AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0848440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0848440 MtrunA17_Chr5g0432161 95.741 587 15 7 1 582 1 582 0.0 1133
Msa0848440 MtrunA17_Chr3g0106491 55.342 571 165 21 35 581 3 507 2.76e-171 496
Msa0848440 MtrunA17_Chr7g0243891 47.359 549 222 18 58 581 35 541 9.20e-137 409
Msa0848440 MtrunA17_Chr4g0004911 48.276 406 151 14 81 480 47 399 9.93e-104 322
Msa0848440 MtrunA17_Chr3g0079691 41.935 527 215 18 80 536 110 615 3.99e-95 306
Msa0848440 MtrunA17_Chr5g0445311 41.935 434 210 9 59 481 26 428 8.49e-91 290
Msa0848440 MtrunA17_Chr5g0445311 50.649 77 24 2 417 493 200 262 3.07e-15 79.0
Msa0848440 MtrunA17_Chr3g0101131 40.466 472 187 16 61 479 47 477 2.04e-87 282
Msa0848440 MtrunA17_Chr3g0101131 52.000 75 22 2 417 491 243 303 1.23e-15 80.1
Msa0848440 MtrunA17_Chr7g0218081 39.458 517 229 17 5 494 27 486 3.24e-85 275
Msa0848440 MtrunA17_Chr7g0218081 51.190 84 27 2 417 500 228 297 6.32e-17 84.0
Msa0848440 MtrunA17_Chr5g0418191 49.485 291 116 9 213 486 112 388 8.27e-79 255
Msa0848440 MtrunA17_Chr5g0418191 41.667 120 64 4 220 335 298 415 9.38e-16 79.7
Msa0848440 MtrunA17_Chr7g0249311 50.175 285 96 4 236 479 175 454 2.40e-78 260
Msa0848440 MtrunA17_Chr7g0249311 59.701 67 26 1 417 483 179 244 7.27e-17 84.3
Msa0848440 MtrunA17_Chr7g0249311 46.078 102 44 4 240 331 392 492 9.56e-16 80.9
Msa0848440 MtrunA17_Chr7g0263531 48.438 256 105 6 232 476 181 420 8.03e-75 245
Msa0848440 MtrunA17_Chr7g0263531 30.573 157 87 4 164 298 264 420 2.26e-12 69.3
Msa0848440 MtrunA17_Chr4g0042831 48.617 253 83 6 235 486 140 346 5.07e-70 231
Msa0848440 MtrunA17_Chr5g0447701 42.629 251 127 4 230 480 82 315 7.17e-53 185
Msa0848440 MtrunA17_Chr4g0074001 37.722 281 148 7 206 479 161 421 7.02e-47 172
Msa0848440 MtrunA17_Chr7g0249301 80.488 82 16 0 398 479 273 354 4.56e-42 155
Msa0848440 MtrunA17_Chr7g0249301 66.667 72 24 0 241 312 63 134 2.80e-25 107
Msa0848440 MtrunA17_Chr7g0249301 60.000 70 23 3 416 483 61 127 1.09e-15 79.3
Msa0848440 MtrunA17_Chr7g0249301 58.065 62 21 2 240 298 292 351 2.26e-14 75.1
Msa0848440 MtrunA17_Chr5g0447711 30.844 308 175 7 179 480 18 293 9.22e-37 139
Msa0848440 MtrunA17_Chr5g0432071 49.286 140 66 3 211 349 76 211 1.17e-34 130
Msa0848440 MtrunA17_Chr5g0432071 50.000 78 35 2 417 491 104 180 8.58e-17 79.3
Msa0848440 MtrunA17_Chr8g0335811 60.870 92 34 1 382 473 121 210 1.81e-33 127
Msa0848440 MtrunA17_Chr8g0335811 36.842 133 66 4 182 296 79 211 6.80e-16 77.4
Msa0848440 MtrunA17_Chr1g0188941 67.089 79 26 0 398 476 32 110 2.26e-33 123
Msa0848440 MtrunA17_Chr1g0188941 45.122 82 39 2 223 298 29 110 3.36e-17 77.8
Msa0848440 MtrunA17_Chr3g0129361 66.216 74 25 0 400 473 127 200 1.01e-29 116
Msa0848440 MtrunA17_Chr3g0129361 55.172 58 25 1 240 296 144 201 9.19e-15 73.9
Msa0848440 MtrunA17_Chr8g0383351 65.333 75 25 1 400 473 142 216 2.43e-28 113
Msa0848440 MtrunA17_Chr8g0383351 55.172 58 25 1 240 296 160 217 6.36e-15 74.7
Msa0848440 MtrunA17_Chr4g0051881 47.581 124 51 2 374 483 122 245 1.09e-26 111
Msa0848440 MtrunA17_Chr4g0051881 55.072 69 30 1 240 307 178 246 3.29e-16 80.1
Msa0848440 MtrunA17_Chr2g0294231 62.338 77 29 0 401 477 187 263 3.46e-26 110
Msa0848440 MtrunA17_Chr2g0294231 52.941 68 31 1 240 306 203 270 4.48e-15 77.4
Msa0848440 MtrunA17_Chr1g0150801 60.526 76 29 1 398 473 84 158 4.58e-26 104
Msa0848440 MtrunA17_Chr1g0150801 50.769 65 31 1 232 295 94 158 1.13e-14 72.0
Msa0848440 MtrunA17_Chr7g0270191 52.747 91 43 0 401 491 129 219 7.79e-26 107
Msa0848440 MtrunA17_Chr7g0270191 37.273 110 62 3 210 312 109 218 2.79e-14 73.9
Msa0848440 MtrunA17_Chr1g0194481 53.846 91 42 0 401 491 142 232 7.84e-26 108
Msa0848440 MtrunA17_Chr1g0194481 51.562 64 30 1 240 302 158 221 6.39e-14 73.2
Msa0848440 MtrunA17_Chr8g0386241 47.059 102 54 0 392 493 78 179 3.10e-25 102
Msa0848440 MtrunA17_Chr8g0386241 56.140 57 24 1 240 295 103 159 4.64e-15 73.6
Msa0848440 MtrunA17_Chr5g0443131 60.759 79 30 1 403 480 143 221 5.65e-25 105
Msa0848440 MtrunA17_Chr5g0443131 52.239 67 31 1 240 305 157 223 6.29e-15 75.9
Msa0848440 MtrunA17_Chr5g0418781 54.878 82 37 0 392 473 99 180 8.91e-25 104
Msa0848440 MtrunA17_Chr5g0418781 57.895 57 23 1 240 295 124 180 1.01e-12 68.9
Msa0848440 MtrunA17_Chr7g0248721 53.333 90 41 1 384 473 108 196 9.84e-25 102
Msa0848440 MtrunA17_Chr7g0248721 49.231 65 31 2 232 295 133 196 2.03e-12 67.0
Msa0848440 MtrunA17_Chr7g0224801 54.321 81 37 0 408 488 84 164 1.19e-24 100
Msa0848440 MtrunA17_Chr7g0224801 52.632 57 26 1 240 295 93 149 1.44e-13 68.9
Msa0848440 MtrunA17_Chr4g0060271 45.946 111 52 3 370 476 209 315 4.00e-24 106
Msa0848440 MtrunA17_Chr4g0060271 52.459 61 27 2 240 298 255 315 9.19e-14 74.3
Msa0848440 MtrunA17_Chr2g0302391 49.020 102 50 2 379 478 172 273 6.75e-24 104
Msa0848440 MtrunA17_Chr2g0302391 39.535 86 45 3 234 312 200 285 1.57e-11 66.6
Msa0848440 MtrunA17_Chr4g0068541 58.442 77 32 0 401 477 192 268 7.67e-24 104
Msa0848440 MtrunA17_Chr4g0068541 53.125 64 29 1 240 302 208 271 8.87e-15 76.6
Msa0848440 MtrunA17_Chr3g0099641 47.727 88 45 1 390 476 224 311 8.54e-24 104
Msa0848440 MtrunA17_Chr3g0099641 40.000 85 49 2 241 323 252 336 1.15e-13 73.6
Msa0848440 MtrunA17_Chr4g0075201 52.381 84 39 1 396 478 246 329 5.12e-23 102
Msa0848440 MtrunA17_Chr4g0075201 49.180 61 29 2 240 298 267 327 3.66e-12 68.9
Msa0848440 MtrunA17_Chr3g0129321 54.667 75 34 0 403 477 104 178 6.04e-23 97.1
Msa0848440 MtrunA17_Chr3g0129321 53.333 60 27 1 240 298 118 177 3.23e-13 68.9
Msa0848440 MtrunA17_Chr2g0322391 52.381 84 39 1 396 478 328 411 8.76e-23 102
Msa0848440 MtrunA17_Chr2g0322391 39.759 83 48 2 240 320 349 431 2.54e-12 69.7
Msa0848440 MtrunA17_Chr8g0383251 53.425 73 34 0 404 476 95 167 1.01e-22 95.9
Msa0848440 MtrunA17_Chr8g0383251 53.333 60 27 1 240 298 108 167 2.92e-13 68.6
Msa0848440 MtrunA17_Chr2g0288871 53.165 79 36 1 399 476 287 365 1.02e-22 102
Msa0848440 MtrunA17_Chr2g0288871 50.000 60 28 2 241 298 306 365 1.37e-12 70.5
Msa0848440 MtrunA17_Chr4g0051181 53.165 79 36 1 401 478 227 305 1.33e-22 101
Msa0848440 MtrunA17_Chr4g0051181 53.333 60 26 2 241 298 244 303 3.15e-13 72.4
Msa0848440 MtrunA17_Chr7g0270831 48.837 86 43 1 401 485 200 285 1.63e-22 100
Msa0848440 MtrunA17_Chr7g0270831 50.000 60 28 2 241 298 217 276 2.46e-12 69.3
Msa0848440 MtrunA17_Chr7g0216891 55.000 80 31 2 395 473 201 276 5.31e-22 100
Msa0848440 MtrunA17_Chr7g0216891 51.724 58 26 2 240 295 219 276 1.02e-11 67.8
Msa0848440 MtrunA17_Chr1g0189391 47.959 98 47 2 377 473 60 154 1.81e-21 95.9
Msa0848440 MtrunA17_Chr1g0189391 50.847 59 27 2 240 296 97 155 3.02e-11 65.1
Msa0848440 MtrunA17_Chr4g0025061 46.237 93 49 1 387 478 330 422 4.47e-21 97.4
Msa0848440 MtrunA17_Chr4g0025061 41.096 73 41 2 241 311 361 433 8.38e-11 64.7
Msa0848440 MtrunA17_Chr4g0053281 51.765 85 37 2 398 481 250 331 5.21e-21 94.7
Msa0848440 MtrunA17_Chr4g0053281 50.000 58 27 2 241 296 267 324 7.25e-13 70.1
Msa0848440 MtrunA17_Chr1g0147881 56.098 82 32 2 398 478 246 324 1.12e-20 93.6
Msa0848440 MtrunA17_Chr1g0147881 54.386 57 24 2 241 295 263 319 6.48e-12 67.4
Msa0848440 MtrunA17_Chr4g0025051 37.879 132 81 1 347 477 265 396 1.19e-20 95.9
