Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378910 | XP_003602771.2 | 96.714 | 426 | 14 | 0 | 1 | 426 | 1 | 426 | 0.0 | 864 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378910 | sp|Q9M306|ZDH10_ARATH | 54.206 | 428 | 173 | 6 | 19 | 423 | 26 | 453 | 5.40e-162 | 468 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378910 | G7J3C1 | 96.714 | 426 | 14 | 0 | 1 | 426 | 1 | 426 | 0.0 | 864 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0140530 | Msa0378910 | 0.804763 | 1.848117e-49 | -8.615850e-47 |
| Msa0377050 | Msa0378910 | 0.985934 | 3.884967e-165 | -8.615850e-47 |
| Msa0378910 | Msa0428510 | 0.937144 | 5.577418e-98 | -8.615850e-47 |
| Msa0378910 | Msa0474860 | 0.997506 | 9.156674e-244 | -8.615850e-47 |
| Msa0378910 | Msa0734950 | 0.804370 | 2.232013e-49 | -8.615850e-47 |
| Msa0378910 | Msa1395390 | 0.816608 | 5.065954e-52 | -8.615850e-47 |
| Msa0378910 | Msa1411670 | 0.800749 | 1.245494e-48 | -8.615850e-47 |
| Msa0352120 | Msa0378910 | -0.807167 | 5.768997e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378910 | MtrunA17_Chr3g0131931 | 96.714 | 426 | 14 | 0 | 1 | 426 | 1 | 426 | 0.0 | 864 |
| Msa0378910 | MtrunA17_Chr6g0462021 | 54.567 | 427 | 175 | 4 | 4 | 413 | 5 | 429 | 1.82e-166 | 474 |
| Msa0378910 | MtrunA17_Chr7g0251761 | 53.687 | 434 | 179 | 5 | 4 | 424 | 5 | 429 | 8.16e-152 | 437 |
| Msa0378910 | MtrunA17_Chr1g0201631 | 48.139 | 403 | 179 | 6 | 21 | 397 | 5 | 403 | 1.72e-133 | 390 |
| Msa0378910 | MtrunA17_Chr6g0464751 | 49.383 | 405 | 173 | 8 | 21 | 397 | 5 | 405 | 6.27e-130 | 381 |
| Msa0378910 | MtrunA17_Chr7g0255151 | 51.438 | 313 | 138 | 4 | 11 | 315 | 15 | 321 | 1.21e-107 | 325 |
| Msa0378910 | MtrunA17_Chr7g0255161 | 53.968 | 252 | 97 | 4 | 79 | 315 | 12 | 259 | 9.45e-90 | 276 |
| Msa0378910 | MtrunA17_Chr5g0406311 | 36.264 | 182 | 97 | 6 | 147 | 321 | 164 | 333 | 1.61e-21 | 95.1 |
| Msa0378910 | MtrunA17_Chr4g0064931 | 28.968 | 252 | 150 | 7 | 86 | 325 | 322 | 556 | 5.44e-21 | 95.5 |
| Msa0378910 | MtrunA17_Chr7g0273371 | 28.718 | 195 | 112 | 3 | 151 | 318 | 160 | 354 | 8.53e-20 | 90.9 |
| Msa0378910 | MtrunA17_Chr4g0011001 | 29.963 | 267 | 142 | 10 | 51 | 297 | 27 | 268 | 9.15e-20 | 89.4 |
| Msa0378910 | MtrunA17_Chr1g0211241 | 30.568 | 229 | 122 | 7 | 87 | 307 | 416 | 615 | 1.43e-19 | 91.3 |
| Msa0378910 | MtrunA17_Chr1g0199411 | 28.440 | 218 | 115 | 6 | 87 | 292 | 53 | 241 | 1.61e-18 | 85.1 |
| Msa0378910 | MtrunA17_Chr4g0009911 | 27.650 | 217 | 110 | 6 | 103 | 301 | 76 | 263 | 2.65e-17 | 82.0 |
| Msa0378910 | MtrunA17_Chr4g0049351 | 32.903 | 155 | 89 | 5 | 151 | 292 | 362 | 514 | 4.79e-17 | 83.2 |
| Msa0378910 | MtrunA17_Chr1g0211231 | 29.487 | 234 | 110 | 9 | 86 | 307 | 340 | 530 | 1.31e-16 | 82.0 |
| Msa0378910 | MtrunA17_Chr7g0276121 | 29.245 | 212 | 110 | 10 | 103 | 297 | 83 | 271 | 2.55e-14 | 73.6 |
| Msa0378910 | MtrunA17_Chr4g0042821 | 32.824 | 131 | 78 | 3 | 152 | 272 | 180 | 310 | 1.01e-12 | 70.1 |
| Msa0378910 | MtrunA17_Chr3g0144181 | 28.788 | 132 | 82 | 3 | 152 | 272 | 149 | 279 | 6.04e-11 | 64.3 |
| Msa0378910 | MtrunA17_Chr1g0193941 | 26.866 | 134 | 86 | 4 | 150 | 272 | 155 | 287 | 6.96e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378910 | AT3G48760.1 | 54.206 | 428 | 173 | 6 | 19 | 423 | 26 | 453 | 5.49e-163 | 468 |
| Msa0378910 | AT3G26935.1 | 53.623 | 414 | 168 | 5 | 4 | 397 | 5 | 414 | 9.11e-159 | 455 |
| Msa0378910 | AT5G41060.1 | 55.639 | 399 | 153 | 6 | 6 | 386 | 7 | 399 | 2.08e-154 | 443 |
| Msa0378910 | AT5G41060.2 | 56.684 | 374 | 141 | 5 | 31 | 386 | 14 | 384 | 3.02e-148 | 427 |
| Msa0378910 | AT4G24630.1 | 48.477 | 394 | 186 | 7 | 21 | 399 | 4 | 395 | 2.11e-131 | 384 |
| Msa0378910 | AT5G41060.3 | 56.418 | 335 | 125 | 5 | 70 | 386 | 1 | 332 | 1.93e-129 | 377 |
| Msa0378910 | AT5G41060.4 | 56.418 | 335 | 125 | 5 | 70 | 386 | 1 | 332 | 1.93e-129 | 377 |
| Msa0378910 | AT5G50020.3 | 56.711 | 298 | 127 | 2 | 21 | 316 | 4 | 301 | 3.18e-126 | 372 |
| Msa0378910 | AT5G50020.2 | 56.711 | 298 | 127 | 2 | 21 | 316 | 34 | 331 | 8.07e-126 | 372 |
| Msa0378910 | AT5G50020.1 | 54.698 | 298 | 126 | 3 | 21 | 316 | 4 | 294 | 3.19e-118 | 351 |
| Msa0378910 | AT3G56930.1 | 52.288 | 306 | 140 | 2 | 16 | 315 | 5 | 310 | 2.51e-111 | 336 |
| Msa0378910 | AT5G05070.1 | 52.805 | 303 | 129 | 5 | 20 | 315 | 36 | 331 | 1.98e-108 | 326 |
| Msa0378910 | AT2G40990.1 | 39.474 | 418 | 218 | 9 | 5 | 411 | 12 | 405 | 7.02e-96 | 294 |
| Msa0378910 | AT3G56920.1 | 43.824 | 340 | 172 | 4 | 21 | 357 | 10 | 333 | 1.45e-92 | 283 |
| Msa0378910 | AT3G56930.2 | 47.195 | 303 | 118 | 3 | 19 | 315 | 8 | 274 | 1.33e-89 | 279 |
| Msa0378910 | AT3G51390.2 | 31.048 | 248 | 123 | 6 | 86 | 300 | 73 | 305 | 1.65e-20 | 92.4 |
| Msa0378910 | AT3G51390.1 | 33.684 | 190 | 111 | 4 | 118 | 300 | 129 | 310 | 7.58e-20 | 90.5 |
| Msa0378910 | AT3G60800.1 | 28.358 | 268 | 147 | 8 | 51 | 297 | 27 | 270 | 7.99e-19 | 87.0 |
| Msa0378910 | AT3G04970.3 | 31.973 | 147 | 80 | 2 | 151 | 277 | 73 | 219 | 2.61e-18 | 85.5 |
