAAA+GGG - chr5_4:40165984-40166003 Msa0850590:five_prime_UTR 30.0%
GGAAGAAGAAAAAACAATAG+AGG - chr5_4:40166005-40166024 Msa0850590:five_prime_UTR 30.0%
! AGGTTTAGGATAAGAGTGAA+CGG + chr5_4:40160635-40160654 None:intergenic 35.0%
!!! GGTTTTAAGTGCTTAGGTTT+AGG + chr5_4:40160649-40160668 None:intergenic 35.0%
GTCAAGAACATGAACTATGT+CGG + chr5_4:40160689-40160708 None:intergenic 35.0%
GTCGAATGATTAATGTGCAT+TGG + chr5_4:40160970-40160989 None:intergenic 35.0%
ACAACAAAACCATTAACCTC+TGG - chr5_4:40161025-40161044 Msa0850590:CDS 35.0%
TCCGTGATTTATATCAGATG+CGG - chr5_4:40161322-40161341 Msa0850590:intron 35.0%
ACCGCATCTGATATAAATCA+CGG + chr5_4:40161326-40161345 None:intergenic 35.0%
GAAAAGGGAATCAAAAACAG+AGG + chr5_4:40161381-40161400 None:intergenic 35.0%
TAGACTTGTGATTCTTCAAC+TGG - chr5_4:40161492-40161511 Msa0850590:intron 35.0%
ATCAACTTAAAACGGCTTCT+TGG + chr5_4:40161900-40161919 None:intergenic 35.0%
!!! CTCTTGTTGGATCTTTTTTG+TGG - chr5_4:40161964-40161983 Msa0850590:CDS 35.0%
AATTTGTCATCTTCGTCAAG+AGG - chr5_4:40161993-40162012 Msa0850590:CDS 35.0%
TGGATATTGGTGAGATTTCT+AGG - chr5_4:40162069-40162088 Msa0850590:intron 35.0%
GGATATTGGTGAGATTTCTA+GGG - chr5_4:40162070-40162089 Msa0850590:intron 35.0%
! GATATTGGTGAGATTTCTAG+GGG - chr5_4:40162071-40162090 Msa0850590:intron 35.0%
! GGAACAAAATTTTCCAACTC+AGG + chr5_4:40162131-40162150 None:intergenic 35.0%
CCTTTCAAACTCATTTCCAT+CGG + chr5_4:40162168-40162187 None:intergenic 35.0%
TGAGCAGAGTCAAAATTGTT+TGG - chr5_4:40162199-40162218 Msa0850590:intron 35.0%
GGAACTTTGTAATTAACTGG+TGG + chr5_4:40162230-40162249 None:intergenic 35.0%
GTAACTTCATAACTGCGTTA+CGG - chr5_4:40162372-40162391 Msa0850590:intron 35.0%
TAACTTCATAACTGCGTTAC+GGG - chr5_4:40162373-40162392 Msa0850590:intron 35.0%
ATCATCATCCTGCAATTGAA+AGG + chr5_4:40162537-40162556 None:intergenic 35.0%
AACTCCATCAAACATATGAG+AGG + chr5_4:40162592-40162611 None:intergenic 35.0%
CATCAGATTGCTGAAATGAT+TGG - chr5_4:40162624-40162643 Msa0850590:CDS 35.0%
ATGTTGGGTTCAACGTATAT+AGG - chr5_4:40162801-40162820 Msa0850590:intron 35.0%
TGTTGGGTTCAACGTATATA+GGG - chr5_4:40162802-40162821 Msa0850590:intron 35.0%
TCAAAAGACAGAGATGGATA+TGG + chr5_4:40163374-40163393 None:intergenic 35.0%
ATGTTACATTGTGCAAGATG+TGG - chr5_4:40163395-40163414 Msa0850590:intron 35.0%
CCTAAACTCAAATACCTTTC+TGG + chr5_4:40163433-40163452 None:intergenic 35.0%
!! CCAGAAAGGTATTTGAGTTT+AGG - chr5_4:40163430-40163449 Msa0850590:intron 35.0%
ACCACATTATGTGGAATAGA+TGG - chr5_4:40163522-40163541 Msa0850590:CDS 35.0%
!!! AGCTGATAGACTTTTAAGAC+CGG - chr5_4:40163560-40163579 Msa0850590:CDS 35.0%
TTGTTACGAGCATTTGTAAG+CGG + chr5_4:40163609-40163628 None:intergenic 35.0%
GTAACAAGGAGAATCAGAAA+AGG - chr5_4:40163622-40163641 Msa0850590:CDS 35.0%
TTTCCAGAAAGAAAGGTTCT+CGG - chr5_4:40163836-40163855 Msa0850590:intron 35.0%
! TTTTGCAGTTCGCGATAATA+TGG + chr5_4:40163895-40163914 None:intergenic 35.0%
!! GCTGGCTTTCAATTGAAAAA+AGG - chr5_4:40163941-40163960 Msa0850590:intron 35.0%
AAGAATGAGTTAGCCATACA+TGG - chr5_4:40163994-40164013 Msa0850590:intron 35.0%
