AlfalfaGEDB | Msa1365200

M. sativa cultivar zhongmu-4 / Msa1365200

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1365200	XP_024636099.1	96.026	151	6	0	1	151	1	151	7.29e-101	296

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1365200	sp\|Q9SUM5\|BH146_ARATH	38.509	161	86	2	1	151	1	158	6.51e-27	101

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1365200	A0A396IGJ1	96.026	151	6	0	1	151	1	151	3.48e-101	296

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004360	Msa1365200	0.827814	1.270900e-54	-8.615850e-47
Msa0005050	Msa1365200	0.814897	1.219280e-51	-8.615850e-47
Msa0008410	Msa1365200	0.806535	7.847796e-50	-8.615850e-47
Msa0008830	Msa1365200	0.817516	3.167332e-52	-8.615850e-47
Msa0024680	Msa1365200	0.817606	3.022752e-52	-8.615850e-47
Msa0030310	Msa1365200	0.821930	3.107786e-53	-8.615850e-47
Msa0032840	Msa1365200	-0.809074	2.264708e-50	-8.615850e-47
Msa0036430	Msa1365200	0.848489	5.934111e-60	-8.615850e-47
Msa0044020	Msa1365200	0.810100	1.363350e-50	-8.615850e-47
Msa0053110	Msa1365200	0.829633	4.614619e-55	-8.615850e-47
Msa0057240	Msa1365200	0.807224	5.611214e-50	-8.615850e-47
Msa0064820	Msa1365200	0.803858	2.851948e-49	-8.615850e-47
Msa0072810	Msa1365200	0.825563	4.379566e-54	-8.615850e-47
Msa0073670	Msa1365200	0.816934	4.279894e-52	-8.615850e-47
Msa0082280	Msa1365200	0.801763	7.723081e-49	-8.615850e-47
Msa0083920	Msa1365200	0.812679	3.755235e-51	-8.615850e-47
Msa0084500	Msa1365200	0.805096	1.574491e-49	-8.615850e-47
Msa0090590	Msa1365200	0.805425	1.343117e-49	-8.615850e-47
Msa0095380	Msa1365200	0.806775	6.983889e-50	-8.615850e-47
Msa0096670	Msa1365200	0.814380	1.587003e-51	-8.615850e-47
Msa0098440	Msa1365200	0.809530	1.808262e-50	-8.615850e-47
Msa0103000	Msa1365200	0.812061	5.124474e-51	-8.615850e-47
Msa0109950	Msa1365200	0.836632	8.351097e-57	-8.615850e-47
Msa0113160	Msa1365200	0.824591	7.428747e-54	-8.615850e-47
Msa1344850	Msa1365200	0.820416	6.938650e-53	-8.615850e-47
Msa1345450	Msa1365200	0.806834	6.785643e-50	-8.615850e-47
Msa1355400	Msa1365200	0.821482	3.945048e-53	-8.615850e-47
Msa1362510	Msa1365200	0.801580	8.420324e-49	-8.615850e-47
Msa1365150	Msa1365200	0.844165	8.952784e-59	-8.615850e-47
Msa1365200	Msa1367880	0.837031	6.606847e-57	-8.615850e-47
Msa1365200	Msa1370860	0.802777	4.775165e-49	-8.615850e-47
Msa1365200	Msa1373510	0.806918	6.514643e-50	-8.615850e-47
Msa1365200	Msa1374440	0.815659	8.253150e-52	-8.615850e-47
Msa1365200	Msa1375940	0.802484	5.490040e-49	-8.615850e-47
Msa1365200	Msa1379570	0.810460	1.140139e-50	-8.615850e-47
Msa1365200	Msa1379990	0.849844	2.491687e-60	-8.615850e-47
Msa1365200	Msa1382310	0.819807	9.564372e-53	-8.615850e-47
Msa1365200	Msa1387190	0.805979	1.027644e-49	-8.615850e-47
Msa1365200	Msa1390310	0.837343	5.498335e-57	-8.615850e-47
Msa1365200	Msa1391590	0.817125	3.878382e-52	-8.615850e-47
Msa1365200	Msa1404190	0.822452	2.350512e-53	-8.615850e-47
Msa1365200	Msa1420060	0.845680	3.491120e-59	-8.615850e-47
