AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0813100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0813100 MtrunA17_Chr5g0430241 87.468 391 16 2 1 358 1 391 0.0 696
Msa0813100 MtrunA17_Chr7g0242601 66.667 351 86 1 33 352 89 439 0.0 509
Msa0813100 MtrunA17_Chr3g0105171 69.972 363 78 1 24 355 17 379 6.57e-180 504
Msa0813100 MtrunA17_Chr4g0006241 67.521 351 83 1 33 352 83 433 5.30e-172 486
Msa0813100 MtrunA17_Chr1g0175301 34.451 328 166 6 30 310 20 345 9.27e-61 199
Msa0813100 MtrunA17_Chr7g0258651 36.585 328 156 9 36 314 25 349 1.65e-59 196
Msa0813100 MtrunA17_Chr1g0210511 37.118 229 102 5 123 311 15 241 2.44e-37 135
Msa0813100 MtrunA17_Chr4g0074071 27.414 321 182 10 29 312 91 397 5.78e-26 108
Msa0813100 MtrunA17_Chr2g0305881 30.579 121 83 1 29 149 89 208 4.41e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0813100 AT5G05580.1 66.197 355 89 1 32 355 79 433 4.41e-179 504
Msa0813100 AT3G11170.1 65.266 357 93 1 30 355 84 440 4.72e-176 496
Msa0813100 AT2G29980.1 63.369 374 102 2 15 353 3 376 1.31e-168 475
Msa0813100 AT5G05580.2 66.000 300 71 1 32 300 79 378 1.37e-147 422
Msa0813100 AT2G29980.2 59.707 273 75 2 15 252 3 275 2.65e-106 313
Msa0813100 AT3G12120.1 35.185 324 159 8 36 311 25 345 3.90e-60 198
Msa0813100 AT3G12120.2 35.185 324 159 8 36 311 25 345 3.90e-60 198
Msa0813100 AT4G30950.1 25.868 317 188 8 28 309 91 395 6.14e-25 105

Find 84 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGATTCTACGGTTATATTT+TGG 0.152216 5_3:+43603002 Msa0813100:three_prime_UTR
TGTAATGTAGTTACTCTTAA+TGG 0.164124 5_3:+43603184 Msa0813100:three_prime_UTR
GTTTGCATATCCAATTTATT+TGG 0.197044 5_3:+43601832 Msa0813100:CDS
CTCTTCAAGGGACAATGTTT+TGG 0.200655 5_3:+43601149 Msa0813100:CDS
CTAATATCTGCTATCTTAAA+TGG 0.243193 5_3:-43600986 None:intergenic
TAGTTGTGGTTCATGTTAAC+TGG 0.258087 5_3:+43603042 Msa0813100:three_prime_UTR
TTCTTCACCCAACAATGTTT+TGG 0.289522 5_3:-43601019 None:intergenic
CCTTGAAGAGGCCAATAAAT+TGG 0.326709 5_3:-43601136 None:intergenic
ACAACCGTTGATCGTGACTA+TGG 0.330583 5_3:+43602569 Msa0813100:CDS
AAGCTTCTCAGACAGTTCTT+TGG 0.350099 5_3:+43601332 Msa0813100:CDS
AAGTATTTAATTAGATGAAA+TGG 0.351127 5_3:-43602855 None:intergenic
TGGTTACAACCATTGTTTCT+TGG 0.351671 5_3:-43600919 None:intergenic
GTTGGTGGTTGCTGCATTGA+TGG 0.370799 5_3:+43601078 Msa0813100:CDS
CTGCTATTCCAAAACATTGT+TGG 0.377085 5_3:+43601011 Msa0813100:CDS
CCAATTTATTGGCCTCTTCA+AGG 0.379686 5_3:+43601136 Msa0813100:CDS
AGTAGAAGTCCTGGAAAATC+AGG 0.381452 5_3:+43601970 Msa0813100:CDS
GAATTGAGGAATGCAAAATA+TGG 0.383781 5_3:-43601371 None:intergenic
ACCGTAGAATCTGATTGAAT+TGG 0.394066 5_3:-43602992 None:intergenic
TTCTTTGGTGAATAACTTTG+TGG 0.397503 5_3:+43601347 Msa0813100:CDS
TGCTATTCCAAAACATTGTT+GGG 0.400992 5_3:+43601012 Msa0813100:CDS
TTCGGATATGTGGTGAATAG+AGG 0.421407 5_3:-43600879 None:intergenic
CTGCAATTCGGTTTGATAGC+TGG 0.423643 5_3:+43601104 Msa0813100:CDS
CTCTTAATGGAATAATATGT+TGG 0.438647 5_3:+43603197 Msa0813100:three_prime_UTR
CTTATTCATTGTGCTTCTTG+TGG 0.443124 5_3:-43602953 None:intergenic
GGGTGAGAACAAGTCGCTAC+AGG 0.447758 5_3:-43602007 None:intergenic
CATTGATGGTAGCTGCAATT+CGG 0.451954 5_3:+43601092 Msa0813100:CDS
TGTTCTTAGGGATGTGTTGG+TGG 0.458315 5_3:+43601063 Msa0813100:CDS
TCCAATTCAATCAGATTCTA+CGG 0.467968 5_3:+43602991 Msa0813100:three_prime_UTR
ATTATCTTAGTTGACAGAAA+AGG 0.475863 5_3:+43601751 Msa0813100:intron
AAGTGATAATGAGGAATTTG+AGG 0.477418 5_3:-43602647 None:intergenic
CACTAGGGTCAAATTCACTA+TGG 0.482540 5_3:-43600955 None:intergenic
TTAAATGGTGGAGGAGCACT+AGG 0.483704 5_3:-43600971 None:intergenic
TCTTTGGTGAATAACTTTGT+GGG 0.492978 5_3:+43601348 Msa0813100:CDS
AAAGAATGGGTCTCATTGCC+TGG 0.493956 5_3:+43603092 Msa0813100:three_prime_UTR
CAATTTATTGGCCTCTTCAA+GGG 0.495762 5_3:+43601137 Msa0813100:CDS
AACTGTCTGAGAAGCTTCCA+TGG 0.498606 5_3:-43601326 None:intergenic
GGATATGCAAACAATGGTAA+AGG 0.503671 5_3:-43601821 None:intergenic
TTCTTGTTCCATACCATGGA+TGG 0.504417 5_3:+43601391 Msa0813100:CDS
TTCACTAACCATCCATGGTA+TGG 0.508807 5_3:-43601399 None:intergenic
TCAATTCTTGTTCCATACCA+TGG 0.512241 5_3:+43601387 Msa0813100:CDS
AGTGATAATGAGGAATTTGA+GGG 0.516886 5_3:-43602646 None:intergenic
TTAATTAGATGAAATGGAAG+TGG 0.519942 5_3:-43602849 None:intergenic
CATCCTTCTCAACATTCCCA+TGG 0.520258 5_3:-43601567 None:intergenic
TTTCAGTGGAGTAGAAGTCC+TGG 0.522116 5_3:+43601961 Msa0813100:intron