AAGCAGCAGTGCAAAATTAT+TGG - chr5_4:40164147-40164166 Msa0850590:intron 35.0%
! TATTTTCTGATCATCCGAAG+AGG - chr5_4:40164189-40164208 Msa0850590:intron 35.0%
TTTCTGAACATGTTGTAAGG+CGG + chr5_4:40164236-40164255 None:intergenic 35.0%
TTCAATGAACAGATCAAGCA+TGG + chr5_4:40164955-40164974 None:intergenic 35.0%
CTAAAACCAAATGGAAGGAA+AGG + chr5_4:40165043-40165062 None:intergenic 35.0%
!! TCACTCTAAAACCAAATGGA+AGG + chr5_4:40165048-40165067 None:intergenic 35.0%
! AGTCTCTTGGACACAATTTT+AGG + chr5_4:40165200-40165219 None:intergenic 35.0%
! TGTTAGTCTCTTAGAATTGG+TGG - chr5_4:40165311-40165330 Msa0850590:five_prime_UTR 35.0%
GTAAAAGTAAGGAACCAAGT+TGG + chr5_4:40165354-40165373 None:intergenic 35.0%
!!! GAACTTTTTTGCTAAGTGAG+GGG + chr5_4:40165403-40165422 None:intergenic 35.0%
GAAAGTTTGTCATGTCAGAT+TGG - chr5_4:40165452-40165471 Msa0850590:intron 35.0%
! GACAAACTTTCTGAAAAGTG+AGG - chr5_4:40165582-40165601 Msa0850590:intron 35.0%
GTTTCTTGAAGAAAGGTTTC+TGG + chr5_4:40165870-40165889 None:intergenic 35.0%
AAGCAGCTGACAAAGAATAT+TGG - chr5_4:40166090-40166109 Msa0850590:five_prime_UTR 35.0%
TAAGTTGTTGCTCATTGTTG+TGG - chr5_4:40166191-40166210 Msa0850590:five_prime_UTR 35.0%
GTGGTGTATAAAATGTTCAG+TGG - chr5_4:40166210-40166229 Msa0850590:five_prime_UTR 35.0%
!!! GGTCAAGGTTTTAAGTGCTT+AGG + chr5_4:40160655-40160674 None:intergenic 40.0%
ATGTGCATTGGAAATGAGAG+AGG + chr5_4:40160958-40160977 None:intergenic 40.0%
AGCAAAACACCAGAGGTTAA+TGG + chr5_4:40161037-40161056 None:intergenic 40.0%
TGGAGCTGGATTCTCAAAAA+GGG - chr5_4:40161512-40161531 Msa0850590:intron 40.0%
! TGTGTGGAAAGAGTATGTCT+AGG - chr5_4:40161664-40161683 Msa0850590:intron 40.0%
AAGGAGACCTCAATGCTAAA+GGG + chr5_4:40161815-40161834 None:intergenic 40.0%
AAAGGAGACCTCAATGCTAA+AGG + chr5_4:40161816-40161835 None:intergenic 40.0%
GTCGTGTTTACCATGGTTAT+AGG - chr5_4:40162015-40162034 Msa0850590:intron 40.0%
CTTGAAGTCTCCTATAACCA+TGG + chr5_4:40162028-40162047 None:intergenic 40.0%
TGCTTCAAGGTGGAAAGAAT+TGG - chr5_4:40162094-40162113 Msa0850590:intron 40.0%
CCATCGGAAACATTAAAGCA+AGG + chr5_4:40162152-40162171 None:intergenic 40.0%
CCTTGCTTTAATGTTTCCGA+TGG - chr5_4:40162149-40162168 Msa0850590:intron 40.0%
CCGATGGAAATGAGTTTGAA+AGG - chr5_4:40162165-40162184 Msa0850590:intron 40.0%
TGTGAAAATCACTGCACAAG+AGG - chr5_4:40162292-40162311 Msa0850590:intron 40.0%
GACACATGTTAGTTACCTCT+TGG + chr5_4:40162339-40162358 None:intergenic 40.0%
AACTTCATAACTGCGTTACG+GGG - chr5_4:40162374-40162393 Msa0850590:intron 40.0%
AATATCCGCAACCGTAATTG+CGG + chr5_4:40162470-40162489 None:intergenic 40.0%
! CAATTGCAGGATGATGATGT+TGG - chr5_4:40162539-40162558 Msa0850590:CDS 40.0%
TCAGCCTCTCATATGTTTGA+TGG - chr5_4:40162585-40162604 Msa0850590:CDS 40.0%
GAATCTTCCTTCATACAAGC+TGG - chr5_4:40162657-40162676 Msa0850590:CDS 40.0%
ACTTACACCAGCTTGTATGA+AGG + chr5_4:40162667-40162686 None:intergenic 40.0%
ATACAACGGATAAAGACCAC+CGG + chr5_4:40162752-40162771 None:intergenic 40.0%
TTCACGTATTTGGTACACAC+TGG - chr5_4:40162778-40162797 Msa0850590:intron 40.0%
ATTTGGTACACACTGGATGT+TGG - chr5_4:40162785-40162804 Msa0850590:intron 40.0%
