Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474860 | XP_003602771.2 | 96.714 | 426 | 14 | 0 | 1 | 426 | 1 | 426 | 0.0 | 864 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474860 | sp|Q9M306|ZDH10_ARATH | 54.206 | 428 | 173 | 6 | 19 | 423 | 26 | 453 | 5.40e-162 | 468 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474860 | G7J3C1 | 96.714 | 426 | 14 | 0 | 1 | 426 | 1 | 426 | 0.0 | 864 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0377050 | Msa0474860 | 0.983553 | 4.664789e-158 | -8.615850e-47 |
| Msa0378910 | Msa0474860 | 0.997506 | 9.156674e-244 | -8.615850e-47 |
| Msa0428510 | Msa0474860 | 0.928247 | 3.778462e-92 | -8.615850e-47 |
| Msa0474860 | Msa0734950 | 0.800303 | 1.535365e-48 | -8.615850e-47 |
| Msa0474860 | Msa1395390 | 0.808088 | 3.677974e-50 | -8.615850e-47 |
| Msa0352120 | Msa0474860 | -0.802775 | 4.779577e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474860 | MtrunA17_Chr3g0131931 | 96.714 | 426 | 14 | 0 | 1 | 426 | 1 | 426 | 0.0 | 864 |
| Msa0474860 | MtrunA17_Chr6g0462021 | 54.567 | 427 | 175 | 4 | 4 | 413 | 5 | 429 | 1.82e-166 | 474 |
| Msa0474860 | MtrunA17_Chr7g0251761 | 53.687 | 434 | 179 | 5 | 4 | 424 | 5 | 429 | 8.16e-152 | 437 |
| Msa0474860 | MtrunA17_Chr1g0201631 | 48.139 | 403 | 179 | 6 | 21 | 397 | 5 | 403 | 1.72e-133 | 390 |
| Msa0474860 | MtrunA17_Chr6g0464751 | 49.383 | 405 | 173 | 8 | 21 | 397 | 5 | 405 | 6.27e-130 | 381 |
| Msa0474860 | MtrunA17_Chr7g0255151 | 51.438 | 313 | 138 | 4 | 11 | 315 | 15 | 321 | 1.21e-107 | 325 |
| Msa0474860 | MtrunA17_Chr7g0255161 | 53.968 | 252 | 97 | 4 | 79 | 315 | 12 | 259 | 9.45e-90 | 276 |
| Msa0474860 | MtrunA17_Chr5g0406311 | 36.264 | 182 | 97 | 6 | 147 | 321 | 164 | 333 | 1.61e-21 | 95.1 |
| Msa0474860 | MtrunA17_Chr4g0064931 | 28.968 | 252 | 150 | 7 | 86 | 325 | 322 | 556 | 5.44e-21 | 95.5 |
| Msa0474860 | MtrunA17_Chr7g0273371 | 28.718 | 195 | 112 | 3 | 151 | 318 | 160 | 354 | 8.53e-20 | 90.9 |
| Msa0474860 | MtrunA17_Chr4g0011001 | 29.963 | 267 | 142 | 10 | 51 | 297 | 27 | 268 | 9.15e-20 | 89.4 |
| Msa0474860 | MtrunA17_Chr1g0211241 | 30.568 | 229 | 122 | 7 | 87 | 307 | 416 | 615 | 1.43e-19 | 91.3 |
| Msa0474860 | MtrunA17_Chr1g0199411 | 28.440 | 218 | 115 | 6 | 87 | 292 | 53 | 241 | 1.61e-18 | 85.1 |
| Msa0474860 | MtrunA17_Chr4g0009911 | 27.650 | 217 | 110 | 6 | 103 | 301 | 76 | 263 | 2.65e-17 | 82.0 |
| Msa0474860 | MtrunA17_Chr4g0049351 | 32.903 | 155 | 89 | 5 | 151 | 292 | 362 | 514 | 4.79e-17 | 83.2 |
| Msa0474860 | MtrunA17_Chr1g0211231 | 29.487 | 234 | 110 | 9 | 86 | 307 | 340 | 530 | 1.31e-16 | 82.0 |
| Msa0474860 | MtrunA17_Chr7g0276121 | 29.245 | 212 | 110 | 10 | 103 | 297 | 83 | 271 | 2.55e-14 | 73.6 |
| Msa0474860 | MtrunA17_Chr4g0042821 | 32.824 | 131 | 78 | 3 | 152 | 272 | 180 | 310 | 1.01e-12 | 70.1 |
| Msa0474860 | MtrunA17_Chr3g0144181 | 28.788 | 132 | 82 | 3 | 152 | 272 | 149 | 279 | 6.04e-11 | 64.3 |
| Msa0474860 | MtrunA17_Chr1g0193941 | 26.866 | 134 | 86 | 4 | 150 | 272 | 155 | 287 | 6.96e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474860 | AT3G48760.1 | 54.206 | 428 | 173 | 6 | 19 | 423 | 26 | 453 | 5.49e-163 | 468 |
| Msa0474860 | AT3G26935.1 | 53.623 | 414 | 168 | 5 | 4 | 397 | 5 | 414 | 9.11e-159 | 455 |
| Msa0474860 | AT5G41060.1 | 55.639 | 399 | 153 | 6 | 6 | 386 | 7 | 399 | 2.08e-154 | 443 |
| Msa0474860 | AT5G41060.2 | 56.684 | 374 | 141 | 5 | 31 | 386 | 14 | 384 | 3.02e-148 | 427 |
| Msa0474860 | AT4G24630.1 | 48.477 | 394 | 186 | 7 | 21 | 399 | 4 | 395 | 2.11e-131 | 384 |
| Msa0474860 | AT5G41060.3 | 56.418 | 335 | 125 | 5 | 70 | 386 | 1 | 332 | 1.93e-129 | 377 |
| Msa0474860 | AT5G41060.4 | 56.418 | 335 | 125 | 5 | 70 | 386 | 1 | 332 | 1.93e-129 | 377 |
| Msa0474860 | AT5G50020.3 | 56.711 | 298 | 127 | 2 | 21 | 316 | 4 | 301 | 3.18e-126 | 372 |
| Msa0474860 | AT5G50020.2 | 56.711 | 298 | 127 | 2 | 21 | 316 | 34 | 331 | 8.07e-126 | 372 |
| Msa0474860 | AT5G50020.1 | 54.698 | 298 | 126 | 3 | 21 | 316 | 4 | 294 | 3.19e-118 | 351 |
| Msa0474860 | AT3G56930.1 | 52.288 | 306 | 140 | 2 | 16 | 315 | 5 | 310 | 2.51e-111 | 336 |
| Msa0474860 | AT5G05070.1 | 52.805 | 303 | 129 | 5 | 20 | 315 | 36 | 331 | 1.98e-108 | 326 |
| Msa0474860 | AT2G40990.1 | 39.474 | 418 | 218 | 9 | 5 | 411 | 12 | 405 | 7.02e-96 | 294 |
| Msa0474860 | AT3G56920.1 | 43.824 | 340 | 172 | 4 | 21 | 357 | 10 | 333 | 1.45e-92 | 283 |
| Msa0474860 | AT3G56930.2 | 47.195 | 303 | 118 | 3 | 19 | 315 | 8 | 274 | 1.33e-89 | 279 |
| Msa0474860 | AT3G51390.2 | 31.048 | 248 | 123 | 6 | 86 | 300 | 73 | 305 | 1.65e-20 | 92.4 |
| Msa0474860 | AT3G51390.1 | 33.684 | 190 | 111 | 4 | 118 | 300 | 129 | 310 | 7.58e-20 | 90.5 |
| Msa0474860 | AT3G60800.1 | 28.358 | 268 | 147 | 8 | 51 | 297 | 27 | 270 | 7.99e-19 | 87.0 |
| Msa0474860 | AT3G04970.3 | 31.973 | 147 | 80 | 2 | 151 | 277 | 73 | 219 | 2.61e-18 | 85.5 |
| Msa0474860 | AT2G14255.1 | 31.818 | 154 | 92 | 4 | 151 | 292 | 363 | 515 | 6.51e-18 | 86.3 |