Msa0848440 MtrunA17_Chr7g0238921 37.013 154 67 5 417 547 124 270 6.94e-20 90.9
Msa0848440 MtrunA17_Chr7g0238921 63.158 57 20 1 240 295 124 180 6.92e-16 79.0
Msa0848440 MtrunA17_Chr6g0485431 49.398 83 41 1 395 476 132 214 7.71e-20 91.7
Msa0848440 MtrunA17_Chr6g0485431 37.168 113 53 5 238 332 152 264 4.81e-14 73.9
Msa0848440 MtrunA17_Chr6g0468181 68.519 54 17 0 256 309 18 71 1.76e-19 84.3
Msa0848440 MtrunA17_Chr3g0136961 53.425 73 31 3 404 473 123 195 2.10e-19 89.0
Msa0848440 MtrunA17_Chr3g0136961 33.987 153 76 6 153 299 66 199 2.37e-16 80.1
Msa0848440 MtrunA17_Chr5g0401821 51.899 79 37 1 398 475 180 258 3.79e-19 87.8
Msa0848440 MtrunA17_Chr5g0401821 50.000 58 27 2 241 296 200 257 1.68e-12 68.2
Msa0848440 MtrunA17_Chr1g0150271 50.794 63 30 1 415 476 99 161 1.32e-18 85.9
Msa0848440 MtrunA17_Chr1g0150271 38.889 90 45 3 229 308 82 171 1.91e-12 67.8
Msa0848440 MtrunA17_Chr4g0071521 48.276 87 44 1 397 482 225 311 1.37e-18 87.0
Msa0848440 MtrunA17_Chr4g0071521 48.276 58 28 2 241 296 246 303 8.11e-11 63.5
Msa0848440 MtrunA17_Chr4g0001361 43.396 106 49 4 387 487 137 236 1.48e-18 87.0
Msa0848440 MtrunA17_Chr4g0001361 51.667 60 27 2 241 298 163 222 3.40e-14 73.9
Msa0848440 MtrunA17_Chr2g0333851 54.688 64 28 1 415 477 167 230 2.72e-18 86.3
Msa0848440 MtrunA17_Chr2g0333851 50.000 60 28 2 241 298 170 229 6.44e-13 70.1
Msa0848440 MtrunA17_Chr1g0150281 41.935 93 47 4 387 473 106 197 3.96e-18 85.1
Msa0848440 MtrunA17_Chr1g0150281 50.877 57 26 2 241 295 141 197 1.28e-13 71.6
Msa0848440 MtrunA17_Chr3g0139021 48.718 78 39 1 398 474 295 372 1.46e-16 82.0
Msa0848440 MtrunA17_Chr7g0228941 49.351 77 36 2 398 473 35 109 1.58e-16 76.3
Msa0848440 MtrunA17_Chr1g0184691 49.351 77 38 1 398 473 274 350 2.83e-16 80.9
Msa0848440 MtrunA17_Chr1g0184691 54.237 59 25 2 241 297 294 352 2.33e-13 72.0
Msa0848440 MtrunA17_Chr4g0024391 39.785 93 55 1 387 478 199 291 6.15e-16 80.9
Msa0848440 MtrunA17_Chr2g0284321 52.381 63 29 1 418 479 36 98 2.01e-15 75.5
Msa0848440 MtrunA17_Chr2g0284321 50.000 60 28 2 241 298 36 95 5.34e-12 65.5
Msa0848440 MtrunA17_Chr8g0379461 41.860 86 48 2 418 502 77 161 2.34e-15 76.3
Msa0848440 MtrunA17_Chr8g0379461 39.785 93 48 4 241 331 77 163 3.33e-12 66.6
Msa0848440 MtrunA17_Chr2g0289181 53.226 62 28 1 418 478 15 76 2.85e-15 75.5
Msa0848440 MtrunA17_Chr2g0289181 58.333 60 23 2 241 298 15 74 4.29e-15 75.1
Msa0848440 MtrunA17_Chr7g0270051 34.513 113 61 2 390 489 14 126 8.24e-15 74.7
Msa0848440 MtrunA17_Chr7g0270051 51.667 60 27 2 241 298 54 113 1.42e-11 65.1
Msa0848440 MtrunA17_Chr1g0202461 38.947 95 56 2 398 491 243 336 1.56e-13 72.8
Msa0848440 MtrunA17_Chr1g0202461 49.315 73 33 3 239 309 260 330 1.04e-12 70.1
Msa0848440 MtrunA17_Chr2g0293481 37.190 121 66 3 380 498 238 350 3.58e-13 72.0
Msa0848440 MtrunA17_Chr5g0419241 54.167 48 22 0 396 443 56 103 4.09e-13 65.9
Msa0848440 MtrunA17_Chr2g0319961 47.619 63 32 1 418 479 81 143 4.24e-13 69.7
Msa0848440 MtrunA17_Chr8g0387501 43.243 74 41 1 416 488 128 201 4.40e-13 70.1
Msa0848440 MtrunA17_Chr8g0387501 43.011 93 44 5 241 326 130 220 1.96e-12 67.8
Msa0848440 MtrunA17_Chr8g0348311 46.154 78 40 2 418 494 156 232 1.24e-12 69.3
Msa0848440 MtrunA17_Chr3g0126391 45.588 68 33 2 230 293 123 190 1.64e-12 68.9
Msa0848440 MtrunA17_Chr3g0126391 50.847 59 26 1 416 471 132 190 4.59e-12 67.8
Msa0848440 MtrunA17_Chr1g0188961 58.824 51 20 1 437 487 3 52 1.83e-12 62.8
Msa0848440 MtrunA17_Chr8g0387981 51.724 58 24 2 240 293 132 189 2.10e-12 68.9
Msa0848440 MtrunA17_Chr8g0387981 50.000 58 26 1 417 471 132 189 5.31e-11 64.7
Msa0848440 MtrunA17_Chr7g0248691 47.692 65 33 1 418 481 155 219 4.85e-12 67.4
Msa0848440 MtrunA17_Chr8g0347251 42.254 71 32 3 240 306 136 201 5.89e-11 64.3
Msa0848440 MtrunA17_Chr7g0275531 46.269 67 28 3 240 298 118 184 8.95e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0848440 AT2G38470.1 56.145 358 124 12 237 581 181 518 9.55e-109 336
Msa0848440 AT2G03340.1 44.292 438 188 14 60 496 108 490 2.07e-93 296
Msa0848440 AT4G26640.7 41.527 419 222 7 76 486 7 410 1.77e-90 288
Msa0848440 AT4G26640.2 41.527 419 222 7 76 486 47 450 4.18e-90 289
Msa0848440 AT2G30250.1 43.162 468 161 14 35 478 3 389 3.63e-88 278
Msa0848440 AT2G30250.1 49.383 81 38 2 226 303 312 392 5.98e-16 80.5
Msa0848440 AT1G13960.1 41.860 430 173 10 60 476 103 468 2.33e-85 275
Msa0848440 AT4G26640.5 54.440 259 99 5 234 486 29 274 2.44e-85 271
Msa0848440 AT4G26640.6 54.440 259 99 5 234 486 29 274 2.44e-85 271
Msa0848440 AT4G26640.4 54.440 259 99 5 234 486 29 274 2.44e-85 271
Msa0848440 AT4G26640.3 54.440 259 99 5 234 486 29 274 2.44e-85 271
Msa0848440 AT4G26640.1 54.826 259 98 5 234 486 133 378 1.10e-84 272
Msa0848440 AT5G07100.2 57.438 242 41 5 239 479 23 203 2.16e-82 257
Msa0848440 AT5G07100.4 57.438 242 41 5 239 479 23 203 2.16e-82 257
Msa0848440 AT5G07100.5 57.438 242 41 5 239 479 23 203 2.16e-82 257
Msa0848440 AT5G07100.3 57.438 242 41 5 239 479 23 203 2.16e-82 257
Msa0848440 AT5G07100.1 56.967 244 43 5 237 479 114 296 3.04e-82 260
Msa0848440 AT5G07100.1 35.000 300 123 12 57 298 8 293 1.41e-28 116
Msa0848440 AT5G07100.1 44.706 85 36 1 403 476 92 176 4.75e-16 79.7
Msa0848440 AT1G13960.2 51.724 261 102 4 229 476 66 315 5.65e-79 253
Msa0848440 AT4G26440.1 48.485 297 109 6 239 495 177 469 7.07e-75 249
Msa0848440 AT3G01080.2 51.261 238 78 4 239 476 204 403 1.07e-70 235
Msa0848440 AT3G01080.1 51.261 238 78 4 239 476 166 365 1.31e-70 234
Msa0848440 AT2G37260.3 48.864 264 102 6 232 475 77 327 1.11e-62 210
Msa0848440 AT2G37260.2 48.864 264 102 6 232 475 75 325 1.33e-62 210
Msa0848440 AT2G37260.1 48.864 264 102 6 232 475 157 407 7.39e-62 211
Msa0848440 AT2G04880.2 45.528 246 117 4 240 479 111 345 1.98e-61 210
Msa0848440 AT2G04880.2 54.688 64 28 1 415 478 109 171 2.02e-16 82.4
Msa0848440 AT2G04880.2 55.882 68 29 1 232 298 275 342 5.09e-16 81.3
Msa0848440 AT2G04880.1 43.446 267 116 6 240 479 111 369 9.14e-61 209
Msa0848440 AT2G04880.1 54.688 64 28 1 415 478 109 171 2.28e-16 82.4
Msa0848440 AT2G04880.1 55.882 68 29 1 232 298 299 366 5.43e-16 81.3
Msa0848440 AT4G30935.1 42.194 237 123 5 241 477 169 391 2.44e-48 175
Msa0848440 AT4G30935.1 50.000 70 34 1 241 309 332 401 2.42e-15 79.3
Msa0848440 AT4G12020.5 47.143 210 104 4 229 437 391 594 1.70e-47 179
Msa0848440 AT4G12020.5 48.529 68 34 1 416 483 400 466 4.28e-12 70.1
Msa0848440 AT5G56270.1 78.431 102 20 1 378 479 450 549 4.33e-47 176
Msa0848440 AT5G56270.1 39.381 226 122 5 87 303 117 336 4.12e-32 132
Msa0848440 AT5G56270.1 51.282 78 35 2 224 298 469 546 1.32e-15 80.9
Msa0848440 AT5G56270.1 60.000 60 23 1 417 476 273 331 1.55e-15 80.5
Msa0848440 AT4G12020.6 47.143 210 104 4 229 437 458 661 1.58e-45 174
Msa0848440 AT4G12020.6 50.820 61 29 1 416 476 467 526 7.38e-12 69.3
Msa0848440 AT4G12020.8 47.143 210 104 4 229 437 458 661 1.58e-45 174
Msa0848440 AT4G12020.8 50.820 61 29 1 416 476 467 526 7.38e-12 69.3
Msa0848440 AT4G12020.1 47.143 210 104 4 229 437 458 661 1.80e-45 173
Msa0848440 AT4G12020.1 50.820 61 29 1 416 476 467 526 7.15e-12 69.3
Msa0848440 AT4G12020.9 47.143 210 104 4 229 437 458 661 1.80e-45 173
Msa0848440 AT4G12020.9 50.820 61 29 1 416 476 467 526 7.15e-12 69.3