TTTGGTACACACTGGATGTT+GGG - chr5_4:40162786-40162805 Msa0850590:intron 40.0%
GTTGGGTTCAACGTATATAG+GGG - chr5_4:40162803-40162822 Msa0850590:intron 40.0%
TTGGGTTCAACGTATATAGG+GGG - chr5_4:40162804-40162823 Msa0850590:intron 40.0%
TAGTAGTCGCAGTTACAGTT+TGG - chr5_4:40162847-40162866 Msa0850590:intron 40.0%
CATCAAAAACCGTCATGTCT+TGG - chr5_4:40162930-40162949 Msa0850590:CDS 40.0%
CAATATGGACCAAGACATGA+CGG + chr5_4:40162942-40162961 None:intergenic 40.0%
TCATGTCTTGGTCCATATTG+TGG - chr5_4:40162942-40162961 Msa0850590:CDS 40.0%
AGTGTTTGCCAACCACAATA+TGG + chr5_4:40162957-40162976 None:intergenic 40.0%
GGTTCGAATCTGGAAATTTC+AGG + chr5_4:40163186-40163205 None:intergenic 40.0%
ATTCGAACCGTACTAGACAT+AGG - chr5_4:40163197-40163216 Msa0850590:CDS 40.0%
ATTGCAAACTATGAGCCTTC+TGG - chr5_4:40163278-40163297 Msa0850590:CDS 40.0%
GTGAAAGAAGCAATCATAGC+AGG + chr5_4:40163338-40163357 None:intergenic 40.0%
!! TGCAAGATGTGGCATTGATT+GGG - chr5_4:40163406-40163425 Msa0850590:intron 40.0%
GCCATCTATTCCACATAATG+TGG + chr5_4:40163526-40163545 None:intergenic 40.0%
!!! GCTGATAGACTTTTAAGACC+GGG - chr5_4:40163561-40163580 Msa0850590:CDS 40.0%
GCTTACAAATGCTCGTAACA+AGG - chr5_4:40163608-40163627 Msa0850590:CDS 40.0%
ACAAGGAGAATCAGAAAAGG+TGG - chr5_4:40163625-40163644 Msa0850590:CDS 40.0%
ACTTTACCGAAAATCTGTGC+TGG - chr5_4:40163661-40163680 Msa0850590:CDS 40.0%
CTTTACCGAAAATCTGTGCT+GGG - chr5_4:40163662-40163681 Msa0850590:CDS 40.0%
AAAGGGAAAAATGGCCTTCT+CGG - chr5_4:40163959-40163978 Msa0850590:intron 40.0%
TTGTTCAAATTAGCCCGAGA+AGG + chr5_4:40163976-40163995 None:intergenic 40.0%
CAGAAAATATTACAGGCGAC+AGG + chr5_4:40164178-40164197 None:intergenic 40.0%
GACATGAATGCTAACTTTGG+TGG - chr5_4:40164263-40164282 Msa0850590:CDS 40.0%
GATAGTTAGGTCCAGTTCTT+GGG + chr5_4:40164343-40164362 None:intergenic 40.0%
AGATAGTTAGGTCCAGTTCT+TGG + chr5_4:40164344-40164363 None:intergenic 40.0%
TGGATCAAGGGAAGATAGTT+AGG + chr5_4:40164356-40164375 None:intergenic 40.0%
TAACTATCTTCCCTTGATCC+AGG - chr5_4:40164355-40164374 Msa0850590:intron 40.0%
TCCTTCCTCTTGTCCTTATA+TGG - chr5_4:40164420-40164439 Msa0850590:intron 40.0%
TCCATATAAGGACAAGAGGA+AGG + chr5_4:40164424-40164443 None:intergenic 40.0%
GGAATCCATATAAGGACAAG+AGG + chr5_4:40164428-40164447 None:intergenic 40.0%
TTGTCCTTATATGGATTCCC+TGG - chr5_4:40164429-40164448 Msa0850590:intron 40.0%
CCATGACTCTGTATGAAGTA+GGG + chr5_4:40164500-40164519 None:intergenic 40.0%
ACCATGACTCTGTATGAAGT+AGG + chr5_4:40164501-40164520 None:intergenic 40.0%
!! ATCATTTTTGTGTGGCCTCT+AGG - chr5_4:40164838-40164857 Msa0850590:CDS 40.0%
AAGTGGCTGGGAAAATTCAA+GGG + chr5_4:40164925-40164944 None:intergenic 40.0%
TAAGTGGCTGGGAAAATTCA+AGG + chr5_4:40164926-40164945 None:intergenic 40.0%
! TTGAATTTTCCCAGCCACTT+AGG - chr5_4:40164925-40164944 Msa0850590:CDS 40.0%
TCCATTCCTTTCCTTCCATT+TGG - chr5_4:40165034-40165053 Msa0850590:CDS 40.0%
ACCAAATGGAAGGAAAGGAA+TGG + chr5_4:40165038-40165057 None:intergenic 40.0%
ACTCTATGAATTGCCCAACT+TGG - chr5_4:40165337-40165356 Msa0850590:five_prime_UTR 40.0%