ACTATGGTTGTAGCCACCAT+TGG 0.526256 5_3:-43600939 None:intergenic
AACAACATTCACCATGACAT+TGG 0.529424 5_3:+43602599 Msa0813100:CDS
TTGTGCTTCTTGTGGAGCTG+AGG 0.530462 5_3:-43602945 None:intergenic
GATCACTTTGTTAGTGACAC+TGG 0.533118 5_3:+43602897 Msa0813100:CDS
CAAAACATTGTCCCTTGAAG+AGG 0.537908 5_3:-43601148 None:intergenic
TCAAATTCCTCATTATCACT+TGG 0.546390 5_3:+43602649 Msa0813100:CDS
CCGTTGATCGTGACTATGGT+TGG 0.546535 5_3:+43602573 Msa0813100:CDS
TCATTATCACTTGGTTGAAG+CGG 0.556548 5_3:+43602658 Msa0813100:CDS
TCTGCTATCTTAAATGGTGG+AGG 0.559855 5_3:-43600980 None:intergenic
GAAACAATGGTTGTAACCAA+TGG 0.561552 5_3:+43600923 Msa0813100:CDS
AAAACACATCATCAAAACCA+TGG 0.564668 5_3:+43601550 Msa0813100:CDS
AAACCATGGGAATGTTGAGA+AGG 0.567280 5_3:+43601564 Msa0813100:CDS
GCTTCAACCAAGTGATAATG+AGG 0.573247 5_3:-43602656 None:intergenic
TGTTGAGAAGGATGAGTCAT+GGG 0.576329 5_3:+43601576 Msa0813100:CDS
ATGTTGAGAAGGATGAGTCA+TGG 0.582381 5_3:+43601575 Msa0813100:CDS
AGTTGTGGTTCATGTTAACT+GGG 0.584708 5_3:+43603043 Msa0813100:three_prime_UTR
AAGTAGCAACTGAATTTACC+AGG 0.587355 5_3:-43603110 None:intergenic
AACTGCAGATATTTGTCATG+TGG 0.590749 5_3:+43602338 Msa0813100:intron
ACTATTTCACTAACCATCCA+TGG 0.593170 5_3:-43601404 None:intergenic
AAACACATCATCAAAACCAT+GGG 0.596737 5_3:+43601551 Msa0813100:CDS
TTTACCTTGCCACGGTACCA+TGG 0.598110 5_3:-43602409 None:intergenic
GGTGAGAACAAGTCGCTACA+GGG 0.605127 5_3:-43602006 None:intergenic
TAGGAATGGAGCTATCTAAG+AGG 0.606740 5_3:+43602539 Msa0813100:intron
GAATGGAGCTATCTAAGAGG+TGG 0.607399 5_3:+43602542 Msa0813100:CDS
TAAATTGGATATGCAAACAA+TGG 0.608374 5_3:-43601827 None:intergenic
GTCACATACTTGCATCACCA+TGG 0.613036 5_3:+43602370 Msa0813100:CDS
AACACTAGGCCAAGAAACAA+TGG 0.614089 5_3:+43600910 Msa0813100:CDS
ATATCTGCTATCTTAAATGG+TGG 0.622664 5_3:-43600983 None:intergenic
ACAATGGTTGTAACCAATGG+TGG 0.624372 5_3:+43600926 Msa0813100:CDS
ATTACCATGGTACCGTGGCA+AGG 0.629596 5_3:+43602405 Msa0813100:CDS
CCAACCATAGTCACGATCAA+CGG 0.634145 5_3:-43602573 None:intergenic
CAACATGTGTGCCAATGTCA+TGG 0.639198 5_3:-43602610 None:intergenic
TTTGTTTGGAATAGTGGCCA+TGG 0.643837 5_3:+43601309 Msa0813100:intron
GTAGAAGTCCTGGAAAATCA+GGG 0.649940 5_3:+43601971 Msa0813100:CDS
ATGGTATGGAACAAGAATTG+AGG 0.651980 5_3:-43601385 None:intergenic
GTAATTTCTGCGTGTAACCA+TGG 0.658145 5_3:-43602387 None:intergenic
ATTGTTGGGTGAAGAACACA+TGG 0.660332 5_3:+43601026 Msa0813100:CDS
CAGAAATTACCATGGTACCG+TGG 0.699527 5_3:+43602400 Msa0813100:CDS
TAAATGGTGGAGGAGCACTA+GGG 0.705178 5_3:-43600970 None:intergenic
GTTACACGCAGAAATTACCA+TGG 0.733077 5_3:+43602392 Msa0813100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTATAACAAGAAAATT+TGG + chr5_3:43601446-43601465 Msa0813100:intron 10.0%
!! TATAATAATCATTTATAAGA+CGG - chr5_3:43602304-43602323 None:intergenic 10.0%
!!! TTATTTTTAATTTTGCTTTT+TGG + chr5_3:43603155-43603174 Msa0813100:three_prime_UTR 10.0%
!! TTTATTATAACAAGAAAATT+TGG + chr5_3:43601446-43601465 Msa0813100:intron 10.0%
!! TATAATAATCATTTATAAGA+CGG - chr5_3:43602304-43602323 None:intergenic 10.0%
!!! TTATTTTTAATTTTGCTTTT+TGG + chr5_3:43603155-43603174 Msa0813100:three_prime_UTR 10.0%
!! GTTAAAAATATTTCATCTTA+TGG + chr5_3:43600847-43600866 Msa0813100:exon 15.0%
!!! TTTCATTTTTAAATGCATTT+TGG + chr5_3:43602163-43602182 Msa0813100:intron 15.0%
!! TTAGTTAAAGAAATAAAAGT+AGG - chr5_3:43602712-43602731 None:intergenic 15.0%
!! AAGTATTTAATTAGATGAAA+TGG - chr5_3:43602858-43602877 None:intergenic 15.0%
!! GTTAAAAATATTTCATCTTA+TGG + chr5_3:43600847-43600866 Msa0813100:exon 15.0%
!!! TTTCATTTTTAAATGCATTT+TGG + chr5_3:43602163-43602182 Msa0813100:intron 15.0%
!! TTAGTTAAAGAAATAAAAGT+AGG - chr5_3:43602712-43602731 None:intergenic 15.0%
!! AAGTATTTAATTAGATGAAA+TGG - chr5_3:43602858-43602877 None:intergenic 15.0%
!! TATGTTAATGTTATGTCATA+TGG + chr5_3:43601245-43601264 Msa0813100:intron 20.0%
!! AAAAAACTCACCAAATAAAT+TGG - chr5_3:43601845-43601864 None:intergenic 20.0%
!! ATAAACAATTGATTGATTGA+AGG - chr5_3:43602453-43602472 None:intergenic 20.0%
!! AATTGTTTATGTGCATAATT+AGG + chr5_3:43602463-43602482 Msa0813100:intron 20.0%
!! TGTCTACTTTATAAAAAGAA+TGG + chr5_3:43603078-43603097 Msa0813100:three_prime_UTR 20.0%
!! GTCTACTTTATAAAAAGAAT+GGG + chr5_3:43603079-43603098 Msa0813100:three_prime_UTR 20.0%
!! TACTTAGAGACAAAAATATT+TGG + chr5_3:43603128-43603147 Msa0813100:three_prime_UTR 20.0%