| Msa0378910 | AT2G14255.1 | 31.818 | 154 | 92 | 4 | 151 | 292 | 363 | 515 | 6.51e-18 | 86.3 |
| Msa0378910 | AT4G22750.1 | 28.346 | 254 | 133 | 10 | 83 | 313 | 54 | 281 | 1.09e-17 | 83.6 |
| Msa0378910 | AT4G00840.1 | 30.634 | 284 | 141 | 14 | 37 | 297 | 5 | 255 | 1.09e-17 | 83.6 |
| Msa0378910 | AT5G04270.1 | 29.651 | 172 | 95 | 3 | 103 | 274 | 66 | 211 | 1.64e-17 | 82.8 |
| Msa0378910 | AT3G04970.1 | 31.973 | 147 | 80 | 2 | 151 | 277 | 160 | 306 | 2.16e-17 | 84.0 |
| Msa0378910 | AT3G09320.1 | 30.275 | 218 | 105 | 7 | 102 | 301 | 66 | 254 | 1.88e-16 | 79.7 |
| Msa0378910 | AT5G20350.1 | 25.581 | 258 | 164 | 8 | 84 | 330 | 315 | 555 | 9.75e-16 | 79.7 |
| Msa0378910 | AT4G00840.2 | 33.735 | 166 | 86 | 7 | 37 | 194 | 5 | 154 | 2.75e-15 | 75.1 |
| Msa0378910 | AT3G04970.2 | 31.690 | 142 | 77 | 2 | 151 | 272 | 160 | 301 | 5.73e-15 | 75.9 |
| Msa0378910 | AT1G69420.1 | 31.298 | 131 | 80 | 2 | 152 | 272 | 164 | 294 | 6.97e-14 | 73.9 |
| Msa0378910 | AT1G69420.2 | 31.298 | 131 | 80 | 2 | 152 | 272 | 164 | 294 | 6.97e-14 | 73.9 |
| Msa0378910 | AT4G01730.1 | 27.820 | 133 | 86 | 2 | 150 | 272 | 157 | 289 | 6.82e-12 | 67.8 |
| Msa0378910 | AT3G22180.1 | 31.061 | 132 | 79 | 5 | 152 | 272 | 173 | 303 | 9.70e-12 | 67.4 |
Find 111 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGATTCTGTTGGTTCTTT+TGG | 0.104120 | 3_1:+79761728 | None:intergenic |
| TCACTTCCATCATAATTATC+TGG | 0.213227 | 3_1:+79763082 | None:intergenic |
| TCAATTAGCCCTTTGTTATA+AGG | 0.231915 | 3_1:+79761815 | None:intergenic |
| CTTGGAGGGAGGTTTATATT+TGG | 0.257102 | 3_1:-79764606 | Msa0378910:CDS |
| CGGCTTGTGTTTCATTGTTT+TGG | 0.260003 | 3_1:-79761293 | Msa0378910:three_prime_UTR |
| GGGAACAAAGCAGCAGAAAA+TGG | 0.266208 | 3_1:-79761517 | Msa0378910:CDS |
| CGAAGGATCAACGGTATTTC+CGG | 0.276497 | 3_1:+79764762 | None:intergenic |
| GACAAGTTGCTTCCTTTCTA+AGG | 0.282513 | 3_1:-79761550 | Msa0378910:CDS |
| CAATTAGCCCTTTGTTATAA+GGG | 0.322127 | 3_1:+79761816 | None:intergenic |
| TTCATTGCTGTCTGGTTTGT+TGG | 0.334463 | 3_1:-79762061 | Msa0378910:CDS |
| ATTCTCAGAGCAACAGTATA+AGG | 0.338816 | 3_1:+79761080 | None:intergenic |
| TTGTTATGTTCGGATTTGAT+AGG | 0.350269 | 3_1:-79761322 | Msa0378910:three_prime_UTR |
| GATTATAAAGACGAGGAATA+TGG | 0.354047 | 3_1:-79761641 | Msa0378910:CDS |
| TCCATTGACAATTACTTCCT+TGG | 0.361235 | 3_1:+79763015 | None:intergenic |
| AAAGCACAGAAAACAGCAAC+AGG | 0.373823 | 3_1:+79764537 | None:intergenic |
| AGTGATACATCTGTGGATTT+AGG | 0.375920 | 3_1:-79761602 | Msa0378910:CDS |
| CTTTCTAAGGCAGTCCTTGT+GGG | 0.391361 | 3_1:-79761537 | Msa0378910:CDS |
| TGTTATAAGGGTTGACTTGT+CGG | 0.392823 | 3_1:+79761828 | None:intergenic |
| CATTGTAAACTGGCATCATA+AGG | 0.394852 | 3_1:+79761684 | None:intergenic |
| TGCTCTGAGAATATAATTGC+CGG | 0.400359 | 3_1:-79761069 | Msa0378910:three_prime_UTR |
| ATTGAATATCCAGAGTGATT+AGG | 0.410341 | 3_1:+79764486 | None:intergenic |
| AGCAAAAGGCATGAACATAA+AGG | 0.422939 | 3_1:+79762179 | None:intergenic |
| GGGGCAGAGTTTGTTATGTT+CGG | 0.427660 | 3_1:-79761332 | Msa0378910:three_prime_UTR |
| TCATCAGCCTCATTGTAAAC+TGG | 0.432467 | 3_1:+79761674 | None:intergenic |
| GTAAATATAGATTTCACATC+AGG | 0.435683 | 3_1:+79764582 | None:intergenic |
| ATTATTAGTGCAATGGAAGC+AGG | 0.437732 | 3_1:+79762091 | None:intergenic |
| AAAACAATGCCGACGTCAAA+TGG | 0.448013 | 3_1:+79761044 | None:intergenic |
| CCATGGGTTGGTCAGTGTAT+TGG | 0.450019 | 3_1:-79762884 | Msa0378910:CDS |
| TTGTGCTGATTAGATATGTA+TGG | 0.451420 | 3_1:+79762023 | None:intergenic |
| GGAACAAAGCAGCAGAAAAT+GGG | 0.455188 | 3_1:-79761516 | Msa0378910:CDS |
| CATGAACATAAAGGCAAAGC+AGG | 0.455937 | 3_1:+79762188 | None:intergenic |
| TATACACATTCATTGCTGTC+TGG | 0.456264 | 3_1:-79762069 | Msa0378910:CDS |
| ATTGCTGTCTGGTTTGTTGG+AGG | 0.458351 | 3_1:-79762058 | Msa0378910:CDS |
| GCTACTGAGTTCGCCGGCGC+CGG | 0.464541 | 3_1:+79764784 | None:intergenic |
| GCAGTATGCTTCACACAGAA+AGG | 0.468722 | 3_1:-79761580 | Msa0378910:CDS |
| AAACAAACATGTAGTAGAAC+CGG | 0.470642 | 3_1:+79762221 | None:intergenic |
| TACTGAGCAATGAGAGCAGC+GGG | 0.473275 | 3_1:+79762943 | None:intergenic |
| CTGACCTCAGGAAGAGATCC+TGG | 0.475106 | 3_1:-79763136 | Msa0378910:CDS |
| CACTTCCATCATAATTATCT+GGG | 0.480034 | 3_1:+79763083 | None:intergenic |
| CACGGCGACAGCGCAATTAC+CGG | 0.481466 | 3_1:-79762240 | Msa0378910:intron |
| CAGTATGCTTCACACAGAAA+GGG | 0.481949 | 3_1:-79761579 | Msa0378910:CDS |
| CTTTGTCTAGATGATTCTGT+TGG | 0.483481 | 3_1:+79761719 | None:intergenic |
| CCTTTCTAAGGCAGTCCTTG+TGG | 0.491773 | 3_1:-79761538 | Msa0378910:CDS |
| GGTTGACTTGTCGGTCATAC+CGG | 0.492971 | 3_1:+79761837 | None:intergenic |
| TCCAAGGAAGTAATTGTCAA+TGG | 0.493913 | 3_1:-79763016 | Msa0378910:CDS |
| CCACTCCCAGATAATTATGA+TGG | 0.500454 | 3_1:-79763088 | Msa0378910:CDS |
| GAATTGCGAGGCACTATGCC+AGG | 0.501439 | 3_1:+79763118 | None:intergenic |
| AGCACAGAAAACAGCAACAG+GGG | 0.504125 | 3_1:+79764539 | None:intergenic |
| AAGATGATGAATAGAAATTG+TGG | 0.507076 | 3_1:-79761161 | Msa0378910:three_prime_UTR |