Msa1365200	Msa1422270	0.824480	7.888343e-54	-8.615850e-47
Msa1365200	Msa1428290	0.872264	3.634032e-67	-8.615850e-47
Msa1365200	Msa1429420	0.800441	1.439284e-48	-8.615850e-47
Msa1365200	Msa1438640	0.838746	2.395126e-57	-8.615850e-47
Msa1365200	Msa1439960	0.803748	3.005620e-49	-8.615850e-47
Msa1365200	Msa1442850	0.815894	7.315005e-52	-8.615850e-47
Msa1365200	Msa1465080	0.812995	3.201773e-51	-8.615850e-47
Msa1365200	Msa1466990	0.825763	3.925672e-54	-8.615850e-47
Msa0607200	Msa1365200	0.804962	1.678882e-49	-8.615850e-47
Msa0607500	Msa1365200	0.816055	6.736506e-52	-8.615850e-47
Msa0609450	Msa1365200	0.803401	3.548115e-49	-8.615850e-47
Msa0619980	Msa1365200	0.844313	8.168617e-59	-8.615850e-47
Msa0620990	Msa1365200	0.817792	2.744324e-52	-8.615850e-47
Msa0638690	Msa1365200	0.806468	8.106411e-50	-8.615850e-47
Msa0639120	Msa1365200	0.833923	4.035095e-56	-8.615850e-47
Msa0642650	Msa1365200	0.820205	7.758709e-53	-8.615850e-47
Msa0647380	Msa1365200	0.806614	7.551850e-50	-8.615850e-47
Msa0650090	Msa1365200	0.816086	6.627830e-52	-8.615850e-47
Msa0663900	Msa1365200	0.815951	7.103736e-52	-8.615850e-47
Msa0669850	Msa1365200	0.820331	7.255964e-53	-8.615850e-47
Msa0678860	Msa1365200	0.812690	3.734652e-51	-8.615850e-47
Msa0678890	Msa1365200	0.801692	7.988209e-49	-8.615850e-47
Msa0681890	Msa1365200	0.807460	5.001533e-50	-8.615850e-47
Msa0684500	Msa1365200	0.802516	5.405462e-49	-8.615850e-47
Msa0687630	Msa1365200	0.815679	8.168228e-52	-8.615850e-47
Msa0692080	Msa1365200	0.825397	4.793109e-54	-8.615850e-47
Msa0697690	Msa1365200	0.805941	1.046765e-49	-8.615850e-47
Msa0703230	Msa1365200	0.821457	3.996161e-53	-8.615850e-47
Msa0706370	Msa1365200	0.835793	1.364215e-56	-8.615850e-47
Msa0707220	Msa1365200	0.803248	3.817114e-49	-8.615850e-47
Msa0734300	Msa1365200	0.815559	8.687367e-52	-8.615850e-47
Msa0740040	Msa1365200	0.825081	5.692020e-54	-8.615850e-47
Msa0741900	Msa1365200	0.819315	1.238618e-52	-8.615850e-47
Msa0747780	Msa1365200	0.828396	9.204262e-55	-8.615850e-47
Msa0755340	Msa1365200	0.825731	3.995374e-54	-8.615850e-47
Msa0757870	Msa1365200	0.808808	2.581800e-50	-8.615850e-47
Msa0761580	Msa1365200	0.817862	2.645993e-52	-8.615850e-47
Msa0772020	Msa1365200	0.803849	2.864849e-49	-8.615850e-47
Msa0787810	Msa1365200	0.815736	7.935266e-52	-8.615850e-47
Msa0797120	Msa1365200	0.821628	3.650314e-53	-8.615850e-47
Msa0799210	Msa1365200	0.805982	1.026144e-49	-8.615850e-47
Msa0810020	Msa1365200	0.839767	1.301430e-57	-8.615850e-47
Msa0813100	Msa1365200	0.825403	4.777593e-54	-8.615850e-47
Msa0814320	Msa1365200	0.801404	9.150514e-49	-8.615850e-47
Msa0822990	Msa1365200	0.825969	3.508291e-54	-8.615850e-47
Msa0824540	Msa1365200	0.811512	6.745466e-51	-8.615850e-47
Msa0824910	Msa1365200	0.824710	6.964160e-54	-8.615850e-47
Msa0127820	Msa1365200	0.800296	1.540224e-48	-8.615850e-47
Msa0130570	Msa1365200	0.828016	1.136514e-54	-8.615850e-47
Msa0134130	Msa1365200	0.841073	5.925510e-58	-8.615850e-47
Msa0139900	Msa1365200	0.809527	1.810775e-50	-8.615850e-47