!!! GAAATATTTTTAACCTTTTG+TGG - chr5_3:43600841-43600860 None:intergenic 20.0%
!! TATGTTAATGTTATGTCATA+TGG + chr5_3:43601245-43601264 Msa0813100:intron 20.0%
!! AAAAAACTCACCAAATAAAT+TGG - chr5_3:43601845-43601864 None:intergenic 20.0%
!! ATAAACAATTGATTGATTGA+AGG - chr5_3:43602453-43602472 None:intergenic 20.0%
!! AATTGTTTATGTGCATAATT+AGG + chr5_3:43602463-43602482 Msa0813100:intron 20.0%
!! TGTCTACTTTATAAAAAGAA+TGG + chr5_3:43603078-43603097 Msa0813100:three_prime_UTR 20.0%
!! GTCTACTTTATAAAAAGAAT+GGG + chr5_3:43603079-43603098 Msa0813100:three_prime_UTR 20.0%
!! TACTTAGAGACAAAAATATT+TGG + chr5_3:43603128-43603147 Msa0813100:three_prime_UTR 20.0%
! CTAATATCTGCTATCTTAAA+TGG - chr5_3:43600989-43601008 None:intergenic 25.0%
!!! ATCTTTGAGTTTTGTTCTTA+GGG + chr5_3:43601051-43601070 Msa0813100:CDS 25.0%
!!! TTGTTCATGTTTTTGTTTCA+TGG + chr5_3:43601493-43601512 Msa0813100:intron 25.0%
! AACATCAATAAATCACATAC+TGG - chr5_3:43601604-43601623 None:intergenic 25.0%
!! GATTATATGCATAGTTTTTG+TGG + chr5_3:43601653-43601672 Msa0813100:intron 25.0%
! ATCAAATGAAAGTTACTTCA+TGG - chr5_3:43601700-43601719 None:intergenic 25.0%
! ATTATCTTAGTTGACAGAAA+AGG + chr5_3:43601751-43601770 Msa0813100:intron 25.0%
! TAAATTGGATATGCAAACAA+TGG - chr5_3:43601830-43601849 None:intergenic 25.0%
! GTTTGCATATCCAATTTATT+TGG + chr5_3:43601832-43601851 Msa0813100:CDS 25.0%
! GTATAGATAAACGGTAAATT+CGG - chr5_3:43602280-43602299 None:intergenic 25.0%
!!! ATTATATTTTTACCTTGCCA+CGG - chr5_3:43602420-43602439 None:intergenic 25.0%
! TTATGTACCTTAAATCTTGT+TGG + chr5_3:43602489-43602508 Msa0813100:intron 25.0%
! TATGTACCTTAAATCTTGTT+GGG + chr5_3:43602490-43602509 Msa0813100:intron 25.0%
! AATTACTCATGTGTACAATT+TGG + chr5_3:43602516-43602535 Msa0813100:intron 25.0%
! TTTCTTTAACTAATGTCTCA+AGG + chr5_3:43602719-43602738 Msa0813100:intron 25.0%
! TTAATTAGATGAAATGGAAG+TGG - chr5_3:43602852-43602871 None:intergenic 25.0%
!!! CAATGAATAAGTCACTTTTT+TGG + chr5_3:43602965-43602984 Msa0813100:exon 25.0%
! TGTAATGTAGTTACTCTTAA+TGG + chr5_3:43603184-43603203 Msa0813100:three_prime_UTR 25.0%
! CTCTTAATGGAATAATATGT+TGG + chr5_3:43603197-43603216 Msa0813100:three_prime_UTR 25.0%
! CTAATATCTGCTATCTTAAA+TGG - chr5_3:43600989-43601008 None:intergenic 25.0%
!!! ATCTTTGAGTTTTGTTCTTA+GGG + chr5_3:43601051-43601070 Msa0813100:CDS 25.0%
!!! TTGTTCATGTTTTTGTTTCA+TGG + chr5_3:43601493-43601512 Msa0813100:intron 25.0%
! AACATCAATAAATCACATAC+TGG - chr5_3:43601604-43601623 None:intergenic 25.0%
!! GATTATATGCATAGTTTTTG+TGG + chr5_3:43601653-43601672 Msa0813100:intron 25.0%
! ATCAAATGAAAGTTACTTCA+TGG - chr5_3:43601700-43601719 None:intergenic 25.0%
! ATTATCTTAGTTGACAGAAA+AGG + chr5_3:43601751-43601770 Msa0813100:intron 25.0%
! TAAATTGGATATGCAAACAA+TGG - chr5_3:43601830-43601849 None:intergenic 25.0%
! GTTTGCATATCCAATTTATT+TGG + chr5_3:43601832-43601851 Msa0813100:CDS 25.0%
! GTATAGATAAACGGTAAATT+CGG - chr5_3:43602280-43602299 None:intergenic 25.0%
!!! ATTATATTTTTACCTTGCCA+CGG - chr5_3:43602420-43602439 None:intergenic 25.0%
! TTATGTACCTTAAATCTTGT+TGG + chr5_3:43602489-43602508 Msa0813100:intron 25.0%
! TATGTACCTTAAATCTTGTT+GGG + chr5_3:43602490-43602509 Msa0813100:intron 25.0%
! AATTACTCATGTGTACAATT+TGG + chr5_3:43602516-43602535 Msa0813100:intron 25.0%
! TTTCTTTAACTAATGTCTCA+AGG + chr5_3:43602719-43602738 Msa0813100:intron 25.0%
! TTAATTAGATGAAATGGAAG+TGG - chr5_3:43602852-43602871 None:intergenic 25.0%
!!! CAATGAATAAGTCACTTTTT+TGG + chr5_3:43602965-43602984 Msa0813100:exon 25.0%
! TGTAATGTAGTTACTCTTAA+TGG + chr5_3:43603184-43603203 Msa0813100:three_prime_UTR 25.0%
! CTCTTAATGGAATAATATGT+TGG + chr5_3:43603197-43603216 Msa0813100:three_prime_UTR 25.0%
ATATCTGCTATCTTAAATGG+TGG - chr5_3:43600986-43601005 None:intergenic 30.0%
TGCTATTCCAAAACATTGTT+GGG + chr5_3:43601012-43601031 Msa0813100:CDS 30.0%
!!! GATCTTTGAGTTTTGTTCTT+AGG + chr5_3:43601050-43601069 Msa0813100:CDS 30.0%
!!! GGTATTTTTGGCCAATTTAT+TGG + chr5_3:43601125-43601144 Msa0813100:CDS 30.0%
! TTTTGGGCAATTTTTGTTCT+TGG + chr5_3:43601166-43601185 Msa0813100:CDS 30.0%
! TTTTTGTTCTTGGACATGAT+TGG + chr5_3:43601176-43601195 Msa0813100:CDS 30.0%
!! GTAAACCTTGATGTTTTGTT+TGG + chr5_3:43601295-43601314 Msa0813100:intron 30.0%
CTATTCCAAACAAAACATCA+AGG - chr5_3:43601303-43601322 None:intergenic 30.0%
!!! TGATGTTTTGTTTGGAATAG+TGG + chr5_3:43601303-43601322 Msa0813100:intron 30.0%