| TGTTATGTTCGGATTTGATA+GGG | 0.515498 | 3_1:-79761321 | Msa0378910:three_prime_UTR |
| ACAAATGCATCCTCCGGCGC+CGG | 0.518692 | 3_1:-79764797 | Msa0378910:exon |
| ACTCAGAGGAGATATCGATC+TGG | 0.527358 | 3_1:-79762132 | Msa0378910:CDS |
| TTTGCTGGGTTTACATCATG+AGG | 0.527634 | 3_1:-79762162 | Msa0378910:CDS |
| AAGCGGATCACCAGTGATAG+TGG | 0.528062 | 3_1:-79761446 | Msa0378910:CDS |
| ATTTCCTTTCCAAGCGCGAT+AGG | 0.533436 | 3_1:+79764729 | None:intergenic |
| CATGATGTAAACCCAGCAAA+AGG | 0.534339 | 3_1:+79762165 | None:intergenic |
| CCACAAGGACTGCCTTAGAA+AGG | 0.535328 | 3_1:+79761538 | None:intergenic |
| TTATTAGTGCAATGGAAGCA+GGG | 0.535975 | 3_1:+79762092 | None:intergenic |
| GATTTGATCATCACTGCCCA+TGG | 0.538217 | 3_1:-79762901 | Msa0378910:CDS |
| TCATCAGAACCTATCGCGCT+TGG | 0.540838 | 3_1:-79764738 | Msa0378910:CDS |
| AAGTCAACCCTTATAACAAA+GGG | 0.541030 | 3_1:-79761823 | Msa0378910:CDS |
| ATTGTAAACTGGCATCATAA+GGG | 0.543614 | 3_1:+79761685 | None:intergenic |
| AAGCACAGAAAACAGCAACA+GGG | 0.545403 | 3_1:+79764538 | None:intergenic |
| TCAAACACAAATGCATCCTC+CGG | 0.547234 | 3_1:-79764803 | Msa0378910:exon |
| TTTCCGGCTACTGAGTTCGC+CGG | 0.553399 | 3_1:+79764778 | None:intergenic |
| AGAACCTATCGCGCTTGGAA+AGG | 0.560307 | 3_1:-79764733 | Msa0378910:CDS |
| GATCATCACTGCCCATGGGT+TGG | 0.560369 | 3_1:-79762896 | Msa0378910:CDS |
| ACTGAGTTCGCCGGCGCCGG+AGG | 0.561048 | 3_1:+79764787 | None:intergenic |
| ATTGCTCTTATACTGACCTC+AGG | 0.563603 | 3_1:-79763148 | Msa0378910:CDS |
| CCATCATAATTATCTGGGAG+TGG | 0.563784 | 3_1:+79763088 | None:intergenic |
| AGGTTCATTACCACTATCAC+TGG | 0.565407 | 3_1:+79761436 | None:intergenic |
| ACCACATTTACCACGATCCA+AGG | 0.572679 | 3_1:-79763032 | Msa0378910:CDS |
| TCGGATTTGATAGGGAAGTA+CGG | 0.574055 | 3_1:-79761313 | Msa0378910:three_prime_UTR |
| ATGCCGACGTCAAATGGTGC+CGG | 0.574249 | 3_1:+79761050 | None:intergenic |
| ACAATTACTTCCTTGGATCG+TGG | 0.582722 | 3_1:+79763022 | None:intergenic |
| TCTGCTGCTTTGTTCCCACA+AGG | 0.583203 | 3_1:+79761523 | None:intergenic |
| CCAATACACTGACCAACCCA+TGG | 0.583973 | 3_1:+79762884 | None:intergenic |
| GCGCCGGCGAACTCAGTAGC+CGG | 0.585327 | 3_1:-79764781 | Msa0378910:CDS |
| TGTGTATATTATTAGTGCAA+TGG | 0.589926 | 3_1:+79762084 | None:intergenic |
| TTACAATGAGGCTGATGAGG+TGG | 0.589928 | 3_1:-79761669 | Msa0378910:CDS |
| ACAGAATCATCTAGACAAAG+AGG | 0.591209 | 3_1:-79761716 | Msa0378910:CDS |
| CAAGTCAACCCTTATAACAA+AGG | 0.591481 | 3_1:-79761824 | Msa0378910:CDS |
| GATCGTGGTAAATGTGGTGG+TGG | 0.591714 | 3_1:+79763037 | None:intergenic |
| ATTTGATCATCACTGCCCAT+GGG | 0.600506 | 3_1:-79762900 | Msa0378910:CDS |
| TCTGATGAGCGAAGGATCAA+CGG | 0.601917 | 3_1:+79764753 | None:intergenic |
| AGTATGCTTCACACAGAAAG+GGG | 0.616574 | 3_1:-79761578 | Msa0378910:CDS |
| AAGTAAATGAACATAATGGA+AGG | 0.617930 | 3_1:+79761130 | None:intergenic |
| TATTAGTGCAATGGAAGCAG+GGG | 0.618463 | 3_1:+79762093 | None:intergenic |
| CGATAGGTTCTGATGAGCGA+AGG | 0.621597 | 3_1:+79764745 | None:intergenic |
| TCCTTGGATCGTGGTAAATG+TGG | 0.622600 | 3_1:+79763031 | None:intergenic |
| GGTTGGTCAGTGTATTGGAC+TGG | 0.624376 | 3_1:-79762879 | Msa0378910:intron |
| TGATTTAAGTGATACATCTG+TGG | 0.629494 | 3_1:-79761609 | Msa0378910:CDS |
| TCATAATTATCTGGGAGTGG+AGG | 0.634751 | 3_1:+79763091 | None:intergenic |
| AGTTTACAATGAGGCTGATG+AGG | 0.639849 | 3_1:-79761672 | Msa0378910:CDS |
| TATGATGCCAGTTTACAATG+AGG | 0.640744 | 3_1:-79761681 | Msa0378910:CDS |
| ATATCTAATCAGCACAAACC+AGG | 0.643061 | 3_1:-79762017 | Msa0378910:intron |
| AGCTTCTGATGTTCTTGACG+AGG | 0.657463 | 3_1:-79761489 | Msa0378910:CDS |
| ATGAACATAAAGGCAAAGCA+GGG | 0.663108 | 3_1:+79762189 | None:intergenic |
| TTGGATCGTGGTAAATGTGG+TGG | 0.667113 | 3_1:+79763034 | None:intergenic |
| CAATACACTGACCAACCCAT+GGG | 0.670201 | 3_1:+79762885 | None:intergenic |
| ATACTGAGCAATGAGAGCAG+CGG | 0.679203 | 3_1:+79762942 | None:intergenic |
| AGTGATAGTGGTAATGAACC+TGG | 0.679603 | 3_1:-79761434 | Msa0378910:CDS |
| TATGCCAGGATCTCTTCCTG+AGG | 0.701986 | 3_1:+79763132 | None:intergenic |
| AGTGGAGGATAAGAATTGCG+AGG | 0.702045 | 3_1:+79763106 | None:intergenic |
| CATGAGGATCAAGAACTCAG+AGG | 0.703307 | 3_1:-79762146 | Msa0378910:CDS |
| TTGCCGGCACCATTTGACGT+CGG | 0.703566 | 3_1:-79761053 | Msa0378910:three_prime_UTR |
| GAGCAATGAGAGCAGCGGGG+AGG | 0.704186 | 3_1:+79762947 | None:intergenic |
| CTCAGTATGTGATAACTGTG+TGG | 0.713980 | 3_1:-79762927 | Msa0378910:CDS |
| ACGAAGACGACGAATCAAAG+CGG | 0.721141 | 3_1:-79761463 | Msa0378910:CDS |
| ACTGAGCAATGAGAGCAGCG+GGG | 0.779041 | 3_1:+79762944 | None:intergenic |
| GATAGTGGTAATGAACCTGG+TGG | 0.817967 | 3_1:-79761431 | Msa0378910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATCCTTATATAATTA+AGG | + | chr3_1:79761159-79761178 | None:intergenic | 10.0% |
| !! | TTAAAATTACAAAGAAAAAT+AGG | - | chr3_1:79764491-79764510 | Msa0378910:CDS | 10.0% |
| !! | AGTTAAACCTTAATTATATA+AGG | - | chr3_1:79761149-79761168 | Msa0378910:three_prime_UTR | 15.0% |