Msa0141830	Msa1365200	0.807543	4.802692e-50	-8.615850e-47
Msa0143080	Msa1365200	0.801215	1.000284e-48	-8.615850e-47
Msa0143430	Msa1365200	0.820527	6.543073e-53	-8.615850e-47
Msa0145950	Msa1365200	0.805870	1.083329e-49	-8.615850e-47
Msa0149560	Msa1365200	0.807954	3.926612e-50	-8.615850e-47
Msa0156150	Msa1365200	0.811388	7.176672e-51	-8.615850e-47
Msa0161200	Msa1365200	0.802692	4.972857e-49	-8.615850e-47
Msa0169620	Msa1365200	0.808179	3.517717e-50	-8.615850e-47
Msa0172350	Msa1365200	0.822744	2.010434e-53	-8.615850e-47
Msa0173820	Msa1365200	0.802158	6.405599e-49	-8.615850e-47
Msa0174770	Msa1365200	0.816356	5.768362e-52	-8.615850e-47
Msa0181610	Msa1365200	0.807855	4.121883e-50	-8.615850e-47
Msa0183620	Msa1365200	0.804792	1.822715e-49	-8.615850e-47
Msa0183830	Msa1365200	0.817517	3.164759e-52	-8.615850e-47
Msa0186890	Msa1365200	0.818594	1.807180e-52	-8.615850e-47
Msa0194540	Msa1365200	0.806945	6.427240e-50	-8.615850e-47
Msa0200970	Msa1365200	0.806532	7.858790e-50	-8.615850e-47
Msa0203160	Msa1365200	0.848176	7.239825e-60	-8.615850e-47
Msa0219190	Msa1365200	0.842256	2.890092e-58	-8.615850e-47
Msa0230550	Msa1365200	-0.808367	3.206693e-50	-8.615850e-47
Msa0235890	Msa1365200	0.806135	9.526083e-50	-8.615850e-47
Msa0236980	Msa1365200	0.802774	4.783511e-49	-8.615850e-47
Msa1227690	Msa1365200	0.812930	3.309281e-51	-8.615850e-47
Msa1237030	Msa1365200	0.803904	2.789537e-49	-8.615850e-47
Msa1246530	Msa1365200	-0.814759	1.307857e-51	-8.615850e-47
Msa1249870	Msa1365200	0.809818	1.567586e-50	-8.615850e-47
Msa1254710	Msa1365200	0.837683	4.498588e-57	-8.615850e-47
Msa1272330	Msa1365200	0.839475	1.550212e-57	-8.615850e-47
Msa1280560	Msa1365200	0.803068	4.158469e-49	-8.615850e-47
Msa1283170	Msa1365200	0.813426	2.575707e-51	-8.615850e-47
Msa1294840	Msa1365200	0.817548	3.114152e-52	-8.615850e-47
Msa1299360	Msa1365200	0.807843	4.146856e-50	-8.615850e-47
Msa1307950	Msa1365200	0.812879	3.395607e-51	-8.615850e-47
Msa0370600	Msa1365200	0.822550	2.230573e-53	-8.615850e-47
Msa0394400	Msa1365200	0.818440	1.958490e-52	-8.615850e-47
Msa0402330	Msa1365200	0.828648	7.997517e-55	-8.615850e-47
Msa0413450	Msa1365200	0.830389	3.018829e-55	-8.615850e-47
Msa0413930	Msa1365200	0.814683	1.359597e-51	-8.615850e-47
Msa0415810	Msa1365200	0.800115	1.676489e-48	-8.615850e-47
Msa0418200	Msa1365200	0.826616	2.459632e-54	-8.615850e-47
Msa0420000	Msa1365200	0.806275	8.901303e-50	-8.615850e-47
Msa0422910	Msa1365200	0.805184	1.508526e-49	-8.615850e-47
Msa0426330	Msa1365200	0.815697	8.095292e-52	-8.615850e-47
Msa0436460	Msa1365200	0.844160	8.978635e-59	-8.615850e-47
Msa0436500	Msa1365200	0.827061	1.926421e-54	-8.615850e-47
Msa0441800	Msa1365200	0.806598	7.611209e-50	-8.615850e-47
Msa0444010	Msa1365200	0.808080	3.691825e-50	-8.615850e-47
Msa0448750	Msa1365200	0.801056	1.077788e-48	-8.615850e-47
Msa0458950	Msa1365200	0.802328	5.911519e-49	-8.615850e-47
Msa0464540	Msa1365200	0.813935	1.989068e-51	-8.615850e-47
Msa0469910	Msa1365200	-0.829040	6.430555e-55	-8.615850e-47
