Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734950 | RHN56691.1 | 92.361 | 144 | 9 | 2 | 21 | 163 | 25 | 167 | 4.85e-63 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734950 | sp|Q9C5T3|WRK26_ARATH | 61.429 | 70 | 21 | 2 | 52 | 120 | 5 | 69 | 1.28e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734950 | A0A396HVW9 | 92.361 | 144 | 9 | 2 | 21 | 163 | 25 | 167 | 2.31e-63 | 214 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051480 | Msa0734950 | 0.804270 | 2.341109e-49 | -8.615850e-47 |
| Msa0734950 | Msa0848440 | 0.851259 | 9.968797e-61 | -8.615850e-47 |
| Msa0734950 | Msa1074720 | 0.826124 | 3.221531e-54 | -8.615850e-47 |
| Msa0734950 | Msa1453600 | 0.811167 | 8.015742e-51 | -8.615850e-47 |
| Msa0146200 | Msa0734950 | 0.801526 | 8.637897e-49 | -8.615850e-47 |
| Msa0378910 | Msa0734950 | 0.804370 | 2.232013e-49 | -8.615850e-47 |
| Msa0438070 | Msa0734950 | 0.804133 | 2.500330e-49 | -8.615850e-47 |
| Msa0474860 | Msa0734950 | 0.800303 | 1.535365e-48 | -8.615850e-47 |
| Msa0481770 | Msa0734950 | 0.812733 | 3.655023e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734950 | MtrunA17_Chr5g0432161 | 92.361 | 144 | 9 | 2 | 21 | 163 | 25 | 167 | 4.46e-67 | 214 |
| Msa0734950 | MtrunA17_Chr3g0106491 | 51.748 | 143 | 47 | 5 | 33 | 156 | 3 | 142 | 5.82e-20 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734950 | AT5G07100.1 | 61.429 | 70 | 21 | 2 | 52 | 120 | 5 | 69 | 1.31e-13 | 67.8 |
Find 41 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATAAATGCTTATAAAAT+TGG | 0.166127 | 5_1:-49894963 | None:intergenic |
| ATAAGCATTTATTGCATGTT+TGG | 0.314286 | 5_1:+49894971 | Msa0734950:CDS |
| AAGTAAGAAGAAGGAGAAAC+AGG | 0.327987 | 5_1:-49894125 | None:intergenic |
| CAGCAGCAGGCCCTTGTTGT+TGG | 0.337044 | 5_1:-49894876 | None:intergenic |
| CTGCTCAAAGCAACTACAAT+TGG | 0.363470 | 5_1:+49894797 | Msa0734950:CDS |
| AGCAGCAGGCCCTTGTTGTT+GGG | 0.372679 | 5_1:-49894875 | None:intergenic |
| TTGGAAGAGTTAAGCATAAC+AGG | 0.378565 | 5_1:-49894191 | None:intergenic |
| CAGCAGAAGGAGAAGCTAAA+AGG | 0.400048 | 5_1:-49894019 | None:intergenic |
| TCTTACTTTGCTATTCCTCC+TGG | 0.408483 | 5_1:+49894140 | Msa0734950:CDS |
| CATAAGAAAGAGAAGAGAAA+AGG | 0.414080 | 5_1:-49893886 | None:intergenic |
| GCAGCAAAAGCACCAGTTGT+AGG | 0.442196 | 5_1:-49894778 | None:intergenic |
| GGTGACAAAGGCAAAGAAGG+AGG | 0.447096 | 5_1:-49894098 | None:intergenic |
| GGAGGTGACAAAGGCAAAGA+AGG | 0.447183 | 5_1:-49894101 | None:intergenic |