| !!! | TTGTATAAAATTTTTGAAGT+AGG | + | chr3_1:79761688-79761707 | None:intergenic | 15.0% |
| !!! | CTTCAAAAATTTTATACAAT+CGG | - | chr3_1:79761689-79761708 | Msa0378910:CDS | 15.0% |
| !!! | TTTGTAATGAAATATTTTCT+TGG | - | chr3_1:79762437-79762456 | Msa0378910:intron | 15.0% |
| !! | ATATTATTCCATTTCTAATT+AGG | + | chr3_1:79763393-79763412 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTAGTTATTCTG+TGG | - | chr3_1:79764623-79764642 | Msa0378910:intron | 15.0% |
| !! | AAAAAAGTAAATGAACATAA+TGG | + | chr3_1:79764726-79764745 | None:intergenic | 15.0% |
| !! | TGAATAAAAATGACTTACAA+AGG | + | chr3_1:79761415-79761434 | None:intergenic | 20.0% |
| !! | AAACTTCTTCTATTCTAAAT+AGG | + | chr3_1:79761769-79761788 | None:intergenic | 20.0% |
| !!! | TGTATAGCTAGATATTATTT+TGG | - | chr3_1:79761822-79761841 | Msa0378910:CDS | 20.0% |
| !! | CTAGATATAAATAAGATTTC+TGG | - | chr3_1:79761860-79761879 | Msa0378910:CDS | 20.0% |
| !! | AAACTATAAGAGAAACTATT+TGG | - | chr3_1:79762154-79762173 | Msa0378910:CDS | 20.0% |
| !! | AGATTTAGATATTAATGAGT+TGG | - | chr3_1:79762179-79762198 | Msa0378910:CDS | 20.0% |
| !!! | TTTTTTTTACCTGATTACTA+TGG | + | chr3_1:79762356-79762375 | None:intergenic | 20.0% |
| !! | ATTAAAATGATAGCACAAAT+TGG | + | chr3_1:79763036-79763055 | None:intergenic | 20.0% |
| !!! | CATATGAAAATTTTAGATAC+CGG | - | chr3_1:79763993-79764012 | Msa0378910:intron | 20.0% |
| !!! | GAATTTTTCTGAAATTATAG+AGG | + | chr3_1:79764460-79764479 | None:intergenic | 20.0% |
| !! | AAATTACAAAGAAAAATAGG+TGG | - | chr3_1:79764494-79764513 | Msa0378910:CDS | 20.0% |
| !! | AATTACAAAGAAAAATAGGT+GGG | - | chr3_1:79764495-79764514 | Msa0378910:CDS | 20.0% |
| !!! | TGATATAGTTCTTTTAAAAG+TGG | - | chr3_1:79764646-79764665 | Msa0378910:intron | 20.0% |
| !! | ACAAAAACAAAAGAAATGAA+GGG | + | chr3_1:79764749-79764768 | None:intergenic | 20.0% |
| !!! | AATGCTACTTTTTCTTTTTC+AGG | - | chr3_1:79761212-79761231 | Msa0378910:three_prime_UTR | 25.0% |
| ! | GTAAATATAGATTTCACATC+AGG | + | chr3_1:79761270-79761289 | None:intergenic | 25.0% |
| ! | TTCATAACTTGAATCCATTA+GGG | - | chr3_1:79761583-79761602 | Msa0378910:CDS | 25.0% |
| ! | ATGAGTTAAGAATAACTAAC+AGG | + | chr3_1:79761645-79761664 | None:intergenic | 25.0% |
| ! | TAGTTATTCTTAACTCATCA+TGG | - | chr3_1:79761647-79761666 | Msa0378910:CDS | 25.0% |
| ! | AGTTATTCTTAACTCATCAT+GGG | - | chr3_1:79761648-79761667 | Msa0378910:CDS | 25.0% |
| ! | AATAGAAGAAGTTTAGCATT+TGG | - | chr3_1:79761775-79761794 | Msa0378910:CDS | 25.0% |
| ! | TTAGCATTTGGACAAATTTA+TGG | - | chr3_1:79761787-79761806 | Msa0378910:CDS | 25.0% |
| ! | TATATCTAGCTAAGTATACT+TGG | + | chr3_1:79761849-79761868 | None:intergenic | 25.0% |
| !! | CACTATCTTTTCTACTATAT+AGG | + | chr3_1:79762019-79762038 | None:intergenic | 25.0% |
| ! | CTATATAGTAGAAAAGATAG+TGG | - | chr3_1:79762017-79762036 | Msa0378910:intron | 25.0% |
| !!! | TAGAAAAGATAGTGGAAAAT+AGG | - | chr3_1:79762025-79762044 | Msa0378910:CDS | 25.0% |
| !! | GTTTCTCTTATAGTTTTCAT+AGG | + | chr3_1:79762150-79762169 | None:intergenic | 25.0% |
| !! | TATTGTTGTTGTAAACTCTA+TGG | - | chr3_1:79762261-79762280 | Msa0378910:intron | 25.0% |
| !! | TGAAATATTTTCTTGGTGAA+TGG | - | chr3_1:79762444-79762463 | Msa0378910:intron | 25.0% |
| ! | ATTTACCTCCTAATTAGAAA+TGG | - | chr3_1:79763382-79763401 | Msa0378910:intron | 25.0% |
| ! | TTATTCCATTTCTAATTAGG+AGG | + | chr3_1:79763390-79763409 | None:intergenic | 25.0% |
| !! | TTGTTTCTTTGCATGTATAT+TGG | - | chr3_1:79763431-79763450 | Msa0378910:intron | 25.0% |
| ! | TGTGTATATTATTAGTGCAA+TGG | + | chr3_1:79763768-79763787 | None:intergenic | 25.0% |
| ! | ATAGTAAGTAGTCTCATTTA+AGG | + | chr3_1:79763889-79763908 | None:intergenic | 25.0% |
| ! | ACAAAAGGAACAATCATTAA+CGG | + | chr3_1:79763958-79763977 | None:intergenic | 25.0% |
| !!! | CTGAAATTGTTTTTGGATAT+GGG | + | chr3_1:79764091-79764110 | None:intergenic | 25.0% |
| ! | ATTACAAAGAAAAATAGGTG+GGG | - | chr3_1:79764496-79764515 | Msa0378910:CDS | 25.0% |
| !!! | TCATTGTTTTGGTCAAAAAA+TGG | - | chr3_1:79764567-79764586 | Msa0378910:CDS | 25.0% |
| ! | AAGATGATGAATAGAAATTG+TGG | - | chr3_1:79764688-79764707 | Msa0378910:intron | 25.0% |
| !! | AAGTAAATGAACATAATGGA+AGG | + | chr3_1:79764722-79764741 | None:intergenic | 25.0% |
| ! | GACAAAAACAAAAGAAATGA+AGG | + | chr3_1:79764750-79764769 | None:intergenic | 25.0% |
| !!! | CTTTTTCAGGTGTTTTTTCT+TGG | - | chr3_1:79761225-79761244 | Msa0378910:three_prime_UTR | 30.0% |
| ATTGAATATCCAGAGTGATT+AGG | + | chr3_1:79761366-79761385 | None:intergenic | 30.0% | |
| TATTATTGTTGTCGATGTGT+CGG | - | chr3_1:79761540-79761559 | Msa0378910:CDS | 30.0% | |
| CTTCATAACTTGAATCCATT+AGG | - | chr3_1:79761582-79761601 | Msa0378910:CDS | 30.0% | |
| ! | ATACAATCGGTTAGTTGAAA+AGG | - | chr3_1:79761702-79761721 | Msa0378910:CDS | 30.0% |
| TGATAACTGATAAGACTAGA+CGG | - | chr3_1:79761950-79761969 | Msa0378910:intron | 30.0% | |
| AGTTAGATTACAAGAGATAG+AGG | - | chr3_1:79762120-79762139 | Msa0378910:CDS | 30.0% | |
| ! | TAATGAGTTGGATCCAAATA+TGG | - | chr3_1:79762191-79762210 | Msa0378910:CDS | 30.0% |