!! TTACTCAGGGAGTATCAAGT+TGG - chr5_4:40165484-40165503 Msa0850590:intron 40.0%
TTTGCCAGCATGTGTCAATT+TGG + chr5_4:40165640-40165659 None:intergenic 40.0%
! TGTTGTTTGTCATGTGTGCA+GGG - chr5_4:40165721-40165740 Msa0850590:intron 40.0%
!! AGAAAGGTTTCTGGCATATC+AGG + chr5_4:40165861-40165880 None:intergenic 40.0%
AAGTTCTGCCATACAAAGTG+AGG - chr5_4:40165973-40165992 Msa0850590:five_prime_UTR 40.0%
AACTATGTCGGTGATGTGTC+GGG + chr5_4:40160677-40160696 None:intergenic 45.0%
GAACTATGTCGGTGATGTGT+CGG + chr5_4:40160678-40160697 None:intergenic 45.0%
CTTGCAAAGCAAAACACCAG+AGG + chr5_4:40161044-40161063 None:intergenic 45.0%
TCACGGACCCAGTAATGAAA+TGG + chr5_4:40161309-40161328 None:intergenic 45.0%
TGTGATTCTTCAACTGGAGC+TGG - chr5_4:40161498-40161517 Msa0850590:intron 45.0%
CTGGAGCTGGATTCTCAAAA+AGG - chr5_4:40161511-40161530 Msa0850590:intron 45.0%
ATCACACCCCTTTAGCATTG+AGG - chr5_4:40161805-40161824 Msa0850590:intron 45.0%
AGGAGACCTCAATGCTAAAG+GGG + chr5_4:40161814-40161833 None:intergenic 45.0%
GCATCTGATCCAATCAGTGT+TGG - chr5_4:40161870-40161889 Msa0850590:intron 45.0%
TCAAGAGGTCGTGTTTACCA+TGG - chr5_4:40162008-40162027 Msa0850590:CDS 45.0%
!! AGATTTCTAGGGGTGCTTCA+AGG - chr5_4:40162081-40162100 Msa0850590:intron 45.0%
GGAATCTTGTTCTCCTGAGT+TGG - chr5_4:40162115-40162134 Msa0850590:intron 45.0%
TTTCCAGTAGGCCATCTAAG+AGG + chr5_4:40162251-40162270 None:intergenic 45.0%
GCACAAGAGGTTCTTTCTTC+TGG - chr5_4:40162305-40162324 Msa0850590:intron 45.0%
GGGGAGAACCTGTATATTAC+TGG - chr5_4:40162393-40162412 Msa0850590:intron 45.0%
GTTGCCAATACCCGCAATTA+CGG - chr5_4:40162456-40162475 Msa0850590:intron 45.0%
AATACCCGCAATTACGGTTG+CGG - chr5_4:40162462-40162481 Msa0850590:intron 45.0%
ATATCCGCAACCGTAATTGC+GGG + chr5_4:40162469-40162488 None:intergenic 45.0%
CATATGAGAGGCTGAACGAA+AGG + chr5_4:40162580-40162599 None:intergenic 45.0%
TGGGTTCAACGTATATAGGG+GGG - chr5_4:40162805-40162824 Msa0850590:intron 45.0%
! AACTCAATCGCTGTTGCTTG+CGG - chr5_4:40162898-40162917 Msa0850590:CDS 45.0%
GTCTTGGTCCATATTGTGGT+TGG - chr5_4:40162946-40162965 Msa0850590:CDS 45.0%
TGTCTAGTACGGTTCGAATC+TGG + chr5_4:40163196-40163215 None:intergenic 45.0%
ACCGTACTAGACATAGGTTG+TGG - chr5_4:40163203-40163222 Msa0850590:CDS 45.0%
GCCACAACCTATGTCTAGTA+CGG + chr5_4:40163207-40163226 None:intergenic 45.0%
CTAGACATAGGTTGTGGCTA+TGG - chr5_4:40163209-40163228 Msa0850590:CDS 45.0%
AGCTGAACTTGACTACCAGA+AGG + chr5_4:40163296-40163315 None:intergenic 45.0%
!! GTGCAAGATGTGGCATTGAT+TGG - chr5_4:40163405-40163424 Msa0850590:intron 45.0%
!!! GATAGACTTTTAAGACCGGG+TGG - chr5_4:40163564-40163583 Msa0850590:CDS 45.0%
! GTCCAAACAAAGTATCCACC+CGG + chr5_4:40163582-40163601 None:intergenic 45.0%
! CATGTCCCAGCACAGATTTT+CGG + chr5_4:40163670-40163689 None:intergenic 45.0%
GAACTGCAAAACTGCATAGG+AGG - chr5_4:40163904-40163923 Msa0850590:intron 45.0%
TTTCAATTGAAAGCCAGCGG+CGG + chr5_4:40163939-40163958 None:intergenic 45.0%
AAGGGAAAAATGGCCTTCTC+GGG - chr5_4:40163960-40163979 Msa0850590:intron 45.0%
ACATGTTGTAAGGCGGAGAA+GGG + chr5_4:40164229-40164248 None:intergenic 45.0%