Msa0472380	Msa1365200	0.805778	1.132429e-49	-8.615850e-47
Msa0990520	Msa1365200	0.806343	8.613145e-50	-8.615850e-47
Msa1004500	Msa1365200	0.803853	2.859191e-49	-8.615850e-47
Msa1007350	Msa1365200	0.816348	5.793088e-52	-8.615850e-47
Msa1012810	Msa1365200	0.801839	7.451829e-49	-8.615850e-47
Msa1018790	Msa1365200	0.857701	1.364215e-62	-8.615850e-47
Msa1032450	Msa1365200	0.835510	1.609098e-56	-8.615850e-47
Msa1033560	Msa1365200	0.874754	5.274780e-68	-8.615850e-47
Msa1037920	Msa1365200	0.823745	1.174221e-53	-8.615850e-47
Msa1041530	Msa1365200	0.848245	6.931606e-60	-8.615850e-47
Msa1044340	Msa1365200	0.816273	6.021860e-52	-8.615850e-47
Msa1045880	Msa1365200	0.807160	5.789654e-50	-8.615850e-47
Msa1045970	Msa1365200	0.813355	2.668958e-51	-8.615850e-47
Msa1055500	Msa1365200	0.822947	1.803030e-53	-8.615850e-47
Msa1061500	Msa1365200	0.804818	1.799364e-49	-8.615850e-47
Msa1061920	Msa1365200	0.822034	2.938675e-53	-8.615850e-47
Msa1073350	Msa1365200	0.816866	4.433633e-52	-8.615850e-47
Msa1081570	Msa1365200	0.822832	1.918324e-53	-8.615850e-47
Msa1082700	Msa1365200	0.847632	1.022451e-59	-8.615850e-47
Msa1097640	Msa1365200	0.807865	4.102381e-50	-8.615850e-47
Msa1100700	Msa1365200	0.802200	6.279835e-49	-8.615850e-47
Msa1106810	Msa1365200	0.837835	4.110087e-57	-8.615850e-47
Msa0239450	Msa1365200	0.813791	2.140858e-51	-8.615850e-47
Msa0242680	Msa1365200	0.802734	4.874208e-49	-8.615850e-47
Msa0246280	Msa1365200	0.829830	4.131720e-55	-8.615850e-47
Msa0251250	Msa1365200	0.810256	1.261443e-50	-8.615850e-47
Msa0257310	Msa1365200	0.801891	7.268650e-49	-8.615850e-47
Msa0259560	Msa1365200	0.822935	1.814619e-53	-8.615850e-47
Msa0264570	Msa1365200	0.811688	6.178771e-51	-8.615850e-47
Msa0267760	Msa1365200	0.819533	1.105133e-52	-8.615850e-47
Msa0280490	Msa1365200	0.816795	4.599827e-52	-8.615850e-47
Msa0282850	Msa1365200	0.813294	2.753672e-51	-8.615850e-47
Msa0291520	Msa1365200	0.807812	4.209361e-50	-8.615850e-47
Msa0298240	Msa1365200	0.825738	3.980615e-54	-8.615850e-47
Msa0315240	Msa1365200	0.803336	3.660438e-49	-8.615850e-47
Msa0328210	Msa1365200	0.815503	8.941645e-52	-8.615850e-47
Msa0336090	Msa1365200	0.833014	6.800579e-56	-8.615850e-47
Msa0337850	Msa1365200	0.821728	3.461001e-53	-8.615850e-47
Msa0355270	Msa1365200	0.835000	2.164486e-56	-8.615850e-47
Msa1107440	Msa1365200	0.837703	4.444437e-57	-8.615850e-47
Msa1113850	Msa1365200	0.830643	2.615761e-55	-8.615850e-47
Msa1123880	Msa1365200	0.806732	7.131232e-50	-8.615850e-47
Msa1126510	Msa1365200	0.814228	1.714427e-51	-8.615850e-47
Msa1126770	Msa1365200	0.832177	1.096844e-55	-8.615850e-47
Msa1127140	Msa1365200	0.839641	1.403626e-57	-8.615850e-47
Msa1127890	Msa1365200	0.814054	1.873371e-51	-8.615850e-47
Msa1129980	Msa1365200	0.801935	7.118734e-49	-8.615850e-47
Msa1134110	Msa1365200	0.806205	9.210232e-50	-8.615850e-47
Msa1136230	Msa1365200	0.801863	7.365084e-49	-8.615850e-47
Msa1139810	Msa1365200	0.835605	1.522439e-56	-8.615850e-47
Msa1147270	Msa1365200	0.811240	7.729916e-51	-8.615850e-47