| GGAGAATCAAGAAGGTCAGC+AGG | 0.448810 | 5_1:-49894170 | None:intergenic |
| CAGATGATAATAACAATTCA+AGG | 0.459469 | 5_1:+49894048 | Msa0734950:CDS |
| GGAATAGCAAAGTAAGAAGA+AGG | 0.472115 | 5_1:-49894134 | None:intergenic |
| GAGAAAGTTGTTGACATGAA+AGG | 0.476955 | 5_1:-49893993 | None:intergenic |
| TTTCAATCATCAACTGTTGG+TGG | 0.485570 | 5_1:+49894919 | Msa0734950:CDS |
| AGAAAGTTGTTGACATGAAA+GGG | 0.492570 | 5_1:-49893992 | None:intergenic |
| ATAAGAAAGAGAAGAGAAAA+GGG | 0.518787 | 5_1:-49893885 | None:intergenic |
| GGGGAATCAGCAAATGAGAA+AGG | 0.544170 | 5_1:+49894834 | Msa0734950:CDS |
| GTGGATGCAGTAACAGCAGC+AGG | 0.546307 | 5_1:-49894889 | None:intergenic |
| AGGTCAGCAGGGCTTAAACC+AGG | 0.559224 | 5_1:-49894158 | None:intergenic |
| GTGACAAAGGCAAAGAAGGA+GGG | 0.561545 | 5_1:-49894097 | None:intergenic |
| TGATGATTGAAAAGTTGTTG+TGG | 0.568622 | 5_1:-49894908 | None:intergenic |
| AATTGGATGAACAATTCTGA+GGG | 0.569230 | 5_1:+49894814 | Msa0734950:CDS |
| CAATTGGATGAACAATTCTG+AGG | 0.572186 | 5_1:+49894813 | Msa0734950:CDS |
| AAAGCACCAGTTGTAGGTGA+TGG | 0.572239 | 5_1:-49894772 | None:intergenic |
| TGACAAAGGCAAAGAAGGAG+GGG | 0.573076 | 5_1:-49894096 | None:intergenic |
| AGATGATAATAACAATTCAA+GGG | 0.581933 | 5_1:+49894049 | Msa0734950:CDS |
| AGTAAGAAGAAGGAGAAACA+GGG | 0.582152 | 5_1:-49894124 | None:intergenic |
| TAAGAAGAAGGAGAAACAGG+GGG | 0.597289 | 5_1:-49894122 | None:intergenic |
| AGAAAGAGAAGAGAAAAGGG+TGG | 0.602299 | 5_1:-49893882 | None:intergenic |
| GCATAACAGGAGAATCAAGA+AGG | 0.606162 | 5_1:-49894178 | None:intergenic |
| GAGAATCAAGAAGGTCAGCA+GGG | 0.615872 | 5_1:-49894169 | None:intergenic |
| TCATCTGAAGAAGCAGCAGA+AGG | 0.624295 | 5_1:-49894032 | None:intergenic |
| GATGATAATAACAATTCAAG+GGG | 0.636553 | 5_1:+49894050 | Msa0734950:CDS |
| GTAAGAAGAAGGAGAAACAG+GGG | 0.638139 | 5_1:-49894123 | None:intergenic |
| GACAAAGGCAAAGAAGGAGG+GGG | 0.657084 | 5_1:-49894095 | None:intergenic |
| ATTGGATGAACAATTCTGAG+GGG | 0.734397 | 5_1:+49894815 | Msa0734950:CDS |
| TCAGCAGGGCTTAAACCAGG+AGG | 0.737654 | 5_1:-49894155 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTTTAATCAATTGA+AGG | + | chr5_1:49894621-49894640 | Msa0734950:intron | 10.0% |
| !!! | ATTTATTTTTAATCAATTGA+AGG | + | chr5_1:49894621-49894640 | Msa0734950:intron | 10.0% |
| !!! | TTTTTTTTTGTTTTTGGTTT+TGG | - | chr5_1:49893856-49893875 | None:intergenic | 15.0% |
| !!! | TGAAGTTTTTTTTTTGTTTT+TGG | - | chr5_1:49893862-49893881 | None:intergenic | 15.0% |
| !!! | TTTATTTGTTTTTTTTGACA+TGG | + | chr5_1:49894306-49894325 | Msa0734950:intron | 15.0% |