| TACGCATCATAAACCATATT+TGG | + | chr3_1:79762207-79762226 | None:intergenic | 30.0% | |
| ! | TAGCTATATCCAACTTTTAG+AGG | - | chr3_1:79762503-79762522 | Msa0378910:intron | 30.0% |
| ! | AGCTATATCCAACTTTTAGA+GGG | - | chr3_1:79762504-79762523 | Msa0378910:intron | 30.0% |
| ! | CATAATTACCCTCTAAAAGT+TGG | + | chr3_1:79762515-79762534 | None:intergenic | 30.0% |
| ! | TAACGTGTTTAGGATTAAAG+TGG | + | chr3_1:79762662-79762681 | None:intergenic | 30.0% |
| CACTTCCATCATAATTATCT+GGG | + | chr3_1:79762769-79762788 | None:intergenic | 30.0% | |
| TCACTTCCATCATAATTATC+TGG | + | chr3_1:79762770-79762789 | None:intergenic | 30.0% | |
| ! | TCCTGAACAAACAATTTTAG+TGG | - | chr3_1:79763120-79763139 | Msa0378910:CDS | 30.0% |
| TCCACTAAAATTGTTTGTTC+AGG | + | chr3_1:79763124-79763143 | None:intergenic | 30.0% | |
| ATTGACAGCTTAGTCAATAA+GGG | + | chr3_1:79763341-79763360 | None:intergenic | 30.0% | |
| AATTGACAGCTTAGTCAATA+AGG | + | chr3_1:79763342-79763361 | None:intergenic | 30.0% | |
| GTCAATTTACTGTGATCAAA+TGG | - | chr3_1:79763355-79763374 | Msa0378910:intron | 30.0% | |
| CTCTTTGCTTTATATGTACA+CGG | - | chr3_1:79763591-79763610 | Msa0378910:intron | 30.0% | |
| AAACAAACATGTAGTAGAAC+CGG | + | chr3_1:79763631-79763650 | None:intergenic | 30.0% | |
| !! | TTGTGCTGATTAGATATGTA+TGG | + | chr3_1:79763829-79763848 | None:intergenic | 30.0% |
| GTAAGAAAAACGAACTAGAA+AGG | + | chr3_1:79763933-79763952 | None:intergenic | 30.0% | |
| AAGTCAACCCTTATAACAAA+GGG | - | chr3_1:79764026-79764045 | Msa0378910:intron | 30.0% | |
| ! | CAATTAGCCCTTTGTTATAA+GGG | + | chr3_1:79764036-79764055 | None:intergenic | 30.0% |
| ! | TCAATTAGCCCTTTGTTATA+AGG | + | chr3_1:79764037-79764056 | None:intergenic | 30.0% |
| !!! | ATTGTTTTTGGATATGGGAA+TGG | + | chr3_1:79764086-79764105 | None:intergenic | 30.0% |
| !!! | CCTGAAATTGTTTTTGGATA+TGG | + | chr3_1:79764092-79764111 | None:intergenic | 30.0% |
| CCATATCCAAAAACAATTTC+AGG | - | chr3_1:79764089-79764108 | Msa0378910:intron | 30.0% | |
| ATTGTAAACTGGCATCATAA+GGG | + | chr3_1:79764167-79764186 | None:intergenic | 30.0% | |
| GGAAAAAGATTATAAAGACG+AGG | - | chr3_1:79764201-79764220 | Msa0378910:intron | 30.0% | |
| GATTATAAAGACGAGGAATA+TGG | - | chr3_1:79764208-79764227 | Msa0378910:intron | 30.0% | |
| TGATTTAAGTGATACATCTG+TGG | - | chr3_1:79764240-79764259 | Msa0378910:intron | 30.0% | |
| TTACAAAGAAAAATAGGTGG+GGG | - | chr3_1:79764497-79764516 | Msa0378910:CDS | 30.0% | |
| TTGTTATGTTCGGATTTGAT+AGG | - | chr3_1:79764527-79764546 | Msa0378910:CDS | 30.0% | |
| TGTTATGTTCGGATTTGATA+GGG | - | chr3_1:79764528-79764547 | Msa0378910:CDS | 30.0% | |
| ! | TTTTGGTCAAAAAATGGCAT+TGG | - | chr3_1:79764573-79764592 | Msa0378910:CDS | 30.0% |
| !!! | TTTCAGGTGTTTTTTCTTGG+AGG | - | chr3_1:79761228-79761247 | Msa0378910:three_prime_UTR | 35.0% |
| !!! | TTCAGGTGTTTTTTCTTGGA+GGG | - | chr3_1:79761229-79761248 | Msa0378910:three_prime_UTR | 35.0% |
| ! | GATGATTTTCCTAATCACTC+TGG | - | chr3_1:79761354-79761373 | Msa0378910:three_prime_UTR | 35.0% |
| ATAATTCAATGTGTCAGCGT+CGG | + | chr3_1:79761504-79761523 | None:intergenic | 35.0% | |
| ! | TGGATTCAAGTTATGAAGCA+CGG | + | chr3_1:79761580-79761599 | None:intergenic | 35.0% |
| ! | TACTTAAAGCACTACCCTAA+TGG | + | chr3_1:79761600-79761619 | None:intergenic | 35.0% |
| ! | ATTAGGGTAGTGCTTTAAGT+AGG | - | chr3_1:79761599-79761618 | Msa0378910:CDS | 35.0% |
| GTTAAGAATAACTAACAGGC+AGG | + | chr3_1:79761641-79761660 | None:intergenic | 35.0% | |
| ! | AGATTTCTGGATATTGCTTG+TGG | - | chr3_1:79761873-79761892 | Msa0378910:intron | 35.0% |
| GATAACTGATAAGACTAGAC+GGG | - | chr3_1:79761951-79761970 | Msa0378910:intron | 35.0% | |
| !! | AGATAGTGGAAAATAGGCTT+AGG | - | chr3_1:79762031-79762050 | Msa0378910:CDS | 35.0% |
| AAAATAGGCTTAGGTGGTTT+GGG | - | chr3_1:79762040-79762059 | Msa0378910:CDS | 35.0% | |
| AGTAAGAAGAGTAGATCAGA+TGG | - | chr3_1:79762092-79762111 | Msa0378910:CDS | 35.0% | |
| GGACTACTTGTGTTAAGAAA+TGG | - | chr3_1:79762282-79762301 | Msa0378910:intron | 35.0% | |
| TTGTGTTAAGAAATGGAGCT+AGG | - | chr3_1:79762289-79762308 | Msa0378910:intron | 35.0% | |
| TGTGTTAAGAAATGGAGCTA+GGG | - | chr3_1:79762290-79762309 | Msa0378910:intron | 35.0% | |
| AAAATGAAGCGAAATGTGTC+AGG | - | chr3_1:79762324-79762343 | Msa0378910:intron | 35.0% | |
| !! | AGGTTTTGACCATAGTAATC+AGG | - | chr3_1:79762344-79762363 | Msa0378910:intron | 35.0% |
| AGTTGAGATAACTTCTTGCA+TGG | + | chr3_1:79762404-79762423 | None:intergenic | 35.0% | |
| GCAATACATGTAACGTGTTT+AGG | + | chr3_1:79762672-79762691 | None:intergenic | 35.0% | |
| TCCAAGGAAGTAATTGTCAA+TGG | - | chr3_1:79762833-79762852 | Msa0378910:intron | 35.0% | |
| TCCATTGACAATTACTTCCT+TGG | + | chr3_1:79762837-79762856 | None:intergenic | 35.0% | |
| AACATTGACCAAGTTGTCAA+AGG | - | chr3_1:79763143-79763162 | Msa0378910:CDS | 35.0% | |
| ACATTGACCAAGTTGTCAAA+GGG | - | chr3_1:79763144-79763163 | Msa0378910:CDS | 35.0% | |
| GTTGTTGTCATGTGATTGAA+AGG | - | chr3_1:79763188-79763207 | Msa0378910:intron | 35.0% | |