| Msa0474860 | AT4G22750.1 | 28.346 | 254 | 133 | 10 | 83 | 313 | 54 | 281 | 1.09e-17 | 83.6 |
| Msa0474860 | AT4G00840.1 | 30.634 | 284 | 141 | 14 | 37 | 297 | 5 | 255 | 1.09e-17 | 83.6 |
| Msa0474860 | AT5G04270.1 | 29.651 | 172 | 95 | 3 | 103 | 274 | 66 | 211 | 1.64e-17 | 82.8 |
| Msa0474860 | AT3G04970.1 | 31.973 | 147 | 80 | 2 | 151 | 277 | 160 | 306 | 2.16e-17 | 84.0 |
| Msa0474860 | AT3G09320.1 | 30.275 | 218 | 105 | 7 | 102 | 301 | 66 | 254 | 1.88e-16 | 79.7 |
| Msa0474860 | AT5G20350.1 | 25.581 | 258 | 164 | 8 | 84 | 330 | 315 | 555 | 9.75e-16 | 79.7 |
| Msa0474860 | AT4G00840.2 | 33.735 | 166 | 86 | 7 | 37 | 194 | 5 | 154 | 2.75e-15 | 75.1 |
| Msa0474860 | AT3G04970.2 | 31.690 | 142 | 77 | 2 | 151 | 272 | 160 | 301 | 5.73e-15 | 75.9 |
| Msa0474860 | AT1G69420.1 | 31.298 | 131 | 80 | 2 | 152 | 272 | 164 | 294 | 6.97e-14 | 73.9 |
| Msa0474860 | AT1G69420.2 | 31.298 | 131 | 80 | 2 | 152 | 272 | 164 | 294 | 6.97e-14 | 73.9 |
| Msa0474860 | AT4G01730.1 | 27.820 | 133 | 86 | 2 | 150 | 272 | 157 | 289 | 6.82e-12 | 67.8 |
| Msa0474860 | AT3G22180.1 | 31.061 | 132 | 79 | 5 | 152 | 272 | 173 | 303 | 9.70e-12 | 67.4 |
Find 111 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGATTCTGTTGGTTCTTT+TGG | 0.104120 | 3_3:+77883624 | None:intergenic |
| TCACTTCCATCATAATTATC+TGG | 0.213227 | 3_3:+77884978 | None:intergenic |
| TCAATTAGCCCTTTGTTATA+AGG | 0.231915 | 3_3:+77883711 | None:intergenic |
| CTTGGAGGGAGGTTTATATT+TGG | 0.257102 | 3_3:-77886514 | Msa0474860:CDS |
| CGGCTTGTGTTTCATTGTTT+TGG | 0.260003 | 3_3:-77883189 | Msa0474860:three_prime_UTR |
| GGGAACAAAGCAGCAGAAAA+TGG | 0.266208 | 3_3:-77883413 | Msa0474860:CDS |
| CGAAGGATCAACGGTATTTC+CGG | 0.276497 | 3_3:+77886670 | None:intergenic |
| GACAAGTTGCTTCCTTTCTA+AGG | 0.282513 | 3_3:-77883446 | Msa0474860:CDS |
| CAATTAGCCCTTTGTTATAA+GGG | 0.322127 | 3_3:+77883712 | None:intergenic |
| TTCATTGCTGTCTGGTTTGT+TGG | 0.334463 | 3_3:-77883957 | Msa0474860:CDS |
| ATTCTCAGAGCAACAGTATA+AGG | 0.338816 | 3_3:+77882976 | None:intergenic |
| TTGTTATGTTCGGATTTGAT+AGG | 0.350269 | 3_3:-77883218 | Msa0474860:three_prime_UTR |
| GATTATAAAGACGAGGAATA+TGG | 0.354047 | 3_3:-77883537 | Msa0474860:CDS |
| TCCATTGACAATTACTTCCT+TGG | 0.361235 | 3_3:+77884911 | None:intergenic |
| AAAGCACAGAAAACAGCAAC+AGG | 0.373823 | 3_3:+77886445 | None:intergenic |
| AGTGATACATCTGTGGATTT+AGG | 0.375920 | 3_3:-77883498 | Msa0474860:CDS |
| CTTTCTAAGGCAGTCCTTGT+GGG | 0.391361 | 3_3:-77883433 | Msa0474860:CDS |
| TGTTATAAGGGTTGACTTGT+CGG | 0.392823 | 3_3:+77883724 | None:intergenic |
| CATTGTAAACTGGCATCATA+AGG | 0.394852 | 3_3:+77883580 | None:intergenic |
| TGCTCTGAGAATATAATTGC+CGG | 0.400359 | 3_3:-77882965 | Msa0474860:three_prime_UTR |
| ATTGAATATCCAGAGTGATT+AGG | 0.410341 | 3_3:+77886394 | None:intergenic |
| AGCAAAAGGCATGAACATAA+AGG | 0.422939 | 3_3:+77884075 | None:intergenic |
| GGGGCAGAGTTTGTTATGTT+CGG | 0.427660 | 3_3:-77883228 | Msa0474860:three_prime_UTR |
| TCATCAGCCTCATTGTAAAC+TGG | 0.432467 | 3_3:+77883570 | None:intergenic |
| GTAAATATAGATTTCACATC+AGG | 0.435683 | 3_3:+77886490 | None:intergenic |
| ATTATTAGTGCAATGGAAGC+AGG | 0.437732 | 3_3:+77883987 | None:intergenic |
| AAAACAATGCCGACGTCAAA+TGG | 0.448013 | 3_3:+77882940 | None:intergenic |
| CCATGGGTTGGTCAGTGTAT+TGG | 0.450019 | 3_3:-77884780 | Msa0474860:CDS |
| TTGTGCTGATTAGATATGTA+TGG | 0.451420 | 3_3:+77883919 | None:intergenic |
| GGAACAAAGCAGCAGAAAAT+GGG | 0.455188 | 3_3:-77883412 | Msa0474860:CDS |
| CATGAACATAAAGGCAAAGC+AGG | 0.455937 | 3_3:+77884084 | None:intergenic |
| TATACACATTCATTGCTGTC+TGG | 0.456264 | 3_3:-77883965 | Msa0474860:CDS |
| ATTGCTGTCTGGTTTGTTGG+AGG | 0.458351 | 3_3:-77883954 | Msa0474860:CDS |
| GCTACTGAGTTCGCCGGCGC+CGG | 0.464541 | 3_3:+77886692 | None:intergenic |
| GCAGTATGCTTCACACAGAA+AGG | 0.468722 | 3_3:-77883476 | Msa0474860:CDS |
| AAACAAACATGTAGTAGAAC+CGG | 0.470642 | 3_3:+77884117 | None:intergenic |
| TACTGAGCAATGAGAGCAGC+GGG | 0.473275 | 3_3:+77884839 | None:intergenic |
| CTGACCTCAGGAAGAGATCC+TGG | 0.475106 | 3_3:-77885032 | Msa0474860:CDS |
| CACTTCCATCATAATTATCT+GGG | 0.480034 | 3_3:+77884979 | None:intergenic |
| CACGGCGACAGCGCAATTAC+CGG | 0.481466 | 3_3:-77884136 | Msa0474860:intron |
| CAGTATGCTTCACACAGAAA+GGG | 0.481949 | 3_3:-77883475 | Msa0474860:CDS |
| CTTTGTCTAGATGATTCTGT+TGG | 0.483481 | 3_3:+77883615 | None:intergenic |
| CCTTTCTAAGGCAGTCCTTG+TGG | 0.491773 | 3_3:-77883434 | Msa0474860:CDS |
| GGTTGACTTGTCGGTCATAC+CGG | 0.492971 | 3_3:+77883733 | None:intergenic |
| TCCAAGGAAGTAATTGTCAA+TGG | 0.493913 | 3_3:-77884912 | Msa0474860:CDS |
| CCACTCCCAGATAATTATGA+TGG | 0.500454 | 3_3:-77884984 | Msa0474860:CDS |
| GAATTGCGAGGCACTATGCC+AGG | 0.501439 | 3_3:+77885014 | None:intergenic |
| AGCACAGAAAACAGCAACAG+GGG | 0.504125 | 3_3:+77886447 | None:intergenic |
| AAGATGATGAATAGAAATTG+TGG | 0.507076 | 3_3:-77883057 | Msa0474860:three_prime_UTR |
| TGTTATGTTCGGATTTGATA+GGG | 0.515498 | 3_3:-77883217 | Msa0474860:three_prime_UTR |