| !!! | TTATTTGTTTTTTTTGACAT+GGG | + | chr5_1:49894307-49894326 | Msa0734950:intron | 15.0% |
| !!! | CTTTAGTTTTTTTTTTTTGT+TGG | + | chr5_1:49894659-49894678 | Msa0734950:intron | 15.0% |
| !!! | TTTTTTTTTGTTTTTGGTTT+TGG | - | chr5_1:49893856-49893875 | None:intergenic | 15.0% |
| !!! | TGAAGTTTTTTTTTTGTTTT+TGG | - | chr5_1:49893862-49893881 | None:intergenic | 15.0% |
| !!! | TTTATTTGTTTTTTTTGACA+TGG | + | chr5_1:49894306-49894325 | Msa0734950:intron | 15.0% |
| !!! | TTATTTGTTTTTTTTGACAT+GGG | + | chr5_1:49894307-49894326 | Msa0734950:intron | 15.0% |
| !!! | CTTTAGTTTTTTTTTTTTGT+TGG | + | chr5_1:49894659-49894678 | Msa0734950:intron | 15.0% |
| !!! | AAAATTTTGATGTTGAGAAA+TGG | - | chr5_1:49893833-49893852 | None:intergenic | 20.0% |
| !! | AGATGATAATAACAATTCAA+GGG | + | chr5_1:49894049-49894068 | Msa0734950:CDS | 20.0% |
| !! | AAAATGAAAGAAACTAACAT+TGG | - | chr5_1:49894213-49894232 | None:intergenic | 20.0% |
| !!! | TTTTTTTGACATATGTTCAA+TGG | + | chr5_1:49894573-49894592 | Msa0734950:intron | 20.0% |
| !! | GCAATAAATGCTTATAAAAT+TGG | - | chr5_1:49894966-49894985 | None:intergenic | 20.0% |
| !!! | AAAATTTTGATGTTGAGAAA+TGG | - | chr5_1:49893833-49893852 | None:intergenic | 20.0% |
| !! | AGATGATAATAACAATTCAA+GGG | + | chr5_1:49894049-49894068 | Msa0734950:CDS | 20.0% |
| !! | AAAATGAAAGAAACTAACAT+TGG | - | chr5_1:49894213-49894232 | None:intergenic | 20.0% |
| !!! | TTTTTTTGACATATGTTCAA+TGG | + | chr5_1:49894573-49894592 | Msa0734950:intron | 20.0% |
| !! | GCAATAAATGCTTATAAAAT+TGG | - | chr5_1:49894966-49894985 | None:intergenic | 20.0% |
| ! | ATAAGAAAGAGAAGAGAAAA+GGG | - | chr5_1:49893888-49893907 | None:intergenic | 25.0% |
| ! | CAGATGATAATAACAATTCA+AGG | + | chr5_1:49894048-49894067 | Msa0734950:CDS | 25.0% |
| ! | GATGATAATAACAATTCAAG+GGG | + | chr5_1:49894050-49894069 | Msa0734950:CDS | 25.0% |
| !! | TTTTCATCATCTATGTTTCA+TGG | + | chr5_1:49894340-49894359 | Msa0734950:intron | 25.0% |
| ! | TTTCATCATCTATGTTTCAT+GGG | + | chr5_1:49894341-49894360 | Msa0734950:intron | 25.0% |
| !!! | TGAAGTTTGAACATGTTTTT+TGG | + | chr5_1:49894380-49894399 | Msa0734950:intron | 25.0% |
| !!! | AAGATTGTTTGTTTTGTGTT+TGG | + | chr5_1:49894448-49894467 | Msa0734950:intron | 25.0% |
| ! | TAGTCAACTCTTGTAAAAAA+AGG | - | chr5_1:49894539-49894558 | None:intergenic | 25.0% |
| ! | TAATGCTGTTACTGAATTTA+TGG | + | chr5_1:49894706-49894725 | Msa0734950:intron | 25.0% |