TTCTTTGGTGAATAACTTTG+TGG + chr5_3:43601347-43601366 Msa0813100:CDS 30.0%
TCTTTGGTGAATAACTTTGT+GGG + chr5_3:43601348-43601367 Msa0813100:CDS 30.0%
GAATTGAGGAATGCAAAATA+TGG - chr5_3:43601374-43601393 None:intergenic 30.0%
TCCTGAAAAAGGAAAAGTTA+TGG - chr5_3:43601519-43601538 None:intergenic 30.0%
AAAACACATCATCAAAACCA+TGG + chr5_3:43601550-43601569 Msa0813100:CDS 30.0%
AAACACATCATCAAAACCAT+GGG + chr5_3:43601551-43601570 Msa0813100:CDS 30.0%
TGTCATGTTTAATGTTTCAG+TGG + chr5_3:43601947-43601966 Msa0813100:intron 30.0%
TGACAATTTCAACAGTTTGT+TGG + chr5_3:43602046-43602065 Msa0813100:intron 30.0%
TAGAGCATGAGAATTAAAAG+TGG - chr5_3:43602117-43602136 None:intergenic 30.0%
!! CTTTTAATTCTCATGCTCTA+TGG + chr5_3:43602117-43602136 Msa0813100:intron 30.0%
GAAAGTAACTTTACCCAATA+GGG - chr5_3:43602147-43602166 None:intergenic 30.0%
TGAAAGTAACTTTACCCAAT+AGG - chr5_3:43602148-43602167 None:intergenic 30.0%
TAAGACGGTGTATAGATAAA+CGG - chr5_3:43602289-43602308 None:intergenic 30.0%
ATTAGACCCAACAAGATTTA+AGG - chr5_3:43602499-43602518 None:intergenic 30.0%
! AGTGATAATGAGGAATTTGA+GGG - chr5_3:43602649-43602668 None:intergenic 30.0%
! AAGTGATAATGAGGAATTTG+AGG - chr5_3:43602650-43602669 None:intergenic 30.0%
TCAAATTCCTCATTATCACT+TGG + chr5_3:43602649-43602668 Msa0813100:CDS 30.0%
TCTGCAATGAGTTAAAAAAG+GGG - chr5_3:43602773-43602792 None:intergenic 30.0%
GTCTGCAATGAGTTAAAAAA+GGG - chr5_3:43602774-43602793 None:intergenic 30.0%
AGTCTGCAATGAGTTAAAAA+AGG - chr5_3:43602775-43602794 None:intergenic 30.0%
! AAAGCAGCAAAACCAATTTT+TGG + chr5_3:43602795-43602814 Msa0813100:CDS 30.0%
TCCAATTCAATCAGATTCTA+CGG + chr5_3:43602991-43603010 Msa0813100:three_prime_UTR 30.0%
! CAGATTCTACGGTTATATTT+TGG + chr5_3:43603002-43603021 Msa0813100:three_prime_UTR 30.0%
ATATCTGCTATCTTAAATGG+TGG - chr5_3:43600986-43601005 None:intergenic 30.0%
TGCTATTCCAAAACATTGTT+GGG + chr5_3:43601012-43601031 Msa0813100:CDS 30.0%
!!! GATCTTTGAGTTTTGTTCTT+AGG + chr5_3:43601050-43601069 Msa0813100:CDS 30.0%
!!! GGTATTTTTGGCCAATTTAT+TGG + chr5_3:43601125-43601144 Msa0813100:CDS 30.0%
! TTTTGGGCAATTTTTGTTCT+TGG + chr5_3:43601166-43601185 Msa0813100:CDS 30.0%
! TTTTTGTTCTTGGACATGAT+TGG + chr5_3:43601176-43601195 Msa0813100:CDS 30.0%
!! GTAAACCTTGATGTTTTGTT+TGG + chr5_3:43601295-43601314 Msa0813100:intron 30.0%
CTATTCCAAACAAAACATCA+AGG - chr5_3:43601303-43601322 None:intergenic 30.0%
!!! TGATGTTTTGTTTGGAATAG+TGG + chr5_3:43601303-43601322 Msa0813100:intron 30.0%
TTCTTTGGTGAATAACTTTG+TGG + chr5_3:43601347-43601366 Msa0813100:CDS 30.0%
TCTTTGGTGAATAACTTTGT+GGG + chr5_3:43601348-43601367 Msa0813100:CDS 30.0%
GAATTGAGGAATGCAAAATA+TGG - chr5_3:43601374-43601393 None:intergenic 30.0%
TCCTGAAAAAGGAAAAGTTA+TGG - chr5_3:43601519-43601538 None:intergenic 30.0%
AAAACACATCATCAAAACCA+TGG + chr5_3:43601550-43601569 Msa0813100:CDS 30.0%
AAACACATCATCAAAACCAT+GGG + chr5_3:43601551-43601570 Msa0813100:CDS 30.0%
TGTCATGTTTAATGTTTCAG+TGG + chr5_3:43601947-43601966 Msa0813100:intron 30.0%
TGACAATTTCAACAGTTTGT+TGG + chr5_3:43602046-43602065 Msa0813100:intron 30.0%
TAGAGCATGAGAATTAAAAG+TGG - chr5_3:43602117-43602136 None:intergenic 30.0%
!! CTTTTAATTCTCATGCTCTA+TGG + chr5_3:43602117-43602136 Msa0813100:intron 30.0%
GAAAGTAACTTTACCCAATA+GGG - chr5_3:43602147-43602166 None:intergenic 30.0%
TGAAAGTAACTTTACCCAAT+AGG - chr5_3:43602148-43602167 None:intergenic 30.0%
TAAGACGGTGTATAGATAAA+CGG - chr5_3:43602289-43602308 None:intergenic 30.0%
ATTAGACCCAACAAGATTTA+AGG - chr5_3:43602499-43602518 None:intergenic 30.0%
! AGTGATAATGAGGAATTTGA+GGG - chr5_3:43602649-43602668 None:intergenic 30.0%
! AAGTGATAATGAGGAATTTG+AGG - chr5_3:43602650-43602669 None:intergenic 30.0%
TCAAATTCCTCATTATCACT+TGG + chr5_3:43602649-43602668 Msa0813100:CDS 30.0%
TCTGCAATGAGTTAAAAAAG+GGG - chr5_3:43602773-43602792 None:intergenic 30.0%
GTCTGCAATGAGTTAAAAAA+GGG - chr5_3:43602774-43602793 None:intergenic 30.0%
AGTCTGCAATGAGTTAAAAA+AGG - chr5_3:43602775-43602794 None:intergenic 30.0%
! AAAGCAGCAAAACCAATTTT+TGG + chr5_3:43602795-43602814 Msa0813100:CDS 30.0%
TCCAATTCAATCAGATTCTA+CGG + chr5_3:43602991-43603010 Msa0813100:three_prime_UTR 30.0%
! CAGATTCTACGGTTATATTT+TGG + chr5_3:43603002-43603021 Msa0813100:three_prime_UTR 30.0%
!!! TTGCTCTTTTTTCGGATATG+TGG - chr5_3:43600892-43600911 None:intergenic 35.0%
! TGGTTACAACCATTGTTTCT+TGG - chr5_3:43600922-43600941 None:intergenic 35.0%
GAAACAATGGTTGTAACCAA+TGG + chr5_3:43600923-43600942 Msa0813100:CDS 35.0%