| !!! | CTTACCCTGTTTTTTTACAC+AGG | + | chr3_1:79763242-79763261 | None:intergenic | 35.0% |
| CGTGTACATATAAAGCAAAG+AGG | + | chr3_1:79763593-79763612 | None:intergenic | 35.0% | |
| ATGAACATAAAGGCAAAGCA+GGG | + | chr3_1:79763663-79763682 | None:intergenic | 35.0% | |
| ! | AGCAAAAGGCATGAACATAA+AGG | + | chr3_1:79763673-79763692 | None:intergenic | 35.0% |
| ! | TTTATGTTCATGCCTTTTGC+TGG | - | chr3_1:79763672-79763691 | Msa0378910:intron | 35.0% |
| ! | TTATGTTCATGCCTTTTGCT+GGG | - | chr3_1:79763673-79763692 | Msa0378910:intron | 35.0% |
| TTATTAGTGCAATGGAAGCA+GGG | + | chr3_1:79763760-79763779 | None:intergenic | 35.0% | |
| ATTATTAGTGCAATGGAAGC+AGG | + | chr3_1:79763761-79763780 | None:intergenic | 35.0% | |
| TATACACATTCATTGCTGTC+TGG | - | chr3_1:79763780-79763799 | Msa0378910:intron | 35.0% | |
| ATATCTAATCAGCACAAACC+AGG | - | chr3_1:79763832-79763851 | Msa0378910:intron | 35.0% | |
| AGTTAAGTAGTGTTCAAACC+TGG | + | chr3_1:79763853-79763872 | None:intergenic | 35.0% | |
| ! | GTAGTCTCATTTAAGGTCAA+GGG | + | chr3_1:79763882-79763901 | None:intergenic | 35.0% |
| ! | AGTAGTCTCATTTAAGGTCA+AGG | + | chr3_1:79763883-79763902 | None:intergenic | 35.0% |
| TAGACTGCACATAGAACAAA+AGG | + | chr3_1:79763973-79763992 | None:intergenic | 35.0% | |
| !! | TGTTATAAGGGTTGACTTGT+CGG | + | chr3_1:79764024-79764043 | None:intergenic | 35.0% |
| CAAGTCAACCCTTATAACAA+AGG | - | chr3_1:79764025-79764044 | Msa0378910:intron | 35.0% | |
| ! | CTTGGACCTGAAATTGTTTT+TGG | + | chr3_1:79764098-79764117 | None:intergenic | 35.0% |
| ! | CAAAAACAATTTCAGGTCCA+AGG | - | chr3_1:79764096-79764115 | Msa0378910:intron | 35.0% |
| !!! | GATGATTCTGTTGGTTCTTT+TGG | + | chr3_1:79764124-79764143 | None:intergenic | 35.0% |
| CTTTGTCTAGATGATTCTGT+TGG | + | chr3_1:79764133-79764152 | None:intergenic | 35.0% | |
| ACAGAATCATCTAGACAAAG+AGG | - | chr3_1:79764133-79764152 | Msa0378910:intron | 35.0% | |
| CATTGTAAACTGGCATCATA+AGG | + | chr3_1:79764168-79764187 | None:intergenic | 35.0% | |
| TATGATGCCAGTTTACAATG+AGG | - | chr3_1:79764168-79764187 | Msa0378910:intron | 35.0% | |
| AGTGATACATCTGTGGATTT+AGG | - | chr3_1:79764247-79764266 | Msa0378910:intron | 35.0% | |
| TACAAAGAAAAATAGGTGGG+GGG | - | chr3_1:79764498-79764517 | Msa0378910:CDS | 35.0% | |
| ATTCTCAGAGCAACAGTATA+AGG | + | chr3_1:79764772-79764791 | None:intergenic | 35.0% | |
| !! | TGCTCTGAGAATATAATTGC+CGG | - | chr3_1:79764780-79764799 | Msa0378910:CDS | 35.0% |
| TCAAACACAAATGCATCCTC+CGG | - | chr3_1:79761046-79761065 | Msa0378910:three_prime_UTR | 40.0% | |
| CTTGGAGGGAGGTTTATATT+TGG | - | chr3_1:79761243-79761262 | Msa0378910:three_prime_UTR | 40.0% | |
| AAGCACAGAAAACAGCAACA+GGG | + | chr3_1:79761314-79761333 | None:intergenic | 40.0% | |
| AAAGCACAGAAAACAGCAAC+AGG | + | chr3_1:79761315-79761334 | None:intergenic | 40.0% | |
| ATAACTAACAGGCAGGTCAT+AGG | + | chr3_1:79761634-79761653 | None:intergenic | 40.0% | |
| ! | GGTTAGTTGAAAAGGACTTG+AGG | - | chr3_1:79761710-79761729 | Msa0378910:CDS | 40.0% |
| TGACACATTAGAGAGAGAGT+TGG | - | chr3_1:79761986-79762005 | Msa0378910:intron | 40.0% | |
| TAGTGGAAAATAGGCTTAGG+TGG | - | chr3_1:79762034-79762053 | Msa0378910:CDS | 40.0% | |
| GAAAATAGGCTTAGGTGGTT+TGG | - | chr3_1:79762039-79762058 | Msa0378910:CDS | 40.0% | |
| AAGAAGAGTAGATCAGATGG+AGG | - | chr3_1:79762095-79762114 | Msa0378910:CDS | 40.0% | |
| CGTAATTTGATCCATGTAGC+CGG | - | chr3_1:79762223-79762242 | Msa0378910:CDS | 40.0% | |
| ACAACAATATCCCACCAAGT+GGG | + | chr3_1:79762250-79762269 | None:intergenic | 40.0% | |
| AACAACAATATCCCACCAAG+TGG | + | chr3_1:79762251-79762270 | None:intergenic | 40.0% | |
| AACACGTTACATGTATTGCC+AGG | - | chr3_1:79762673-79762692 | Msa0378910:intron | 40.0% | |
| GTATAAGAGCAATCAGAACC+TGG | + | chr3_1:79762694-79762713 | None:intergenic | 40.0% | |
| ATTGCTCTTATACTGACCTC+AGG | - | chr3_1:79762701-79762720 | Msa0378910:intron | 40.0% | |
| TCATAATTATCTGGGAGTGG+AGG | + | chr3_1:79762761-79762780 | None:intergenic | 40.0% | |
| CCATCATAATTATCTGGGAG+TGG | + | chr3_1:79762764-79762783 | None:intergenic | 40.0% | |
| CCACTCCCAGATAATTATGA+TGG | - | chr3_1:79762761-79762780 | Msa0378910:intron | 40.0% | |
| ACAATTACTTCCTTGGATCG+TGG | + | chr3_1:79762830-79762849 | None:intergenic | 40.0% | |
| CTCAGTATGTGATAACTGTG+TGG | - | chr3_1:79762922-79762941 | Msa0378910:CDS | 40.0% | |
| ATTTGATCATCACTGCCCAT+GGG | - | chr3_1:79762949-79762968 | Msa0378910:CDS | 40.0% | |
| CATTGACCAAGTTGTCAAAG+GGG | - | chr3_1:79763145-79763164 | Msa0378910:CDS | 40.0% | |
| AGCCTCCTGTGTAAAAAAAC+AGG | - | chr3_1:79763234-79763253 | Msa0378910:intron | 40.0% | |
| GCCTCCTGTGTAAAAAAACA+GGG | - | chr3_1:79763235-79763254 | Msa0378910:intron | 40.0% | |
| !!! | ACCCTGTTTTTTTACACAGG+AGG | + | chr3_1:79763239-79763258 | None:intergenic | 40.0% |
| CTGCGTACAATACACCAAAA+TGG | - | chr3_1:79763263-79763282 | Msa0378910:intron | 40.0% | |
| TTCCCAAACATCACACTCAT+TGG | - | chr3_1:79763468-79763487 | Msa0378910:intron | 40.0% | |