| ACAAATGCATCCTCCGGCGC+CGG | 0.518692 | 3_3:-77886705 | Msa0474860:exon |
| ACTCAGAGGAGATATCGATC+TGG | 0.527358 | 3_3:-77884028 | Msa0474860:CDS |
| TTTGCTGGGTTTACATCATG+AGG | 0.527634 | 3_3:-77884058 | Msa0474860:CDS |
| AAGCGGATCACCAGTGATAG+TGG | 0.528062 | 3_3:-77883342 | Msa0474860:CDS |
| ATTTCCTTTCCAAGCGCGAT+AGG | 0.533436 | 3_3:+77886637 | None:intergenic |
| CATGATGTAAACCCAGCAAA+AGG | 0.534339 | 3_3:+77884061 | None:intergenic |
| CCACAAGGACTGCCTTAGAA+AGG | 0.535328 | 3_3:+77883434 | None:intergenic |
| TTATTAGTGCAATGGAAGCA+GGG | 0.535975 | 3_3:+77883988 | None:intergenic |
| GATTTGATCATCACTGCCCA+TGG | 0.538217 | 3_3:-77884797 | Msa0474860:CDS |
| TCATCAGAACCTATCGCGCT+TGG | 0.540838 | 3_3:-77886646 | Msa0474860:CDS |
| AAGTCAACCCTTATAACAAA+GGG | 0.541030 | 3_3:-77883719 | Msa0474860:CDS |
| ATTGTAAACTGGCATCATAA+GGG | 0.543614 | 3_3:+77883581 | None:intergenic |
| AAGCACAGAAAACAGCAACA+GGG | 0.545403 | 3_3:+77886446 | None:intergenic |
| TCAAACACAAATGCATCCTC+CGG | 0.547234 | 3_3:-77886711 | Msa0474860:exon |
| TTTCCGGCTACTGAGTTCGC+CGG | 0.553399 | 3_3:+77886686 | None:intergenic |
| AGAACCTATCGCGCTTGGAA+AGG | 0.560307 | 3_3:-77886641 | Msa0474860:CDS |
| GATCATCACTGCCCATGGGT+TGG | 0.560369 | 3_3:-77884792 | Msa0474860:CDS |
| ACTGAGTTCGCCGGCGCCGG+AGG | 0.561048 | 3_3:+77886695 | None:intergenic |
| ATTGCTCTTATACTGACCTC+AGG | 0.563603 | 3_3:-77885044 | Msa0474860:CDS |
| CCATCATAATTATCTGGGAG+TGG | 0.563784 | 3_3:+77884984 | None:intergenic |
| AGGTTCATTACCACTATCAC+TGG | 0.565407 | 3_3:+77883332 | None:intergenic |
| ACCACATTTACCACGATCCA+AGG | 0.572679 | 3_3:-77884928 | Msa0474860:CDS |
| TCGGATTTGATAGGGAAGTA+CGG | 0.574055 | 3_3:-77883209 | Msa0474860:three_prime_UTR |
| ATGCCGACGTCAAATGGTGC+CGG | 0.574249 | 3_3:+77882946 | None:intergenic |
| ACAATTACTTCCTTGGATCG+TGG | 0.582722 | 3_3:+77884918 | None:intergenic |
| TCTGCTGCTTTGTTCCCACA+AGG | 0.583203 | 3_3:+77883419 | None:intergenic |
| CCAATACACTGACCAACCCA+TGG | 0.583973 | 3_3:+77884780 | None:intergenic |
| GCGCCGGCGAACTCAGTAGC+CGG | 0.585327 | 3_3:-77886689 | Msa0474860:CDS |
| TGTGTATATTATTAGTGCAA+TGG | 0.589926 | 3_3:+77883980 | None:intergenic |
| TTACAATGAGGCTGATGAGG+TGG | 0.589928 | 3_3:-77883565 | Msa0474860:CDS |
| ACAGAATCATCTAGACAAAG+AGG | 0.591209 | 3_3:-77883612 | Msa0474860:CDS |
| CAAGTCAACCCTTATAACAA+AGG | 0.591481 | 3_3:-77883720 | Msa0474860:CDS |
| GATCGTGGTAAATGTGGTGG+TGG | 0.591714 | 3_3:+77884933 | None:intergenic |
| ATTTGATCATCACTGCCCAT+GGG | 0.600506 | 3_3:-77884796 | Msa0474860:CDS |
| TCTGATGAGCGAAGGATCAA+CGG | 0.601917 | 3_3:+77886661 | None:intergenic |
| AGTATGCTTCACACAGAAAG+GGG | 0.616574 | 3_3:-77883474 | Msa0474860:CDS |
| AAGTAAATGAACATAATGGA+AGG | 0.617930 | 3_3:+77883026 | None:intergenic |
| TATTAGTGCAATGGAAGCAG+GGG | 0.618463 | 3_3:+77883989 | None:intergenic |
| CGATAGGTTCTGATGAGCGA+AGG | 0.621597 | 3_3:+77886653 | None:intergenic |
| TCCTTGGATCGTGGTAAATG+TGG | 0.622600 | 3_3:+77884927 | None:intergenic |
| GGTTGGTCAGTGTATTGGAC+TGG | 0.624376 | 3_3:-77884775 | Msa0474860:intron |
| TGATTTAAGTGATACATCTG+TGG | 0.629494 | 3_3:-77883505 | Msa0474860:CDS |
| TCATAATTATCTGGGAGTGG+AGG | 0.634751 | 3_3:+77884987 | None:intergenic |
| AGTTTACAATGAGGCTGATG+AGG | 0.639849 | 3_3:-77883568 | Msa0474860:CDS |
| TATGATGCCAGTTTACAATG+AGG | 0.640744 | 3_3:-77883577 | Msa0474860:CDS |
| ATATCTAATCAGCACAAACC+AGG | 0.643061 | 3_3:-77883913 | Msa0474860:intron |
| AGCTTCTGATGTTCTTGACG+AGG | 0.657463 | 3_3:-77883385 | Msa0474860:CDS |
| ATGAACATAAAGGCAAAGCA+GGG | 0.663108 | 3_3:+77884085 | None:intergenic |
| TTGGATCGTGGTAAATGTGG+TGG | 0.667113 | 3_3:+77884930 | None:intergenic |
| CAATACACTGACCAACCCAT+GGG | 0.670201 | 3_3:+77884781 | None:intergenic |
| ATACTGAGCAATGAGAGCAG+CGG | 0.679203 | 3_3:+77884838 | None:intergenic |
| AGTGATAGTGGTAATGAACC+TGG | 0.679603 | 3_3:-77883330 | Msa0474860:CDS |
| TATGCCAGGATCTCTTCCTG+AGG | 0.701986 | 3_3:+77885028 | None:intergenic |
| AGTGGAGGATAAGAATTGCG+AGG | 0.702045 | 3_3:+77885002 | None:intergenic |
| CATGAGGATCAAGAACTCAG+AGG | 0.703307 | 3_3:-77884042 | Msa0474860:CDS |
| TTGCCGGCACCATTTGACGT+CGG | 0.703566 | 3_3:-77882949 | Msa0474860:three_prime_UTR |
| GAGCAATGAGAGCAGCGGGG+AGG | 0.704186 | 3_3:+77884843 | None:intergenic |
| CTCAGTATGTGATAACTGTG+TGG | 0.713980 | 3_3:-77884823 | Msa0474860:CDS |
| ACGAAGACGACGAATCAAAG+CGG | 0.721141 | 3_3:-77883359 | Msa0474860:CDS |
| ACTGAGCAATGAGAGCAGCG+GGG | 0.779041 | 3_3:+77884840 | None:intergenic |
| GATAGTGGTAATGAACCTGG+TGG | 0.817967 | 3_3:-77883327 | Msa0474860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATCCTTATATAATTA+AGG | + | chr3_3:77883055-77883074 | None:intergenic | 10.0% |
| !! | TTAAAATTACAAAGAAAAAT+AGG | - | chr3_3:77886399-77886418 | Msa0474860:CDS | 10.0% |
| !! | AGTTAAACCTTAATTATATA+AGG | - | chr3_3:77883045-77883064 | Msa0474860:three_prime_UTR | 15.0% |
| !!! | TTGTATAAAATTTTTGAAGT+AGG | + | chr3_3:77883584-77883603 | None:intergenic | 15.0% |