CTGCTATTCCAAAACATTGT+TGG + chr5_3:43601011-43601030 Msa0813100:CDS 35.0%
! TTCTTCACCCAACAATGTTT+TGG - chr5_3:43601022-43601041 None:intergenic 35.0%
! TTTTGTTCTTAGGGATGTGT+TGG + chr5_3:43601060-43601079 Msa0813100:CDS 35.0%
!! GGTTTGATAGCTGGTATTTT+TGG + chr5_3:43601113-43601132 Msa0813100:CDS 35.0%
! CAATTTATTGGCCTCTTCAA+GGG + chr5_3:43601137-43601156 Msa0813100:CDS 35.0%
! TCTTCAAGGGACAATGTTTT+GGG + chr5_3:43601150-43601169 Msa0813100:CDS 35.0%
ATGGTATGGAACAAGAATTG+AGG - chr5_3:43601388-43601407 None:intergenic 35.0%
TCAATTCTTGTTCCATACCA+TGG + chr5_3:43601387-43601406 Msa0813100:CDS 35.0%
ACTATTTCACTAACCATCCA+TGG - chr5_3:43601407-43601426 None:intergenic 35.0%
! GCCATAACTTTTCCTTTTTC+AGG + chr5_3:43601515-43601534 Msa0813100:intron 35.0%
GTGACTAATTCTCCTGAAAA+AGG - chr5_3:43601530-43601549 None:intergenic 35.0%
GGATATGCAAACAATGGTAA+AGG - chr5_3:43601824-43601843 None:intergenic 35.0%
! GTCACTTCTTTTCTCTCATT+GGG - chr5_3:43602030-43602049 None:intergenic 35.0%
!! TGTCACTTCTTTTCTCTCAT+TGG - chr5_3:43602031-43602050 None:intergenic 35.0%
!! TAAAAGTGGACTAGTTGTGA+AGG - chr5_3:43602103-43602122 None:intergenic 35.0%
CGGTAAATTCGGTAGAATTA+CGG - chr5_3:43602269-43602288 None:intergenic 35.0%
AACTGCAGATATTTGTCATG+TGG + chr5_3:43602338-43602357 Msa0813100:intron 35.0%
ACTCATGTGTACAATTTGGT+AGG + chr5_3:43602520-43602539 Msa0813100:intron 35.0%
TGTGTACAATTTGGTAGGAA+TGG + chr5_3:43602525-43602544 Msa0813100:intron 35.0%
AACAACATTCACCATGACAT+TGG + chr5_3:43602599-43602618 Msa0813100:CDS 35.0%
TCATTATCACTTGGTTGAAG+CGG + chr5_3:43602658-43602677 Msa0813100:CDS 35.0%
CGGTAATAGTCTCCAAAAAT+TGG - chr5_3:43602810-43602829 None:intergenic 35.0%
!!! GTGATGATTTTTCAGGTTCA+CGG - chr5_3:43602830-43602849 None:intergenic 35.0%
CTTATTCATTGTGCTTCTTG+TGG - chr5_3:43602956-43602975 None:intergenic 35.0%
ACCGTAGAATCTGATTGAAT+TGG - chr5_3:43602995-43603014 None:intergenic 35.0%
!!! ACGGTTATATTTTGGAGTTG+TGG + chr5_3:43603010-43603029 Msa0813100:three_prime_UTR 35.0%
! TGTGGTTCATTTTGTAGTTG+TGG + chr5_3:43603028-43603047 Msa0813100:three_prime_UTR 35.0%
TAGTTGTGGTTCATGTTAAC+TGG + chr5_3:43603042-43603061 Msa0813100:three_prime_UTR 35.0%
AGTTGTGGTTCATGTTAACT+GGG + chr5_3:43603043-43603062 Msa0813100:three_prime_UTR 35.0%
AAGTAGCAACTGAATTTACC+AGG - chr5_3:43603113-43603132 None:intergenic 35.0%
!!! TTGCTCTTTTTTCGGATATG+TGG - chr5_3:43600892-43600911 None:intergenic 35.0%
! TGGTTACAACCATTGTTTCT+TGG - chr5_3:43600922-43600941 None:intergenic 35.0%
GAAACAATGGTTGTAACCAA+TGG + chr5_3:43600923-43600942 Msa0813100:CDS 35.0%
CTGCTATTCCAAAACATTGT+TGG + chr5_3:43601011-43601030 Msa0813100:CDS 35.0%
! TTCTTCACCCAACAATGTTT+TGG - chr5_3:43601022-43601041 None:intergenic 35.0%
! TTTTGTTCTTAGGGATGTGT+TGG + chr5_3:43601060-43601079 Msa0813100:CDS 35.0%
!! GGTTTGATAGCTGGTATTTT+TGG + chr5_3:43601113-43601132 Msa0813100:CDS 35.0%
! CAATTTATTGGCCTCTTCAA+GGG + chr5_3:43601137-43601156 Msa0813100:CDS 35.0%
! TCTTCAAGGGACAATGTTTT+GGG + chr5_3:43601150-43601169 Msa0813100:CDS 35.0%
ATGGTATGGAACAAGAATTG+AGG - chr5_3:43601388-43601407 None:intergenic 35.0%
TCAATTCTTGTTCCATACCA+TGG + chr5_3:43601387-43601406 Msa0813100:CDS 35.0%
ACTATTTCACTAACCATCCA+TGG - chr5_3:43601407-43601426 None:intergenic 35.0%
! GCCATAACTTTTCCTTTTTC+AGG + chr5_3:43601515-43601534 Msa0813100:intron 35.0%
GTGACTAATTCTCCTGAAAA+AGG - chr5_3:43601530-43601549 None:intergenic 35.0%
GGATATGCAAACAATGGTAA+AGG - chr5_3:43601824-43601843 None:intergenic 35.0%
! GTCACTTCTTTTCTCTCATT+GGG - chr5_3:43602030-43602049 None:intergenic 35.0%
!! TGTCACTTCTTTTCTCTCAT+TGG - chr5_3:43602031-43602050 None:intergenic 35.0%
!! TAAAAGTGGACTAGTTGTGA+AGG - chr5_3:43602103-43602122 None:intergenic 35.0%
CGGTAAATTCGGTAGAATTA+CGG - chr5_3:43602269-43602288 None:intergenic 35.0%
AACTGCAGATATTTGTCATG+TGG + chr5_3:43602338-43602357 Msa0813100:intron 35.0%
ACTCATGTGTACAATTTGGT+AGG + chr5_3:43602520-43602539 Msa0813100:intron 35.0%
TGTGTACAATTTGGTAGGAA+TGG + chr5_3:43602525-43602544 Msa0813100:intron 35.0%
AACAACATTCACCATGACAT+TGG + chr5_3:43602599-43602618 Msa0813100:CDS 35.0%
TCATTATCACTTGGTTGAAG+CGG + chr5_3:43602658-43602677 Msa0813100:CDS 35.0%
CGGTAATAGTCTCCAAAAAT+TGG - chr5_3:43602810-43602829 None:intergenic 35.0%
!!! GTGATGATTTTTCAGGTTCA+CGG - chr5_3:43602830-43602849 None:intergenic 35.0%