Msa1150970	Msa1365200	0.867428	1.378300e-65	-8.615850e-47
Msa1160400	Msa1365200	0.849440	3.229193e-60	-8.615850e-47
Msa1166400	Msa1365200	0.836553	8.746231e-57	-8.615850e-47
Msa1166860	Msa1365200	0.805497	1.297450e-49	-8.615850e-47
Msa1169990	Msa1365200	0.817842	2.673784e-52	-8.615850e-47
Msa1174100	Msa1365200	0.815881	7.366314e-52	-8.615850e-47
Msa1184370	Msa1365200	0.810426	1.159821e-50	-8.615850e-47
Msa1186830	Msa1365200	0.825359	4.893262e-54	-8.615850e-47
Msa1193950	Msa1365200	-0.821508	3.890459e-53	-8.615850e-47
Msa1201830	Msa1365200	0.814396	1.573619e-51	-8.615850e-47
Msa1210810	Msa1365200	0.804536	2.060561e-49	-8.615850e-47
Msa1223840	Msa1365200	0.804327	2.278737e-49	-8.615850e-47
Msa0484690	Msa1365200	0.818239	2.174276e-52	-8.615850e-47
Msa0505150	Msa1365200	0.833344	5.627211e-56	-8.615850e-47
Msa0510440	Msa1365200	0.801059	1.076407e-48	-8.615850e-47
Msa0521880	Msa1365200	0.802123	6.512868e-49	-8.615850e-47
Msa0525340	Msa1365200	0.803539	3.321875e-49	-8.615850e-47
Msa0526710	Msa1365200	0.809103	2.232776e-50	-8.615850e-47
Msa0527590	Msa1365200	0.806267	8.935559e-50	-8.615850e-47
Msa0538220	Msa1365200	0.806814	6.851063e-50	-8.615850e-47
Msa0541860	Msa1365200	0.821101	4.827945e-53	-8.615850e-47
Msa0552810	Msa1365200	0.820160	7.944210e-53	-8.615850e-47
Msa0555910	Msa1365200	0.807336	5.311813e-50	-8.615850e-47
Msa0560470	Msa1365200	0.831998	1.214882e-55	-8.615850e-47
Msa0576980	Msa1365200	0.804688	1.915614e-49	-8.615850e-47
Msa0581070	Msa1365200	0.822845	1.904429e-53	-8.615850e-47
Msa0590680	Msa1365200	0.805042	1.615970e-49	-8.615850e-47
Msa0850500	Msa1365200	0.836993	6.756889e-57	-8.615850e-47
Msa0852730	Msa1365200	0.801004	1.104801e-48	-8.615850e-47
Msa0862100	Msa1365200	0.827147	1.836961e-54	-8.615850e-47
Msa0863240	Msa1365200	0.809078	2.260237e-50	-8.615850e-47
Msa0863970	Msa1365200	0.816682	4.875746e-52	-8.615850e-47
Msa0864010	Msa1365200	0.805833	1.102845e-49	-8.615850e-47
Msa0871890	Msa1365200	0.803659	3.137501e-49	-8.615850e-47
Msa0872310	Msa1365200	0.854871	9.220996e-62	-8.615850e-47
Msa0885060	Msa1365200	0.814098	1.831882e-51	-8.615850e-47
Msa0903330	Msa1365200	0.808688	2.739393e-50	-8.615850e-47
Msa0905550	Msa1365200	0.874829	4.973457e-68	-8.615850e-47
Msa0906370	Msa1365200	0.805519	1.283531e-49	-8.615850e-47
Msa0930330	Msa1365200	0.804980	1.664983e-49	-8.615850e-47
Msa0931950	Msa1365200	0.800737	1.252687e-48	-8.615850e-47
Msa0937550	Msa1365200	0.853970	1.680158e-61	-8.615850e-47
Msa0938430	Msa1365200	0.817694	2.887016e-52	-8.615850e-47
Msa0942730	Msa1365200	0.803211	3.885363e-49	-8.615850e-47
Msa0951710	Msa1365200	0.806502	7.974961e-50	-8.615850e-47
Msa0958020	Msa1365200	0.828785	7.411186e-55	-8.615850e-47
Msa0974750	Msa1365200	0.832516	9.043157e-56	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1365200	MtrunA17_Chr4g0072121	96.026	151	6	0	1	151	1	151	6.70e-105	296
Msa1365200	MtrunA17_Chr2g0298051	51.977	177	56	7	3	150	2	178	3.15e-50	158