AACATGTTGTAAGGCGGAGA+AGG + chr5_4:40164230-40164249 None:intergenic 45.0%
TGCAAGCTAGAAAGTCTGTG+TGG - chr5_4:40164303-40164322 Msa0850590:CDS 45.0%
GCAAGCTAGAAAGTCTGTGT+GGG - chr5_4:40164304-40164323 Msa0850590:CDS 45.0%
! TTGTCGGCGTTTTGCATGAT+TGG - chr5_4:40164387-40164406 Msa0850590:intron 45.0%
CATGCCAGGGAATCCATATA+AGG + chr5_4:40164436-40164455 None:intergenic 45.0%
CCCTACTTCATACAGAGTCA+TGG - chr5_4:40164497-40164516 Msa0850590:intron 45.0%
TCATAGGTTCTCGGGTATGT+CGG + chr5_4:40164876-40164895 None:intergenic 45.0%
ATACCCGAGAACCTATGACT+TGG - chr5_4:40164878-40164897 Msa0850590:CDS 45.0%
TGCACCAAGTCATAGGTTCT+CGG + chr5_4:40164885-40164904 None:intergenic 45.0%
ATACTCCCTGAGTAACTCCA+GGG + chr5_4:40165479-40165498 None:intergenic 45.0%
GGCAAAGTGAGGGACTAATT+TGG - chr5_4:40165654-40165673 Msa0850590:intron 45.0%
! CTGTTGTTTGTCATGTGTGC+AGG - chr5_4:40165720-40165739 Msa0850590:intron 45.0%
TCTTGCTTCCCATTTCAGCT+GGG + chr5_4:40165803-40165822 None:intergenic 45.0%
CGAAATCGAAAGTAACAGCG+AGG - chr5_4:40165828-40165847 Msa0850590:five_prime_UTR 45.0%
TTCTTTGTCAGCTGCTTGTG+TGG + chr5_4:40166087-40166106 None:intergenic 45.0%
ACTATGTCGGTGATGTGTCG+GGG + chr5_4:40160676-40160695 None:intergenic 50.0%
ACAGTGTCTGTGCTCACGAT+CGG - chr5_4:40160837-40160856 Msa0850590:three_prime_UTR 50.0%
ATGTCTAGGCCTCTACATCG+AGG - chr5_4:40161678-40161697 Msa0850590:intron 50.0%
! CCTCTACATCGAGGTGTTTC+CGG - chr5_4:40161687-40161706 Msa0850590:intron 50.0%
TGTTTCCGGTACTCGTGTAC+CGG - chr5_4:40161701-40161720 Msa0850590:intron 50.0%
! GTTTTCCGGTACACGAGTAC+CGG + chr5_4:40161709-40161728 None:intergenic 50.0%
CTTGGTGAGCCAACACTGAT+TGG + chr5_4:40161882-40161901 None:intergenic 50.0%
!! TTTCTAGGGGTGCTTCAAGG+TGG - chr5_4:40162084-40162103 Msa0850590:intron 50.0%
GTTCCTCTTAGATGGCCTAC+TGG - chr5_4:40162245-40162264 Msa0850590:intron 50.0%
! CTTCTGGAAGCTTGACCAAG+AGG - chr5_4:40162321-40162340 Msa0850590:intron 50.0%
CTGGAATATGTGGCTGATGC+TGG - chr5_4:40162412-40162431 Msa0850590:intron 50.0%
GCAACCGTAATTGCGGGTAT+TGG + chr5_4:40162463-40162482 None:intergenic 50.0%
GGGTTCAACGTATATAGGGG+GGG - chr5_4:40162806-40162825 Msa0850590:intron 50.0%
! ATCGCTGTTGCTTGCGGTTT+CGG - chr5_4:40162904-40162923 Msa0850590:CDS 50.0%
GGTTGTGGCTATGGTAGCTT+TGG - chr5_4:40163218-40163237 Msa0850590:CDS 50.0%
GTTCAGCTTACTCTTGAGCG+AGG - chr5_4:40163308-40163327 Msa0850590:CDS 50.0%
!! GGCATTGATTGGGACCAGAA+AGG - chr5_4:40163416-40163435 Msa0850590:intron 50.0%
GACCGGGTGGATACTTTGTT+TGG - chr5_4:40163577-40163596 Msa0850590:CDS 50.0%
ACGAGCATTTGTAAGCGGTG+AGG + chr5_4:40163604-40163623 None:intergenic 50.0%
ATCGAGACCTCTACCACACA+GGG + chr5_4:40163863-40163882 None:intergenic 50.0%
CGCGAACTGCAAAACTGCAT+AGG - chr5_4:40163901-40163920 Msa0850590:intron 50.0%
TTCAATTGAAAGCCAGCGGC+GGG + chr5_4:40163938-40163957 None:intergenic 50.0%
GGATTGCTGCCTGATGAACT+TGG - chr5_4:40164104-40164123 Msa0850590:intron 50.0%
GAGTCCTCACCAAGTTCATC+AGG + chr5_4:40164116-40164135 None:intergenic 50.0%
GTCTGTGTGGGTAATGAACG+TGG - chr5_4:40164316-40164335 Msa0850590:CDS 50.0%