Msa0848440 AT4G12020.3 47.143 210 104 4 229 437 458 661 1.81e-45 173
Msa0848440 AT4G12020.3 50.820 61 29 1 416 476 467 526 7.65e-12 69.3
Msa0848440 AT4G12020.7 47.143 210 104 4 229 437 458 661 1.86e-45 173
Msa0848440 AT4G12020.7 50.820 61 29 1 416 476 467 526 7.33e-12 69.3
Msa0848440 AT4G12020.10 47.143 210 104 4 229 437 458 661 1.89e-45 173
Msa0848440 AT4G12020.10 50.820 61 29 1 416 476 467 526 7.58e-12 69.3
Msa0848440 AT4G12020.2 47.143 210 104 4 229 437 458 661 2.01e-45 173
Msa0848440 AT4G12020.2 50.820 61 29 1 416 476 467 526 8.06e-12 69.3
Msa0848440 AT4G12020.4 47.143 210 104 4 229 437 458 661 2.04e-45 173
Msa0848440 AT4G12020.4 50.820 61 29 1 416 476 467 526 8.06e-12 69.3
Msa0848440 AT4G12020.11 47.143 210 104 4 229 437 458 661 3.59e-45 172
Msa0848440 AT4G12020.11 50.820 61 29 1 416 476 467 526 9.24e-12 68.9
Msa0848440 AT2G44745.1 60.215 93 36 1 382 473 109 201 1.01e-33 128
Msa0848440 AT2G44745.1 58.621 58 23 1 240 296 145 202 1.57e-15 76.3
Msa0848440 AT4G39410.1 64.474 76 27 0 398 473 204 279 3.83e-28 115
Msa0848440 AT4G39410.1 45.946 74 37 2 226 296 207 280 1.64e-13 72.0
Msa0848440 AT1G55600.1 60.241 83 33 0 396 478 286 368 7.80e-28 117
Msa0848440 AT1G55600.1 55.932 59 25 1 241 298 308 366 3.41e-14 75.9
Msa0848440 AT1G29860.1 51.376 109 42 2 384 481 93 201 1.03e-26 110
Msa0848440 AT1G29860.1 49.333 75 36 2 240 313 136 209 5.85e-15 76.3
Msa0848440 AT4G18170.1 63.158 76 28 0 401 476 156 231 1.74e-26 110
Msa0848440 AT4G18170.1 38.571 140 83 3 240 377 172 310 1.88e-14 75.1
Msa0848440 AT3G01080.3 70.312 64 19 0 239 302 204 267 2.79e-26 110
Msa0848440 AT3G01080.3 59.091 66 26 1 417 482 205 269 8.17e-18 85.5
Msa0848440 AT1G69310.4 60.256 78 31 0 396 473 126 203 5.86e-26 108
Msa0848440 AT1G69310.4 54.386 57 25 1 240 295 147 203 1.42e-12 68.9
Msa0848440 AT1G69310.2 60.256 78 31 0 396 473 126 203 5.86e-26 108
Msa0848440 AT1G69310.2 54.386 57 25 1 240 295 147 203 1.42e-12 68.9
Msa0848440 AT1G69310.1 60.256 78 31 0 396 473 126 203 5.86e-26 108
Msa0848440 AT1G69310.1 54.386 57 25 1 240 295 147 203 1.42e-12 68.9
Msa0848440 AT1G64000.1 57.692 78 33 0 396 473 93 170 1.40e-25 104
Msa0848440 AT1G64000.1 56.140 57 24 1 240 295 114 170 5.18e-15 74.3
Msa0848440 AT5G41570.1 59.211 76 31 0 398 473 79 154 1.58e-25 103
Msa0848440 AT5G41570.1 56.140 57 24 1 240 295 98 154 1.14e-14 72.8
Msa0848440 AT5G13080.1 59.722 72 29 0 404 475 54 125 7.00e-25 101
Msa0848440 AT5G13080.1 54.386 57 25 1 240 295 67 123 2.77e-15 73.6
Msa0848440 AT5G26170.1 58.571 70 29 0 404 473 100 169 9.19e-25 101
Msa0848440 AT5G26170.1 53.448 58 26 1 240 296 113 170 1.27e-14 72.8
Msa0848440 AT5G49520.1 61.728 81 30 1 401 480 205 285 9.72e-25 107
Msa0848440 AT5G49520.1 53.125 64 29 1 240 302 221 284 6.08e-14 74.3
Msa0848440 AT5G46350.1 52.688 93 44 0 403 495 169 261 1.43e-24 105
Msa0848440 AT5G46350.1 50.000 72 35 1 232 302 175 246 3.14e-13 71.6
Msa0848440 AT2G46130.1 53.571 84 39 0 390 473 3 86 2.39e-24 98.2
Msa0848440 AT2G46130.1 59.649 57 22 1 240 295 30 86 6.72e-16 74.3
Msa0848440 AT2G47260.1 59.211 76 31 0 401 476 158 233 3.18e-24 104
Msa0848440 AT2G47260.1 53.125 64 29 1 240 302 174 237 3.61e-14 74.3
Msa0848440 AT1G62300.1 42.657 143 68 5 348 476 230 372 3.52e-24 107
Msa0848440 AT1G62300.1 50.000 60 28 2 241 298 313 372 9.18e-12 68.2
Msa0848440 AT4G04450.2 52.809 89 41 1 391 478 172 260 5.95e-24 105
Msa0848440 AT4G04450.2 43.836 73 39 2 241 311 199 271 2.71e-12 69.3
Msa0848440 AT3G01970.1 62.500 72 27 0 404 475 52 123 6.71e-24 98.2
Msa0848440 AT3G01970.1 57.627 59 22 2 240 296 65 122 3.37e-13 67.8
Msa0848440 AT5G15130.2 53.846 78 35 1 400 476 168 245 1.03e-23 105
Msa0848440 AT5G15130.2 44.595 74 39 2 240 311 185 258 2.14e-12 70.1
Msa0848440 AT5G15130.1 53.846 78 35 1 400 476 210 287 1.30e-23 105
Msa0848440 AT5G15130.1 44.595 74 39 2 240 311 227 300 2.10e-12 70.1
Msa0848440 AT5G64810.1 57.746 71 30 0 404 474 97 167 1.40e-23 99.0
Msa0848440 AT5G64810.1 50.877 57 27 1 240 295 110 166 1.43e-12 67.4
Msa0848440 AT4G04450.1 52.809 89 41 1 391 478 266 354 3.00e-23 103
Msa0848440 AT4G04450.1 43.836 73 39 2 241 311 293 365 4.25e-12 69.3
Msa0848440 AT4G22070.4 51.724 87 41 1 391 476 271 357 8.59e-23 102
Msa0848440 AT4G22070.4 50.000 60 28 2 241 298 298 357 7.85e-12 68.6
Msa0848440 AT4G22070.3 51.724 87 41 1 391 476 271 357 8.59e-23 102
Msa0848440 AT4G22070.3 50.000 60 28 2 241 298 298 357 7.85e-12 68.6
Msa0848440 AT4G22070.2 51.724 87 41 1 391 476 271 357 8.59e-23 102
Msa0848440 AT4G22070.2 50.000 60 28 2 241 298 298 357 7.85e-12 68.6
Msa0848440 AT4G22070.1 51.724 87 41 1 391 476 271 357 8.59e-23 102
Msa0848440 AT4G22070.1 50.000 60 28 2 241 298 298 357 7.85e-12 68.6
Msa0848440 AT1G68150.1 53.165 79 36 1 401 478 219 297 1.73e-22 100
Msa0848440 AT1G68150.1 53.333 60 26 2 241 298 236 295 2.08e-13 72.4
Msa0848440 AT1G18860.1 52.564 78 36 1 400 476 222 299 1.32e-21 99.0
Msa0848440 AT1G18860.1 50.820 61 28 2 240 298 239 299 2.12e-11 67.0
Msa0848440 AT1G69310.3 56.410 78 30 1 396 473 126 199 2.70e-21 94.7
Msa0848440 AT3G62340.1 47.059 102 44 1 401 502 102 193 8.98e-21 93.2
Msa0848440 AT3G62340.1 50.000 74 35 2 240 311 118 191 2.30e-13 71.2
Msa0848440 AT4G01720.1 54.545 77 34 1 401 476 223 299 1.09e-20 95.9
Msa0848440 AT4G01720.1 37.037 108 60 4 199 298 192 299 1.31e-11 67.4
Msa0848440 AT2G46130.2 50.000 84 38 1 390 473 3 82 9.24e-20 85.1
Msa0848440 AT2G46130.2 54.386 57 21 2 240 295 30 82 2.16e-11 61.2
Msa0848440 AT4G31550.1 55.128 78 31 2 398 474 230 304 1.22e-19 90.9
Msa0848440 AT4G31550.1 49.333 75 36 2 241 313 247 321 6.40e-14 73.6
Msa0848440 AT4G31550.2 55.128 78 31 2 398 474 229 303 1.26e-19 90.5
Msa0848440 AT4G31550.2 49.333 75 36 2 241 313 246 320 6.22e-14 73.6
Msa0848440 AT2G21900.1 50.000 76 35 1 406 478 95 170 1.39e-19 87.8
Msa0848440 AT2G21900.1 46.269 67 35 1 240 305 109 175 8.20e-13 68.2
Msa0848440 AT2G23320.1 50.633 79 35 2 398 475 224 299 1.62e-19 90.1
Msa0848440 AT2G23320.1 53.448 58 25 2 241 296 241 298 1.40e-12 69.3
Msa0848440 AT2G24570.1 57.143 77 29 2 398 473 227 300 1.68e-19 90.1
Msa0848440 AT2G24570.1 54.386 57 24 2 241 295 244 300 4.28e-13 70.9
Msa0848440 AT4G24240.1 52.500 80 37 1 397 475 261 340 1.74e-19 90.9
Msa0848440 AT4G24240.1 53.448 58 25 2 241 296 282 339 3.00e-13 72.0
Msa0848440 AT4G31800.2 50.704 71 33 2 410 478 103 173 1.43e-18 85.9
Msa0848440 AT4G31800.2 38.776 98 55 4 231 324 100 196 1.50e-14 74.3
Msa0848440 AT1G80840.1 51.562 64 30 1 415 477 144 207 2.34e-18 86.7
Msa0848440 AT1G80840.1 53.333 60 26 2 241 298 147 206 3.20e-13 71.2
Msa0848440 AT4G31800.1 50.704 71 33 2 410 478 168 238 2.87e-18 86.3
Msa0848440 AT4G31800.1 38.776 98 55 4 231 324 165 261 2.67e-14 74.7
Msa0848440 AT5G28650.1 50.649 77 37 1 398 473 243 319 1.24e-17 84.7
Msa0848440 AT5G28650.1 54.237 59 25 2 241 297 263 321 6.45e-13 70.5
Msa0848440 AT5G43290.1 43.434 99 38 2 393 473 72 170 1.43e-17 83.6
Msa0848440 AT5G43290.1 63.793 58 20 1 239 295 113 170 5.20e-16 79.0
Msa0848440 AT2G25000.2 50.000 64 31 1 416 478 102 165 1.55e-17 82.4
Msa0848440 AT2G25000.2 47.619 63 31 2 241 301 104 166 9.07e-13 68.6
Msa0848440 AT2G25000.4 50.000 64 31 1 416 478 102 165 1.55e-17 82.4