| GACCAATGAGTGTGATGTTT+GGG | + | chr3_1:79763473-79763492 | None:intergenic | 40.0% | |
| TGACCAATGAGTGTGATGTT+TGG | + | chr3_1:79763474-79763493 | None:intergenic | 40.0% | |
| CATGAACATAAAGGCAAAGC+AGG | + | chr3_1:79763664-79763683 | None:intergenic | 40.0% | |
| CATGATGTAAACCCAGCAAA+AGG | + | chr3_1:79763687-79763706 | None:intergenic | 40.0% | |
| TTTGCTGGGTTTACATCATG+AGG | - | chr3_1:79763687-79763706 | Msa0378910:intron | 40.0% | |
| TATTAGTGCAATGGAAGCAG+GGG | + | chr3_1:79763759-79763778 | None:intergenic | 40.0% | |
| ! | TTCATTGCTGTCTGGTTTGT+TGG | - | chr3_1:79763788-79763807 | Msa0378910:intron | 40.0% |
| !!! | TGTTGGTTCTTTTGGAACCT+TGG | + | chr3_1:79764116-79764135 | None:intergenic | 40.0% |
| TCATCAGCCTCATTGTAAAC+TGG | + | chr3_1:79764178-79764197 | None:intergenic | 40.0% | |
| AGTTTACAATGAGGCTGATG+AGG | - | chr3_1:79764177-79764196 | Msa0378910:intron | 40.0% | |
| CAGTATGCTTCACACAGAAA+GGG | - | chr3_1:79764270-79764289 | Msa0378910:intron | 40.0% | |
| AGTATGCTTCACACAGAAAG+GGG | - | chr3_1:79764271-79764290 | Msa0378910:intron | 40.0% | |
| GACAAGTTGCTTCCTTTCTA+AGG | - | chr3_1:79764299-79764318 | Msa0378910:intron | 40.0% | |
| GGAACAAAGCAGCAGAAAAT+GGG | - | chr3_1:79764333-79764352 | Msa0378910:intron | 40.0% | |
| AGGTTCATTACCACTATCAC+TGG | + | chr3_1:79764416-79764435 | None:intergenic | 40.0% | |
| !! | AGTGATAGTGGTAATGAACC+TGG | - | chr3_1:79764415-79764434 | Msa0378910:intron | 40.0% |
| TCGGATTTGATAGGGAAGTA+CGG | - | chr3_1:79764536-79764555 | Msa0378910:CDS | 40.0% | |
| ! | CGGCTTGTGTTTCATTGTTT+TGG | - | chr3_1:79764556-79764575 | Msa0378910:CDS | 40.0% |
| CGAAGGATCAACGGTATTTC+CGG | + | chr3_1:79761090-79761109 | None:intergenic | 45.0% | |
| TCTGATGAGCGAAGGATCAA+CGG | + | chr3_1:79761099-79761118 | None:intergenic | 45.0% | |
| ATTTCCTTTCCAAGCGCGAT+AGG | + | chr3_1:79761123-79761142 | None:intergenic | 45.0% | |
| !!! | AGGTGTTTTTTCTTGGAGGG+AGG | - | chr3_1:79761232-79761251 | Msa0378910:three_prime_UTR | 45.0% |
| AGCACAGAAAACAGCAACAG+GGG | + | chr3_1:79761313-79761332 | None:intergenic | 45.0% | |
| CAACAATATCCCACCAAGTG+GGG | + | chr3_1:79762249-79762268 | None:intergenic | 45.0% | |
| GTTAAGAAATGGAGCTAGGG+AGG | - | chr3_1:79762293-79762312 | Msa0378910:intron | 45.0% | |
| AGTGGAGGATAAGAATTGCG+AGG | + | chr3_1:79762746-79762765 | None:intergenic | 45.0% | |
| TTGGATCGTGGTAAATGTGG+TGG | + | chr3_1:79762818-79762837 | None:intergenic | 45.0% | |
| ACCACATTTACCACGATCCA+AGG | - | chr3_1:79762817-79762836 | Msa0378910:intron | 45.0% | |
| TCCTTGGATCGTGGTAAATG+TGG | + | chr3_1:79762821-79762840 | None:intergenic | 45.0% | |
| ATACTGAGCAATGAGAGCAG+CGG | + | chr3_1:79762910-79762929 | None:intergenic | 45.0% | |
| GATTTGATCATCACTGCCCA+TGG | - | chr3_1:79762948-79762967 | Msa0378910:CDS | 45.0% | |
| CAATACACTGACCAACCCAT+GGG | + | chr3_1:79762967-79762986 | None:intergenic | 45.0% | |
| AAGACTCCCCTTTGACAACT+TGG | + | chr3_1:79763154-79763173 | None:intergenic | 45.0% | |
| AAGTTGTCAAAGGGGAGTCT+TGG | - | chr3_1:79763153-79763172 | Msa0378910:CDS | 45.0% | |
| AAGGTCACAGATTCTAGTCC+TGG | - | chr3_1:79763207-79763226 | Msa0378910:intron | 45.0% | |
| AAAATGGTTGAACCTCGTCC+CGG | - | chr3_1:79763279-79763298 | Msa0378910:intron | 45.0% | |
| CTTAGTCAATAAGGGAAGCC+CGG | + | chr3_1:79763333-79763352 | None:intergenic | 45.0% | |
| CATGAGGATCAAGAACTCAG+AGG | - | chr3_1:79763703-79763722 | Msa0378910:intron | 45.0% | |
| ACTCAGAGGAGATATCGATC+TGG | - | chr3_1:79763717-79763736 | Msa0378910:intron | 45.0% | |
| !! | ATTGCTGTCTGGTTTGTTGG+AGG | - | chr3_1:79763791-79763810 | Msa0378910:intron | 45.0% |
| TTACAATGAGGCTGATGAGG+TGG | - | chr3_1:79764180-79764199 | Msa0378910:intron | 45.0% | |
| GCAGTATGCTTCACACAGAA+AGG | - | chr3_1:79764269-79764288 | Msa0378910:intron | 45.0% | |
| !! | CTTTCTAAGGCAGTCCTTGT+GGG | - | chr3_1:79764312-79764331 | Msa0378910:intron | 45.0% |
| GGGAACAAAGCAGCAGAAAA+TGG | - | chr3_1:79764332-79764351 | Msa0378910:intron | 45.0% | |
| AGCTTCTGATGTTCTTGACG+AGG | - | chr3_1:79764360-79764379 | Msa0378910:intron | 45.0% | |
| ACGAAGACGACGAATCAAAG+CGG | - | chr3_1:79764386-79764405 | Msa0378910:intron | 45.0% | |
| ! | GATAGTGGTAATGAACCTGG+TGG | - | chr3_1:79764418-79764437 | Msa0378910:intron | 45.0% |
| !! | GTTTTTGTTGAGTTGCCACC+AGG | + | chr3_1:79764436-79764455 | None:intergenic | 45.0% |
| !! | GGGGCAGAGTTTGTTATGTT+CGG | - | chr3_1:79764517-79764536 | Msa0378910:CDS | 45.0% |
| !! | AATATAATAAAAAATAGTAA+TGG | - | chr3_1:79763408-79763427 | Msa0378910:intron | 5.0% |
| ! | CGATAGGTTCTGATGAGCGA+AGG | + | chr3_1:79761107-79761126 | None:intergenic | 50.0% |
| TCATCAGAACCTATCGCGCT+TGG | - | chr3_1:79761111-79761130 | Msa0378910:three_prime_UTR | 50.0% | |
| AGAACCTATCGCGCTTGGAA+AGG | - | chr3_1:79761116-79761135 | Msa0378910:three_prime_UTR | 50.0% | |
| TATGCCAGGATCTCTTCCTG+AGG | + | chr3_1:79762720-79762739 | None:intergenic | 50.0% | |
| GATCGTGGTAAATGTGGTGG+TGG | + | chr3_1:79762815-79762834 | None:intergenic | 50.0% | |