CTTATTCATTGTGCTTCTTG+TGG - chr5_3:43602956-43602975 None:intergenic 35.0%
ACCGTAGAATCTGATTGAAT+TGG - chr5_3:43602995-43603014 None:intergenic 35.0%
!!! ACGGTTATATTTTGGAGTTG+TGG + chr5_3:43603010-43603029 Msa0813100:three_prime_UTR 35.0%
! TGTGGTTCATTTTGTAGTTG+TGG + chr5_3:43603028-43603047 Msa0813100:three_prime_UTR 35.0%
TAGTTGTGGTTCATGTTAAC+TGG + chr5_3:43603042-43603061 Msa0813100:three_prime_UTR 35.0%
AGTTGTGGTTCATGTTAACT+GGG + chr5_3:43603043-43603062 Msa0813100:three_prime_UTR 35.0%
AAGTAGCAACTGAATTTACC+AGG - chr5_3:43603113-43603132 None:intergenic 35.0%
TTCGGATATGTGGTGAATAG+AGG - chr5_3:43600882-43600901 None:intergenic 40.0%
TCCGAAAAAAGAGCAACACT+AGG + chr5_3:43600896-43600915 Msa0813100:CDS 40.0%
!!! GCCTAGTGTTGCTCTTTTTT+CGG - chr5_3:43600900-43600919 None:intergenic 40.0%
AACACTAGGCCAAGAAACAA+TGG + chr5_3:43600910-43600929 Msa0813100:CDS 40.0%
ACAATGGTTGTAACCAATGG+TGG + chr5_3:43600926-43600945 Msa0813100:CDS 40.0%
CACTAGGGTCAAATTCACTA+TGG - chr5_3:43600958-43600977 None:intergenic 40.0%
TCTGCTATCTTAAATGGTGG+AGG - chr5_3:43600983-43601002 None:intergenic 40.0%
ATTGTTGGGTGAAGAACACA+TGG + chr5_3:43601026-43601045 Msa0813100:CDS 40.0%
! CATTGATGGTAGCTGCAATT+CGG + chr5_3:43601092-43601111 Msa0813100:CDS 40.0%
CCTTGAAGAGGCCAATAAAT+TGG - chr5_3:43601139-43601158 None:intergenic 40.0%
! CCAATTTATTGGCCTCTTCA+AGG + chr5_3:43601136-43601155 Msa0813100:CDS 40.0%
CAAAACATTGTCCCTTGAAG+AGG - chr5_3:43601151-43601170 None:intergenic 40.0%
! CTCTTCAAGGGACAATGTTT+TGG + chr5_3:43601149-43601168 Msa0813100:CDS 40.0%
! TTTGTTTGGAATAGTGGCCA+TGG + chr5_3:43601309-43601328 Msa0813100:intron 40.0%
AAGCTTCTCAGACAGTTCTT+TGG + chr5_3:43601332-43601351 Msa0813100:CDS 40.0%
TTCTTGTTCCATACCATGGA+TGG + chr5_3:43601391-43601410 Msa0813100:CDS 40.0%
TTCACTAACCATCCATGGTA+TGG - chr5_3:43601402-43601421 None:intergenic 40.0%
AAACCATGGGAATGTTGAGA+AGG + chr5_3:43601564-43601583 Msa0813100:CDS 40.0%
ATGTTGAGAAGGATGAGTCA+TGG + chr5_3:43601575-43601594 Msa0813100:CDS 40.0%
TGTTGAGAAGGATGAGTCAT+GGG + chr5_3:43601576-43601595 Msa0813100:CDS 40.0%
TTGTGGTTTAGTCCCAACAA+AGG + chr5_3:43601670-43601689 Msa0813100:intron 40.0%
TGTGGTTTAGTCCCAACAAA+GGG + chr5_3:43601671-43601690 Msa0813100:intron 40.0%
AGTAGAAGTCCTGGAAAATC+AGG + chr5_3:43601970-43601989 Msa0813100:CDS 40.0%
GTAGAAGTCCTGGAAAATCA+GGG + chr5_3:43601971-43601990 Msa0813100:CDS 40.0%
GTAATTTCTGCGTGTAACCA+TGG - chr5_3:43602390-43602409 None:intergenic 40.0%
GTTACACGCAGAAATTACCA+TGG + chr5_3:43602392-43602411 Msa0813100:CDS 40.0%
TAGGAATGGAGCTATCTAAG+AGG + chr5_3:43602539-43602558 Msa0813100:intron 40.0%
! GCTTCAACCAAGTGATAATG+AGG - chr5_3:43602659-43602678 None:intergenic 40.0%
!! GGAAGTGGTGATGATTTTTC+AGG - chr5_3:43602837-43602856 None:intergenic 40.0%
GATCACTTTGTTAGTGACAC+TGG + chr5_3:43602897-43602916 Msa0813100:CDS 40.0%
TTCGGATATGTGGTGAATAG+AGG - chr5_3:43600882-43600901 None:intergenic 40.0%
TCCGAAAAAAGAGCAACACT+AGG + chr5_3:43600896-43600915 Msa0813100:CDS 40.0%
!!! GCCTAGTGTTGCTCTTTTTT+CGG - chr5_3:43600900-43600919 None:intergenic 40.0%
AACACTAGGCCAAGAAACAA+TGG + chr5_3:43600910-43600929 Msa0813100:CDS 40.0%
ACAATGGTTGTAACCAATGG+TGG + chr5_3:43600926-43600945 Msa0813100:CDS 40.0%
CACTAGGGTCAAATTCACTA+TGG - chr5_3:43600958-43600977 None:intergenic 40.0%
TCTGCTATCTTAAATGGTGG+AGG - chr5_3:43600983-43601002 None:intergenic 40.0%
ATTGTTGGGTGAAGAACACA+TGG + chr5_3:43601026-43601045 Msa0813100:CDS 40.0%
! CATTGATGGTAGCTGCAATT+CGG + chr5_3:43601092-43601111 Msa0813100:CDS 40.0%
CCTTGAAGAGGCCAATAAAT+TGG - chr5_3:43601139-43601158 None:intergenic 40.0%
! CCAATTTATTGGCCTCTTCA+AGG + chr5_3:43601136-43601155 Msa0813100:CDS 40.0%
CAAAACATTGTCCCTTGAAG+AGG - chr5_3:43601151-43601170 None:intergenic 40.0%
! CTCTTCAAGGGACAATGTTT+TGG + chr5_3:43601149-43601168 Msa0813100:CDS 40.0%
! TTTGTTTGGAATAGTGGCCA+TGG + chr5_3:43601309-43601328 Msa0813100:intron 40.0%
AAGCTTCTCAGACAGTTCTT+TGG + chr5_3:43601332-43601351 Msa0813100:CDS 40.0%
TTCTTGTTCCATACCATGGA+TGG + chr5_3:43601391-43601410 Msa0813100:CDS 40.0%
TTCACTAACCATCCATGGTA+TGG - chr5_3:43601402-43601421 None:intergenic 40.0%
AAACCATGGGAATGTTGAGA+AGG + chr5_3:43601564-43601583 Msa0813100:CDS 40.0%
ATGTTGAGAAGGATGAGTCA+TGG + chr5_3:43601575-43601594 Msa0813100:CDS 40.0%
TGTTGAGAAGGATGAGTCAT+GGG + chr5_3:43601576-43601595 Msa0813100:CDS 40.0%
TTGTGGTTTAGTCCCAACAA+AGG + chr5_3:43601670-43601689 Msa0813100:intron 40.0%