Msa0848440 AT2G25000.4 47.619 63 31 2 241 301 104 166 9.07e-13 68.6
Msa0848440 AT2G25000.3 50.000 64 31 1 416 478 124 187 3.47e-17 82.0
Msa0848440 AT2G25000.3 47.619 63 31 2 241 301 126 188 1.27e-12 68.6
Msa0848440 AT3G04670.1 50.649 77 37 1 398 473 243 319 3.78e-17 83.6
Msa0848440 AT3G04670.1 52.542 59 26 2 241 297 263 321 8.63e-13 70.1
Msa0848440 AT2G25000.1 50.000 64 31 1 416 478 145 208 4.85e-17 82.0
Msa0848440 AT2G25000.1 47.619 63 31 2 241 301 147 209 1.72e-12 68.6
Msa0848440 AT2G30590.1 51.948 77 36 1 398 473 294 370 6.52e-17 83.2
Msa0848440 AT2G30590.1 54.237 59 25 2 241 297 314 372 3.78e-12 68.6
Msa0848440 AT1G69810.2 46.835 79 40 2 400 476 128 206 7.41e-17 82.4
Msa0848440 AT1G69810.1 46.835 79 40 2 400 476 186 264 9.24e-17 82.8
Msa0848440 AT4G23550.1 44.156 77 42 1 406 481 129 205 5.09e-15 76.6
Msa0848440 AT5G52830.1 40.404 99 56 3 398 494 147 244 9.88e-14 73.2
Msa0848440 AT5G52830.1 44.048 84 43 3 239 320 164 245 2.40e-12 68.9
Msa0848440 AT1G29280.1 50.000 60 29 1 418 476 75 134 1.15e-13 71.6
Msa0848440 AT4G01250.1 50.769 65 31 1 418 481 129 193 1.35e-13 72.4
Msa0848440 AT5G24110.1 38.182 110 51 3 231 336 104 200 2.95e-13 71.2
Msa0848440 AT3G58710.1 48.387 62 31 1 418 478 72 133 1.26e-12 68.9
Msa0848440 AT3G58710.2 48.387 62 31 1 418 478 71 132 1.27e-12 68.9
Msa0848440 AT2G40740.1 36.283 113 52 4 364 472 135 231 1.28e-12 69.3
Msa0848440 AT2G40740.1 33.884 121 66 6 240 355 173 284 6.39e-12 67.0
Msa0848440 AT2G40740.3 36.607 112 51 4 364 471 144 239 1.64e-12 68.9
Msa0848440 AT2G40740.3 33.884 121 66 6 240 355 182 293 8.87e-12 66.6
Msa0848440 AT2G34830.2 37.624 101 54 2 380 479 195 287 2.88e-12 69.3
Msa0848440 AT2G34830.1 37.624 101 54 2 380 479 186 278 2.91e-12 69.3
Msa0848440 AT1G30650.1 37.624 101 54 2 380 479 188 280 4.38e-12 68.9
Msa0848440 AT4G23810.1 45.588 68 33 2 231 294 149 216 5.03e-11 64.7
Msa0848440 AT4G11070.2 45.588 68 31 3 231 293 100 166 5.68e-11 63.9
Msa0848440 AT2G46400.1 42.308 78 38 3 240 310 104 181 6.22e-11 64.3
Msa0848440 AT4G11070.1 45.588 68 31 3 231 293 132 198 6.82e-11 64.3
Msa0848440 AT5G45050.4 46.154 65 34 1 418 481 1042 1106 6.98e-11 65.9
Msa0848440 AT5G45050.2 46.154 65 34 1 418 481 1153 1217 7.64e-11 65.9
Msa0848440 AT5G45050.1 46.154 65 34 1 418 481 1181 1245 7.68e-11 65.9

Find 161 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGGAAGGTTGGAAATTT+TGG 0.123460 5_4:-32933929 Msa0848440:three_prime_UTR
AGATCTTATGATTTGAATTA+TGG 0.156555 5_4:+32933572 None:intergenic
TTGCTGTGGTTGCTGGTAAC+TGG 0.245732 5_4:+32935853 None:intergenic
AGTTACTGAGATAGTTTATA+AGG 0.282812 5_4:-32935672 Msa0848440:CDS
ATAATTTCATACCTTGGATT+TGG 0.285438 5_4:+32934963 None:intergenic
TCAAGGAACATGTCATCTTT+AGG 0.289714 5_4:+32933993 None:intergenic
GGATACAATTGGCGAAAATA+TGG 0.295221 5_4:-32935797 Msa0848440:CDS
CAACAACAAATGGCTGAAAA+TGG 0.301577 5_4:-32934041 Msa0848440:CDS
ATCATCTGATCTTCGGCTTA+AGG 0.306175 5_4:+32935820 None:intergenic
GAGTTGGTTGCTGTGGTTGC+TGG 0.312817 5_4:+32935846 None:intergenic
TTCTTCTTAGTAGGACAGTT+AGG 0.312859 5_4:+32935719 None:intergenic
CTGCAGGGCCAAGGAAATTA+TGG 0.315509 5_4:-32934122 Msa0848440:CDS
ATTTCATTGATTGGATTAAC+AGG 0.319458 5_4:+32935575 None:intergenic
TCTCTCACAGTTCTACTTGC+AGG 0.324754 5_4:+32935080 None:intergenic
AACGTGCCTCGCATGATTTA+AGG 0.326299 5_4:-32934343 Msa0848440:CDS
AAGTAAGAAGAAGGAGAAAC+AGG 0.327987 5_4:+32937303 None:intergenic
CATTAGTTTGTGGCTTCTCT+TGG 0.329118 5_4:-32933728 Msa0848440:three_prime_UTR
CAGCAGCAGGCCCTTGTTGT+TGG 0.337044 5_4:+32936537 None:intergenic
GCCATGGCTGCAGCATTGTT+TGG 0.339692 5_4:+32934215 None:intergenic
GGCTTCTCTTGGCTTTAGTT+AGG 0.341641 5_4:-32933717 Msa0848440:three_prime_UTR
CTGACTCTCAAGAGGCCTTA+TGG 0.347415 5_4:+32934193 None:intergenic
GGTTACAGATGGAGGAAATA+TGG 0.355775 5_4:-32935008 Msa0848440:CDS
CTGCTCAAAGCAACTACAAT+TGG 0.363470 5_4:-32936616 Msa0848440:CDS
TGATCATGGATTTCATTGAT+TGG 0.366627 5_4:+32935566 None:intergenic
TGGATGTAGTTAACCGCATT+TGG 0.369998 5_4:-32933659 Msa0848440:three_prime_UTR
AGCAGCAGGCCCTTGTTGTT+GGG 0.372679 5_4:+32936538 None:intergenic
GTTTCATGTTGTCAAAGGTT+TGG 0.373131 5_4:+32933518 None:intergenic
TGCTTCCTCACTGGACAGTT+AGG 0.375493 5_4:+32934371 None:intergenic
TTAATCATTTGTGGGTTGAT+TGG 0.376583 5_4:-32933679 Msa0848440:three_prime_UTR
TTGGAAGAGTTAAGCATAAC+AGG 0.378565 5_4:+32937237 None:intergenic
GTGCATTTGTAGTAACTTCT+CGG 0.379548 5_4:+32935746 None:intergenic
TTTGGATTTGAAGGGTTGTT+TGG 0.379730 5_4:+32934233 None:intergenic
TTGGCATGTGCGATCAAGAT+TGG 0.381138 5_4:-32933640 Msa0848440:three_prime_UTR
AAATCCATTGTTGGTGTTGT+TGG 0.383862 5_4:+32935889 None:intergenic
GCAGCATTGTTTGGATTTGA+AGG 0.390150 5_4:+32934224 None:intergenic
GAGAATTCTTCAATATCAAT+TGG 0.394609 5_4:-32935494 Msa0848440:CDS
ATATGGACAGAAAGTTGTTA+AGG 0.405032 5_4:-32934991 Msa0848440:CDS
TCTTACTTTGCTATTCCTCC+TGG 0.408483 5_4:-32937288 Msa0848440:CDS
CATAAGAAAGAGAAGAGAAA+AGG 0.414080 5_4:+32937548 None:intergenic
CTTGGCCCTGCAGCATCTGA+AGG 0.418045 5_4:+32934132 None:intergenic
CTCTCAACTTTCTTCTTAGT+AGG 0.422831 5_4:+32935710 None:intergenic
TTCAGCACAGCAAAGATTCA+AGG 0.431997 5_4:+32933976 None:intergenic
TTGAGAATCCATAATTTCCT+TGG 0.432499 5_4:+32934114 None:intergenic
TATACAGGATGGGTTTGGTT+TGG 0.435210 5_4:-32933807 Msa0848440:three_prime_UTR
TGTATCCATCATCTGATCTT+CGG 0.437503 5_4:+32935813 None:intergenic
CTTGTAAAGTTTATACAGGA+TGG 0.438119 5_4:-32933818 Msa0848440:three_prime_UTR
ATATGGACAAAAGCAAGTTA+AGG 0.439389 5_4:-32935780 Msa0848440:CDS
GCAGCAAAAGCACCAGTTGT+AGG 0.442196 5_4:+32936635 None:intergenic
TTAGTAGATACATGGAAGGT+TGG 0.446487 5_4:-32933938 Msa0848440:three_prime_UTR
GGTGACAAAGGCAAAGAAGG+AGG 0.447096 5_4:+32937330 None:intergenic
GGAGGTGACAAAGGCAAAGA+AGG 0.447183 5_4:+32937327 None:intergenic
ATGCTGCAGCCATGGCCATA+AGG 0.448389 5_4:-32934208 Msa0848440:CDS
GGAGAATCAAGAAGGTCAGC+AGG 0.448810 5_4:+32937258 None:intergenic
CTCAAGGTTTGATAATCAAA+TGG 0.448868 5_4:-32934096 Msa0848440:CDS
TGCTGTTGTTGATTCATGTA+AGG 0.449558 5_4:+32934071 None:intergenic
ACGTGCCTCGCATGATTTAA+GGG 0.458975 5_4:-32934342 Msa0848440:CDS
CAGATGATAATAACAATTCA+AGG 0.459469 5_4:-32937380 Msa0848440:CDS
GCTTCATATTTAATCATTTG+TGG 0.459514 5_4:-32933688 Msa0848440:three_prime_UTR
TATGGACAAAAGCAAGTTAA+GGG 0.462416 5_4:-32935779 Msa0848440:CDS
CACCACCTGATCTACTCCTT+TGG 0.463806 5_4:+32935441 None:intergenic
GTTACTGAGATAGTTTATAA+GGG 0.464337 5_4:-32935671 Msa0848440:CDS
CTTCATATTTAATCATTTGT+GGG 0.465775 5_4:-32933687 Msa0848440:three_prime_UTR
GAAAGTTGAGAGATCAATTG+AGG 0.467515 5_4:-32935699 Msa0848440:CDS
AAGTTTATACAGGATGGGTT+TGG 0.467623 5_4:-32933812 Msa0848440:three_prime_UTR
GAGAAAGTTGTTGACATGAA+AGG 0.468026 5_4:+32937435 None:intergenic
GTTCCCGCTGCTCGTGGAAG+TGG 0.469705 5_4:-32934281 Msa0848440:CDS
GGAATAGCAAAGTAAGAAGA+AGG 0.472115 5_4:+32937294 None:intergenic
TTTGAAGGGTTGTTTGGCAT+TGG 0.472870 5_4:+32934239 None:intergenic
AGAAAGTTGTTGACATGAAA+GGG 0.475176 5_4:+32937436 None:intergenic
ATTGATATTGAAGAATTCTC+AGG 0.475349 5_4:+32935497 None:intergenic
TCTTCTTAGTAGGACAGTTA+GGG 0.476077 5_4:+32935720 None:intergenic