ATGAACGTGGTCCCAAGAAC+TGG - chr5_4:40164329-40164348 Msa0850590:intron 50.0%
AAACCTCGGTCCTGGATCAA+GGG + chr5_4:40164368-40164387 None:intergenic 50.0%
AAAACCTCGGTCCTGGATCA+AGG + chr5_4:40164369-40164388 None:intergenic 50.0%
!! ATCCAGGACCGAGGTTTTGT+CGG - chr5_4:40164371-40164390 Msa0850590:intron 50.0%
GCAAAACGCCGACAAAACCT+CGG + chr5_4:40164382-40164401 None:intergenic 50.0%
GACTCTGAGCCAAAGGTAAG+TGG + chr5_4:40164765-40164784 None:intergenic 50.0%
TCTGCAAGACTCTGAGCCAA+AGG + chr5_4:40164772-40164791 None:intergenic 50.0%
GCACCAAGTCATAGGTTCTC+GGG + chr5_4:40164884-40164903 None:intergenic 50.0%
TGCTGCATGCACCAAGTCAT+AGG + chr5_4:40164892-40164911 None:intergenic 50.0%
!! TATGACTTGGTGCATGCAGC+AGG - chr5_4:40164891-40164910 Msa0850590:CDS 50.0%
!! ATGACTTGGTGCATGCAGCA+GGG - chr5_4:40164892-40164911 Msa0850590:CDS 50.0%
TCAAGCATGGTGCACCTAAG+TGG + chr5_4:40164942-40164961 None:intergenic 50.0%
! TGTCATGTCAGATTGGTCCC+TGG - chr5_4:40165459-40165478 Msa0850590:intron 50.0%
ATTGGTCCCTGGAGTTACTC+AGG - chr5_4:40165470-40165489 Msa0850590:intron 50.0%
TTGGTCCCTGGAGTTACTCA+GGG - chr5_4:40165471-40165490 Msa0850590:intron 50.0%
GATACTCCCTGAGTAACTCC+AGG + chr5_4:40165480-40165499 None:intergenic 50.0%
GGGACCAAATTGACACATGC+TGG - chr5_4:40165633-40165652 Msa0850590:intron 50.0%
TGACACATGCTGGCAAAGTG+AGG - chr5_4:40165643-40165662 Msa0850590:intron 50.0%
GACACATGCTGGCAAAGTGA+GGG - chr5_4:40165644-40165663 Msa0850590:intron 50.0%
GTTTGTCATGTGTGCAGGGT+TGG - chr5_4:40165725-40165744 Msa0850590:intron 50.0%
TCTTAGCAGCCCAGCTGAAA+TGG - chr5_4:40165791-40165810 Msa0850590:five_prime_UTR 50.0%
CTTAGCAGCCCAGCTGAAAT+GGG - chr5_4:40165792-40165811 Msa0850590:five_prime_UTR 50.0%
CTCTTGCTTCCCATTTCAGC+TGG + chr5_4:40165804-40165823 None:intergenic 50.0%
ATGACCCTATGCACGCCTTA+CGG + chr5_4:40166057-40166076 None:intergenic 50.0%
CAGACACTGTCTGCTCGCTT+CGG + chr5_4:40160827-40160846 None:intergenic 55.0%
CCGGAAACACCTCGATGTAG+AGG + chr5_4:40161690-40161709 None:intergenic 55.0%
GGGCCGAGAACCTTTCTTTC+TGG + chr5_4:40163842-40163861 None:intergenic 55.0%
TCGAGACCTCTACCACACAG+GGG + chr5_4:40163862-40163881 None:intergenic 55.0%
CATCGAGACCTCTACCACAC+AGG + chr5_4:40163864-40163883 None:intergenic 55.0%
GTGTGGTAGAGGTCTCGATG+TGG - chr5_4:40163864-40163883 Msa0850590:intron 55.0%
! GCTGCCTGATGAACTTGGTG+AGG - chr5_4:40164109-40164128 Msa0850590:intron 55.0%
TTGGTGAGGACTCTGACAGC+TGG - chr5_4:40164123-40164142 Msa0850590:intron 55.0%
TCTGATCATCCGAAGAGGCC+CGG - chr5_4:40164194-40164213 Msa0850590:intron 55.0%
GGTTCTCGGGTATGTCGGAA+AGG + chr5_4:40164871-40164890 None:intergenic 55.0%
CATGGTGCACCTAAGTGGCT+GGG + chr5_4:40164937-40164956 None:intergenic 55.0%
TGACAGGTTACTTCGCCCAG+AGG - chr5_4:40164977-40164996 Msa0850590:CDS 55.0%
TTACGGCTGCACAGGAGAAG+CGG + chr5_4:40166040-40166059 None:intergenic 55.0%
TCGGTGATGTGTCGGGGTCA+AGG + chr5_4:40160670-40160689 None:intergenic 60.0%
AAAGGTTCTCGGCCCCTGTG+TGG - chr5_4:40163847-40163866 Msa0850590:intron 60.0%
CTTCCCTTGATCCAGGACCG+AGG - chr5_4:40164362-40164381 Msa0850590:intron 60.0%
