AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0736870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0736870 MtrunA17_Chr5g0434571 93.884 327 13 3 1 327 37 356 0.0 561
Msa0736870 MtrunA17_Chr3g0110351 64.688 337 83 7 1 327 1 311 2.78e-131 376
Msa0736870 MtrunA17_Chr4g0057031 79.470 151 30 1 1 150 1 151 4.79e-84 254
Msa0736870 MtrunA17_Chr7g0228891 79.845 129 26 0 1 129 1 129 2.08e-75 233
Msa0736870 MtrunA17_Chr4g0039971 72.656 128 35 0 1 128 2 129 6.08e-67 214
Msa0736870 MtrunA17_Chr6g0453471 55.330 197 78 3 1 190 1 194 8.16e-67 213
Msa0736870 MtrunA17_Chr7g0217741 71.094 128 37 0 1 128 1 128 1.01e-65 209
Msa0736870 MtrunA17_Chr8g0349261 72.593 135 35 2 1 133 1 135 1.53e-65 208
Msa0736870 MtrunA17_Chr3g0115821 70.312 128 38 0 1 128 1 128 5.38e-65 208
Msa0736870 MtrunA17_Chr4g0042671 72.656 128 35 0 1 128 1 128 2.01e-64 209
Msa0736870 MtrunA17_Chr5g0410961 69.531 128 39 0 1 128 1 128 3.65e-63 204
Msa0736870 MtrunA17_Chr4g0037141 55.556 171 64 2 1 170 1 160 1.75e-62 200
Msa0736870 MtrunA17_Chr2g0281071 69.767 129 38 1 1 128 1 129 3.91e-62 201
Msa0736870 MtrunA17_Chr2g0323411 70.312 128 38 0 1 128 1 128 5.34e-62 200
Msa0736870 MtrunA17_Chr4g0048511 68.992 129 39 1 1 128 1 129 1.72e-61 200
Msa0736870 MtrunA17_Chr1g0193371 66.923 130 43 0 1 130 1 130 9.45e-61 198
Msa0736870 MtrunA17_Chr3g0131121 65.891 129 44 0 1 129 1 129 1.05e-59 193
Msa0736870 MtrunA17_Chr5g0395281 64.844 128 45 0 1 128 1 128 1.94e-59 193
Msa0736870 MtrunA17_Chr7g0270891 60.690 145 57 0 1 145 1 145 2.32e-59 194
Msa0736870 MtrunA17_Chr8g0385321 65.116 129 45 0 1 129 1 129 2.97e-59 192
Msa0736870 MtrunA17_Chr3g0117091 65.891 129 44 0 1 129 1 129 1.15e-58 192
Msa0736870 MtrunA17_Chr1g0193801 64.615 130 46 0 1 130 1 130 1.93e-58 192
Msa0736870 MtrunA17_Chr3g0103281 59.184 147 60 0 1 147 1 147 3.04e-58 190
Msa0736870 MtrunA17_Chr1g0211161 55.758 165 72 1 3 167 4 167 3.38e-58 187
Msa0736870 MtrunA17_Chr4g0058631 66.154 130 44 0 1 130 1 130 4.18e-58 191
Msa0736870 MtrunA17_Chr5g0435101 63.200 125 46 0 3 127 2 126 4.68e-57 184
Msa0736870 MtrunA17_Chr7g0261281 70.690 116 34 0 1 116 1 116 1.38e-56 184
Msa0736870 MtrunA17_Chr3g0121241 55.000 160 70 1 5 162 35 194 1.81e-56 185
Msa0736870 MtrunA17_Chr7g0271241 66.176 136 46 0 1 136 1 136 2.30e-56 187
Msa0736870 MtrunA17_Chr6g0452271 60.769 130 51 0 1 130 1 130 3.29e-55 183
Msa0736870 MtrunA17_Chr1g0187761 38.380 284 139 5 1 283 1 249 5.14e-54 177
Msa0736870 MtrunA17_Chr1g0194951 42.353 255 127 6 1 249 1 241 7.86e-54 180
Msa0736870 MtrunA17_Chr2g0309911 61.654 133 50 1 1 133 1 132 1.24e-53 178
Msa0736870 MtrunA17_Chr4g0068061 65.517 116 40 0 1 116 1 116 1.54e-53 179
Msa0736870 MtrunA17_Chr7g0274581 63.559 118 43 0 1 118 1 118 1.64e-53 174
Msa0736870 MtrunA17_Chr7g0275911 64.103 117 42 0 1 117 1 117 5.73e-53 174
Msa0736870 MtrunA17_Chr1g0203411 61.864 118 45 0 1 118 1 118 1.49e-52 175
Msa0736870 MtrunA17_Chr3g0092401 63.866 119 43 0 1 119 2 120 1.50e-52 175
Msa0736870 MtrunA17_Chr7g0217221 67.797 118 38 0 1 118 1 118 1.71e-52 174
Msa0736870 MtrunA17_Chr4g0060721 62.712 118 44 0 1 118 2 119 3.29e-52 175
Msa0736870 MtrunA17_Chr8g0346561 62.712 118 44 0 1 118 1 118 6.31e-52 173
Msa0736870 MtrunA17_Chr4g0044421 64.000 125 44 1 3 126 2 126 6.45e-52 170
Msa0736870 MtrunA17_Chr8g0342521 62.602 123 46 0 1 123 1 123 6.46e-52 174
Msa0736870 MtrunA17_Chr1g0167691 65.517 116 40 0 1 116 1 116 1.32e-51 171
Msa0736870 MtrunA17_Chr1g0167661 66.379 116 39 0 1 116 1 116 1.37e-51 171
Msa0736870 MtrunA17_Chr2g0330041 61.600 125 48 0 1 125 1 125 1.44e-51 175
Msa0736870 MtrunA17_Chr8g0342541 61.789 123 47 0 1 123 1 123 8.04e-51 172
Msa0736870 MtrunA17_Chr7g0254411 62.400 125 45 1 1 123 1 125 1.17e-50 171
Msa0736870 MtrunA17_Chr8g0387421 61.864 118 45 0 1 118 1 118 2.69e-50 169
Msa0736870 MtrunA17_Chr7g0269831 68.103 116 37 0 1 116 1 116 4.60e-50 170
Msa0736870 MtrunA17_Chr8g0342481 64.103 117 41 1 1 116 1 117 5.89e-50 171
Msa0736870 MtrunA17_Chr4g0070611 63.025 119 44 0 1 119 1 119 2.35e-49 167
Msa0736870 MtrunA17_Chr4g0022901 62.069 116 43 1 1 115 1 116 5.52e-49 165