GCATTGGTCTGTTCACAGAA+TGG 0.477391 5_4:+32934255 None:intergenic
TCTCACCAAAGGAGTAGATC+AGG 0.482361 5_4:-32935446 Msa0848440:CDS
AACAAGTGACATTGATATCC+TGG 0.483451 5_4:-32935036 Msa0848440:CDS
CGTTCGACATGCTTCCTCAC+TGG 0.483827 5_4:+32934362 None:intergenic
CTTCGGCTTAAGGTTTGAGT+TGG 0.484985 5_4:+32935830 None:intergenic
TTTCAATCATCAACTGTTGG+TGG 0.485570 5_4:-32936494 Msa0848440:CDS
TATGGACAGAAAGTTGTTAA+GGG 0.490445 5_4:-32934990 Msa0848440:CDS
GCAGCAGCAACAACAACAAA+TGG 0.490866 5_4:-32934051 Msa0848440:CDS
GATCAGATGATGGATACAAT+TGG 0.492867 5_4:-32935808 Msa0848440:CDS
ATTTGGTTTCATGTTGTCAA+AGG 0.496915 5_4:+32933513 None:intergenic
AGGAGTAGATCAGGTGGTGC+TGG 0.501974 5_4:-32935437 Msa0848440:CDS
TCCAAACAATGCTGCAGCCA+TGG 0.508008 5_4:-32934216 Msa0848440:CDS
GTTTGAACACTAGCAATCTC+AGG 0.510377 5_4:+32935911 None:intergenic
TGTCCTTGAGGTGCTTGTTG+TGG 0.510790 5_4:+32934167 None:intergenic
CTCAAGAGGCCTTATGGCCA+TGG 0.515208 5_4:+32934199 None:intergenic
AGGTTCTTCCTTAGCTCTAG+AGG 0.516687 5_4:+32934013 None:intergenic
CTTCCACTTCCACGAGCAGC+GGG 0.517985 5_4:+32934278 None:intergenic
TCATATGCATCACATGGTAA+TGG 0.518462 5_4:-32935542 Msa0848440:CDS
ATAAGAAAGAGAAGAGAAAA+GGG 0.518787 5_4:+32937549 None:intergenic
ATTCAACCTTCAGATGCTGC+AGG 0.519985 5_4:-32934138 Msa0848440:CDS
CAGCATTGTTTGGATTTGAA+GGG 0.524122 5_4:+32934225 None:intergenic
CTTCAGATGCTGCAGGGCCA+AGG 0.524642 5_4:-32934131 Msa0848440:CDS
CATGATGTTCCCGCTGCTCG+TGG 0.525878 5_4:-32934287 Msa0848440:CDS
ATCACATGGTAATGGACAAA+TGG 0.525938 5_4:-32935534 Msa0848440:CDS
TTTGATGTTGAGAAATGGAA+GGG 0.527284 5_4:+32937610 None:intergenic
GCTTCCTCACTGGACAGTTA+GGG 0.528656 5_4:+32934372 None:intergenic
TTGTAAAGTTTATACAGGAT+GGG 0.534317 5_4:-32933817 Msa0848440:three_prime_UTR
GTTGTCTGAACTACAACTCT+AGG 0.534551 5_4:+32935056 None:intergenic
AAGGTTTGAGTTGGTTGCTG+TGG 0.535972 5_4:+32935839 None:intergenic
TCCATCTGTAACCATCATCC+AGG 0.539396 5_4:+32935018 None:intergenic
AAGGAAATTATGGATTCTCA+AGG 0.541036 5_4:-32934112 Msa0848440:CDS
AAAGTTGAGAGATCAATTGA+GGG 0.542158 5_4:-32935698 Msa0848440:CDS
GGGGAATCAGCAAATGAGAA+AGG 0.544170 5_4:-32936579 Msa0848440:CDS
GTCTGATTGAAATCCATTGT+TGG 0.544770 5_4:+32935880 None:intergenic
GTGGATGCAGTAACAGCAGC+AGG 0.546307 5_4:+32936524 None:intergenic
CCGTCTGTCTTGATCTTGAT+CGG 0.554098 5_4:-32933546 Msa0848440:three_prime_UTR
GTGATGCATATGACTGATCA+TGG 0.555757 5_4:+32935552 None:intergenic
TGCAGCATCTGAAGGTTGAA+TGG 0.556763 5_4:+32934140 None:intergenic
AGGTCAGCAGGGCTTAAACC+AGG 0.559224 5_4:+32937270 None:intergenic
GAGTTTCTCCTTGTGCATTG+AGG 0.560551 5_4:+32935629 None:intergenic
GTGACAAAGGCAAAGAAGGA+GGG 0.561545 5_4:+32937331 None:intergenic
CAAACCAACAACACCAACAA+TGG 0.565174 5_4:-32935893 Msa0848440:CDS
TGATGATTGAAAAGTTGTTG+TGG 0.568622 5_4:+32936505 None:intergenic
AATTGGATGAACAATTCTGA+GGG 0.569230 5_4:-32936599 Msa0848440:CDS
CAATTGGATGAACAATTCTG+AGG 0.572186 5_4:-32936600 Msa0848440:CDS
AAAGCACCAGTTGTAGGTGA+TGG 0.572239 5_4:+32936641 None:intergenic
TGACAAAGGCAAAGAAGGAG+GGG 0.573076 5_4:+32937332 None:intergenic
CACGAGCAGCGGGAACATCA+TGG 0.574919 5_4:+32934288 None:intergenic
TCCTGGATGATGGTTACAGA+TGG 0.575655 5_4:-32935019 Msa0848440:CDS
TGGTTTCTCCTCTAGAGCTA+AGG 0.577015 5_4:-32934021 Msa0848440:CDS
TTAAGCCGAAGATCAGATGA+TGG 0.580885 5_4:-32935818 Msa0848440:CDS
AGATGATAATAACAATTCAA+GGG 0.581933 5_4:-32937379 Msa0848440:CDS
AGTAAGAAGAAGGAGAAACA+GGG 0.582152 5_4:+32937304 None:intergenic
TTGAGCAGAGTTCTCACCAA+AGG 0.582395 5_4:-32935457 Msa0848440:CDS
GCTTCCACTTCCACGAGCAG+CGG 0.584039 5_4:+32934277 None:intergenic
ATCATCTTCTAATGCTCTCG+TGG 0.586135 5_4:-32935603 Msa0848440:CDS
AATTCTTCAATATCAATTGG+AGG 0.586744 5_4:-32935491 Msa0848440:CDS
TCATGTAACAGCAACAGCAA+TGG 0.589008 5_4:-32936030 Msa0848440:intron
GACATTGATATCCTGGATGA+TGG 0.594877 5_4:-32935029 Msa0848440:CDS
TGTGGCCTCTGACTCTCAAG+AGG 0.595198 5_4:+32934185 None:intergenic
TAAGAAGAAGGAGAAACAGG+GGG 0.597289 5_4:+32937306 None:intergenic
AGGAACCTGAGGCTAAAAGA+TGG 0.599722 5_4:-32935397 Msa0848440:intron
CATGTGCGATCAAGATTGGA+CGG 0.601440 5_4:-32933636 Msa0848440:three_prime_UTR
AGAAAGAGAAGAGAAAAGGG+TGG 0.602299 5_4:+32937552 None:intergenic
GCATAACAGGAGAATCAAGA+AGG 0.606162 5_4:+32937250 None:intergenic
TTAAGGGCAATCCAAATCCA+AGG 0.610722 5_4:-32934974 Msa0848440:intron
TGGATGATGGTTACAGATGG+AGG 0.611243 5_4:-32935016 Msa0848440:CDS
GAGAATCAAGAAGGTCAGCA+GGG 0.615872 5_4:+32937259 None:intergenic
TTGATGTTGAGAAATGGAAG+GGG 0.618038 5_4:+32937611 None:intergenic
TAAGGCCTCTTGAGAGTCAG+AGG 0.620807 5_4:-32934190 Msa0848440:CDS
GGCAGTGATCACAACTTACG+AGG 0.622530 5_4:-32934321 Msa0848440:CDS
TTGAATGGTGATTGTCCTTG+AGG 0.624194 5_4:+32934155 None:intergenic
TCATCTGAAGAAGCAGCAGA+AGG 0.624295 5_4:+32937396 None:intergenic
TGGTGATGAATTTGATGAAG+AGG 0.626753 5_4:-32935417 Msa0848440:CDS
TTCAACCTTCAGATGCTGCA+GGG 0.627195 5_4:-32934137 Msa0848440:CDS
AGGCCACAACAAGCACCTCA+AGG 0.634387 5_4:-32934170 Msa0848440:CDS
ATGCTAAGCCTCAATGCACA+AGG 0.636500 5_4:-32935637 Msa0848440:CDS
GATGATAATAACAATTCAAG+GGG 0.636553 5_4:-32937378 Msa0848440:CDS
GTAAGAAGAAGGAGAAACAG+GGG 0.638139 5_4:+32937305 None:intergenic
CACTGCCCTTAAATCATGCG+AGG 0.644393 5_4:+32934337 None:intergenic
CACCAAAGGAGTAGATCAGG+TGG 0.653889 5_4:-32935443 Msa0848440:CDS
ATTTGATGAAGAGGAACCTG+AGG 0.654470 5_4:-32935408 Msa0848440:CDS
GACAAAGGCAAAGAAGGAGG+GGG 0.657084 5_4:+32937333 None:intergenic
GATCAGTCATATGCATCACA+TGG 0.661879 5_4:-32935548 Msa0848440:CDS
CCGATCAAGATCAAGACAGA+CGG 0.665097 5_4:+32933546 None:intergenic
TTGATCGCACATGCCAAATG+CGG 0.675232 5_4:+32933646 None:intergenic
GCAGTGATCACAACTTACGA+GGG 0.724264 5_4:-32934320 Msa0848440:CDS
ATTGGATGAACAATTCTGAG+GGG 0.734397 5_4:-32936598 Msa0848440:CDS
TCAGCAGGGCTTAAACCAGG+AGG 0.737654 5_4:+32937273 None:intergenic
CACACCCTAACTGTCCAGTG+AGG 0.744836 5_4:-32934376 Msa0848440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTTTAATCAATTGA+AGG - chr5_4:32934365-32934384 Msa0848440:CDS 10.0%
!!! TTTTTTTTTGTTTTTGGTTT+TGG + chr5_4:32933598-32933617 None:intergenic 15.0%
!!! GAAGTTTTTTTTTTTGTTTT+TGG + chr5_4:32933604-32933623 None:intergenic 15.0%
!!! TTTATGTTATTTTTTGACAT+GGG - chr5_4:32934055-32934074 Msa0848440:CDS 15.0%
!!! TAAGTTTACATAAAATTTTC+AGG - chr5_4:32936038-32936057 Msa0848440:intron 15.0%
!!! ATTTTTTTTTCATTAGTTTG+TGG - chr5_4:32937439-32937458 Msa0848440:CDS 15.0%
!! ATATAAAGAGAGAGAAAAAT+GGG + chr5_4:32933543-32933562 None:intergenic 20.0%
!! AATATAAAGAGAGAGAAAAA+TGG + chr5_4:32933544-32933563 None:intergenic 20.0%
!!! AAAATTTTGATGTTGAGAAA+TGG + chr5_4:32933575-32933594 None:intergenic 20.0%
!! AGATGATAATAACAATTCAA+GGG - chr5_4:32933798-32933817 Msa0848440:three_prime_UTR 20.0%
!! AAAATGAAAGAAACTAACAT+TGG + chr5_4:32933962-32933981 None:intergenic 20.0%
!!! CTTTATGTTATTTTTTGACA+TGG - chr5_4:32934054-32934073 Msa0848440:CDS 20.0%
!!! TTTTCATCATCTATGTTTTA+TGG - chr5_4:32934088-32934107 Msa0848440:CDS 20.0%
!!! TTTCATCATCTATGTTTTAT+GGG - chr5_4:32934089-32934108 Msa0848440:CDS 20.0%
!!! TTTTTTTGACATATGTTCAA+TGG - chr5_4:32934317-32934336 Msa0848440:CDS 20.0%
!! TTATGTTGTTACTGAATATA+TGG - chr5_4:32934471-32934490 Msa0848440:intron 20.0%