TTGTGTGGCCTCTAGGTGCG+AGG - chr5_4:40164845-40164864 Msa0850590:CDS 60.0%
GCATGGTGCACCTAAGTGGC+TGG + chr5_4:40164938-40164957 None:intergenic 60.0%
GCTTCTCCTGTGCAGCCGTA+AGG - chr5_4:40166039-40166058 Msa0850590:five_prime_UTR 60.0%
TGCAGCCGTAAGGCGTGCAT+AGG - chr5_4:40166049-40166068 Msa0850590:five_prime_UTR 60.0%
GCAGCCGTAAGGCGTGCATA+GGG - chr5_4:40166050-40166069 Msa0850590:five_prime_UTR 60.0%
TCTCGGCCCCTGTGTGGTAG+AGG - chr5_4:40163853-40163872 Msa0850590:intron 65.0%
TCCTCGTCACCGGGCCTCTT+CGG + chr5_4:40164206-40164225 None:intergenic 65.0%
GGAGAAGGGTCCTCGTCACC+GGG + chr5_4:40164215-40164234 None:intergenic 65.0%
CGGAGAAGGGTCCTCGTCAC+CGG + chr5_4:40164216-40164235 None:intergenic 65.0%
CGCCGACAAAACCTCGGTCC+TGG + chr5_4:40164376-40164395 None:intergenic 65.0%
CGGAAAGGCCTCGCACCTAG+AGG + chr5_4:40164856-40164875 None:intergenic 65.0%
TGCACGCCTTACGGCTGCAC+AGG + chr5_4:40166048-40166067 None:intergenic 65.0%
GAGGAACACAGACCCGCCGC+TGG - chr5_4:40163923-40163942 Msa0850590:intron 70.0%
TCCGAAGAGGCCCGGTGACG+AGG - chr5_4:40164202-40164221 Msa0850590:intron 70.0%
CGGCTGCACAGGAGAAGCGG+TGG + chr5_4:40166037-40166056 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 40160625 40166262 40160625 ID=Msa0850590;Name=Msa0850590
chr5_4 mRNA 40160625 40166262 40160625 ID=Msa0850590-mRNA-1;Parent=Msa0850590;Name=Msa0850590-mRNA-1;_AED=0.02;_eAED=0.02;_QI=666|1|1|1|0.87|0.77|9|362|675
chr5_4 exon 40160625 40161145 40160625 ID=Msa0850590-mRNA-1:exon:12656;Parent=Msa0850590-mRNA-1
chr5_4 exon 40161889 40162027 40161889 ID=Msa0850590-mRNA-1:exon:12655;Parent=Msa0850590-mRNA-1
chr5_4 exon 40162479 40162782 40162479 ID=Msa0850590-mRNA-1:exon:12654;Parent=Msa0850590-mRNA-1
chr5_4 exon 40162872 40163044 40162872 ID=Msa0850590-mRNA-1:exon:12653;Parent=Msa0850590-mRNA-1
chr5_4 exon 40163133 40163346 40163133 ID=Msa0850590-mRNA-1:exon:12652;Parent=Msa0850590-mRNA-1
chr5_4 exon 40163450 40163690 40163450 ID=Msa0850590-mRNA-1:exon:12651;Parent=Msa0850590-mRNA-1
chr5_4 exon 40164207 40164339 40164207 ID=Msa0850590-mRNA-1:exon:12650;Parent=Msa0850590-mRNA-1
chr5_4 exon 40164545 40165392 40164545 ID=Msa0850590-mRNA-1:exon:12649;Parent=Msa0850590-mRNA-1
chr5_4 exon 40165780 40166262 40165780 ID=Msa0850590-mRNA-1:exon:12648;Parent=Msa0850590-mRNA-1
chr5_4 five_prime_UTR 40165780 40166262 40165780 ID=Msa0850590-mRNA-1:five_prime_utr;Parent=Msa0850590-mRNA-1
chr5_4 five_prime_UTR 40165210 40165392 40165210 ID=Msa0850590-mRNA-1:five_prime_utr;Parent=Msa0850590-mRNA-1
chr5_4 CDS 40164545 40165209 40164545 ID=Msa0850590-mRNA-1:cds;Parent=Msa0850590-mRNA-1
chr5_4 CDS 40164207 40164339 40164207 ID=Msa0850590-mRNA-1:cds;Parent=Msa0850590-mRNA-1
chr5_4 CDS 40163450 40163690 40163450 ID=Msa0850590-mRNA-1:cds;Parent=Msa0850590-mRNA-1
chr5_4 CDS 40163133 40163346 40163133 ID=Msa0850590-mRNA-1:cds;Parent=Msa0850590-mRNA-1
chr5_4 CDS 40162872 40163044 40162872 ID=Msa0850590-mRNA-1:cds;Parent=Msa0850590-mRNA-1
chr5_4 CDS 40162479 40162782 40162479 ID=Msa0850590-mRNA-1:cds;Parent=Msa0850590-mRNA-1