Msa0736870 MtrunA17_Chr2g0311221 67.273 110 36 0 2 111 4 113 6.73e-49 166
Msa0736870 MtrunA17_Chr4g0022911 60.345 116 45 1 1 115 1 116 8.04e-49 165
Msa0736870 MtrunA17_Chr4g0022931 58.400 125 51 1 1 124 1 125 8.46e-49 164
Msa0736870 MtrunA17_Chr2g0323351 63.559 118 43 0 1 118 1 118 8.99e-49 163
Msa0736870 MtrunA17_Chr4g0070641 63.025 119 44 0 1 119 1 119 1.18e-48 160
Msa0736870 MtrunA17_Chr5g0417821 62.185 119 45 0 10 128 5 123 3.54e-48 163
Msa0736870 MtrunA17_Chr1g0151941 39.056 233 128 6 1 220 1 232 9.19e-48 161
Msa0736870 MtrunA17_Chr4g0032401 64.865 111 39 0 12 122 17 127 2.34e-47 162
Msa0736870 MtrunA17_Chr6g0453211 63.964 111 40 0 1 111 1 111 4.03e-47 161
Msa0736870 MtrunA17_Chr5g0397231 61.818 110 42 0 1 110 1 110 4.97e-47 162
Msa0736870 MtrunA17_Chr2g0328771 64.815 108 38 0 12 119 20 127 1.45e-46 160
Msa0736870 MtrunA17_Chr5g0400821 59.829 117 46 1 1 116 1 117 8.20e-45 155
Msa0736870 MtrunA17_Chr4g0028311 53.906 128 58 1 1 127 1 128 1.12e-44 155
Msa0736870 MtrunA17_Chr7g0247131 76.136 88 21 0 43 130 9 96 1.50e-44 153
Msa0736870 MtrunA17_Chr1g0152011 59.829 117 46 1 1 116 1 117 1.91e-44 155
Msa0736870 MtrunA17_Chr3g0088461 61.818 110 42 0 8 117 18 127 2.52e-44 154
Msa0736870 MtrunA17_Chr7g0264641 57.500 120 50 1 1 119 1 120 2.83e-44 152
Msa0736870 MtrunA17_Chr6g0470971 52.113 142 65 2 1 140 1 141 7.77e-44 152
Msa0736870 MtrunA17_Chr4g0022881 57.895 114 48 0 1 114 1 114 1.12e-43 150
Msa0736870 MtrunA17_Chr1g0168661 63.810 105 38 0 13 117 22 126 1.26e-43 150
Msa0736870 MtrunA17_Chr4g0022891 49.324 148 71 1 1 144 1 148 2.60e-43 149
Msa0736870 MtrunA17_Chr1g0203441 58.824 119 48 1 1 118 1 119 3.13e-43 150
Msa0736870 MtrunA17_Chr7g0228231 60.748 107 42 0 12 118 14 120 4.94e-43 147
Msa0736870 MtrunA17_Chr8g0354661 61.321 106 41 0 10 115 35 140 7.90e-43 155
Msa0736870 MtrunA17_Chr1g0186061 61.905 105 40 0 13 117 21 125 1.38e-42 147
Msa0736870 MtrunA17_Chr6g0450101 55.372 121 52 1 1 119 1 121 1.77e-42 146
Msa0736870 MtrunA17_Chr3g0135311 57.265 117 49 1 1 116 1 117 2.12e-42 150
Msa0736870 MtrunA17_Chr2g0327351 58.559 111 45 1 1 110 1 111 4.05e-42 148
Msa0736870 MtrunA17_Chr1g0209661 55.856 111 49 0 12 122 27 137 1.41e-41 147
Msa0736870 MtrunA17_Chr1g0194291 54.783 115 52 0 8 122 17 131 1.60e-41 145
Msa0736870 MtrunA17_Chr4g0072751 58.559 111 45 1 1 110 1 111 2.49e-41 147
Msa0736870 MtrunA17_Chr4g0054391 59.091 110 44 1 1 109 1 110 5.53e-41 144
Msa0736870 MtrunA17_Chr3g0099131 58.879 107 44 0 12 118 41 147 5.67e-41 150
Msa0736870 MtrunA17_Chr1g0194301 52.174 115 55 0 8 122 29 143 6.15e-40 141
Msa0736870 MtrunA17_Chr3g0080861 55.556 108 48 0 10 117 35 142 9.83e-40 146
Msa0736870 MtrunA17_Chr2g0327821 55.660 106 47 0 12 117 6 111 2.40e-39 139
Msa0736870 MtrunA17_Chr6g0487491 52.419 124 50 2 1 115 1 124 5.56e-39 138
Msa0736870 MtrunA17_Chr1g0180391 52.632 114 54 0 4 117 11 124 3.87e-38 135
Msa0736870 MtrunA17_Chr4g0055981 55.556 117 52 0 9 125 52 168 6.97e-38 134
Msa0736870 MtrunA17_Chr1g0154031 44.512 164 82 3 12 172 76 233 7.28e-38 139
Msa0736870 MtrunA17_Chr2g0293911 53.043 115 54 0 8 122 20 134 1.91e-37 136
Msa0736870 MtrunA17_Chr2g0294811 67.045 88 29 0 1 88 1 88 1.91e-37 130
Msa0736870 MtrunA17_Chr4g0030881 55.455 110 42 1 13 115 8 117 2.46e-37 134
Msa0736870 MtrunA17_Chr8g0343831 57.944 107 45 0 12 118 8 114 2.76e-37 134
Msa0736870 MtrunA17_Chr4g0068921 53.043 115 54 0 8 122 20 134 3.65e-37 132
Msa0736870 MtrunA17_Chr2g0322521 57.798 109 46 0 9 117 26 134 7.96e-37 136
Msa0736870 MtrunA17_Chr4g0042611 67.045 88 29 0 1 88 1 88 3.28e-36 125
Msa0736870 MtrunA17_Chr7g0240821 35.714 224 126 4 16 238 5 211 1.37e-35 129
Msa0736870 MtrunA17_Chr8g0342461 61.111 90 34 1 1 89 1 90 8.79e-34 121
Msa0736870 MtrunA17_Chr5g0434931 54.717 106 48 0 11 116 34 139 9.36e-34 125
Msa0736870 MtrunA17_Chr8g0342511 60.920 87 34 0 1 87 1 87 1.11e-33 119
Msa0736870 MtrunA17_Chr5g0434911 52.727 110 52 0 7 116 16 125 1.15e-33 125
Msa0736870 MtrunA17_Chr8g0342471 61.111 90 34 1 1 89 1 90 2.14e-33 120
Msa0736870 MtrunA17_Chr5g0440781 44.286 140 74 3 13 149 13 151 3.73e-33 121
Msa0736870 MtrunA17_Chr8g0342531 59.551 89 36 0 1 89 1 89 4.49e-33 120