!! TATGTTGTTACTGAATATAT+GGG - chr5_4:32934472-32934491 Msa0848440:intron 20.0%
!! GCAATAAATGCTTAAAAAAT+TGG + chr5_4:32934730-32934749 None:intergenic 20.0%
!! GAGATTAAAAAAATTGAAGT+TGG - chr5_4:32934825-32934844 Msa0848440:intron 20.0%
!! AAAACAAGGAATCATATTAA+TGG + chr5_4:32935837-32935856 None:intergenic 20.0%
!! TTAAGAACATCAATAAAACA+AGG + chr5_4:32935851-32935870 None:intergenic 20.0%
!! GCTGATATATTATTAAATTG+TGG - chr5_4:32935965-32935984 Msa0848440:CDS 20.0%
!! ATATTATTAAATTGTGGTTG+TGG - chr5_4:32935971-32935990 Msa0848440:CDS 20.0%
!!! TGCAATTTAAAACTATATGT+AGG - chr5_4:32935996-32936015 Msa0848440:CDS 20.0%
!!! TATATGTAGGTTTTATTTCA+TGG - chr5_4:32936009-32936028 Msa0848440:CDS 20.0%
!!! AAAATTTTCAGGAAAAATGA+AGG - chr5_4:32936049-32936068 Msa0848440:intron 20.0%
!! AAATATTACTTAGTCAAATG+TGG - chr5_4:32936353-32936372 Msa0848440:intron 20.0%
!! AGAAATAACCAAATTAGAAA+AGG + chr5_4:32936502-32936521 None:intergenic 20.0%
!!! TTTCTAATTTGGTTATTTCT+TGG - chr5_4:32936502-32936521 Msa0848440:CDS 20.0%
!!! GTGTTTAATTTATGATTTGT+AGG - chr5_4:32936762-32936781 Msa0848440:intron 20.0%
!!! TTTCATTTTTAGTAGATACA+TGG - chr5_4:32937231-32937250 Msa0848440:intron 20.0%
!! CAAAAAACAAATGCAATAAA+TGG + chr5_4:32937324-32937343 None:intergenic 20.0%
!!! CATTTATTGCATTTGTTTTT+TGG - chr5_4:32937322-32937341 Msa0848440:CDS 20.0%
!!! TTTTCTTGTAAAGTTTATAC+AGG - chr5_4:32937355-32937374 Msa0848440:CDS 20.0%
!! CTTCATATTTAATCATTTGT+GGG - chr5_4:32937490-32937509 Msa0848440:CDS 20.0%
!! AGATCTTATGATTTGAATTA+TGG + chr5_4:32937608-32937627 None:intergenic 20.0%
! ATAAGAAAGAGAAGAGAAAA+GGG + chr5_4:32933631-32933650 None:intergenic 25.0%
! CAGATGATAATAACAATTCA+AGG - chr5_4:32933797-32933816 Msa0848440:three_prime_UTR 25.0%
! GATGATAATAACAATTCAAG+GGG - chr5_4:32933799-32933818 Msa0848440:three_prime_UTR 25.0%
!!! AGATTGTTCTTTTTTGTGTT+TGG - chr5_4:32934206-32934225 Msa0848440:CDS 25.0%
!!! AAGGAAAGTTTAGACTTTTT+TGG - chr5_4:32934271-32934290 Msa0848440:CDS 25.0%
! TTAAGCATTTATTGCATGTT+TGG - chr5_4:32934735-32934754 Msa0848440:intron 25.0%
!!! CACATTATTTTTGTTGGATT+TGG + chr5_4:32935046-32935065 None:intergenic 25.0%
!!! GTTGATCACATTATTTTTGT+TGG + chr5_4:32935052-32935071 None:intergenic 25.0%
!! ACCTATGTCTTTTATCTTAT+TGG - chr5_4:32935079-32935098 Msa0848440:CDS 25.0%
! ACCAATAAGATAAAAGACAT+AGG + chr5_4:32935083-32935102 None:intergenic 25.0%
! AGTTACTGAGATAGTTTATA+AGG - chr5_4:32935505-32935524 Msa0848440:CDS 25.0%
! GTTACTGAGATAGTTTATAA+GGG - chr5_4:32935506-32935525 Msa0848440:CDS 25.0%
!! ATTTCATTGATTGGATTAAC+AGG + chr5_4:32935605-32935624 None:intergenic 25.0%
! ATTGATATTGAAGAATTCTC+AGG + chr5_4:32935683-32935702 None:intergenic 25.0%
! GAGAATTCTTCAATATCAAT+TGG - chr5_4:32935683-32935702 Msa0848440:CDS 25.0%
! AATTCTTCAATATCAATTGG+AGG - chr5_4:32935686-32935705 Msa0848440:CDS 25.0%
!! TGCATTTTACTTCAACATAA+AGG + chr5_4:32935910-32935929 None:intergenic 25.0%
! TTTATGTTGAAGTAAAATGC+AGG - chr5_4:32935909-32935928 Msa0848440:CDS 25.0%
! AAAAATGAAGGTGAAAATGA+GGG - chr5_4:32936061-32936080 Msa0848440:intron 25.0%
! ATAATTTCATACCTTGGATT+TGG + chr5_4:32936217-32936236 None:intergenic 25.0%
! AAGTGAATAATTTCATACCT+TGG + chr5_4:32936223-32936242 None:intergenic 25.0%
!! TACTACTACTAGTTAATTTG+AGG - chr5_4:32936290-32936309 Msa0848440:intron 25.0%
!! TTAATTTGAGGATTCAATGA+TGG - chr5_4:32936302-32936321 Msa0848440:intron 25.0%
! ATATTTGTAAACTGCTATCA+TGG + chr5_4:32936339-32936358 None:intergenic 25.0%
!!! TTTGTTTCTCTATCTGTTTT+AGG - chr5_4:32936406-32936425 Msa0848440:intron 25.0%
!!! CATTATTGCTTGTTTCTTTT+TGG - chr5_4:32936437-32936456 Msa0848440:intron 25.0%
!!! ATTTTTAGTAGATACATGGA+AGG - chr5_4:32937235-32937254 Msa0848440:intron 25.0%
! TTGTAAAGTTTATACAGGAT+GGG - chr5_4:32937360-32937379 Msa0848440:CDS 25.0%
!!! CTTTTATTTTCCAATACACA+AGG - chr5_4:32937407-32937426 Msa0848440:CDS 25.0%
! GCTTCATATTTAATCATTTG+TGG - chr5_4:32937489-32937508 Msa0848440:CDS 25.0%
TTTGATGTTGAGAAATGGAA+GGG + chr5_4:32933570-32933589 None:intergenic 30.0%
! TTTTGATGTTGAGAAATGGA+AGG + chr5_4:32933571-32933590 None:intergenic 30.0%
CATAAGAAAGAGAAGAGAAA+AGG + chr5_4:32933632-32933651 None:intergenic 30.0%
! CTTTTCTCTTCTCTTTCTTA+TGG - chr5_4:32933630-32933649 Msa0848440:three_prime_UTR 30.0%
AGAAAGTTGTTGACATGAAA+GGG + chr5_4:32933744-32933763 None:intergenic 30.0%
GCTAAGAAAAGTTTGAACAA+AGG - chr5_4:32934252-32934271 Msa0848440:CDS 30.0%
AATTGGATGAACAATTCTGA+GGG - chr5_4:32934578-32934597 Msa0848440:intron 30.0%
TGATGATTGAAAAGTTGTTG+TGG + chr5_4:32934675-32934694 None:intergenic 30.0%
! ACTTTTCAATCATCAACTGT+TGG - chr5_4:32934680-32934699 Msa0848440:intron 30.0%
TGTAGTCAGTACATTATTGA+CGG - chr5_4:32934879-32934898 Msa0848440:intron 30.0%
TTCAAAACATCGATGATCAT+TGG + chr5_4:32935005-32935024 None:intergenic 30.0%
ATATGGACAAAAGCAAGTTA+AGG - chr5_4:32935397-32935416 Msa0848440:intron 30.0%
TATGGACAAAAGCAAGTTAA+GGG - chr5_4:32935398-32935417 Msa0848440:CDS 30.0%
AAAGTTGAGAGATCAATTGA+GGG - chr5_4:32935479-32935498 Msa0848440:CDS 30.0%
TGATCATGGATTTCATTGAT+TGG + chr5_4:32935614-32935633 None:intergenic 30.0%
ATGTTCTTAAATTGCTGATG+CGG - chr5_4:32935861-32935880 Msa0848440:CDS 30.0%
GAAAAATGAAGGTGAAAATG+AGG - chr5_4:32936060-32936079 Msa0848440:intron 30.0%
ATATGGACAGAAAGTTGTTA+AGG - chr5_4:32936186-32936205 Msa0848440:intron 30.0%
TATGGACAGAAAGTTGTTAA+GGG - chr5_4:32936187-32936206 Msa0848440:intron 30.0%
!! CTTTTTGGAAACTCTACTAT+AGG - chr5_4:32936452-32936471 Msa0848440:intron 30.0%
TTAGAAAAGGCAAGGAAAAT+TGG + chr5_4:32936489-32936508 None:intergenic 30.0%
! TTTCCTTGCCTTTTCTAATT+TGG - chr5_4:32936491-32936510 Msa0848440:CDS 30.0%
TAACCAAATTAGAAAAGGCA+AGG + chr5_4:32936497-32936516 None:intergenic 30.0%
!! GGTTATTTCTTGGTCAAATT+TGG - chr5_4:32936512-32936531 Msa0848440:CDS 30.0%
ATGTTGTGTTCGTTCTATAT+CGG - chr5_4:32936706-32936725 Msa0848440:intron 30.0%
TTGAGAATCCATAATTTCCT+TGG + chr5_4:32937066-32937085 None:intergenic 30.0%
AAGGAAATTATGGATTCTCA+AGG - chr5_4:32937065-32937084 Msa0848440:intron 30.0%
! CTCAAGGTTTGATAATCAAA+TGG - chr5_4:32937081-32937100 Msa0848440:intron 30.0%
!!! GCATTTGTTTTTTGGATGTT+TGG - chr5_4:32937330-32937349 Msa0848440:CDS 30.0%
CTTGTAAAGTTTATACAGGA+TGG - chr5_4:32937359-32937378 Msa0848440:CDS 30.0%
!! TTAATCATTTGTGGGTTGAT+TGG - chr5_4:32937498-32937517 Msa0848440:CDS 30.0%
TTGATGTTGAGAAATGGAAG+GGG + chr5_4:32933569-32933588 None:intergenic 35.0%
GAGAAAGTTGTTGACATGAA+AGG + chr5_4:32933745-32933764 None:intergenic 35.0%
AGTAAGAAGAAGGAGAAACA+GGG + chr5_4:32933876-32933895 None:intergenic 35.0%
AAGTAAGAAGAAGGAGAAAC+AGG + chr5_4:32933877-32933896 None:intergenic 35.0%
GGAATAGCAAAGTAAGAAGA+AGG + chr5_4:32933886-32933905 None:intergenic 35.0%
TTGGAAGAGTTAAGCATAAC+AGG + chr5_4:32933943-32933962 None:intergenic 35.0%
CAATTGGATGAACAATTCTG+AGG - chr5_4:32934577-32934596 Msa0848440:intron 35.0%
ATTGGATGAACAATTCTGAG+GGG - chr5_4:32934579-32934598 Msa0848440:intron 35.0%
! TCTTTTCAAACCCAACAACA+AGG - chr5_4:32934629-32934648 Msa0848440:intron 35.0%
! CTTTTCAAACCCAACAACAA+GGG - chr5_4:32934630-32934649 Msa0848440:intron 35.0%
TTTCAATCATCAACTGTTGG+TGG - chr5_4:32934683-32934702 Msa0848440:intron 35.0%