TGTGGTTTAGTCCCAACAAA+GGG + chr5_3:43601671-43601690 Msa0813100:intron 40.0%
AGTAGAAGTCCTGGAAAATC+AGG + chr5_3:43601970-43601989 Msa0813100:CDS 40.0%
GTAGAAGTCCTGGAAAATCA+GGG + chr5_3:43601971-43601990 Msa0813100:CDS 40.0%
GTAATTTCTGCGTGTAACCA+TGG - chr5_3:43602390-43602409 None:intergenic 40.0%
GTTACACGCAGAAATTACCA+TGG + chr5_3:43602392-43602411 Msa0813100:CDS 40.0%
TAGGAATGGAGCTATCTAAG+AGG + chr5_3:43602539-43602558 Msa0813100:intron 40.0%
! GCTTCAACCAAGTGATAATG+AGG - chr5_3:43602659-43602678 None:intergenic 40.0%
!! GGAAGTGGTGATGATTTTTC+AGG - chr5_3:43602837-43602856 None:intergenic 40.0%
GATCACTTTGTTAGTGACAC+TGG + chr5_3:43602897-43602916 Msa0813100:CDS 40.0%
ACTATGGTTGTAGCCACCAT+TGG - chr5_3:43600942-43600961 None:intergenic 45.0%
!! TAAATGGTGGAGGAGCACTA+GGG - chr5_3:43600973-43600992 None:intergenic 45.0%
!! TTAAATGGTGGAGGAGCACT+AGG - chr5_3:43600974-43600993 None:intergenic 45.0%
TGTTCTTAGGGATGTGTTGG+TGG + chr5_3:43601063-43601082 Msa0813100:CDS 45.0%
! CTGCAATTCGGTTTGATAGC+TGG + chr5_3:43601104-43601123 Msa0813100:CDS 45.0%
AACTGTCTGAGAAGCTTCCA+TGG - chr5_3:43601329-43601348 None:intergenic 45.0%
CATCCTTCTCAACATTCCCA+TGG - chr5_3:43601570-43601589 None:intergenic 45.0%
GTGGTTTAGTCCCAACAAAG+GGG + chr5_3:43601672-43601691 Msa0813100:intron 45.0%
CTTCATGGTTCCCCTTTGTT+GGG - chr5_3:43601685-43601704 None:intergenic 45.0%
ACTTCATGGTTCCCCTTTGT+TGG - chr5_3:43601686-43601705 None:intergenic 45.0%
TTTCAGTGGAGTAGAAGTCC+TGG + chr5_3:43601961-43601980 Msa0813100:intron 45.0%
! AAGTGTGACCCTGATTTTCC+AGG - chr5_3:43601982-43602001 None:intergenic 45.0%
TGCTCTATGGAGTTCCCTAT+TGG + chr5_3:43602130-43602149 Msa0813100:intron 45.0%
GCTCTATGGAGTTCCCTATT+GGG + chr5_3:43602131-43602150 Msa0813100:intron 45.0%
GTCACATACTTGCATCACCA+TGG + chr5_3:43602370-43602389 Msa0813100:CDS 45.0%
CAGAAATTACCATGGTACCG+TGG + chr5_3:43602400-43602419 Msa0813100:CDS 45.0%
GAATGGAGCTATCTAAGAGG+TGG + chr5_3:43602542-43602561 Msa0813100:CDS 45.0%
ACAACCGTTGATCGTGACTA+TGG + chr5_3:43602569-43602588 Msa0813100:CDS 45.0%
CCAACCATAGTCACGATCAA+CGG - chr5_3:43602576-43602595 None:intergenic 45.0%
CAACATGTGTGCCAATGTCA+TGG - chr5_3:43602613-43602632 None:intergenic 45.0%
GTTGAAGCGGTAATCACTTG+CGG + chr5_3:43602671-43602690 Msa0813100:intron 45.0%
AAAGAATGGGTCTCATTGCC+TGG + chr5_3:43603092-43603111 Msa0813100:three_prime_UTR 45.0%
ACTATGGTTGTAGCCACCAT+TGG - chr5_3:43600942-43600961 None:intergenic 45.0%
!! TAAATGGTGGAGGAGCACTA+GGG - chr5_3:43600973-43600992 None:intergenic 45.0%
!! TTAAATGGTGGAGGAGCACT+AGG - chr5_3:43600974-43600993 None:intergenic 45.0%
TGTTCTTAGGGATGTGTTGG+TGG + chr5_3:43601063-43601082 Msa0813100:CDS 45.0%
! CTGCAATTCGGTTTGATAGC+TGG + chr5_3:43601104-43601123 Msa0813100:CDS 45.0%
AACTGTCTGAGAAGCTTCCA+TGG - chr5_3:43601329-43601348 None:intergenic 45.0%
CATCCTTCTCAACATTCCCA+TGG - chr5_3:43601570-43601589 None:intergenic 45.0%
GTGGTTTAGTCCCAACAAAG+GGG + chr5_3:43601672-43601691 Msa0813100:intron 45.0%
CTTCATGGTTCCCCTTTGTT+GGG - chr5_3:43601685-43601704 None:intergenic 45.0%
ACTTCATGGTTCCCCTTTGT+TGG - chr5_3:43601686-43601705 None:intergenic 45.0%
TTTCAGTGGAGTAGAAGTCC+TGG + chr5_3:43601961-43601980 Msa0813100:intron 45.0%
! AAGTGTGACCCTGATTTTCC+AGG - chr5_3:43601982-43602001 None:intergenic 45.0%
TGCTCTATGGAGTTCCCTAT+TGG + chr5_3:43602130-43602149 Msa0813100:intron 45.0%
GCTCTATGGAGTTCCCTATT+GGG + chr5_3:43602131-43602150 Msa0813100:intron 45.0%
GTCACATACTTGCATCACCA+TGG + chr5_3:43602370-43602389 Msa0813100:CDS 45.0%
CAGAAATTACCATGGTACCG+TGG + chr5_3:43602400-43602419 Msa0813100:CDS 45.0%
GAATGGAGCTATCTAAGAGG+TGG + chr5_3:43602542-43602561 Msa0813100:CDS 45.0%
ACAACCGTTGATCGTGACTA+TGG + chr5_3:43602569-43602588 Msa0813100:CDS 45.0%
CCAACCATAGTCACGATCAA+CGG - chr5_3:43602576-43602595 None:intergenic 45.0%
CAACATGTGTGCCAATGTCA+TGG - chr5_3:43602613-43602632 None:intergenic 45.0%
GTTGAAGCGGTAATCACTTG+CGG + chr5_3:43602671-43602690 Msa0813100:intron 45.0%
AAAGAATGGGTCTCATTGCC+TGG + chr5_3:43603092-43603111 Msa0813100:three_prime_UTR 45.0%
!! ATTATTTAATTATATTATCA+TGG - chr5_3:43601902-43601921 None:intergenic 5.0%
!! ATTATTTAATTATATTATCA+TGG - chr5_3:43601902-43601921 None:intergenic 5.0%
!! GTTGGTGGTTGCTGCATTGA+TGG + chr5_3:43601078-43601097 Msa0813100:CDS 50.0%
GGTGAGAACAAGTCGCTACA+GGG - chr5_3:43602009-43602028 None:intergenic 50.0%