| ! | AATGCTGTTACTGAATTTAT+GGG | + | chr5_1:49894707-49894726 | Msa0734950:intron | 25.0% |
| ! | ATAAGCATTTATTGCATGTT+TGG | + | chr5_1:49894971-49894990 | Msa0734950:CDS | 25.0% |
| ! | ATAAGAAAGAGAAGAGAAAA+GGG | - | chr5_1:49893888-49893907 | None:intergenic | 25.0% |
| ! | CAGATGATAATAACAATTCA+AGG | + | chr5_1:49894048-49894067 | Msa0734950:CDS | 25.0% |
| ! | GATGATAATAACAATTCAAG+GGG | + | chr5_1:49894050-49894069 | Msa0734950:CDS | 25.0% |
| !! | TTTTCATCATCTATGTTTCA+TGG | + | chr5_1:49894340-49894359 | Msa0734950:intron | 25.0% |
| ! | TTTCATCATCTATGTTTCAT+GGG | + | chr5_1:49894341-49894360 | Msa0734950:intron | 25.0% |
| !!! | TGAAGTTTGAACATGTTTTT+TGG | + | chr5_1:49894380-49894399 | Msa0734950:intron | 25.0% |
| !!! | AAGATTGTTTGTTTTGTGTT+TGG | + | chr5_1:49894448-49894467 | Msa0734950:intron | 25.0% |
| ! | TAGTCAACTCTTGTAAAAAA+AGG | - | chr5_1:49894539-49894558 | None:intergenic | 25.0% |
| ! | TAATGCTGTTACTGAATTTA+TGG | + | chr5_1:49894706-49894725 | Msa0734950:intron | 25.0% |
| ! | AATGCTGTTACTGAATTTAT+GGG | + | chr5_1:49894707-49894726 | Msa0734950:intron | 25.0% |
| ! | ATAAGCATTTATTGCATGTT+TGG | + | chr5_1:49894971-49894990 | Msa0734950:CDS | 25.0% |
| CATAAGAAAGAGAAGAGAAA+AGG | - | chr5_1:49893889-49893908 | None:intergenic | 30.0% | |
| ! | CTTTTCTCTTCTCTTTCTTA+TGG | + | chr5_1:49893887-49893906 | Msa0734950:exon | 30.0% |
| AGAAAGTTGTTGACATGAAA+GGG | - | chr5_1:49893995-49894014 | None:intergenic | 30.0% | |
| GCTAAGAAAAGTTTGAACAA+AGG | + | chr5_1:49894494-49894513 | Msa0734950:intron | 30.0% | |
| AATTGGATGAACAATTCTGA+GGG | + | chr5_1:49894814-49894833 | Msa0734950:CDS | 30.0% | |
| TGATGATTGAAAAGTTGTTG+TGG | - | chr5_1:49894911-49894930 | None:intergenic | 30.0% | |
| ! | ACTTTTCAATCATCAACTGT+TGG | + | chr5_1:49894916-49894935 | Msa0734950:CDS | 30.0% |
| CATAAGAAAGAGAAGAGAAA+AGG | - | chr5_1:49893889-49893908 | None:intergenic | 30.0% | |
| ! | CTTTTCTCTTCTCTTTCTTA+TGG | + | chr5_1:49893887-49893906 | Msa0734950:exon | 30.0% |
| AGAAAGTTGTTGACATGAAA+GGG | - | chr5_1:49893995-49894014 | None:intergenic | 30.0% | |
| GCTAAGAAAAGTTTGAACAA+AGG | + | chr5_1:49894494-49894513 | Msa0734950:intron | 30.0% | |
| AATTGGATGAACAATTCTGA+GGG | + | chr5_1:49894814-49894833 | Msa0734950:CDS | 30.0% | |
| TGATGATTGAAAAGTTGTTG+TGG | - | chr5_1:49894911-49894930 | None:intergenic | 30.0% | |
| ! | ACTTTTCAATCATCAACTGT+TGG | + | chr5_1:49894916-49894935 | Msa0734950:CDS | 30.0% |
| GAGAAAGTTGTTGACATGAA+AGG | - | chr5_1:49893996-49894015 | None:intergenic | 35.0% | |