| !!! | CTTCAAAAATTTTATACAAT+CGG | - | chr3_3:77883585-77883604 | Msa0474860:CDS | 15.0% |
| !!! | TTTGTAATGAAATATTTTCT+TGG | - | chr3_3:77884345-77884364 | Msa0474860:intron | 15.0% |
| !! | ATATTATTCCATTTCTAATT+AGG | + | chr3_3:77885301-77885320 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTAGTTATTCTG+TGG | - | chr3_3:77886531-77886550 | Msa0474860:intron | 15.0% |
| !! | AAAAAAGTAAATGAACATAA+TGG | + | chr3_3:77886634-77886653 | None:intergenic | 15.0% |
| !! | TGAATAAAAATGACTTACAA+AGG | + | chr3_3:77883311-77883330 | None:intergenic | 20.0% |
| !! | AAACTTCTTCTATTCTAAAT+AGG | + | chr3_3:77883665-77883684 | None:intergenic | 20.0% |
| !!! | TGTATAGCTAGATATTATTT+TGG | - | chr3_3:77883718-77883737 | Msa0474860:CDS | 20.0% |
| !! | CTAGATATAAATAAGATTTC+TGG | - | chr3_3:77883756-77883775 | Msa0474860:CDS | 20.0% |
| !! | AAACTATAAGAGAAACTATT+TGG | - | chr3_3:77884062-77884081 | Msa0474860:CDS | 20.0% |
| !! | AGATTTAGATATTAATGAGT+TGG | - | chr3_3:77884087-77884106 | Msa0474860:CDS | 20.0% |
| !!! | TTTTTTTTACCTGATTACTA+TGG | + | chr3_3:77884264-77884283 | None:intergenic | 20.0% |
| !! | ATTAAAATGATAGCACAAAT+TGG | + | chr3_3:77884944-77884963 | None:intergenic | 20.0% |
| !!! | CATATGAAAATTTTAGATAC+CGG | - | chr3_3:77885901-77885920 | Msa0474860:intron | 20.0% |
| !!! | GAATTTTTCTGAAATTATAG+AGG | + | chr3_3:77886368-77886387 | None:intergenic | 20.0% |
| !! | AAATTACAAAGAAAAATAGG+TGG | - | chr3_3:77886402-77886421 | Msa0474860:CDS | 20.0% |
| !! | AATTACAAAGAAAAATAGGT+GGG | - | chr3_3:77886403-77886422 | Msa0474860:CDS | 20.0% |
| !!! | TGATATAGTTCTTTTAAAAG+TGG | - | chr3_3:77886554-77886573 | Msa0474860:intron | 20.0% |
| !! | ACAAAAACAAAAGAAATGAA+GGG | + | chr3_3:77886657-77886676 | None:intergenic | 20.0% |
| !!! | AATGCTACTTTTTCTTTTTC+AGG | - | chr3_3:77883108-77883127 | Msa0474860:three_prime_UTR | 25.0% |
| ! | GTAAATATAGATTTCACATC+AGG | + | chr3_3:77883166-77883185 | None:intergenic | 25.0% |
| ! | TTCATAACTTGAATCCATTA+GGG | - | chr3_3:77883479-77883498 | Msa0474860:CDS | 25.0% |
| ! | ATGAGTTAAGAATAACTAAC+AGG | + | chr3_3:77883541-77883560 | None:intergenic | 25.0% |
| ! | TAGTTATTCTTAACTCATCA+TGG | - | chr3_3:77883543-77883562 | Msa0474860:CDS | 25.0% |
| ! | AGTTATTCTTAACTCATCAT+GGG | - | chr3_3:77883544-77883563 | Msa0474860:CDS | 25.0% |
| ! | AATAGAAGAAGTTTAGCATT+TGG | - | chr3_3:77883671-77883690 | Msa0474860:CDS | 25.0% |
| ! | TTAGCATTTGGACAAATTTA+TGG | - | chr3_3:77883683-77883702 | Msa0474860:CDS | 25.0% |
| ! | TATATCTAGCTAAGTATACT+TGG | + | chr3_3:77883745-77883764 | None:intergenic | 25.0% |
| !! | CACTATCTTTTCTACTATAT+AGG | + | chr3_3:77883927-77883946 | None:intergenic | 25.0% |
| ! | CTATATAGTAGAAAAGATAG+TGG | - | chr3_3:77883925-77883944 | Msa0474860:CDS | 25.0% |
| !!! | TAGAAAAGATAGTGGAAAAT+AGG | - | chr3_3:77883933-77883952 | Msa0474860:CDS | 25.0% |
| !! | GTTTCTCTTATAGTTTTCAT+AGG | + | chr3_3:77884058-77884077 | None:intergenic | 25.0% |
| !! | TATTGTTGTTGTAAACTCTA+TGG | - | chr3_3:77884169-77884188 | Msa0474860:intron | 25.0% |
| !! | TGAAATATTTTCTTGGTGAA+TGG | - | chr3_3:77884352-77884371 | Msa0474860:intron | 25.0% |
| ! | ATTTACCTCCTAATTAGAAA+TGG | - | chr3_3:77885290-77885309 | Msa0474860:intron | 25.0% |
| ! | TTATTCCATTTCTAATTAGG+AGG | + | chr3_3:77885298-77885317 | None:intergenic | 25.0% |
| !! | TTGTTTCTTTGCATGTATAT+TGG | - | chr3_3:77885339-77885358 | Msa0474860:intron | 25.0% |
| ! | TGTGTATATTATTAGTGCAA+TGG | + | chr3_3:77885676-77885695 | None:intergenic | 25.0% |
| ! | ATAGTAAGTAGTCTCATTTA+AGG | + | chr3_3:77885797-77885816 | None:intergenic | 25.0% |
| ! | ACAAAAGGAACAATCATTAA+CGG | + | chr3_3:77885866-77885885 | None:intergenic | 25.0% |
| !!! | CTGAAATTGTTTTTGGATAT+GGG | + | chr3_3:77885999-77886018 | None:intergenic | 25.0% |
| ! | ATTACAAAGAAAAATAGGTG+GGG | - | chr3_3:77886404-77886423 | Msa0474860:CDS | 25.0% |
| !!! | TCATTGTTTTGGTCAAAAAA+TGG | - | chr3_3:77886475-77886494 | Msa0474860:CDS | 25.0% |
| ! | AAGATGATGAATAGAAATTG+TGG | - | chr3_3:77886596-77886615 | Msa0474860:intron | 25.0% |
| !! | AAGTAAATGAACATAATGGA+AGG | + | chr3_3:77886630-77886649 | None:intergenic | 25.0% |
| ! | GACAAAAACAAAAGAAATGA+AGG | + | chr3_3:77886658-77886677 | None:intergenic | 25.0% |
| !!! | CTTTTTCAGGTGTTTTTTCT+TGG | - | chr3_3:77883121-77883140 | Msa0474860:three_prime_UTR | 30.0% |
| ATTGAATATCCAGAGTGATT+AGG | + | chr3_3:77883262-77883281 | None:intergenic | 30.0% | |
| TATTATTGTTGTCGATGTGT+CGG | - | chr3_3:77883436-77883455 | Msa0474860:CDS | 30.0% | |
| CTTCATAACTTGAATCCATT+AGG | - | chr3_3:77883478-77883497 | Msa0474860:CDS | 30.0% | |
| ! | ATACAATCGGTTAGTTGAAA+AGG | - | chr3_3:77883598-77883617 | Msa0474860:CDS | 30.0% |
| TGATAACTGATAAGACTAGA+CGG | - | chr3_3:77883846-77883865 | Msa0474860:intron | 30.0% | |
| AGTTAGATTACAAGAGATAG+AGG | - | chr3_3:77884028-77884047 | Msa0474860:CDS | 30.0% | |
| ! | TAATGAGTTGGATCCAAATA+TGG | - | chr3_3:77884099-77884118 | Msa0474860:CDS | 30.0% |