Msa0736870 MtrunA17_Chr7g0220341 54.128 109 48 1 10 116 23 131 6.87e-33 122
Msa0736870 MtrunA17_Chr5g0440761 44.286 140 74 3 13 149 13 151 1.57e-32 121
Msa0736870 MtrunA17_Chr5g0441141 44.286 140 74 3 13 149 13 151 1.72e-32 122
Msa0736870 MtrunA17_Chr5g0434831 54.717 106 48 0 11 116 6 111 3.57e-32 118
Msa0736870 MtrunA17_Chr7g0228991 53.774 106 49 0 11 116 28 133 2.12e-31 119
Msa0736870 MtrunA17_Chr1g0192411 49.091 110 56 0 8 117 8 117 3.40e-31 121
Msa0736870 MtrunA17_Chr8g0360111 53.922 102 47 0 11 112 24 125 7.79e-31 117
Msa0736870 MtrunA17_Chr5g0434841 52.830 106 50 0 11 116 19 124 1.74e-30 117
Msa0736870 MtrunA17_Chr5g0395221 59.524 84 34 0 5 88 5 88 1.75e-30 110
Msa0736870 MtrunA17_Chr3g0099141 55.172 87 39 0 8 94 36 122 2.04e-30 112
Msa0736870 MtrunA17_Chr2g0323321 57.609 92 38 1 1 92 1 91 2.64e-30 111
Msa0736870 MtrunA17_Chr3g0093811 54.545 88 40 0 43 130 13 100 2.68e-29 113
Msa0736870 MtrunA17_Chr5g0429661 51.429 105 48 2 12 115 120 222 1.27e-28 113
Msa0736870 MtrunA17_Chr5g0441131 48.276 116 58 2 10 124 7 121 2.14e-28 108
Msa0736870 MtrunA17_Chr8g0334881 48.148 108 55 1 8 114 6 113 2.94e-28 111
Msa0736870 MtrunA17_Chr4g0013361 49.038 104 52 1 12 114 10 113 3.77e-28 110
Msa0736870 MtrunA17_Chr3g0133601 47.222 108 54 2 14 120 37 142 2.06e-26 104
Msa0736870 MtrunA17_Chr3g0117511 44.144 111 59 2 9 118 178 286 1.22e-25 106
Msa0736870 MtrunA17_Chr6g0480581 39.456 147 80 4 14 155 4 146 1.93e-25 102
Msa0736870 MtrunA17_Chr6g0454921 39.286 140 77 3 14 152 15 147 2.87e-25 100
Msa0736870 MtrunA17_Chr4g0058991 45.045 111 58 2 9 118 204 312 4.13e-25 105
Msa0736870 MtrunA17_Chr4g0008551 42.623 122 63 3 14 134 38 153 4.31e-25 103
Msa0736870 MtrunA17_Chr4g0053431 47.170 106 47 2 14 115 5 105 7.99e-25 101
Msa0736870 MtrunA17_Chr5g0401731 43.333 120 65 2 14 132 15 132 1.95e-24 101
Msa0736870 MtrunA17_Chr7g0238631 49.057 106 51 2 12 116 111 214 2.00e-24 103
Msa0736870 MtrunA17_Chr7g0238631 33.019 106 69 2 14 118 61 165 5.38e-11 63.5
Msa0736870 MtrunA17_Chr3g0139671 44.340 106 56 2 12 116 83 186 9.18e-23 99.4
Msa0736870 MtrunA17_Chr6g0453751 50.000 92 37 2 11 93 19 110 1.53e-22 91.3
Msa0736870 MtrunA17_Chr7g0229101 57.746 71 30 0 43 113 3 73 4.82e-22 92.4
Msa0736870 MtrunA17_Chr7g0228531 44.762 105 56 2 14 118 220 322 1.70e-21 94.4
Msa0736870 MtrunA17_Chr1g0157731 44.340 106 56 2 12 116 89 192 2.60e-21 95.1
Msa0736870 MtrunA17_Chr6g0460661 41.739 115 63 3 14 127 16 127 3.85e-21 88.6
Msa0736870 MtrunA17_Chr7g0229131 52.703 74 35 0 43 116 3 76 3.91e-21 89.0
Msa0736870 MtrunA17_Chr5g0437321 43.396 106 54 3 8 112 16 116 5.90e-21 90.9
Msa0736870 MtrunA17_Chr5g0425591 49.412 85 42 1 10 93 7 91 6.42e-21 85.9
Msa0736870 MtrunA17_Chr7g0233061 43.925 107 50 4 14 117 180 279 2.60e-20 90.5
Msa0736870 MtrunA17_Chr5g0434901 56.061 66 29 0 48 113 9 74 3.45e-20 84.7
Msa0736870 MtrunA17_Chr5g0417621 41.509 106 59 2 14 118 134 237 1.55e-19 89.0
Msa0736870 MtrunA17_Chr4g0042501 41.509 106 59 2 14 118 105 208 1.73e-19 88.6
Msa0736870 MtrunA17_Chr5g0397841 45.455 99 51 2 12 109 108 204 3.10e-18 85.1
Msa0736870 MtrunA17_Chr1g0177901 37.008 127 70 3 25 143 5 129 3.95e-18 81.6
Msa0736870 MtrunA17_Chr5g0395231 64.706 51 18 0 78 128 5 55 9.00e-18 81.3
Msa0736870 MtrunA17_Chr7g0228481 40.909 110 60 3 14 120 220 327 1.81e-17 82.8
Msa0736870 MtrunA17_Chr7g0228401 34.711 121 48 2 17 110 258 374 2.24e-17 82.8
Msa0736870 MtrunA17_Chr6g0460671 39.252 107 62 2 14 119 99 203 2.91e-17 81.6
Msa0736870 MtrunA17_Chr3g0125801 41.905 105 58 2 14 117 16 118 9.74e-17 79.3
Msa0736870 MtrunA17_Chr7g0238651 37.931 116 64 2 17 124 10 125 1.45e-16 79.7
Msa0736870 MtrunA17_Chr7g0254261 37.500 128 73 3 9 131 80 205 2.92e-16 78.6
Msa0736870 MtrunA17_Chr7g0247141 62.500 48 17 1 1 47 1 48 4.90e-16 71.6
Msa0736870 MtrunA17_Chr4g0042621 75.000 40 10 0 89 128 15 54 3.05e-14 72.4
Msa0736870 MtrunA17_Chr5g0416341 37.624 101 62 1 17 117 29 128 8.21e-13 68.9
Msa0736870 MtrunA17_Chr3g0145551 65.909 44 15 0 92 135 2 45 1.11e-12 63.2
Msa0736870 MtrunA17_Chr5g0434871 58.140 43 18 0 74 116 2 44 6.18e-12 60.5