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1365200	AT2G18969.1	40.230	174	81	4	1	151	1	174	2.20e-33	116
Msa1365200	AT4G30180.1	38.509	161	86	2	1	151	1	158	6.61e-28	101

Find 15 sgRNAs with CRISPR-Local

Find 19 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCCTTTATCTTCATCAATGC+TGG	0.377349	tig0018212:-10956	None:intergenic
TCCAGCATTGATGAAGATAA+AGG	0.403965	tig0018212:+10955	Msa1365200:CDS
AGAAGATGAAGAACTTGATA+AGG	0.412000	tig0018212:+11167	Msa1365200:CDS
TATAAGATGTTTACAAATGC+AGG	0.434952	tig0018212:+11249	Msa1365200:CDS
GGAAAATAATATTTCTTCAA+AGG	0.459877	tig0018212:+10976	Msa1365200:CDS
CCTTAAACTCAAGCTTCAAA+AGG	0.493255	tig0018212:+11075	Msa1365200:CDS
TAAGAATGTTAAGTATGAAG+TGG	0.531002	tig0018212:+11006	Msa1365200:CDS
GAATGAAGCTAGTGAAGATG+AGG	0.535484	tig0018212:+11144	Msa1365200:CDS
GTATGAAGTGGACATGGCAA+TGG	0.553114	tig0018212:+11018	Msa1365200:CDS
ACGTAGACGTGTTTATTCTG+TGG	0.593083	tig0018212:+10877	Msa1365200:CDS
ATCTTGATTAAACATGGAGG+AGG	0.595978	tig0018212:+10841	None:intergenic
TCACAAATCTCTTCTCCACC+AGG	0.612567	tig0018212:-11196	None:intergenic
TGTTAAGTATGAAGTGGACA+TGG	0.621830	tig0018212:+11012	Msa1365200:CDS
AACTTGATAAGGTTGATACC+TGG	0.636291	tig0018212:+11178	Msa1365200:CDS
TTGATAAGGTTGATACCTGG+TGG	0.649046	tig0018212:+11181	Msa1365200:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GGAAAATAATATTTCTTCAA+AGG	+	tig0018212:10976-10995	Msa1365200:CDS	20.0%
!!!	ATAGTTTGCACTATTTTGTT+TGG	-	tig0018212:10905-10924	None:intergenic	25.0%
!	TAAGAATGTTAAGTATGAAG+TGG	+	tig0018212:11006-11025	Msa1365200:CDS	25.0%
!	TATAAGATGTTTACAAATGC+AGG	+	tig0018212:11249-11268	Msa1365200:CDS	25.0%
	AGAAGATGAAGAACTTGATA+AGG	+	tig0018212:11167-11186	Msa1365200:CDS	30.0%
!!	TCCAGCATTGATGAAGATAA+AGG	+	tig0018212:10955-10974	Msa1365200:CDS	35.0%
	TCCTTTATCTTCATCAATGC+TGG	-	tig0018212:10959-10978	None:intergenic	35.0%
	TGTTAAGTATGAAGTGGACA+TGG	+	tig0018212:11012-11031	Msa1365200:CDS	35.0%
!!!	CCTTTTGAAGCTTGAGTTTA+AGG	-	tig0018212:11078-11097	None:intergenic	35.0%
	CCTTAAACTCAAGCTTCAAA+AGG	+	tig0018212:11075-11094	Msa1365200:CDS	35.0%
!!	AACTTGATAAGGTTGATACC+TGG	+	tig0018212:11178-11197	Msa1365200:CDS	35.0%
	ACGTAGACGTGTTTATTCTG+TGG	+	tig0018212:10877-10896	Msa1365200:CDS	40.0%
	GAATGAAGCTAGTGAAGATG+AGG	+	tig0018212:11144-11163	Msa1365200:CDS	40.0%
!!	TTGATAAGGTTGATACCTGG+TGG	+	tig0018212:11181-11200	Msa1365200:CDS	40.0%
	GTATGAAGTGGACATGGCAA+TGG	+	tig0018212:11018-11037	Msa1365200:CDS	45.0%
!!!	GCAATGGTTTTGTCAGCACA+AGG	+	tig0018212:11034-11053	Msa1365200:CDS	45.0%
!	TGTCAGCACAAGGTTTTGCA+TGG	+	tig0018212:11044-11063	Msa1365200:CDS	45.0%
!	CAAGGTTTTGCATGGAGTGA+TGG	+	tig0018212:11052-11071	Msa1365200:CDS	45.0%
	TCACAAATCTCTTCTCCACC+AGG	-	tig0018212:11199-11218	None:intergenic	45.0%