| TACGCATCATAAACCATATT+TGG | + | chr3_3:77884115-77884134 | None:intergenic | 30.0% | |
| ! | TAGCTATATCCAACTTTTAG+AGG | - | chr3_3:77884411-77884430 | Msa0474860:intron | 30.0% |
| ! | AGCTATATCCAACTTTTAGA+GGG | - | chr3_3:77884412-77884431 | Msa0474860:intron | 30.0% |
| ! | CATAATTACCCTCTAAAAGT+TGG | + | chr3_3:77884423-77884442 | None:intergenic | 30.0% |
| ! | TAACGTGTTTAGGATTAAAG+TGG | + | chr3_3:77884570-77884589 | None:intergenic | 30.0% |
| CACTTCCATCATAATTATCT+GGG | + | chr3_3:77884677-77884696 | None:intergenic | 30.0% | |
| TCACTTCCATCATAATTATC+TGG | + | chr3_3:77884678-77884697 | None:intergenic | 30.0% | |
| ! | TCCTGAACAAACAATTTTAG+TGG | - | chr3_3:77885028-77885047 | Msa0474860:CDS | 30.0% |
| TCCACTAAAATTGTTTGTTC+AGG | + | chr3_3:77885032-77885051 | None:intergenic | 30.0% | |
| ! | AACATTGACTAAGTTGTCAA+AGG | - | chr3_3:77885051-77885070 | Msa0474860:CDS | 30.0% |
| ! | ACATTGACTAAGTTGTCAAA+GGG | - | chr3_3:77885052-77885071 | Msa0474860:CDS | 30.0% |
| ATTGACAGCTTAGTCAATAA+GGG | + | chr3_3:77885249-77885268 | None:intergenic | 30.0% | |
| AATTGACAGCTTAGTCAATA+AGG | + | chr3_3:77885250-77885269 | None:intergenic | 30.0% | |
| GTCAATTTACTGTGATCAAA+TGG | - | chr3_3:77885263-77885282 | Msa0474860:intron | 30.0% | |
| CTCTTTGCTTTATATGTACA+CGG | - | chr3_3:77885499-77885518 | Msa0474860:intron | 30.0% | |
| AAACAAACATGTAGTAGAAC+CGG | + | chr3_3:77885539-77885558 | None:intergenic | 30.0% | |
| !! | TTGTGCTGATTAGATATGTA+TGG | + | chr3_3:77885737-77885756 | None:intergenic | 30.0% |
| GTAAGAAAAACGAACTAGAA+AGG | + | chr3_3:77885841-77885860 | None:intergenic | 30.0% | |
| AAGTCAACCCTTATAACAAA+GGG | - | chr3_3:77885934-77885953 | Msa0474860:intron | 30.0% | |
| ! | CAATTAGCCCTTTGTTATAA+GGG | + | chr3_3:77885944-77885963 | None:intergenic | 30.0% |
| ! | TCAATTAGCCCTTTGTTATA+AGG | + | chr3_3:77885945-77885964 | None:intergenic | 30.0% |
| !!! | ATTGTTTTTGGATATGGGAA+TGG | + | chr3_3:77885994-77886013 | None:intergenic | 30.0% |
| !!! | CCTGAAATTGTTTTTGGATA+TGG | + | chr3_3:77886000-77886019 | None:intergenic | 30.0% |
| CCATATCCAAAAACAATTTC+AGG | - | chr3_3:77885997-77886016 | Msa0474860:intron | 30.0% | |
| ATTGTAAACTGGCATCATAA+GGG | + | chr3_3:77886075-77886094 | None:intergenic | 30.0% | |
| GGAAAAAGATTATAAAGACG+AGG | - | chr3_3:77886109-77886128 | Msa0474860:intron | 30.0% | |
| GATTATAAAGACGAGGAATA+TGG | - | chr3_3:77886116-77886135 | Msa0474860:intron | 30.0% | |
| TGATTTAAGTGATACATCTG+TGG | - | chr3_3:77886148-77886167 | Msa0474860:intron | 30.0% | |
| TTACAAAGAAAAATAGGTGG+GGG | - | chr3_3:77886405-77886424 | Msa0474860:CDS | 30.0% | |
| TTGTTATGTTCGGATTTGAT+AGG | - | chr3_3:77886435-77886454 | Msa0474860:CDS | 30.0% | |
| TGTTATGTTCGGATTTGATA+GGG | - | chr3_3:77886436-77886455 | Msa0474860:CDS | 30.0% | |
| ! | TTTTGGTCAAAAAATGGCAT+TGG | - | chr3_3:77886481-77886500 | Msa0474860:CDS | 30.0% |
| !!! | TTTCAGGTGTTTTTTCTTGG+AGG | - | chr3_3:77883124-77883143 | Msa0474860:three_prime_UTR | 35.0% |
| !!! | TTCAGGTGTTTTTTCTTGGA+GGG | - | chr3_3:77883125-77883144 | Msa0474860:three_prime_UTR | 35.0% |
| ! | GATGATTTTCCTAATCACTC+TGG | - | chr3_3:77883250-77883269 | Msa0474860:three_prime_UTR | 35.0% |
| ATAATTCAATGTGTCAGCGT+CGG | + | chr3_3:77883400-77883419 | None:intergenic | 35.0% | |
| ! | TGGATTCAAGTTATGAAGCA+CGG | + | chr3_3:77883476-77883495 | None:intergenic | 35.0% |
| ! | TACTTAAAGCACTACCCTAA+TGG | + | chr3_3:77883496-77883515 | None:intergenic | 35.0% |
| ! | ATTAGGGTAGTGCTTTAAGT+AGG | - | chr3_3:77883495-77883514 | Msa0474860:CDS | 35.0% |
| GTTAAGAATAACTAACAGGC+AGG | + | chr3_3:77883537-77883556 | None:intergenic | 35.0% | |
| ! | AGATTTCTGGATATTGCTTG+TGG | - | chr3_3:77883769-77883788 | Msa0474860:intron | 35.0% |
| GATAACTGATAAGACTAGAC+GGG | - | chr3_3:77883847-77883866 | Msa0474860:intron | 35.0% | |
| !! | AGATAGTGGAAAATAGGCTT+AGG | - | chr3_3:77883939-77883958 | Msa0474860:CDS | 35.0% |
| AAAATAGGCTTAGGTGGTTT+GGG | - | chr3_3:77883948-77883967 | Msa0474860:CDS | 35.0% | |
| AGTAAGAAGAGTAGATCAGA+TGG | - | chr3_3:77884000-77884019 | Msa0474860:CDS | 35.0% | |
| GGACTACTTGTGTTAAGAAA+TGG | - | chr3_3:77884190-77884209 | Msa0474860:intron | 35.0% | |
| TTGTGTTAAGAAATGGAGCT+AGG | - | chr3_3:77884197-77884216 | Msa0474860:intron | 35.0% | |
| TGTGTTAAGAAATGGAGCTA+GGG | - | chr3_3:77884198-77884217 | Msa0474860:intron | 35.0% | |
| AAAATGAAGCGAAATGTGTC+AGG | - | chr3_3:77884232-77884251 | Msa0474860:intron | 35.0% | |
| !! | AGGTTTTGACCATAGTAATC+AGG | - | chr3_3:77884252-77884271 | Msa0474860:intron | 35.0% |
| AGTTGAGATAACTTCTTGCA+TGG | + | chr3_3:77884312-77884331 | None:intergenic | 35.0% | |
| GCAATACATGTAACGTGTTT+AGG | + | chr3_3:77884580-77884599 | None:intergenic | 35.0% | |
| TCCAAGGAAGTAATTGTCAA+TGG | - | chr3_3:77884741-77884760 | Msa0474860:intron | 35.0% | |
| TCCATTGACAATTACTTCCT+TGG | + | chr3_3:77884745-77884764 | None:intergenic | 35.0% | |
| ! | CATTGACTAAGTTGTCAAAG+GGG | - | chr3_3:77885053-77885072 | Msa0474860:CDS | 35.0% |