ATTACCATGGTACCGTGGCA+AGG + chr5_3:43602405-43602424 Msa0813100:CDS 50.0%
TTTACCTTGCCACGGTACCA+TGG - chr5_3:43602412-43602431 None:intergenic 50.0%
CCGTTGATCGTGACTATGGT+TGG + chr5_3:43602573-43602592 Msa0813100:CDS 50.0%
TTGTGCTTCTTGTGGAGCTG+AGG - chr5_3:43602948-43602967 None:intergenic 50.0%
!! GTTGGTGGTTGCTGCATTGA+TGG + chr5_3:43601078-43601097 Msa0813100:CDS 50.0%
GGTGAGAACAAGTCGCTACA+GGG - chr5_3:43602009-43602028 None:intergenic 50.0%
ATTACCATGGTACCGTGGCA+AGG + chr5_3:43602405-43602424 Msa0813100:CDS 50.0%
TTTACCTTGCCACGGTACCA+TGG - chr5_3:43602412-43602431 None:intergenic 50.0%
CCGTTGATCGTGACTATGGT+TGG + chr5_3:43602573-43602592 Msa0813100:CDS 50.0%
TTGTGCTTCTTGTGGAGCTG+AGG - chr5_3:43602948-43602967 None:intergenic 50.0%
GGGTGAGAACAAGTCGCTAC+AGG - chr5_3:43602010-43602029 None:intergenic 55.0%
GGGTGAGAACAAGTCGCTAC+AGG - chr5_3:43602010-43602029 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 43600841 43603283 43600841 ID=Msa0813100;Name=Msa0813100
chr5_3 mRNA 43600841 43603283 43600841 ID=Msa0813100-mRNA-1;Parent=Msa0813100;Name=Msa0813100-mRNA-1;_AED=0.06;_eAED=0.06;_QI=25|0.85|0.87|1|1|1|8|309|358
chr5_3 exon 43600841 43601197 43600841 ID=Msa0813100-mRNA-1:exon:13411;Parent=Msa0813100-mRNA-1
chr5_3 exon 43601323 43601412 43601323 ID=Msa0813100-mRNA-1:exon:13412;Parent=Msa0813100-mRNA-1
chr5_3 exon 43601537 43601603 43601537 ID=Msa0813100-mRNA-1:exon:13413;Parent=Msa0813100-mRNA-1
chr5_3 exon 43601761 43601853 43601761 ID=Msa0813100-mRNA-1:exon:13414;Parent=Msa0813100-mRNA-1
chr5_3 exon 43601967 43602059 43601967 ID=Msa0813100-mRNA-1:exon:13415;Parent=Msa0813100-mRNA-1
chr5_3 exon 43602346 43602426 43602346 ID=Msa0813100-mRNA-1:exon:13416;Parent=Msa0813100-mRNA-1
chr5_3 exon 43602542 43602679 43602542 ID=Msa0813100-mRNA-1:exon:13417;Parent=Msa0813100-mRNA-1
chr5_3 exon 43602792 43603283 43602792 ID=Msa0813100-mRNA-1:exon:13418;Parent=Msa0813100-mRNA-1
chr5_3 five_prime_UTR 43600841 43600865 43600841 ID=Msa0813100-mRNA-1:five_prime_utr;Parent=Msa0813100-mRNA-1
chr5_3 CDS 43600866 43601197 43600866 ID=Msa0813100-mRNA-1:cds;Parent=Msa0813100-mRNA-1
chr5_3 CDS 43601323 43601412 43601323 ID=Msa0813100-mRNA-1:cds;Parent=Msa0813100-mRNA-1
chr5_3 CDS 43601537 43601603 43601537 ID=Msa0813100-mRNA-1:cds;Parent=Msa0813100-mRNA-1
chr5_3 CDS 43601761 43601853 43601761 ID=Msa0813100-mRNA-1:cds;Parent=Msa0813100-mRNA-1
chr5_3 CDS 43601967 43602059 43601967 ID=Msa0813100-mRNA-1:cds;Parent=Msa0813100-mRNA-1
chr5_3 CDS 43602346 43602426 43602346 ID=Msa0813100-mRNA-1:cds;Parent=Msa0813100-mRNA-1
chr5_3 CDS 43602542 43602679 43602542 ID=Msa0813100-mRNA-1:cds;Parent=Msa0813100-mRNA-1
chr5_3 CDS 43602792 43602974 43602792 ID=Msa0813100-mRNA-1:cds;Parent=Msa0813100-mRNA-1
chr5_3 three_prime_UTR 43602975 43603283 43602975 ID=Msa0813100-mRNA-1:three_prime_utr;Parent=Msa0813100-mRNA-1
Gene Sequence

>Msa0813100

ATGGCTATATCAACCTCTATTCACCACATATCCGAAAAAAGAGCAACACTAGGCCAAGAAACAATGGTTGTAACCAATGGTGGCTACAACCATAGTGAATTTGACCCTAGTGCTCCTCCACCATTTAAGATAGCAGATATTAGAGCTGCTATTCCAAAACATTGTTGGGTGAAGAACACATGGAGATCTTTGAGTTTTGTTCTTAGGGATGTGTTGGTGGTTGCTGCATTGATGGTAGCTGCAATTCGGTTTGATAGCTGGTATTTTTGGCCAATTTATTGGCCTCTTCAAGGGACAATGTTTTGGGCAATTTTTGTTCTTGGACATGATTGTGGCCATGGAAGCTTCTCAGACAGTTCTTTGGTGAATAACTTTGTGGGCCATATTTTGCATTCCTCAATTCTTGTTCCATACCATGGATGGAGAATTAGTCACAAAACACATCATCAAAACCATGGGAATGTTGAGAAGGATGAGTCATGGGTTCCATTGACAGAAAAGGTTTACAAGAATCTAGACAACATGACAAAATTTGTGAGATTCACAGTGCCTTTACCATTGTTTGCATATCCAATTTATTTGTGGAGTAGAAGTCCTGGAAAATCAGGGTCACACTTTCATCCCTGTAGCGACTTGTTCTCACCCAATGAGAGAAAAGAAGTGACAATTTCAACAATATTTGTCATGTGGTTAGATTTTGTCACATACTTGCATCACCATGGTTACACGCAGAAATTACCATGGTACCGTGGCAAGGAATGGAGCTATCTAAGAGGTGGACTTACAACCGTTGATCGTGACTATGGTTGGATTAACAACATTCACCATGACATTGGCACACATGTTGTTCATCATCTTTTCCCTCAAATTCCTCATTATCACTTGGTTGAAGCGACTAAAGCAGCAAAACCAATTTTTGGAGACTATTACCGTGAACCTGAAAAATCATCACCACTTCCATTTCATCTAATTAAATACTTACTACAAAGTATGAAGCAAGATCACTTTGTTAGTGACACTGGAGATGTTGTCTTTTATCAAACTGATCCTCAGCTCCACAAGAAGCACAATGAATAA
Protein sequence

>Msa0813100

MAISTSIHHISEKRATLGQETMVVTNGGYNHSEFDPSAPPPFKIADIRAAIPKHCWVKNTWRSLSFVLRDVLVVAALMVAAIRFDSWYFWPIYWPLQGTMFWAIFVLGHDCGHGSFSDSSLVNNFVGHILHSSILVPYHGWRISHKTHHQNHGNVEKDESWVPLTEKVYKNLDNMTKFVRFTVPLPLFAYPIYLWSRSPGKSGSHFHPCSDLFSPNERKEVTISTIFVMWLDFVTYLHHHGYTQKLPWYRGKEWSYLRGGLTTVDRDYGWINNIHHDIGTHVVHHLFPQIPHYHLVEATKAAKPIFGDYYREPEKSSPLPFHLIKYLLQSMKQDHFVSDTGDVVFYQTDPQLHKKHNE*