Msa0736870 MtrunA17_Chr1g0193901 45.238 84 44 2 12 93 11 94 6.52e-12 61.6
Msa0736870 MtrunA17_Chr1g0193891 45.238 84 44 2 12 93 11 94 6.52e-12 61.6
Msa0736870 MtrunA17_Chr1g0193871 45.238 84 44 2 12 93 11 94 6.52e-12 61.6
Msa0736870 MtrunA17_Chr1g0193881 45.238 84 44 2 12 93 11 94 6.52e-12 61.6
Msa0736870 MtrunA17_Chr3g0104491 40.299 67 36 1 53 115 1 67 3.65e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0736870 AT1G66230.1 57.333 300 93 5 1 291 1 274 3.02e-103 304
Msa0736870 AT5G16600.1 46.196 368 116 5 1 327 1 327 5.35e-102 303
Msa0736870 AT4G22680.1 86.822 129 17 0 1 129 1 129 1.45e-81 248
Msa0736870 AT4G12350.1 86.047 129 18 0 1 129 1 129 9.57e-80 244
Msa0736870 AT5G14340.1 75.194 129 32 0 1 129 13 141 9.17e-71 221
Msa0736870 AT5G62320.1 72.180 133 30 1 2 127 3 135 5.88e-67 210
Msa0736870 AT3G02940.2 71.875 128 36 0 1 128 1 128 1.80e-66 211
Msa0736870 AT3G02940.1 71.875 128 36 0 1 128 1 128 3.98e-66 211
Msa0736870 AT3G02940.3 71.875 128 36 0 1 128 1 128 3.98e-66 211
Msa0736870 AT3G61250.1 57.738 168 64 1 1 168 1 161 6.28e-66 209
Msa0736870 AT5G15310.1 71.094 128 37 0 1 128 1 128 2.77e-65 209
Msa0736870 AT5G15310.2 71.094 128 37 0 1 128 1 128 3.35e-65 208
Msa0736870 AT5G15310.4 71.094 128 37 0 1 128 1 128 4.40e-65 206
Msa0736870 AT4G28110.1 69.531 128 39 0 1 128 1 128 1.01e-64 206
Msa0736870 AT5G16770.4 70.312 128 38 0 1 128 1 128 1.38e-64 207
Msa0736870 AT5G16770.3 70.312 128 38 0 1 128 1 128 1.38e-64 207
Msa0736870 AT3G01140.2 66.197 142 46 1 1 140 1 142 1.86e-64 207
Msa0736870 AT5G16770.1 70.312 128 38 0 1 128 1 128 3.76e-64 206
Msa0736870 AT5G16770.2 70.312 128 38 0 1 128 1 128 3.76e-64 206
Msa0736870 AT1G34670.1 70.312 128 38 0 1 128 1 128 1.76e-63 205
Msa0736870 AT5G65230.1 70.312 128 38 0 1 128 1 128 4.58e-63 202
Msa0736870 AT4G21440.1 52.406 187 79 1 1 177 1 187 5.42e-63 204
Msa0736870 AT5G10280.1 56.805 169 67 2 1 168 1 164 7.38e-63 203
Msa0736870 AT4G38620.1 48.341 211 98 3 1 211 1 200 9.15e-63 201
Msa0736870 AT4G05100.1 68.992 129 39 1 1 128 1 129 1.45e-61 199
Msa0736870 AT5G26660.1 68.217 129 41 0 1 129 1 129 1.75e-61 200
Msa0736870 AT3G01140.1 65.942 138 45 1 5 140 48 185 3.18e-61 200
Msa0736870 AT5G61420.2 62.411 141 53 0 1 141 1 141 5.29e-61 199
Msa0736870 AT4G17785.2 68.217 129 40 1 1 128 1 129 1.01e-60 198
Msa0736870 AT4G17785.1 68.217 129 40 1 1 128 1 129 1.39e-60 198
Msa0736870 AT1G57560.1 67.692 130 42 0 1 130 1 130 1.83e-60 196
Msa0736870 AT1G57560.2 67.692 130 42 0 1 130 1 130 3.18e-60 194
Msa0736870 AT1G18570.1 60.959 146 54 2 1 145 1 144 1.04e-59 195
Msa0736870 AT1G09540.1 67.692 130 42 0 1 130 1 130 2.52e-59 195
Msa0736870 AT4G09460.1 63.566 129 47 0 1 129 1 129 7.77e-59 189
Msa0736870 AT2G16720.1 61.029 136 53 0 1 136 1 136 9.31e-59 190
Msa0736870 AT5G07700.1 63.910 133 48 0 1 133 1 133 2.70e-58 191
Msa0736870 AT5G07700.2 63.910 133 48 0 1 133 1 133 2.70e-58 191
Msa0736870 AT4G01680.3 58.333 156 56 2 1 155 1 148 4.76e-58 187
Msa0736870 AT1G06180.1 71.552 116 33 0 1 116 1 116 6.16e-58 187
Msa0736870 AT5G07690.1 37.651 332 179 7 1 312 1 324 1.06e-57 189
Msa0736870 AT4G01680.1 58.333 156 56 2 1 155 1 148 1.58e-57 189
Msa0736870 AT3G13540.1 55.844 154 56 1 5 158 16 157 2.18e-57 186
Msa0736870 AT4G34990.1 63.566 129 47 0 1 129 1 129 3.88e-57 186
Msa0736870 AT1G74080.1 55.828 163 70 1 1 161 1 163 3.95e-57 188
Msa0736870 AT5G56110.1 63.846 130 47 0 1 130 1 130 7.85e-57 187
Msa0736870 AT1G22640.1 62.992 127 47 0 1 127 1 127 9.76e-57 184
Msa0736870 AT1G35515.1 50.867 173 73 2 1 173 1 161 1.32e-56 183
Msa0736870 AT5G54230.1 66.406 128 43 0 1 128 1 128 1.94e-56 186
Msa0736870 AT3G23250.1 57.823 147 50 1 1 135 1 147 5.25e-56 184
Msa0736870 AT2G31180.1 67.797 118 38 0 1 118 1 118 1.05e-55 182
Msa0736870 AT5G60890.1 58.741 143 56 1 1 143 1 140 2.52e-55 182
Msa0736870 AT3G47600.1 67.227 119 39 0 1 119 1 119 7.47e-55 182
Msa0736870 AT4G01680.2 54.167 168 56 3 1 155 1 160 4.28e-54 181
Msa0736870 AT5G49330.1 66.379 116 39 0 1 116 1 116 9.48e-54 179
Msa0736870 AT3G12720.1 40.873 252 123 5 1 230 12 259 2.17e-53 177
Msa0736870 AT1G16490.1 67.826 115 37 0 2 116 4 118 2.33e-53 176