| GTTGTTGTCATGTGATTGAA+AGG | - | chr3_3:77885096-77885115 | Msa0474860:intron | 35.0% | |
| !!! | CTTACCCTGTTTTTTTACAC+AGG | + | chr3_3:77885150-77885169 | None:intergenic | 35.0% |
| CGTGTACATATAAAGCAAAG+AGG | + | chr3_3:77885501-77885520 | None:intergenic | 35.0% | |
| ATGAACATAAAGGCAAAGCA+GGG | + | chr3_3:77885571-77885590 | None:intergenic | 35.0% | |
| ! | AGCAAAAGGCATGAACATAA+AGG | + | chr3_3:77885581-77885600 | None:intergenic | 35.0% |
| ! | TTTATGTTCATGCCTTTTGC+TGG | - | chr3_3:77885580-77885599 | Msa0474860:intron | 35.0% |
| ! | TTATGTTCATGCCTTTTGCT+GGG | - | chr3_3:77885581-77885600 | Msa0474860:intron | 35.0% |
| TTATTAGTGCAATGGAAGCA+GGG | + | chr3_3:77885668-77885687 | None:intergenic | 35.0% | |
| ATTATTAGTGCAATGGAAGC+AGG | + | chr3_3:77885669-77885688 | None:intergenic | 35.0% | |
| TATACACATTCATTGCTGTC+TGG | - | chr3_3:77885688-77885707 | Msa0474860:intron | 35.0% | |
| ATATCTAATCAGCACAAACC+AGG | - | chr3_3:77885740-77885759 | Msa0474860:intron | 35.0% | |
| AGTTAAGTAGTGTTCAAACC+TGG | + | chr3_3:77885761-77885780 | None:intergenic | 35.0% | |
| ! | GTAGTCTCATTTAAGGTCAA+GGG | + | chr3_3:77885790-77885809 | None:intergenic | 35.0% |
| ! | AGTAGTCTCATTTAAGGTCA+AGG | + | chr3_3:77885791-77885810 | None:intergenic | 35.0% |
| TAGACTGCACATAGAACAAA+AGG | + | chr3_3:77885881-77885900 | None:intergenic | 35.0% | |
| !! | TGTTATAAGGGTTGACTTGT+CGG | + | chr3_3:77885932-77885951 | None:intergenic | 35.0% |
| CAAGTCAACCCTTATAACAA+AGG | - | chr3_3:77885933-77885952 | Msa0474860:intron | 35.0% | |
| ! | CTTGGACCTGAAATTGTTTT+TGG | + | chr3_3:77886006-77886025 | None:intergenic | 35.0% |
| ! | CAAAAACAATTTCAGGTCCA+AGG | - | chr3_3:77886004-77886023 | Msa0474860:intron | 35.0% |
| !!! | GATGATTCTGTTGGTTCTTT+TGG | + | chr3_3:77886032-77886051 | None:intergenic | 35.0% |
| CTTTGTCTAGATGATTCTGT+TGG | + | chr3_3:77886041-77886060 | None:intergenic | 35.0% | |
| ACAGAATCATCTAGACAAAG+AGG | - | chr3_3:77886041-77886060 | Msa0474860:intron | 35.0% | |
| CATTGTAAACTGGCATCATA+AGG | + | chr3_3:77886076-77886095 | None:intergenic | 35.0% | |
| TATGATGCCAGTTTACAATG+AGG | - | chr3_3:77886076-77886095 | Msa0474860:intron | 35.0% | |
| AGTGATACATCTGTGGATTT+AGG | - | chr3_3:77886155-77886174 | Msa0474860:intron | 35.0% | |
| TACAAAGAAAAATAGGTGGG+GGG | - | chr3_3:77886406-77886425 | Msa0474860:CDS | 35.0% | |
| ATTCTCAGAGCAACAGTATA+AGG | + | chr3_3:77886680-77886699 | None:intergenic | 35.0% | |
| !! | TGCTCTGAGAATATAATTGC+CGG | - | chr3_3:77886688-77886707 | Msa0474860:CDS | 35.0% |
| TCAAACACAAATGCATCCTC+CGG | - | chr3_3:77882942-77882961 | Msa0474860:three_prime_UTR | 40.0% | |
| CTTGGAGGGAGGTTTATATT+TGG | - | chr3_3:77883139-77883158 | Msa0474860:three_prime_UTR | 40.0% | |
| AAGCACAGAAAACAGCAACA+GGG | + | chr3_3:77883210-77883229 | None:intergenic | 40.0% | |
| AAAGCACAGAAAACAGCAAC+AGG | + | chr3_3:77883211-77883230 | None:intergenic | 40.0% | |
| ATAACTAACAGGCAGGTCAT+AGG | + | chr3_3:77883530-77883549 | None:intergenic | 40.0% | |
| ! | GGTTAGTTGAAAAGGACTTG+AGG | - | chr3_3:77883606-77883625 | Msa0474860:CDS | 40.0% |
| TAGTGGAAAATAGGCTTAGG+TGG | - | chr3_3:77883942-77883961 | Msa0474860:CDS | 40.0% | |
| GAAAATAGGCTTAGGTGGTT+TGG | - | chr3_3:77883947-77883966 | Msa0474860:CDS | 40.0% | |
| AAGAAGAGTAGATCAGATGG+AGG | - | chr3_3:77884003-77884022 | Msa0474860:CDS | 40.0% | |
| CGTAATTTGATCCATGTAGC+CGG | - | chr3_3:77884131-77884150 | Msa0474860:intron | 40.0% | |
| ACAACAATATCCCACCAAGT+GGG | + | chr3_3:77884158-77884177 | None:intergenic | 40.0% | |
| AACAACAATATCCCACCAAG+TGG | + | chr3_3:77884159-77884178 | None:intergenic | 40.0% | |
| AACACGTTACATGTATTGCC+AGG | - | chr3_3:77884581-77884600 | Msa0474860:intron | 40.0% | |
| GTATAAGAGCAATCAGAACC+TGG | + | chr3_3:77884602-77884621 | None:intergenic | 40.0% | |
| ATTGCTCTTATACTGACCTC+AGG | - | chr3_3:77884609-77884628 | Msa0474860:intron | 40.0% | |
| TCATAATTATCTGGGAGTGG+AGG | + | chr3_3:77884669-77884688 | None:intergenic | 40.0% | |
| CCATCATAATTATCTGGGAG+TGG | + | chr3_3:77884672-77884691 | None:intergenic | 40.0% | |
| CCACTCCCAGATAATTATGA+TGG | - | chr3_3:77884669-77884688 | Msa0474860:intron | 40.0% | |
| ACAATTACTTCCTTGGATCG+TGG | + | chr3_3:77884738-77884757 | None:intergenic | 40.0% | |
| CTCAGTATGTGATAACTGTG+TGG | - | chr3_3:77884830-77884849 | Msa0474860:CDS | 40.0% | |
| ATTTGATCATCACTGCCCAT+GGG | - | chr3_3:77884857-77884876 | Msa0474860:CDS | 40.0% | |
| AGCCTCCTGTGTAAAAAAAC+AGG | - | chr3_3:77885142-77885161 | Msa0474860:intron | 40.0% | |
| GCCTCCTGTGTAAAAAAACA+GGG | - | chr3_3:77885143-77885162 | Msa0474860:intron | 40.0% | |
| !!! | ACCCTGTTTTTTTACACAGG+AGG | + | chr3_3:77885147-77885166 | None:intergenic | 40.0% |
| CTGCGTACAATACACCAAAA+TGG | - | chr3_3:77885171-77885190 | Msa0474860:intron | 40.0% | |
| TTCCCAAACATCACACTCAT+TGG | - | chr3_3:77885376-77885395 | Msa0474860:intron | 40.0% | |
| GACCAATGAGTGTGATGTTT+GGG | + | chr3_3:77885381-77885400 | None:intergenic | 40.0% | |