| TACTGAGCAATGAGAGCAGC+GGG | + | chr3_1:79762909-79762928 | None:intergenic | 50.0% | |
| CCAATACACTGACCAACCCA+TGG | + | chr3_1:79762968-79762987 | None:intergenic | 50.0% | |
| !! | CCATGGGTTGGTCAGTGTAT+TGG | - | chr3_1:79762965-79762984 | Msa0378910:CDS | 50.0% |
| ! | GGTTGGTCAGTGTATTGGAC+TGG | - | chr3_1:79762970-79762989 | Msa0378910:CDS | 50.0% |
| ! | TTACACAGGAGGCTGTTTCC+AGG | + | chr3_1:79763228-79763247 | None:intergenic | 50.0% |
| ! | GGGACGAGGTTCAACCATTT+TGG | + | chr3_1:79763280-79763299 | None:intergenic | 50.0% |
| CTAAAGCTCCTGCATACGCA+GGG | + | chr3_1:79763306-79763325 | None:intergenic | 50.0% | |
| ACTAAAGCTCCTGCATACGC+AGG | + | chr3_1:79763307-79763326 | None:intergenic | 50.0% | |
| ! | ATGCAGGAGCTTTAGTGCAC+CGG | - | chr3_1:79763311-79763330 | Msa0378910:intron | 50.0% |
| !! | GGTTGACTTGTCGGTCATAC+CGG | + | chr3_1:79764015-79764034 | None:intergenic | 50.0% |
| CCACAAGGACTGCCTTAGAA+AGG | + | chr3_1:79764314-79764333 | None:intergenic | 50.0% | |
| !! | CCTTTCTAAGGCAGTCCTTG+TGG | - | chr3_1:79764311-79764330 | Msa0378910:intron | 50.0% |
| !! | TCTGCTGCTTTGTTCCCACA+AGG | + | chr3_1:79764329-79764348 | None:intergenic | 50.0% |
| AAGCGGATCACCAGTGATAG+TGG | - | chr3_1:79764403-79764422 | Msa0378910:intron | 50.0% | |
| TTTCCGGCTACTGAGTTCGC+CGG | + | chr3_1:79761074-79761093 | None:intergenic | 55.0% | |
| AATATCCCACCAAGTGGGGC+CGG | + | chr3_1:79762245-79762264 | None:intergenic | 55.0% | |
| CTGACCTCAGGAAGAGATCC+TGG | - | chr3_1:79762713-79762732 | Msa0378910:intron | 55.0% | |
| ! | GAATTGCGAGGCACTATGCC+AGG | + | chr3_1:79762734-79762753 | None:intergenic | 55.0% |
| ACTGAGCAATGAGAGCAGCG+GGG | + | chr3_1:79762908-79762927 | None:intergenic | 55.0% | |
| GATCATCACTGCCCATGGGT+TGG | - | chr3_1:79762953-79762972 | Msa0378910:CDS | 55.0% | |
| ! | TGCAGGAGCTTTAGTGCACC+GGG | - | chr3_1:79763312-79763331 | Msa0378910:intron | 55.0% |
| TTGCCGGCACCATTTGACGT+CGG | - | chr3_1:79764796-79764815 | Msa0378910:CDS | 55.0% | |
| ATGCCGACGTCAAATGGTGC+CGG | + | chr3_1:79764802-79764821 | None:intergenic | 55.0% | |
| ACAAATGCATCCTCCGGCGC+CGG | - | chr3_1:79761052-79761071 | Msa0378910:three_prime_UTR | 60.0% | |
| CACGGCGACAGCGCAATTAC+CGG | - | chr3_1:79763609-79763628 | Msa0378910:intron | 60.0% | |
| TCCATGTAGCCGGCCCCACT+TGG | - | chr3_1:79762233-79762252 | Msa0378910:intron | 65.0% | |
| ACCAAGTGGGGCCGGCTACA+TGG | + | chr3_1:79762237-79762256 | None:intergenic | 65.0% | |
| ATGTAGCCGGCCCCACTTGG+TGG | - | chr3_1:79762236-79762255 | Msa0378910:intron | 65.0% | |
| TGTAGCCGGCCCCACTTGGT+GGG | - | chr3_1:79762237-79762256 | Msa0378910:intron | 65.0% | |
| GAGCAATGAGAGCAGCGGGG+AGG | + | chr3_1:79762905-79762924 | None:intergenic | 65.0% | |
| CTCCTGCATACGCAGGGTCC+GGG | + | chr3_1:79763300-79763319 | None:intergenic | 65.0% | |
| GCTCCTGCATACGCAGGGTC+CGG | + | chr3_1:79763301-79763320 | None:intergenic | 65.0% | |
| GCTACTGAGTTCGCCGGCGC+CGG | + | chr3_1:79761068-79761087 | None:intergenic | 70.0% | |
| ! | GCGCCGGCGAACTCAGTAGC+CGG | - | chr3_1:79761068-79761087 | Msa0378910:three_prime_UTR | 70.0% |
| CATACGCAGGGTCCGGGACG+AGG | + | chr3_1:79763294-79763313 | None:intergenic | 70.0% | |
| GTCCCGGACCCTGCGTATGC+AGG | - | chr3_1:79763295-79763314 | Msa0378910:intron | 70.0% | |
| ! | ACTGAGTTCGCCGGCGCCGG+AGG | + | chr3_1:79761065-79761084 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 79761045 | 79764826 | 79761045 | ID=Msa0378910;Name=Msa0378910 |
| chr3_1 | mRNA | 79761045 | 79764826 | 79761045 | ID=Msa0378910-mRNA-1;Parent=Msa0378910;Name=Msa0378910-mRNA-1;_AED=0.05;_eAED=0.05;_QI=11|1|1|1|1|1|5|361|426 |
| chr3_1 | exon | 79761045 | 79761882 | 79761045 | ID=Msa0378910-mRNA-1:exon:19748;Parent=Msa0378910-mRNA-1 |
| chr3_1 | exon | 79762018 | 79762251 | 79762018 | ID=Msa0378910-mRNA-1:exon:19747;Parent=Msa0378910-mRNA-1 |
| chr3_1 | exon | 79762880 | 79763176 | 79762880 | ID=Msa0378910-mRNA-1:exon:19746;Parent=Msa0378910-mRNA-1 |
| chr3_1 | exon | 79764455 | 79764637 | 79764455 | ID=Msa0378910-mRNA-1:exon:19745;Parent=Msa0378910-mRNA-1 |
| chr3_1 | exon | 79764726 | 79764826 | 79764726 | ID=Msa0378910-mRNA-1:exon:19744;Parent=Msa0378910-mRNA-1 |
| chr3_1 | five_prime_UTR | 79764816 | 79764826 | 79764816 | ID=Msa0378910-mRNA-1:five_prime_utr;Parent=Msa0378910-mRNA-1 |
| chr3_1 | CDS | 79764726 | 79764815 | 79764726 | ID=Msa0378910-mRNA-1:cds;Parent=Msa0378910-mRNA-1 |
| chr3_1 | CDS | 79764455 | 79764637 | 79764455 | ID=Msa0378910-mRNA-1:cds;Parent=Msa0378910-mRNA-1 |
| chr3_1 | CDS | 79762880 | 79763176 | 79762880 | ID=Msa0378910-mRNA-1:cds;Parent=Msa0378910-mRNA-1 |
| chr3_1 | CDS | 79762018 | 79762251 | 79762018 | ID=Msa0378910-mRNA-1:cds;Parent=Msa0378910-mRNA-1 |
| chr3_1 | CDS | 79761406 | 79761882 | 79761406 | ID=Msa0378910-mRNA-1:cds;Parent=Msa0378910-mRNA-1 |
| chr3_1 | three_prime_UTR | 79761045 | 79761405 | 79761045 | ID=Msa0378910-mRNA-1:three_prime_utr;Parent=Msa0378910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