Msa0736870 AT2G47460.1 67.241 116 38 0 1 116 1 116 7.28e-53 178
Msa0736870 AT5G62470.2 64.706 119 42 0 1 119 1 119 7.66e-53 177
Msa0736870 AT1G08810.1 63.934 122 44 0 1 122 1 122 1.30e-52 175
Msa0736870 AT3G28910.1 65.574 122 42 0 1 122 1 122 2.37e-52 175
Msa0736870 AT1G56160.1 67.826 115 37 0 2 116 4 118 3.54e-52 174
Msa0736870 AT3G62610.1 65.517 116 40 0 1 116 1 116 3.61e-52 176
Msa0736870 AT3G28470.1 62.308 130 49 0 1 130 1 130 6.56e-52 174
Msa0736870 AT1G79180.1 65.812 117 40 0 2 118 4 120 7.98e-52 173
Msa0736870 AT5G62470.1 64.706 119 41 1 1 119 1 118 2.32e-51 174
Msa0736870 AT1G74650.1 64.706 119 42 0 1 119 1 119 4.10e-51 172
Msa0736870 AT3G13890.2 53.165 158 72 1 1 158 1 156 7.11e-51 172
Msa0736870 AT1G63910.1 59.375 128 52 0 1 128 1 128 9.41e-51 172
Msa0736870 AT3G12820.1 65.517 116 40 0 3 118 5 120 2.13e-50 167
Msa0736870 AT1G74430.1 60.156 128 51 0 1 128 1 128 1.28e-49 167
Msa0736870 AT1G18710.1 57.364 129 55 0 1 129 1 129 4.92e-49 165
Msa0736870 AT3G13890.1 50.299 167 72 2 1 158 1 165 9.43e-48 164
Msa0736870 AT5G12870.1 67.593 108 35 0 12 119 18 125 3.07e-47 161
Msa0736870 AT3G08500.1 64.545 110 39 0 8 117 26 135 3.63e-45 157
Msa0736870 AT1G79180.2 51.333 150 40 1 2 118 4 153 5.09e-45 156
Msa0736870 AT3G01530.1 52.632 133 61 1 12 144 25 155 1.34e-44 152
Msa0736870 AT3G24310.1 64.486 107 38 0 11 117 17 123 1.70e-44 153
Msa0736870 AT3G49690.1 59.829 117 46 1 1 116 1 117 2.29e-44 154
Msa0736870 AT5G23000.1 58.974 117 47 1 1 116 1 117 2.38e-44 155
Msa0736870 AT4G13480.1 65.714 105 36 0 13 117 7 111 2.41e-44 152
Msa0736870 AT5G65790.1 58.974 117 47 1 1 116 1 117 3.63e-44 155
Msa0736870 AT5G57620.1 58.974 117 47 1 1 116 1 117 3.82e-44 154
Msa0736870 AT2G36890.1 54.135 133 59 2 1 132 1 132 7.32e-44 152
Msa0736870 AT2G36890.2 54.135 133 59 2 1 132 42 173 1.16e-43 153
Msa0736870 AT5G14750.1 39.806 206 104 5 13 217 17 203 4.72e-43 147
Msa0736870 AT4G37780.1 56.410 117 50 1 1 116 1 117 9.86e-43 150
Msa0736870 AT5G40350.1 59.633 109 44 0 12 120 17 125 2.51e-42 146
Msa0736870 AT3G27810.1 59.813 107 43 0 12 118 20 126 4.00e-42 146
Msa0736870 AT2G32460.2 57.265 117 49 1 11 127 5 120 4.55e-42 152
Msa0736870 AT2G32460.1 57.265 117 49 1 11 127 17 132 5.26e-42 152
Msa0736870 AT5G06100.1 56.364 110 48 0 8 117 28 137 9.87e-42 150
Msa0736870 AT1G68320.1 56.757 111 48 0 12 122 19 129 1.51e-41 146
Msa0736870 AT5G52260.1 57.600 125 47 2 13 131 13 137 2.52e-41 145
Msa0736870 AT3G06490.1 57.391 115 49 0 8 122 15 129 3.01e-41 146
Msa0736870 AT5G55020.1 59.633 109 44 0 10 118 24 132 4.21e-41 150
Msa0736870 AT5G06100.5 56.364 110 48 0 8 117 28 137 4.53e-41 150
Msa0736870 AT5G06100.2 56.364 110 48 0 8 117 28 137 4.53e-41 150
Msa0736870 AT5G06100.3 56.364 110 48 0 8 117 28 137 4.53e-41 150
Msa0736870 AT5G06100.4 56.364 110 48 0 8 117 28 137 4.53e-41 150
Msa0736870 AT3G30210.1 46.012 163 85 2 11 172 26 186 1.01e-40 144
Msa0736870 AT5G26660.2 74.118 85 22 0 45 129 14 98 1.06e-40 145
Msa0736870 AT1G25340.1 52.101 119 57 0 13 131 19 137 1.45e-40 144
Msa0736870 AT4G25560.1 60.377 106 42 0 13 118 11 116 2.07e-40 143
Msa0736870 AT3G11440.2 56.604 106 46 0 12 117 41 146 2.29e-40 147
Msa0736870 AT1G48000.1 53.982 113 52 0 10 122 30 142 7.15e-40 140
Msa0736870 AT3G11440.3 56.604 106 46 0 12 117 41 146 8.10e-40 147
Msa0736870 AT3G11440.4 56.604 106 46 0 12 117 41 146 8.10e-40 147
Msa0736870 AT3G11440.1 56.604 106 46 0 12 117 41 146 8.10e-40 147
Msa0736870 AT5G40330.1 36.620 213 121 4 13 224 13 212 1.02e-39 139
Msa0736870 AT3G46130.1 57.391 115 47 1 11 123 8 122 1.09e-39 140
Msa0736870 AT5G59780.3 59.434 106 43 0 12 117 8 113 1.41e-39 139
Msa0736870 AT5G35550.1 59.813 107 43 0 12 118 14 120 2.66e-39 139
Msa0736870 AT2G47190.1 54.054 111 51 0 12 122 20 130 4.15e-39 139
Msa0736870 AT4G26930.1 48.889 135 65 3 10 144 17 147 2.01e-38 140
Msa0736870 AT2G26960.1 57.522 113 47 1 9 121 17 128 2.50e-38 141
Msa0736870 AT3G27920.1 55.769 104 46 0 13 116 15 118 1.60e-37 134
Msa0736870 AT3G53200.1 56.731 104 45 0 12 115 9 112 1.22e-36 132
Msa0736870 AT3G48920.1 54.808 104 47 0 13 116 19 122 1.25e-36 132
Msa0736870 AT1G25340.2 49.580 119 55 1 13 131 19 132 2.61e-36 132