| TGACCAATGAGTGTGATGTT+TGG | + | chr3_3:77885382-77885401 | None:intergenic | 40.0% | |
| CATGAACATAAAGGCAAAGC+AGG | + | chr3_3:77885572-77885591 | None:intergenic | 40.0% | |
| CATGATGTAAACCCAGCAAA+AGG | + | chr3_3:77885595-77885614 | None:intergenic | 40.0% | |
| TTTGCTGGGTTTACATCATG+AGG | - | chr3_3:77885595-77885614 | Msa0474860:intron | 40.0% | |
| TATTAGTGCAATGGAAGCAG+GGG | + | chr3_3:77885667-77885686 | None:intergenic | 40.0% | |
| ! | TTCATTGCTGTCTGGTTTGT+TGG | - | chr3_3:77885696-77885715 | Msa0474860:intron | 40.0% |
| !!! | TGTTGGTTCTTTTGGAACCT+TGG | + | chr3_3:77886024-77886043 | None:intergenic | 40.0% |
| TCATCAGCCTCATTGTAAAC+TGG | + | chr3_3:77886086-77886105 | None:intergenic | 40.0% | |
| AGTTTACAATGAGGCTGATG+AGG | - | chr3_3:77886085-77886104 | Msa0474860:intron | 40.0% | |
| CAGTATGCTTCACACAGAAA+GGG | - | chr3_3:77886178-77886197 | Msa0474860:intron | 40.0% | |
| AGTATGCTTCACACAGAAAG+GGG | - | chr3_3:77886179-77886198 | Msa0474860:intron | 40.0% | |
| GACAAGTTGCTTCCTTTCTA+AGG | - | chr3_3:77886207-77886226 | Msa0474860:intron | 40.0% | |
| GGAACAAAGCAGCAGAAAAT+GGG | - | chr3_3:77886241-77886260 | Msa0474860:intron | 40.0% | |
| AGGTTCATTACCACTATCAC+TGG | + | chr3_3:77886324-77886343 | None:intergenic | 40.0% | |
| !! | AGTGATAGTGGTAATGAACC+TGG | - | chr3_3:77886323-77886342 | Msa0474860:intron | 40.0% |
| TCGGATTTGATAGGGAAGTA+CGG | - | chr3_3:77886444-77886463 | Msa0474860:CDS | 40.0% | |
| ! | CGGCTTGTGTTTCATTGTTT+TGG | - | chr3_3:77886464-77886483 | Msa0474860:CDS | 40.0% |
| CGAAGGATCAACGGTATTTC+CGG | + | chr3_3:77882986-77883005 | None:intergenic | 45.0% | |
| TCTGATGAGCGAAGGATCAA+CGG | + | chr3_3:77882995-77883014 | None:intergenic | 45.0% | |
| ATTTCCTTTCCAAGCGCGAT+AGG | + | chr3_3:77883019-77883038 | None:intergenic | 45.0% | |
| !!! | AGGTGTTTTTTCTTGGAGGG+AGG | - | chr3_3:77883128-77883147 | Msa0474860:three_prime_UTR | 45.0% |
| AGCACAGAAAACAGCAACAG+GGG | + | chr3_3:77883209-77883228 | None:intergenic | 45.0% | |
| CAACAATATCCCACCAAGTG+GGG | + | chr3_3:77884157-77884176 | None:intergenic | 45.0% | |
| GTTAAGAAATGGAGCTAGGG+AGG | - | chr3_3:77884201-77884220 | Msa0474860:intron | 45.0% | |
| AGTGGAGGATAAGAATTGCG+AGG | + | chr3_3:77884654-77884673 | None:intergenic | 45.0% | |
| TTGGATCGTGGTAAATGTGG+TGG | + | chr3_3:77884726-77884745 | None:intergenic | 45.0% | |
| ACCACATTTACCACGATCCA+AGG | - | chr3_3:77884725-77884744 | Msa0474860:intron | 45.0% | |
| TCCTTGGATCGTGGTAAATG+TGG | + | chr3_3:77884729-77884748 | None:intergenic | 45.0% | |
| ATACTGAGCAATGAGAGCAG+CGG | + | chr3_3:77884818-77884837 | None:intergenic | 45.0% | |
| GATTTGATCATCACTGCCCA+TGG | - | chr3_3:77884856-77884875 | Msa0474860:CDS | 45.0% | |
| CAATACACTGACCAACCCAT+GGG | + | chr3_3:77884875-77884894 | None:intergenic | 45.0% | |
| AAGTTGTCAAAGGGGAGTCT+TGG | - | chr3_3:77885061-77885080 | Msa0474860:intron | 45.0% | |
| AAGGTCACAGATTCTAGTCC+TGG | - | chr3_3:77885115-77885134 | Msa0474860:intron | 45.0% | |
| AAAATGGTTGAACCTCGTCC+CGG | - | chr3_3:77885187-77885206 | Msa0474860:intron | 45.0% | |
| CTTAGTCAATAAGGGAAGCC+CGG | + | chr3_3:77885241-77885260 | None:intergenic | 45.0% | |
| CATGAGGATCAAGAACTCAG+AGG | - | chr3_3:77885611-77885630 | Msa0474860:intron | 45.0% | |
| ACTCAGAGGAGATATCGATC+TGG | - | chr3_3:77885625-77885644 | Msa0474860:intron | 45.0% | |
| !! | ATTGCTGTCTGGTTTGTTGG+AGG | - | chr3_3:77885699-77885718 | Msa0474860:intron | 45.0% |
| TTACAATGAGGCTGATGAGG+TGG | - | chr3_3:77886088-77886107 | Msa0474860:intron | 45.0% | |
| GCAGTATGCTTCACACAGAA+AGG | - | chr3_3:77886177-77886196 | Msa0474860:intron | 45.0% | |
| !! | CTTTCTAAGGCAGTCCTTGT+GGG | - | chr3_3:77886220-77886239 | Msa0474860:intron | 45.0% |
| GGGAACAAAGCAGCAGAAAA+TGG | - | chr3_3:77886240-77886259 | Msa0474860:intron | 45.0% | |
| AGCTTCTGATGTTCTTGACG+AGG | - | chr3_3:77886268-77886287 | Msa0474860:intron | 45.0% | |
| ACGAAGACGACGAATCAAAG+CGG | - | chr3_3:77886294-77886313 | Msa0474860:intron | 45.0% | |
| ! | GATAGTGGTAATGAACCTGG+TGG | - | chr3_3:77886326-77886345 | Msa0474860:intron | 45.0% |
| !! | GTTTTTGTTGAGTTGCCACC+AGG | + | chr3_3:77886344-77886363 | None:intergenic | 45.0% |
| !! | GGGGCAGAGTTTGTTATGTT+CGG | - | chr3_3:77886425-77886444 | Msa0474860:CDS | 45.0% |
| !! | AATATAATAAAAAATAGTAA+TGG | - | chr3_3:77885316-77885335 | Msa0474860:intron | 5.0% |
| ! | CGATAGGTTCTGATGAGCGA+AGG | + | chr3_3:77883003-77883022 | None:intergenic | 50.0% |
| TCATCAGAACCTATCGCGCT+TGG | - | chr3_3:77883007-77883026 | Msa0474860:three_prime_UTR | 50.0% | |
| AGAACCTATCGCGCTTGGAA+AGG | - | chr3_3:77883012-77883031 | Msa0474860:three_prime_UTR | 50.0% | |
| GAGAGAGAGAGAGAGAGAGT+TGG | - | chr3_3:77883894-77883913 | Msa0474860:intron | 50.0% | |
| TATGCCAGGATCTCTTCCTG+AGG | + | chr3_3:77884628-77884647 | None:intergenic | 50.0% | |
| GATCGTGGTAAATGTGGTGG+TGG | + | chr3_3:77884723-77884742 | None:intergenic | 50.0% | |