!! AAATCCATTGTTGGTGTTGT+TGG + chr5_4:32935291-32935310 None:intergenic 35.0%
GTCTGATTGAAATCCATTGT+TGG + chr5_4:32935300-32935319 None:intergenic 35.0%
TGTATCCATCATCTGATCTT+CGG + chr5_4:32935367-32935386 None:intergenic 35.0%
!! GATCAGATGATGGATACAAT+TGG - chr5_4:32935369-32935388 Msa0848440:intron 35.0%
GGATACAATTGGCGAAAATA+TGG - chr5_4:32935380-32935399 Msa0848440:intron 35.0%
GTGCATTTGTAGTAACTTCT+CGG + chr5_4:32935434-32935453 None:intergenic 35.0%
TCTTCTTAGTAGGACAGTTA+GGG + chr5_4:32935460-32935479 None:intergenic 35.0%
TTCTTCTTAGTAGGACAGTT+AGG + chr5_4:32935461-32935480 None:intergenic 35.0%
CTCTCAACTTTCTTCTTAGT+AGG + chr5_4:32935470-32935489 None:intergenic 35.0%
GAAAGTTGAGAGATCAATTG+AGG - chr5_4:32935478-32935497 Msa0848440:CDS 35.0%
TCATATGCATCACATGGTAA+TGG - chr5_4:32935635-32935654 Msa0848440:CDS 35.0%
!! ATCACATGGTAATGGACAAA+TGG - chr5_4:32935643-32935662 Msa0848440:CDS 35.0%
! TGGTGATGAATTTGATGAAG+AGG - chr5_4:32935760-32935779 Msa0848440:CDS 35.0%
! ATTTACCATCTTTTAGCCTC+AGG + chr5_4:32935788-32935807 None:intergenic 35.0%
AACAAGTGACATTGATATCC+TGG - chr5_4:32936141-32936160 Msa0848440:intron 35.0%
TTTGGATTTGAAGGGTTGTT+TGG + chr5_4:32936947-32936966 None:intergenic 35.0%
CAGCATTGTTTGGATTTGAA+GGG + chr5_4:32936955-32936974 None:intergenic 35.0%
!! TGCTGTTGTTGATTCATGTA+AGG + chr5_4:32937109-32937128 None:intergenic 35.0%
CAACAACAAATGGCTGAAAA+TGG - chr5_4:32937136-32937155 Msa0848440:intron 35.0%
TCAAGGAACATGTCATCTTT+AGG + chr5_4:32937187-32937206 None:intergenic 35.0%
TTAGTAGATACATGGAAGGT+TGG - chr5_4:32937239-32937258 Msa0848440:CDS 35.0%
! ACATGGAAGGTTGGAAATTT+TGG - chr5_4:32937248-32937267 Msa0848440:CDS 35.0%
!! AGGTTGGAAATTTTGGAAAG+TGG - chr5_4:32937255-32937274 Msa0848440:CDS 35.0%
!! GGTTGGAAATTTTGGAAAGT+GGG - chr5_4:32937256-32937275 Msa0848440:CDS 35.0%
!! AAATTTTGGAAAGTGGGTCT+AGG - chr5_4:32937262-32937281 Msa0848440:CDS 35.0%
! AAGTTTATACAGGATGGGTT+TGG - chr5_4:32937365-32937384 Msa0848440:CDS 35.0%
TGCACAAAAACCTTGTGTAT+TGG + chr5_4:32937420-32937439 None:intergenic 35.0%
AGAAAGAGAAGAGAAAAGGG+TGG + chr5_4:32933628-32933647 None:intergenic 40.0%
!! GGGGGTGTAGACTTAAATTT+TGG + chr5_4:32933829-32933848 None:intergenic 40.0%
TAAGAAGAAGGAGAAACAGG+GGG + chr5_4:32933874-32933893 None:intergenic 40.0%
GTAAGAAGAAGGAGAAACAG+GGG + chr5_4:32933875-32933894 None:intergenic 40.0%
!! TCTTACTTTGCTATTCCTCC+TGG - chr5_4:32933889-32933908 Msa0848440:three_prime_UTR 40.0%
GCATAACAGGAGAATCAAGA+AGG + chr5_4:32933930-32933949 None:intergenic 40.0%
! ATTTTGCCATCACCTACAAC+TGG - chr5_4:32934530-32934549 Msa0848440:intron 40.0%
CTGCTCAAAGCAACTACAAT+TGG - chr5_4:32934561-32934580 Msa0848440:intron 40.0%
GACTGTCCAATCTAGACTAA+TGG + chr5_4:32934906-32934925 None:intergenic 40.0%
TCATGTAACAGCAACAGCAA+TGG - chr5_4:32935147-32935166 Msa0848440:intron 40.0%
GTTTGAACACTAGCAATCTC+AGG + chr5_4:32935269-32935288 None:intergenic 40.0%
CAAACCAACAACACCAACAA+TGG - chr5_4:32935284-32935303 Msa0848440:intron 40.0%
ATCATCTGATCTTCGGCTTA+AGG + chr5_4:32935360-32935379 None:intergenic 40.0%
TTAAGCCGAAGATCAGATGA+TGG - chr5_4:32935359-32935378 Msa0848440:intron 40.0%
ATCATCTTCTAATGCTCTCG+TGG - chr5_4:32935574-32935593 Msa0848440:CDS 40.0%
GTGATGCATATGACTGATCA+TGG + chr5_4:32935628-32935647 None:intergenic 40.0%
GATCAGTCATATGCATCACA+TGG - chr5_4:32935629-32935648 Msa0848440:CDS 40.0%
ATTTGATGAAGAGGAACCTG+AGG - chr5_4:32935769-32935788 Msa0848440:CDS 40.0%
AAGTAAAATGCAGGCTGATG+CGG - chr5_4:32935918-32935937 Msa0848440:CDS 40.0%
GTTGTCTGAACTACAACTCT+AGG + chr5_4:32936124-32936143 None:intergenic 40.0%
GACATTGATATCCTGGATGA+TGG - chr5_4:32936148-32936167 Msa0848440:intron 40.0%
GGTTACAGATGGAGGAAATA+TGG - chr5_4:32936169-32936188 Msa0848440:intron 40.0%
TTAAGGGCAATCCAAATCCA+AGG - chr5_4:32936203-32936222 Msa0848440:intron 40.0%
TAAACTGCTATCATGGAGTG+AGG + chr5_4:32936332-32936351 None:intergenic 40.0%
AAGGCAAGGAAAATTGGTAC+AGG + chr5_4:32936483-32936502 None:intergenic 40.0%
CATATCTGTCAGTGTCATGT+CGG + chr5_4:32936634-32936653 None:intergenic 40.0%
TTTGAAGGGTTGTTTGGCAT+TGG + chr5_4:32936941-32936960 None:intergenic 40.0%
GCAGCATTGTTTGGATTTGA+AGG + chr5_4:32936956-32936975 None:intergenic 40.0%
TTGAATGGTGATTGTCCTTG+AGG + chr5_4:32937025-32937044 None:intergenic 40.0%
TTCAGCACAGCAAAGATTCA+AGG + chr5_4:32937204-32937223 None:intergenic 40.0%
! TATACAGGATGGGTTTGGTT+TGG - chr5_4:32937370-32937389 Msa0848440:CDS 40.0%
!! CATTAGTTTGTGGCTTCTCT+TGG - chr5_4:32937449-32937468 Msa0848440:CDS 40.0%
TGGATGTAGTTAACCGCATT+TGG - chr5_4:32937518-32937537 Msa0848440:CDS 40.0%
TCATCTGAAGAAGCAGCAGA+AGG + chr5_4:32933784-32933803 None:intergenic 45.0%
TGACAAAGGCAAAGAAGGAG+GGG + chr5_4:32933848-32933867 None:intergenic 45.0%
GTGACAAAGGCAAAGAAGGA+GGG + chr5_4:32933849-32933868 None:intergenic 45.0%
GAGAATCAAGAAGGTCAGCA+GGG + chr5_4:32933921-32933940 None:intergenic 45.0%
! AAAGCACCAGTTGTAGGTGA+TGG + chr5_4:32934539-32934558 None:intergenic 45.0%
GGGGAATCAGCAAATGAGAA+AGG - chr5_4:32934598-32934617 Msa0848440:intron 45.0%
! GACGGTCCATTAGTCTAGAT+TGG - chr5_4:32934897-32934916 Msa0848440:intron 45.0%
!! AAGGTTTGAGTTGGTTGCTG+TGG + chr5_4:32935341-32935360 None:intergenic 45.0%
CTTCGGCTTAAGGTTTGAGT+TGG + chr5_4:32935350-32935369 None:intergenic 45.0%
ATGCTAAGCCTCAATGCACA+AGG - chr5_4:32935540-32935559 Msa0848440:CDS 45.0%
GAGTTTCTCCTTGTGCATTG+AGG + chr5_4:32935551-32935570 None:intergenic 45.0%
TTGAGCAGAGTTCTCACCAA+AGG - chr5_4:32935720-32935739 Msa0848440:CDS 45.0%
TCTCACCAAAGGAGTAGATC+AGG - chr5_4:32935731-32935750 Msa0848440:CDS 45.0%
AGGAACCTGAGGCTAAAAGA+TGG - chr5_4:32935780-32935799 Msa0848440:CDS 45.0%
ACGACATCACAACTGCAATG+CGG + chr5_4:32935944-32935963 None:intergenic 45.0%
TCTCTCACAGTTCTACTTGC+AGG + chr5_4:32936100-32936119 None:intergenic 45.0%
! TCCTGGATGATGGTTACAGA+TGG - chr5_4:32936158-32936177 Msa0848440:intron 45.0%
TCCATCTGTAACCATCATCC+AGG + chr5_4:32936162-32936181 None:intergenic 45.0%
! TGGATGATGGTTACAGATGG+AGG - chr5_4:32936161-32936180 Msa0848440:intron 45.0%
CGACATGACACTGACAGATA+TGG - chr5_4:32936632-32936651 Msa0848440:CDS 45.0%
AACGTGCCTCGCATGATTTA+AGG - chr5_4:32936834-32936853 Msa0848440:intron 45.0%
ACGTGCCTCGCATGATTTAA+GGG - chr5_4:32936835-32936854 Msa0848440:intron 45.0%
GCAGTGATCACAACTTACGA+GGG - chr5_4:32936857-32936876 Msa0848440:intron 45.0%
! GCATTGGTCTGTTCACAGAA+TGG + chr5_4:32936925-32936944 None:intergenic 45.0%
TGCAGCATCTGAAGGTTGAA+TGG + chr5_4:32937040-32937059 None:intergenic 45.0%
ATTCAACCTTCAGATGCTGC+AGG - chr5_4:32937039-32937058 Msa0848440:intron 45.0%
TTCAACCTTCAGATGCTGCA+GGG - chr5_4:32937040-32937059 Msa0848440:intron 45.0%
GCAGCAGCAACAACAACAAA+TGG - chr5_4:32937126-32937145 Msa0848440:intron 45.0%
!! TGGTTTCTCCTCTAGAGCTA+AGG - chr5_4:32937156-32937175 Msa0848440:intron 45.0%
!! AGGTTCTTCCTTAGCTCTAG+AGG + chr5_4:32937167-32937186 None:intergenic 45.0%
!! GGCTTCTCTTGGCTTTAGTT+AGG - chr5_4:32937460-32937479 Msa0848440:CDS 45.0%
TTGATCGCACATGCCAAATG+CGG + chr5_4:32937534-32937553 None:intergenic 45.0%
TTGGCATGTGCGATCAAGAT+TGG - chr5_4:32937537-32937556 Msa0848440:exon 45.0%