Msa0736870 AT5G52600.1 48.819 127 56 1 12 129 12 138 3.20e-36 130
Msa0736870 AT5G49620.1 51.304 115 56 0 8 122 22 136 4.49e-36 132
Msa0736870 AT1G25340.3 49.580 119 55 1 13 131 19 132 4.94e-36 132
Msa0736870 AT3G47600.2 49.650 143 52 4 24 153 22 157 1.54e-34 129
Msa0736870 AT1G66370.1 54.783 115 48 1 1 115 1 111 6.10e-33 122
Msa0736870 AT5G49620.2 45.736 129 56 1 8 122 22 150 1.79e-32 123
Msa0736870 AT5G14750.3 38.172 186 90 6 38 217 3 169 3.93e-32 118
Msa0736870 AT1G56650.1 53.435 131 52 2 11 133 7 136 7.74e-32 119
Msa0736870 AT1G66380.1 58.095 105 44 0 11 115 7 111 5.19e-31 114
Msa0736870 AT1G66390.1 43.671 158 67 1 11 146 7 164 6.34e-31 117
Msa0736870 AT5G35550.2 63.750 80 29 0 39 118 44 123 1.02e-29 114
Msa0736870 AT3G12820.2 69.444 72 22 0 47 118 1 72 1.88e-29 112
Msa0736870 AT3G60460.1 50.962 104 50 1 12 114 11 114 2.03e-29 114
Msa0736870 AT3G46130.3 63.415 82 28 1 44 123 9 90 2.12e-29 112
Msa0736870 AT3G27810.2 64.865 74 26 0 45 118 4 77 2.27e-29 111
Msa0736870 AT2G26950.1 47.788 113 58 1 9 121 13 124 4.37e-29 115
Msa0736870 AT5G59780.2 67.123 73 24 0 45 117 20 92 5.36e-29 111
Msa0736870 AT5G40350.2 64.474 76 27 0 45 120 5 80 5.55e-29 110
Msa0736870 AT3G46130.4 64.198 81 27 1 45 123 20 100 5.58e-29 112
Msa0736870 AT1G18960.1 45.299 117 61 2 14 130 10 123 1.64e-28 112
Msa0736870 AT3G53200.2 67.606 71 23 0 45 115 9 79 5.58e-28 108
Msa0736870 AT5G58850.1 49.074 108 52 2 12 118 103 208 1.13e-27 112
Msa0736870 AT5G11050.1 47.573 103 51 2 14 115 105 205 2.42e-27 111
Msa0736870 AT4G18770.1 47.748 111 55 2 9 118 212 320 5.60e-27 110
Msa0736870 AT1G22640.3 66.667 69 23 0 59 127 2 70 3.74e-26 103
Msa0736870 AT1G71030.2 46.729 107 50 2 51 157 5 104 3.76e-25 100
Msa0736870 AT1G71030.1 46.729 107 50 2 51 157 19 118 6.68e-25 100
Msa0736870 AT3G27785.1 42.963 135 67 4 9 140 184 311 6.93e-25 104
Msa0736870 AT5G02320.3 47.170 106 53 2 12 116 65 168 2.48e-24 103
Msa0736870 AT5G02320.1 47.170 106 53 2 12 116 125 228 2.67e-24 103
Msa0736870 AT5G02320.2 47.170 106 53 2 12 116 125 228 2.67e-24 103
Msa0736870 AT2G39880.1 49.057 106 45 2 14 115 50 150 2.98e-24 102
Msa0736870 AT3G55730.1 42.177 147 67 5 14 148 56 196 7.15e-24 101
Msa0736870 AT3G09370.2 46.667 105 53 2 12 115 133 235 1.21e-23 101
Msa0736870 AT3G09370.1 46.667 105 53 2 12 115 128 230 1.28e-23 101
Msa0736870 AT3G09370.3 46.667 105 53 2 12 115 141 243 1.80e-23 101
Msa0736870 AT3G09230.1 45.794 107 49 2 14 116 55 156 2.80e-23 99.4
Msa0736870 AT5G67300.1 45.631 103 53 2 14 115 6 106 3.28e-23 97.8
Msa0736870 AT3G50060.1 45.631 103 53 2 14 115 6 106 5.51e-23 97.4
Msa0736870 AT5G40360.1 40.741 108 62 2 12 119 156 261 1.81e-22 96.7
Msa0736870 AT5G14750.4 36.250 160 82 5 59 217 2 142 2.57e-22 91.3
Msa0736870 AT5G14750.2 36.250 160 82 5 59 217 2 142 2.57e-22 91.3
Msa0736870 AT4G37260.1 45.631 103 53 2 14 115 13 113 3.40e-22 95.5
Msa0736870 AT5G11510.3 44.340 106 56 2 12 116 79 182 3.76e-22 97.8
Msa0736870 AT5G11510.1 44.340 106 56 2 12 116 79 182 3.76e-22 97.8
Msa0736870 AT5G11510.4 44.340 106 56 2 12 116 79 182 3.76e-22 97.8
Msa0736870 AT5G11510.5 44.340 106 56 2 12 116 79 182 6.05e-22 97.1
Msa0736870 AT5G11510.2 44.340 106 56 2 12 116 79 182 6.19e-22 97.1
Msa0736870 AT1G66380.3 57.143 77 33 0 39 115 2 78 1.20e-21 88.6
Msa0736870 AT4G32730.5 43.396 106 57 2 12 116 85 188 2.05e-21 95.5
Msa0736870 AT4G32730.4 43.396 106 57 2 12 116 85 188 2.05e-21 95.5
Msa0736870 AT4G32730.3 43.396 106 57 2 12 116 85 188 2.05e-21 95.5
Msa0736870 AT4G32730.2 43.396 106 57 2 12 116 85 188 2.05e-21 95.5
Msa0736870 AT4G32730.1 43.396 106 57 2 12 116 85 188 2.20e-21 95.5
Msa0736870 AT2G23290.1 48.077 104 49 4 14 115 13 113 3.30e-21 92.4
Msa0736870 AT1G69560.1 40.541 111 63 2 9 118 102 210 3.74e-21 92.8
Msa0736870 AT2G25230.1 41.176 119 65 3 9 124 21 137 4.00e-21 90.9
Msa0736870 AT1G69560.2 40.541 111 63 2 9 118 118 226 4.63e-21 92.8
Msa0736870 AT5G61420.1 65.574 61 21 0 81 141 2 62 1.78e-20 90.1
Msa0736870 AT3G23250.2 49.438 89 33 1 59 135 2 90 2.53e-20 88.6
Msa0736870 AT1G17950.1 43.396 106 57 2 14 118 5 108 4.46e-20 88.2