| TACTGAGCAATGAGAGCAGC+GGG | + | chr3_3:77884817-77884836 | None:intergenic | 50.0% | |
| CCAATACACTGACCAACCCA+TGG | + | chr3_3:77884876-77884895 | None:intergenic | 50.0% | |
| !! | CCATGGGTTGGTCAGTGTAT+TGG | - | chr3_3:77884873-77884892 | Msa0474860:CDS | 50.0% |
| ! | GGTTGGTCAGTGTATTGGAC+TGG | - | chr3_3:77884878-77884897 | Msa0474860:CDS | 50.0% |
| ! | TTACACAGGAGGCTGTTTCC+AGG | + | chr3_3:77885136-77885155 | None:intergenic | 50.0% |
| ! | GGGACGAGGTTCAACCATTT+TGG | + | chr3_3:77885188-77885207 | None:intergenic | 50.0% |
| CTAAAGCTCCTGCATACGCA+GGG | + | chr3_3:77885214-77885233 | None:intergenic | 50.0% | |
| ACTAAAGCTCCTGCATACGC+AGG | + | chr3_3:77885215-77885234 | None:intergenic | 50.0% | |
| ! | ATGCAGGAGCTTTAGTGCAC+CGG | - | chr3_3:77885219-77885238 | Msa0474860:intron | 50.0% |
| !! | GGTTGACTTGTCGGTCATAC+CGG | + | chr3_3:77885923-77885942 | None:intergenic | 50.0% |
| CCACAAGGACTGCCTTAGAA+AGG | + | chr3_3:77886222-77886241 | None:intergenic | 50.0% | |
| !! | CCTTTCTAAGGCAGTCCTTG+TGG | - | chr3_3:77886219-77886238 | Msa0474860:intron | 50.0% |
| !! | TCTGCTGCTTTGTTCCCACA+AGG | + | chr3_3:77886237-77886256 | None:intergenic | 50.0% |
| AAGCGGATCACCAGTGATAG+TGG | - | chr3_3:77886311-77886330 | Msa0474860:intron | 50.0% | |
| TTTCCGGCTACTGAGTTCGC+CGG | + | chr3_3:77882970-77882989 | None:intergenic | 55.0% | |
| AATATCCCACCAAGTGGGGC+CGG | + | chr3_3:77884153-77884172 | None:intergenic | 55.0% | |
| CTGACCTCAGGAAGAGATCC+TGG | - | chr3_3:77884621-77884640 | Msa0474860:intron | 55.0% | |
| ! | GAATTGCGAGGCACTATGCC+AGG | + | chr3_3:77884642-77884661 | None:intergenic | 55.0% |
| ACTGAGCAATGAGAGCAGCG+GGG | + | chr3_3:77884816-77884835 | None:intergenic | 55.0% | |
| GATCATCACTGCCCATGGGT+TGG | - | chr3_3:77884861-77884880 | Msa0474860:CDS | 55.0% | |
| ! | TGCAGGAGCTTTAGTGCACC+GGG | - | chr3_3:77885220-77885239 | Msa0474860:intron | 55.0% |
| TTGCCGGCACCATTTGACGT+CGG | - | chr3_3:77886704-77886723 | Msa0474860:CDS | 55.0% | |
| ATGCCGACGTCAAATGGTGC+CGG | + | chr3_3:77886710-77886729 | None:intergenic | 55.0% | |
| ACAAATGCATCCTCCGGCGC+CGG | - | chr3_3:77882948-77882967 | Msa0474860:three_prime_UTR | 60.0% | |
| CACGGCGACAGCGCAATTAC+CGG | - | chr3_3:77885517-77885536 | Msa0474860:intron | 60.0% | |
| TCCATGTAGCCGGCCCCACT+TGG | - | chr3_3:77884141-77884160 | Msa0474860:intron | 65.0% | |
| ACCAAGTGGGGCCGGCTACA+TGG | + | chr3_3:77884145-77884164 | None:intergenic | 65.0% | |
| ATGTAGCCGGCCCCACTTGG+TGG | - | chr3_3:77884144-77884163 | Msa0474860:intron | 65.0% | |
| TGTAGCCGGCCCCACTTGGT+GGG | - | chr3_3:77884145-77884164 | Msa0474860:intron | 65.0% | |
| GAGCAATGAGAGCAGCGGGG+AGG | + | chr3_3:77884813-77884832 | None:intergenic | 65.0% | |
| CTCCTGCATACGCAGGGTCC+GGG | + | chr3_3:77885208-77885227 | None:intergenic | 65.0% | |
| GCTCCTGCATACGCAGGGTC+CGG | + | chr3_3:77885209-77885228 | None:intergenic | 65.0% | |
| GCTACTGAGTTCGCCGGCGC+CGG | + | chr3_3:77882964-77882983 | None:intergenic | 70.0% | |
| ! | GCGCCGGCGAACTCAGTAGC+CGG | - | chr3_3:77882964-77882983 | Msa0474860:three_prime_UTR | 70.0% |
| CATACGCAGGGTCCGGGACG+AGG | + | chr3_3:77885202-77885221 | None:intergenic | 70.0% | |
| GTCCCGGACCCTGCGTATGC+AGG | - | chr3_3:77885203-77885222 | Msa0474860:intron | 70.0% | |
| ! | ACTGAGTTCGCCGGCGCCGG+AGG | + | chr3_3:77882961-77882980 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 77882941 | 77886734 | 77882941 | ID=Msa0474860;Name=Msa0474860 |
| chr3_3 | mRNA | 77882941 | 77886734 | 77882941 | ID=Msa0474860-mRNA-1;Parent=Msa0474860;Name=Msa0474860-mRNA-1;_AED=0.05;_eAED=0.05;_QI=11|1|1|1|1|1|5|361|426 |
| chr3_3 | exon | 77882941 | 77883778 | 77882941 | ID=Msa0474860-mRNA-1:exon:20897;Parent=Msa0474860-mRNA-1 |
| chr3_3 | exon | 77883914 | 77884147 | 77883914 | ID=Msa0474860-mRNA-1:exon:20896;Parent=Msa0474860-mRNA-1 |
| chr3_3 | exon | 77884776 | 77885072 | 77884776 | ID=Msa0474860-mRNA-1:exon:20895;Parent=Msa0474860-mRNA-1 |
| chr3_3 | exon | 77886363 | 77886545 | 77886363 | ID=Msa0474860-mRNA-1:exon:20894;Parent=Msa0474860-mRNA-1 |
| chr3_3 | exon | 77886634 | 77886734 | 77886634 | ID=Msa0474860-mRNA-1:exon:20893;Parent=Msa0474860-mRNA-1 |
| chr3_3 | five_prime_UTR | 77886724 | 77886734 | 77886724 | ID=Msa0474860-mRNA-1:five_prime_utr;Parent=Msa0474860-mRNA-1 |
| chr3_3 | CDS | 77886634 | 77886723 | 77886634 | ID=Msa0474860-mRNA-1:cds;Parent=Msa0474860-mRNA-1 |
| chr3_3 | CDS | 77886363 | 77886545 | 77886363 | ID=Msa0474860-mRNA-1:cds;Parent=Msa0474860-mRNA-1 |
| chr3_3 | CDS | 77884776 | 77885072 | 77884776 | ID=Msa0474860-mRNA-1:cds;Parent=Msa0474860-mRNA-1 |
| chr3_3 | CDS | 77883914 | 77884147 | 77883914 | ID=Msa0474860-mRNA-1:cds;Parent=Msa0474860-mRNA-1 |
| chr3_3 | CDS | 77883302 | 77883778 | 77883302 | ID=Msa0474860-mRNA-1:cds;Parent=Msa0474860-mRNA-1 |
| chr3_3 | three_prime_UTR | 77882941 | 77883301 | 77882941 | ID=Msa0474860-mRNA-1:three_prime_utr;Parent=Msa0474860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