| AGTAAGAAGAAGGAGAAACA+GGG | - | chr5_1:49894127-49894146 | None:intergenic | 35.0% | |
| AAGTAAGAAGAAGGAGAAAC+AGG | - | chr5_1:49894128-49894147 | None:intergenic | 35.0% | |
| GGAATAGCAAAGTAAGAAGA+AGG | - | chr5_1:49894137-49894156 | None:intergenic | 35.0% | |
| TTGGAAGAGTTAAGCATAAC+AGG | - | chr5_1:49894194-49894213 | None:intergenic | 35.0% | |
| CAATTGGATGAACAATTCTG+AGG | + | chr5_1:49894813-49894832 | Msa0734950:CDS | 35.0% | |
| ATTGGATGAACAATTCTGAG+GGG | + | chr5_1:49894815-49894834 | Msa0734950:CDS | 35.0% | |
| ! | TCTTTTCAAACCCAACAACA+AGG | + | chr5_1:49894865-49894884 | Msa0734950:CDS | 35.0% |
| ! | CTTTTCAAACCCAACAACAA+GGG | + | chr5_1:49894866-49894885 | Msa0734950:CDS | 35.0% |
| TTTCAATCATCAACTGTTGG+TGG | + | chr5_1:49894919-49894938 | Msa0734950:CDS | 35.0% | |
| GAGAAAGTTGTTGACATGAA+AGG | - | chr5_1:49893996-49894015 | None:intergenic | 35.0% | |
| AGTAAGAAGAAGGAGAAACA+GGG | - | chr5_1:49894127-49894146 | None:intergenic | 35.0% | |
| AAGTAAGAAGAAGGAGAAAC+AGG | - | chr5_1:49894128-49894147 | None:intergenic | 35.0% | |
| GGAATAGCAAAGTAAGAAGA+AGG | - | chr5_1:49894137-49894156 | None:intergenic | 35.0% | |
| TTGGAAGAGTTAAGCATAAC+AGG | - | chr5_1:49894194-49894213 | None:intergenic | 35.0% | |
| CAATTGGATGAACAATTCTG+AGG | + | chr5_1:49894813-49894832 | Msa0734950:CDS | 35.0% | |
| ATTGGATGAACAATTCTGAG+GGG | + | chr5_1:49894815-49894834 | Msa0734950:CDS | 35.0% | |
| ! | TCTTTTCAAACCCAACAACA+AGG | + | chr5_1:49894865-49894884 | Msa0734950:CDS | 35.0% |
| ! | CTTTTCAAACCCAACAACAA+GGG | + | chr5_1:49894866-49894885 | Msa0734950:CDS | 35.0% |
| TTTCAATCATCAACTGTTGG+TGG | + | chr5_1:49894919-49894938 | Msa0734950:CDS | 35.0% | |
| AGAAAGAGAAGAGAAAAGGG+TGG | - | chr5_1:49893885-49893904 | None:intergenic | 40.0% | |
| !! | GGGGGTGTAGACTTAAATTT+TGG | - | chr5_1:49894080-49894099 | None:intergenic | 40.0% |
| TAAGAAGAAGGAGAAACAGG+GGG | - | chr5_1:49894125-49894144 | None:intergenic | 40.0% | |
| GTAAGAAGAAGGAGAAACAG+GGG | - | chr5_1:49894126-49894145 | None:intergenic | 40.0% | |
| !! | TCTTACTTTGCTATTCCTCC+TGG | + | chr5_1:49894140-49894159 | Msa0734950:CDS | 40.0% |
| GCATAACAGGAGAATCAAGA+AGG | - | chr5_1:49894181-49894200 | None:intergenic | 40.0% | |
| ! | ATTTTGCCATCACCTACAAC+TGG | + | chr5_1:49894766-49894785 | Msa0734950:CDS | 40.0% |
| CTGCTCAAAGCAACTACAAT+TGG | + | chr5_1:49894797-49894816 | Msa0734950:CDS | 40.0% | |
| AGAAAGAGAAGAGAAAAGGG+TGG | - | chr5_1:49893885-49893904 | None:intergenic | 40.0% | |