chr5_4 CDS 40161889 40162027 40161889 ID=Msa0850590-mRNA-1:cds;Parent=Msa0850590-mRNA-1
chr5_4 CDS 40160987 40161145 40160987 ID=Msa0850590-mRNA-1:cds;Parent=Msa0850590-mRNA-1
chr5_4 three_prime_UTR 40160625 40160986 40160625 ID=Msa0850590-mRNA-1:three_prime_utr;Parent=Msa0850590-mRNA-1
Gene Sequence

>Msa0850590

ATGTCTAGGCCTCTACATCGAGGTGTTTCCGGTACTCGTGTACCGGAAAACATCAATGATGATACATGGGACTCTCAATCCAAAGATAAATCAGAAAAAGATGATTTTGATAGAAGGGGTTCTTCAGATCACACCCCTTTAGCATTGAGGTCTCCTTTGAAGTTGTTGTTTTCAGATAAAGAGAATGGTTTTGCATCTGATCCAATCAGTGTTGGCTCACCAAGAAGCCGTTTTAAGTTGATGATGTTTTTGGTGAAATTTAGTTTAGTTTTTATAGTTGTTTTTGCTCTTGTTGGATCTTTTTTGTGGACTTTGAATTTGTCATCTTCGTCAAGAGGTCGTGTTTACCATGGTTATAGGAGACTTCAAGAGAAACTTGTTTCAGATTTGTTGGATATTGGTGAGATTTCTAGGGGTGCTTCAAGGTGGAAAGAATTGGAATCTTGTTCTCCTGAGTTGGAAAATTTTGTTCCTTGCTTTAATGTTTCCGATGGAAATGAGTTTGAAAGGAAATGTGAATATGAGCAGAGTCAAAATTGTTTGGTTCTGCCACCAGTTAATTACAAAGTTCCTCTTAGATGGCCTACTGGAAAAGATGTTATTTGGGTTGCTAATGTGAAAATCACTGCACAAGAGGTTCTTTCTTCTGGAAGCTTGACCAAGAGGATGATGATGTTGGATGAAGAACAAATTTCCTTTCGTTCAGCCTCTCATATGTTTGATGGAGTTGAAGACTATTCACATCAGATTGCTGAAATGATTGGACTTAGAAATGAATCTTCCTTCATACAAGCTGGTATTCGAACCGTACTAGACATAGGTTGTGGCTATGGTAGCTTTGGAGCACACCTCTTTGACAGTCAAATTTTGACTTTGTGCATTGCAAACTATGAGCCTTCTGGTAGTCAAGTTCAGCTTACTCTTGAGCGAGGTCTTCCTGCTATGATTGCTTCTTTCACTTCAAAACAGTTGCCATATCCATCTCTGTCTTTTGATATGTTACATTGTGCAAGATGTGGCATTGATTGGGACCAGAAAGATGGCAATCTCTTGATTGAAGCTGATAGACTTTTAAGACCGGGTGGATACTTTGTTTGGACCTCACCGCTTACAAATGCTCGTAACAAGGAGAATCAGAAAAGGTGGAAGATTGTGCACGACTTTACCGAAAATCTGTGCTGGGACATGTTATCACAGCAAGATGAAACTGTTGTATTTAAAAAAGCAAGCAAAAAGAATTGTTATACATCAAGAAAGAAAGGTTCTCGGCCCCTGTGTGGTAGAGGTCTCGATGTGGAGTCTCCATATTATCGCGAACTGCAAAACTGCATAGGAGGAACACAGACCCGCCGCTGGCTTTCAATTGAAAAAAGGGAAAAATGGCCTTCTCGGGCTAATTTGAACAAGAATGAGTTAGCCATACATGGATTGCTGCCTGATGAACTTGGTGAGGACTCTGACAGCTGGAAAGCAGCAGTGCAAAATTATTGGTCACTCCTGTCGCCTGTAATATTTTCTGATCATCCGAAGAGGCCCGGTGACGAGGACCCTTCTCCGCCTTACAACATGTTCAGAAATGTGTTAGACATGAATGCTAACTTTGGTGGCTTTAATTCTGCTTTGTTGCAAGCTAGAAAGTCTGTGTGGGTAATGAACGTGGTCCCAAGAACTGGACCTAACTATCTTCCCTTGATCCAGGACCGAGGTTTTGTCGGCGTTTTGCATGATTGGTGCGAGGCCTTTCCGACATACCCGAGAACCTATGACTTGGTGCATGCAGCAGGGATTCTATCCCTTGAATTTTCCCAGCCACTTAGGTGCACCATGCTTGATCTGTTCATTGAAATTGACAGGTTACTTCGCCCAGAGGGTTGGATTATAATTCGCGACACTATTCCTTTAATAGAATCAGCTAGAGTCTTAGCAGCCCAGCTGAAATGGGAAGCAAGAGTGATCGAAATCGAAAGTAACAGCGAGGAGAAACTCCTGATATGCCAGAAACCTTTCTTCAAGAAACATGCAATCTAA
Protein sequence

>Msa0850590

MSRPLHRGVSGTRVPENINDDTWDSQSKDKSEKDDFDRRGSSDHTPLALRSPLKLLFSDKENGFASDPISVGSPRSRFKLMMFLVKFSLVFIVVFALVGSFLWTLNLSSSSRGRVYHGYRRLQEKLVSDLLDIGEISRGASRWKELESCSPELENFVPCFNVSDGNEFERKCEYEQSQNCLVLPPVNYKVPLRWPTGKDVIWVANVKITAQEVLSSGSLTKRMMMLDEEQISFRSASHMFDGVEDYSHQIAEMIGLRNESSFIQAGIRTVLDIGCGYGSFGAHLFDSQILTLCIANYEPSGSQVQLTLERGLPAMIASFTSKQLPYPSLSFDMLHCARCGIDWDQKDGNLLIEADRLLRPGGYFVWTSPLTNARNKENQKRWKIVHDFTENLCWDMLSQQDETVVFKKASKKNCYTSRKKGSRPLCGRGLDVESPYYRELQNCIGGTQTRRWLSIEKREKWPSRANLNKNELAIHGLLPDELGEDSDSWKAAVQNYWSLLSPVIFSDHPKRPGDEDPSPPYNMFRNVLDMNANFGGFNSALLQARKSVWVMNVVPRTGPNYLPLIQDRGFVGVLHDWCEAFPTYPRTYDLVHAAGILSLEFSQPLRCTMLDLFIEIDRLLRPEGWIIIRDTIPLIESARVLAAQLKWEARVIEIESNSEEKLLICQKPFFKKHAI*