Msa0736870 AT1G26780.2 41.667 108 60 2 12 118 96 201 1.18e-19 89.0
Msa0736870 AT1G26780.1 41.667 108 60 2 12 118 96 201 1.29e-19 87.4
Msa0736870 AT1G73410.1 43.396 106 57 2 14 118 6 109 1.64e-18 83.6
Msa0736870 AT1G73410.2 43.396 106 57 2 14 118 6 109 5.09e-18 81.6
Msa0736870 AT3G29020.1 36.792 106 64 2 14 118 65 168 1.12e-17 81.3
Msa0736870 AT3G29020.2 36.792 106 64 2 14 118 67 170 1.21e-17 82.4
Msa0736870 AT4G00540.2 40.179 112 61 3 12 119 101 210 2.32e-17 82.8
Msa0736870 AT5G40430.1 35.714 112 70 1 9 120 49 158 3.27e-17 80.5
Msa0736870 AT4G00540.1 40.179 112 61 3 12 119 99 208 3.34e-17 82.4
Msa0736870 AT4G28110.2 75.610 41 10 0 88 128 4 44 3.63e-17 79.0
Msa0736870 AT5G15310.3 80.488 41 8 0 88 128 9 49 5.95e-17 79.3
Msa0736870 AT1G66380.2 52.381 84 40 0 11 94 7 90 7.34e-17 75.9
Msa0736870 AT5G14340.2 78.571 42 9 0 88 129 10 51 7.48e-17 77.8
Msa0736870 AT5G17800.1 37.500 104 64 1 14 117 93 195 1.64e-16 79.3
Msa0736870 AT4G33450.1 35.897 117 67 3 3 118 13 122 1.70e-16 78.2
Msa0736870 AT5G59780.1 61.224 49 19 0 70 118 1 49 3.77e-15 72.8
Msa0736870 AT3G46130.2 63.462 52 17 1 74 123 5 56 4.11e-15 73.2
Msa0736870 AT2G37630.1 38.614 101 60 1 17 115 7 107 6.09e-15 75.1
Msa0736870 AT3G28910.2 60.377 53 19 1 77 129 1 51 1.17e-13 70.1
Msa0736870 AT2G02820.3 33.793 145 91 3 17 161 33 172 2.18e-13 70.5
Msa0736870 AT5G39700.1 33.036 112 74 1 13 124 55 165 3.05e-13 67.8
Msa0736870 AT2G02820.1 33.793 145 91 3 17 161 33 172 3.84e-13 70.1
Msa0736870 AT1G22640.2 72.500 40 11 0 88 127 16 55 4.00e-13 67.4
Msa0736870 AT1G74650.3 69.767 43 13 0 77 119 1 43 4.15e-13 68.6
Msa0736870 AT2G02820.2 33.793 145 91 3 17 161 33 172 4.21e-13 70.1
Msa0736870 AT4G25560.2 56.000 50 22 0 69 118 1 50 4.23e-13 68.2
Msa0736870 AT1G74430.2 49.153 59 30 0 70 128 1 59 4.32e-13 67.8
Msa0736870 AT1G14350.2 37.624 101 62 1 17 117 28 127 6.38e-13 69.7
Msa0736870 AT1G14350.1 37.624 101 62 1 17 117 28 127 6.38e-13 69.7

Find 70 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGGAGACCTGCCAATTT+AGG 0.179748 5_1:-53531326 None:intergenic
TTTCTCTTTGATTTCAATTA+TGG 0.194553 5_1:-53533336 None:intergenic
ATTTGATACAATGGAGTTAA+TGG 0.202479 5_1:+53533382 Msa0736870:CDS
TAACTCCATTGTATCAAATA+AGG 0.211281 5_1:-53533378 None:intergenic
GTTGTTGTTTAGGTAGATTT+TGG 0.211426 5_1:-53533181 None:intergenic
TCTTCCTTGTTATTATTATT+AGG 0.250376 5_1:-53533545 None:intergenic
ATGAAGATCTTCAAGGAAAT+TGG 0.251000 5_1:-53533504 None:intergenic
ATCAGAATATGAAGAGAAAA+TGG 0.260581 5_1:+53531849 Msa0736870:CDS
TAAGATTGCTTCTCATTTAC+CGG 0.298461 5_1:+53533037 Msa0736870:CDS
TAAGAGGAGCATCAAGTTCT+TGG 0.314041 5_1:-53533673 None:intergenic
TTATTAGGCCATTCAAAATC+AGG 0.317311 5_1:-53533530 None:intergenic
ATAACAACAATATGGCCTTT+TGG 0.321530 5_1:+53533573 Msa0736870:CDS
GGTGACTCAAAAGAAGTCTT+TGG 0.330165 5_1:-53533311 None:intergenic
ATCAATTTCATCCTTACTAA+TGG 0.334411 5_1:+53531281 Msa0736870:CDS
TTAGACACTATAATCTCATT+AGG 0.357457 5_1:-53533440 None:intergenic
AAAGGAGACCTGCCAATTTA+GGG 0.368352 5_1:-53531325 None:intergenic
CTGGAGAGCTGTCCCTAAAT+TGG 0.368996 5_1:+53531313 Msa0736870:CDS
TTACTAATGGTCAATGTTGC+TGG 0.374011 5_1:+53531294 Msa0736870:CDS
ATCTCATTAGGTTCTATCAT+TGG 0.375201 5_1:-53533428 None:intergenic
GGTTGGTGTAGTTGTTGTTT+AGG 0.382965 5_1:-53533191 None:intergenic
AAAAGTCCTCTCTTTAAATC+TGG 0.383763 5_1:-53531826 None:intergenic
GGCCATGGATTTAGAATCTT+GGG 0.394640 5_1:+53533712 Msa0736870:CDS
AGAATGCAATAACAACAATA+TGG 0.412740 5_1:+53533565 Msa0736870:CDS
TTCATGCTCAACTTGGGAAC+AGG 0.415682 5_1:+53531881 Msa0736870:CDS
TTGTGAATAGAGAGAGTTAA+GGG 0.416471 5_1:-53531146 None:intergenic
AACTCCATTGTATCAAATAA+GGG 0.417577 5_1:-53533377 None:intergenic
AAACCACTAGCACTCTCTAA+TGG 0.418195 5_1:+53533146 Msa0736870:CDS
TGGCCATGGATTTAGAATCT+TGG 0.423773 5_1:+53533711 Msa0736870:CDS
CTGTCTTCCTCTGCGGTCCA+TGG 0.442065 5_1:-53531251 None:intergenic
GCTAGTGGTTTGTGTGTGAT+AGG 0.449945 5_1:-53533134 None:intergenic
ATTGATCTTCATGCTCAACT+TGG 0.457491 5_1:+53531874 Msa0736870:CDS
TTAAACATGCAGGGCTACTA+AGG 0.460776 5_1:+53531761 Msa0736870:intron
AACTCTCTCTATTCACAACT+TGG 0.461988 5_1:+53531151 Msa0736870:five_prime_UTR