| !! | GGGGGTGTAGACTTAAATTT+TGG | - | chr5_1:49894080-49894099 | None:intergenic | 40.0% |
| TAAGAAGAAGGAGAAACAGG+GGG | - | chr5_1:49894125-49894144 | None:intergenic | 40.0% | |
| GTAAGAAGAAGGAGAAACAG+GGG | - | chr5_1:49894126-49894145 | None:intergenic | 40.0% | |
| !! | TCTTACTTTGCTATTCCTCC+TGG | + | chr5_1:49894140-49894159 | Msa0734950:CDS | 40.0% |
| GCATAACAGGAGAATCAAGA+AGG | - | chr5_1:49894181-49894200 | None:intergenic | 40.0% | |
| ! | ATTTTGCCATCACCTACAAC+TGG | + | chr5_1:49894766-49894785 | Msa0734950:CDS | 40.0% |
| CTGCTCAAAGCAACTACAAT+TGG | + | chr5_1:49894797-49894816 | Msa0734950:CDS | 40.0% | |
| CAGCAGAAGGAGAAGCTAAA+AGG | - | chr5_1:49894022-49894041 | None:intergenic | 45.0% | |
| TCATCTGAAGAAGCAGCAGA+AGG | - | chr5_1:49894035-49894054 | None:intergenic | 45.0% | |
| TGACAAAGGCAAAGAAGGAG+GGG | - | chr5_1:49894099-49894118 | None:intergenic | 45.0% | |
| GTGACAAAGGCAAAGAAGGA+GGG | - | chr5_1:49894100-49894119 | None:intergenic | 45.0% | |
| GAGAATCAAGAAGGTCAGCA+GGG | - | chr5_1:49894172-49894191 | None:intergenic | 45.0% | |
| ! | AAAGCACCAGTTGTAGGTGA+TGG | - | chr5_1:49894775-49894794 | None:intergenic | 45.0% |
| GGGGAATCAGCAAATGAGAA+AGG | + | chr5_1:49894834-49894853 | Msa0734950:CDS | 45.0% | |
| CAGCAGAAGGAGAAGCTAAA+AGG | - | chr5_1:49894022-49894041 | None:intergenic | 45.0% | |
| TCATCTGAAGAAGCAGCAGA+AGG | - | chr5_1:49894035-49894054 | None:intergenic | 45.0% | |
| TGACAAAGGCAAAGAAGGAG+GGG | - | chr5_1:49894099-49894118 | None:intergenic | 45.0% | |
| GTGACAAAGGCAAAGAAGGA+GGG | - | chr5_1:49894100-49894119 | None:intergenic | 45.0% | |
| GAGAATCAAGAAGGTCAGCA+GGG | - | chr5_1:49894172-49894191 | None:intergenic | 45.0% | |
| ! | AAAGCACCAGTTGTAGGTGA+TGG | - | chr5_1:49894775-49894794 | None:intergenic | 45.0% |
| GGGGAATCAGCAAATGAGAA+AGG | + | chr5_1:49894834-49894853 | Msa0734950:CDS | 45.0% | |
| GACAAAGGCAAAGAAGGAGG+GGG | - | chr5_1:49894098-49894117 | None:intergenic | 50.0% | |
| GGTGACAAAGGCAAAGAAGG+AGG | - | chr5_1:49894101-49894120 | None:intergenic | 50.0% | |
| GGAGGTGACAAAGGCAAAGA+AGG | - | chr5_1:49894104-49894123 | None:intergenic | 50.0% | |
| GGAGAATCAAGAAGGTCAGC+AGG | - | chr5_1:49894173-49894192 | None:intergenic | 50.0% | |
| !! | GCAGCAAAAGCACCAGTTGT+AGG | - | chr5_1:49894781-49894800 | None:intergenic | 50.0% |
| GACAAAGGCAAAGAAGGAGG+GGG | - | chr5_1:49894098-49894117 | None:intergenic | 50.0% | |
| GGTGACAAAGGCAAAGAAGG+AGG | - | chr5_1:49894101-49894120 | None:intergenic | 50.0% | |