Chromosome	Type	Strat	End	Strand	Name
tig0018212	gene	10854	11309	10854	ID=Msa1365200;Name=Msa1365200
tig0018212	mRNA	10854	11309	10854	ID=Msa1365200-mRNA-1;Parent=Msa1365200;Name=Msa1365200-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|151
tig0018212	exon	10854	11309	10854	ID=Msa1365200-mRNA-1:exon:14421;Parent=Msa1365200-mRNA-1
tig0018212	CDS	10854	11309	10854	ID=Msa1365200-mRNA-1:cds;Parent=Msa1365200-mRNA-1

Gene Sequence

>Msa1365200

ATGGAGGAGGCACAACAAAATAAACGTAGACGTGTTTATTCTGTGGAACCAAACAAAATAGTGCAAACTATATTTGCTAGAAACTATTTAAGTTATTTAGTTCCAGCATTGATGAAGATAAAGGAAAATAATATTTCTTCAAAGGAAAATATTAAGAATGTTAAGTATGAAGTGGACATGGCAATGGTTTTGTCAGCACAAGGTTTTGCATGGAGTGATGGCCTTAAACTCAAGCTTCAAAAGGAATGTAATGTCAATGAAGTAGCTACAAACAGTAGAAGCATAATTGAGAATGAAGCTAGTGAAGATGAGGAGAAGATGAAGAACTTGATAAGGTTGATACCTGGTGGAGAAGAGATTTGTGATGAACAAGTTGTTAATGAATTAGAAAGTTATATAAGATGTTTACAAATGCAGGTGAATGTTCTTCAATGTTTAATAGCAGAGACATGTTGA

Protein sequence

>Msa1365200

MEEAQQNKRRRVYSVEPNKIVQTIFARNYLSYLVPALMKIKENNISSKENIKNVKYEVDMAMVLSAQGFAWSDGLKLKLQKECNVNEVATNSRSIIENEASEDEEKMKNLIRLIPGGEEICDEQVVNELESYIRCLQMQVNVLQCLIAETC*