CATGTGCGATCAAGATTGGA+CGG - chr5_4:32937541-32937560 Msa0848440:exon 45.0%
CCGATCAAGATCAAGACAGA+CGG + chr5_4:32937634-32937653 None:intergenic 45.0%
CCGTCTGTCTTGATCTTGAT+CGG - chr5_4:32937631-32937650 Msa0848440:five_prime_UTR 45.0%
GACAAAGGCAAAGAAGGAGG+GGG + chr5_4:32933847-32933866 None:intergenic 50.0%
GGTGACAAAGGCAAAGAAGG+AGG + chr5_4:32933850-32933869 None:intergenic 50.0%
GGAGGTGACAAAGGCAAAGA+AGG + chr5_4:32933853-32933872 None:intergenic 50.0%
GGAGAATCAAGAAGGTCAGC+AGG + chr5_4:32933922-32933941 None:intergenic 50.0%
!! GCAGCAAAAGCACCAGTTGT+AGG + chr5_4:32934545-32934564 None:intergenic 50.0%
TTGCTGTGGTTGCTGGTAAC+TGG + chr5_4:32935327-32935346 None:intergenic 50.0%
CACCAAAGGAGTAGATCAGG+TGG - chr5_4:32935734-32935753 Msa0848440:CDS 50.0%
CACCACCTGATCTACTCCTT+TGG + chr5_4:32935739-32935758 None:intergenic 50.0%
GCTTCCTCACTGGACAGTTA+GGG + chr5_4:32936808-32936827 None:intergenic 50.0%
TGCTTCCTCACTGGACAGTT+AGG + chr5_4:32936809-32936828 None:intergenic 50.0%
CACTGCCCTTAAATCATGCG+AGG + chr5_4:32936843-32936862 None:intergenic 50.0%
GGCAGTGATCACAACTTACG+AGG - chr5_4:32936856-32936875 Msa0848440:intron 50.0%
TCCAAACAATGCTGCAGCCA+TGG - chr5_4:32936961-32936980 Msa0848440:intron 50.0%
CTGACTCTCAAGAGGCCTTA+TGG + chr5_4:32936987-32937006 None:intergenic 50.0%
TAAGGCCTCTTGAGAGTCAG+AGG - chr5_4:32936987-32937006 Msa0848440:intron 50.0%
! TGTCCTTGAGGTGCTTGTTG+TGG + chr5_4:32937013-32937032 None:intergenic 50.0%
CTGCAGGGCCAAGGAAATTA+TGG - chr5_4:32937055-32937074 Msa0848440:intron 50.0%
GAAACAGGGGGAGGTGACAA+AGG + chr5_4:32933862-32933881 None:intergenic 55.0%
GAAGAAGGAGAAACAGGGGG+AGG + chr5_4:32933871-32933890 None:intergenic 55.0%
TCAGCAGGGCTTAAACCAGG+AGG + chr5_4:32933907-32933926 None:intergenic 55.0%
AGGTCAGCAGGGCTTAAACC+AGG + chr5_4:32933910-32933929 None:intergenic 55.0%
!! AGCAGCAGGCCCTTGTTGTT+GGG + chr5_4:32934642-32934661 None:intergenic 55.0%
GTGGATGCAGTAACAGCAGC+AGG + chr5_4:32934656-32934675 None:intergenic 55.0%
! GAGTTGGTTGCTGTGGTTGC+TGG + chr5_4:32935334-32935353 None:intergenic 55.0%
AGGAGTAGATCAGGTGGTGC+TGG - chr5_4:32935740-32935759 Msa0848440:CDS 55.0%
CACACCCTAACTGTCCAGTG+AGG - chr5_4:32936801-32936820 Msa0848440:intron 55.0%
CGTTCGACATGCTTCCTCAC+TGG + chr5_4:32936818-32936837 None:intergenic 55.0%
GCCATGGCTGCAGCATTGTT+TGG + chr5_4:32936965-32936984 None:intergenic 55.0%
ATGCTGCAGCCATGGCCATA+AGG - chr5_4:32936969-32936988 Msa0848440:intron 55.0%
! CTCAAGAGGCCTTATGGCCA+TGG + chr5_4:32936981-32937000 None:intergenic 55.0%
TGTGGCCTCTGACTCTCAAG+AGG + chr5_4:32936995-32937014 None:intergenic 55.0%
AGGCCACAACAAGCACCTCA+AGG - chr5_4:32937007-32937026 Msa0848440:intron 55.0%
! CAGCAGCAGGCCCTTGTTGT+TGG + chr5_4:32934643-32934662 None:intergenic 60.0%
CACGAGCAGCGGGAACATCA+TGG + chr5_4:32936892-32936911 None:intergenic 60.0%
CATGATGTTCCCGCTGCTCG+TGG - chr5_4:32936890-32936909 Msa0848440:intron 60.0%
CTTCCACTTCCACGAGCAGC+GGG + chr5_4:32936902-32936921 None:intergenic 60.0%
GCTTCCACTTCCACGAGCAG+CGG + chr5_4:32936903-32936922 None:intergenic 60.0%
CTTGGCCCTGCAGCATCTGA+AGG + chr5_4:32937048-32937067 None:intergenic 60.0%
CTTCAGATGCTGCAGGGCCA+AGG - chr5_4:32937046-32937065 Msa0848440:intron 60.0%
GTTCCCGCTGCTCGTGGAAG+TGG - chr5_4:32936896-32936915 Msa0848440:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 32933528 32937671 32933528 ID=Msa0848440;Name=Msa0848440
chr5_4 mRNA 32933528 32937671 32933528 ID=Msa0848440-mRNA-1;Parent=Msa0848440;Name=Msa0848440-mRNA-1;_AED=0.11;_eAED=0.11;_QI=121|1|1|1|1|1|5|449|582
chr5_4 exon 32933528 32934415 32933528 ID=Msa0848440-mRNA-1:exon:11505;Parent=Msa0848440-mRNA-1
chr5_4 exon 32934975 32935139 32934975 ID=Msa0848440-mRNA-1:exon:11504;Parent=Msa0848440-mRNA-1
chr5_4 exon 32935398 32936041 32935398 ID=Msa0848440-mRNA-1:exon:11503;Parent=Msa0848440-mRNA-1
chr5_4 exon 32936484 32936669 32936484 ID=Msa0848440-mRNA-1:exon:11502;Parent=Msa0848440-mRNA-1
chr5_4 exon 32937236 32937671 32937236 ID=Msa0848440-mRNA-1:exon:11501;Parent=Msa0848440-mRNA-1
chr5_4 five_prime_UTR 32937551 32937671 32937551 ID=Msa0848440-mRNA-1:five_prime_utr;Parent=Msa0848440-mRNA-1
chr5_4 CDS 32937236 32937550 32937236 ID=Msa0848440-mRNA-1:cds;Parent=Msa0848440-mRNA-1
chr5_4 CDS 32936484 32936669 32936484 ID=Msa0848440-mRNA-1:cds;Parent=Msa0848440-mRNA-1
chr5_4 CDS 32935398 32936041 32935398 ID=Msa0848440-mRNA-1:cds;Parent=Msa0848440-mRNA-1
chr5_4 CDS 32934975 32935139 32934975 ID=Msa0848440-mRNA-1:cds;Parent=Msa0848440-mRNA-1
chr5_4 CDS 32933977 32934415 32933977 ID=Msa0848440-mRNA-1:cds;Parent=Msa0848440-mRNA-1
chr5_4 three_prime_UTR 32933528 32933976 32933528 ID=Msa0848440-mRNA-1:three_prime_utr;Parent=Msa0848440-mRNA-1
Gene Sequence

>Msa0848440

ATGGCATCTTCATCAACAACTAGTTTTGAAAATAATAATAATAATAATCAAAACTCTTTGAACTCATTCAACAATTTCACTTTCTCAACTCACCCTTTCATGTCAACAACTTTCTCTGATCTTTTAGCTTCTCCTTCTGCTGCTTCTTCAGATGATAATAACAATTCAAGGGGTGTGCCAAAATTTAAGTCTACACCCCCTCCTTCTTTGCCTTTGTCACCTCCCCCTGTTTCTCCTTCTTCTTACTTTGCTATTCCTCCTGGTTTAAGCCCTGCTGACCTTCTTGATTCTCCTGTTATGCTTAACTCTTCCAATATTTTGCCATCACCTACAACTGGTGCTTTTGCTGCTCAAAGCAACTACAATTGGATGAACAATTCTGAGGGGAATCAGCAAATGAGAAAGGAAAATTTCTCTTTTCAAACCCAACAACAAGGGCCTGCTGCTGTTACTGCATCCACAACAACTTTTCAATCATCAACTGTTGGTGGAGTTCAACAACAACAGCAATGGAGTTATCAAGAGAACACAAATCAGAATGCTTTTTCATCTGAAAAGAATATGATACAAACTACTGAGAACAACAACTCTTCAATGCAGAGTTTTTCACCTGAGATTGCTAGTGTTCAAACCAACAACACCAACAATGGATTTCAATCAGACTACTCCAGTTACCAGCAACCACAGCAACCAACTCAAACCTTAAGCCGAAGATCAGATGATGGATACAATTGGCGAAAATATGGACAAAAGCAAGTTAAGGGAAGTGAAAATCCGAGAAGTTACTACAAATGCACTTACCCTAACTGTCCTACTAAGAAGAAAGTTGAGAGATCAATTGAGGGACAAGTTACTGAGATAGTTTATAAGGGTACTCATAATCATGCTAAGCCTCAATGCACAAGGAGAAACTCGTCATCATCTTCTAATGCTCTCGTGGTTGTTCCTGTTAATCCAATCAATGAAATCCATGATCAGTCATATGCATCACATGGTAATGGACAAATGGATTCTGCTGCTACTCCTGAGAATTCTTCAATATCAATTGGAGGTGATGATGATTTTGAGCAGAGTTCTCACCAAAGGAGTAGATCAGGTGGTGCTGGTGATGAATTTGATGAAGAGGAACCTGAGGCTAAAAGATGGAAAAATGAAGGTGAAAATGAGGGTATATCAGCACAACCTGCAAGTAGAACTGTGAGAGAACCTAGAGTTGTAGTTCAGACAACAAGTGACATTGATATCCTGGATGATGGTTACAGATGGAGGAAATATGGACAGAAAGTTGTTAAGGGCAATCCAAATCCAAGGAGTTACTACAAATGCACACACCCTAACTGTCCAGTGAGGAAGCATGTCGAACGTGCCTCGCATGATTTAAGGGCAGTGATCACAACTTACGAGGGAAAGCATAACCATGATGTTCCCGCTGCTCGTGGAAGTGGAAGCCATTCTGTGAACAGACCAATGCCAAACAACCCTTCAAATCCAAACAATGCTGCAGCCATGGCCATAAGGCCTCTTGAGAGTCAGAGGCCACAACAAGCACCTCAAGGACAATCACCATTCAACCTTCAGATGCTGCAGGGCCAAGGAAATTATGGATTCTCAAGGTTTGATAATCAAATGGTGCCTTACATGAATCAACAACAGCAGCAGCAACAACAACAAATGGCTGAAAATGGTTTCTCCTCTAGAGCTAAGGAAGAACCTAAAGATGACATGTTCCTTGAATCTTTGCTGTGCTGA

Protein sequence

>Msa0848440

MASSSTTSFENNNNNNQNSLNSFNNFTFSTHPFMSTTFSDLLASPSAASSDDNNNSRGVPKFKSTPPPSLPLSPPPVSPSSYFAIPPGLSPADLLDSPVMLNSSNILPSPTTGAFAAQSNYNWMNNSEGNQQMRKENFSFQTQQQGPAAVTASTTTFQSSTVGGVQQQQQWSYQENTNQNAFSSEKNMIQTTENNNSSMQSFSPEIASVQTNNTNNGFQSDYSSYQQPQQPTQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSIEGQVTEIVYKGTHNHAKPQCTRRNSSSSSNALVVVPVNPINEIHDQSYASHGNGQMDSAATPENSSISIGGDDDFEQSSHQRSRSGGAGDEFDEEEPEAKRWKNEGENEGISAQPASRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPNCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPMPNNPSNPNNAAAMAIRPLESQRPQQAPQGQSPFNLQMLQGQGNYGFSRFDNQMVPYMNQQQQQQQQQMAENGFSSRAKEEPKDDMFLESLLC*