| GGAGGTGACAAAGGCAAAGA+AGG | - | chr5_1:49894104-49894123 | None:intergenic | 50.0% | |
| GGAGAATCAAGAAGGTCAGC+AGG | - | chr5_1:49894173-49894192 | None:intergenic | 50.0% | |
| !! | GCAGCAAAAGCACCAGTTGT+AGG | - | chr5_1:49894781-49894800 | None:intergenic | 50.0% |
| GAAACAGGGGGAGGTGACAA+AGG | - | chr5_1:49894113-49894132 | None:intergenic | 55.0% | |
| GAAGAAGGAGAAACAGGGGG+AGG | - | chr5_1:49894122-49894141 | None:intergenic | 55.0% | |
| TCAGCAGGGCTTAAACCAGG+AGG | - | chr5_1:49894158-49894177 | None:intergenic | 55.0% | |
| AGGTCAGCAGGGCTTAAACC+AGG | - | chr5_1:49894161-49894180 | None:intergenic | 55.0% | |
| !! | AGCAGCAGGCCCTTGTTGTT+GGG | - | chr5_1:49894878-49894897 | None:intergenic | 55.0% |
| GTGGATGCAGTAACAGCAGC+AGG | - | chr5_1:49894892-49894911 | None:intergenic | 55.0% | |
| GAAACAGGGGGAGGTGACAA+AGG | - | chr5_1:49894113-49894132 | None:intergenic | 55.0% | |
| GAAGAAGGAGAAACAGGGGG+AGG | - | chr5_1:49894122-49894141 | None:intergenic | 55.0% | |
| TCAGCAGGGCTTAAACCAGG+AGG | - | chr5_1:49894158-49894177 | None:intergenic | 55.0% | |
| AGGTCAGCAGGGCTTAAACC+AGG | - | chr5_1:49894161-49894180 | None:intergenic | 55.0% | |
| !! | AGCAGCAGGCCCTTGTTGTT+GGG | - | chr5_1:49894878-49894897 | None:intergenic | 55.0% |
| GTGGATGCAGTAACAGCAGC+AGG | - | chr5_1:49894892-49894911 | None:intergenic | 55.0% | |
| ! | CAGCAGCAGGCCCTTGTTGT+TGG | - | chr5_1:49894879-49894898 | None:intergenic | 60.0% |
| ! | CAGCAGCAGGCCCTTGTTGT+TGG | - | chr5_1:49894879-49894898 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 49893830 | 49895059 | 49893830 | ID=Msa0734950;Name=Msa0734950 |
| chr5_1 | mRNA | 49893830 | 49895059 | 49893830 | ID=Msa0734950-mRNA-1;Parent=Msa0734950;Name=Msa0734950-mRNA-1;_AED=0.00;_eAED=0.00;_QI=76|1|1|1|1|1|2|45|185 |
| chr5_1 | exon | 49893830 | 49894214 | 49893830 | ID=Msa0734950-mRNA-1:exon:14090;Parent=Msa0734950-mRNA-1 |
| chr5_1 | exon | 49894766 | 49895059 | 49894766 | ID=Msa0734950-mRNA-1:exon:14091;Parent=Msa0734950-mRNA-1 |
| chr5_1 | five_prime_UTR | 49893830 | 49893905 | 49893830 | ID=Msa0734950-mRNA-1:five_prime_utr;Parent=Msa0734950-mRNA-1 |
| chr5_1 | CDS | 49893906 | 49894214 | 49893906 | ID=Msa0734950-mRNA-1:cds;Parent=Msa0734950-mRNA-1 |
| chr5_1 | CDS | 49894766 | 49895014 | 49894766 | ID=Msa0734950-mRNA-1:cds;Parent=Msa0734950-mRNA-1 |
| chr5_1 | three_prime_UTR | 49895015 | 49895059 | 49895015 | ID=Msa0734950-mRNA-1:three_prime_utr;Parent=Msa0734950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