GATGACAATGATGTTAATAA+TGG 0.462436 5_1:+53533641 Msa0736870:CDS
ATTTCATTATCCGTTCTTCC+CGG 0.474711 5_1:-53533056 None:intergenic
CATGGACCGCAGAGGAAGAC+AGG 0.482495 5_1:+53531252 Msa0736870:CDS
TGTCAATTGTCAAAGGTTGT+TGG 0.484587 5_1:-53533235 None:intergenic
TCTTTGATTTCAATTATGGT+TGG 0.487313 5_1:-53533332 None:intergenic
AGCAACATTGACCATTAGTA+AGG 0.496175 5_1:-53531292 None:intergenic
TATACACATAATGATAGCTT+AGG 0.501883 5_1:-53531103 None:intergenic
AATAAAGTCATCATCCCAAA+AGG 0.505829 5_1:-53533588 None:intergenic
CAGGGAGATGAAGATCTTCA+AGG 0.511219 5_1:-53533511 None:intergenic
CCAACCATTAGAAAAGGAAC+AGG 0.512623 5_1:+53533208 Msa0736870:CDS
ACTACACCAACCATTAGAAA+AGG 0.512895 5_1:+53533202 Msa0736870:CDS
ATTCTTGAGTAGTTGCTAAG+AGG 0.513656 5_1:-53533689 None:intergenic
GATACAATGGAGTTAATGGA+TGG 0.515455 5_1:+53533386 Msa0736870:CDS
TATTAGGCCATTCAAAATCA+GGG 0.525270 5_1:-53533529 None:intergenic
CAACCTTGTTGTGACAAAGT+AGG 0.529067 5_1:+53531215 Msa0736870:CDS
TTCTCATTTACCGGGAAGAA+CGG 0.532372 5_1:+53533046 Msa0736870:CDS
TGATGAAGAAGTGGATGAAG+AGG 0.532773 5_1:-53533465 None:intergenic
AACACCCTTATTTGATACAA+TGG 0.533111 5_1:+53533373 Msa0736870:CDS
GTTGTGAATAGAGAGAGTTA+AGG 0.541062 5_1:-53531147 None:intergenic
CAACTACTCAAGAATGGCCA+TGG 0.542456 5_1:+53533697 Msa0736870:CDS
TTGATCTTCATGCTCAACTT+GGG 0.546382 5_1:+53531875 Msa0736870:CDS
TGCCCAAGATTCTAAATCCA+TGG 0.550589 5_1:-53533714 None:intergenic
AGAGCTGTCCCTAAATTGGC+AGG 0.553725 5_1:+53531317 Msa0736870:CDS
CTTCCATTAGAGAGTGCTAG+TGG 0.558285 5_1:-53533149 None:intergenic
TCTTAGCAACTACTCAAGAA+TGG 0.559850 5_1:+53533691 Msa0736870:CDS
TTGAGGCCAGATTTAAAGAG+AGG 0.565291 5_1:+53531820 Msa0736870:CDS
AAGATTGCTTCTCATTTACC+GGG 0.583628 5_1:+53533038 Msa0736870:CDS
TGGTCAATGTCAATTGTCAA+AGG 0.584719 5_1:-53533242 None:intergenic
AATTGAGGAGCATAATAAAG+AGG 0.587245 5_1:+53533280 Msa0736870:CDS
AGAGAGTTAAGGGAGTTGAG+AGG 0.599787 5_1:-53531136 None:intergenic
TGATGAATATGATGAAGAAG+TGG 0.612083 5_1:-53533474 None:intergenic
AATCCTACTTTGTCACAACA+AGG 0.616257 5_1:-53531218 None:intergenic
TTAGATGGACAAATTACTTG+AGG 0.624742 5_1:+53531803 Msa0736870:CDS
CATGCAGGGCTACTAAGGTG+TGG 0.649256 5_1:+53531766 Msa0736870:intron
GAGCTTCCTGTCTTCCTCTG+CGG 0.660503 5_1:-53531258 None:intergenic
ATGGCCTAATAATAATAACA+AGG 0.688928 5_1:+53533541 Msa0736870:CDS
AAAAGGGCCATGGACCGCAG+AGG 0.709559 5_1:+53531244 Msa0736870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTATTTTAAATATAAAGAA+AGG - chr5_1:53532481-53532500 None:intergenic 10.0%
!! AAGTAATTAGTAAAATATTA+GGG - chr5_1:53532992-53533011 None:intergenic 10.0%
!! AAAGTAATTAGTAAAATATT+AGG - chr5_1:53532993-53533012 None:intergenic 10.0%
!! ATAATGAAATAAAAAATCAT+TGG + chr5_1:53533069-53533088 Msa0736870:CDS 10.0%
!!! TGTTTTGAAAAAAGAATAAT+GGG + chr5_1:53531188-53531207 Msa0736870:exon 15.0%
!!! TTAATCATTGTTTTAATTTG+TGG + chr5_1:53531448-53531467 Msa0736870:intron 15.0%
!! TCATAGATTACAAAAAATTA+CGG + chr5_1:53531471-53531490 Msa0736870:intron 15.0%
!!! TTCAAAAATATTTTGCATTA+TGG + chr5_1:53531625-53531644 Msa0736870:intron 15.0%
!!! ATTCATTGAAGAAATTATTT+TGG - chr5_1:53531715-53531734 None:intergenic 15.0%
!! CTTTAAATTCTAATCATAAA+TGG - chr5_1:53532248-53532267 None:intergenic 15.0%
!!! ATATTATGATGAAATCTTTT+AGG + chr5_1:53532449-53532468 Msa0736870:intron 15.0%
!! ATAATTTGAATAAAGTTATG+TGG + chr5_1:53532505-53532524 Msa0736870:intron 15.0%
!! TATTATCTATATAAAAGGAT+AGG + chr5_1:53532536-53532555 Msa0736870:intron 15.0%
!! ATTATCTATATAAAAGGATA+GGG + chr5_1:53532537-53532556 Msa0736870:intron 15.0%
!! ACAAAAAATAATGTAACTAT+TGG - chr5_1:53532954-53532973 None:intergenic 15.0%
!!! GTGTTTTGAAAAAAGAATAA+TGG + chr5_1:53531187-53531206 Msa0736870:exon 20.0%
!! TGTATAATTCAAATGCAATT+TGG + chr5_1:53531581-53531600 Msa0736870:intron 20.0%
!!! ATATTTTGCATTATGGTTAA+TGG + chr5_1:53531632-53531651 Msa0736870:intron 20.0%
!!! TATTTTGCATTATGGTTAAT+GGG + chr5_1:53531633-53531652 Msa0736870:intron 20.0%
!! AATTAAACATATGTAGAACT+GGG - chr5_1:53531932-53531951 None:intergenic 20.0%
!! AAATTAAACATATGTAGAAC+TGG - chr5_1:53531933-53531952 None:intergenic 20.0%
!! TGATTAATCATTAGTAAGAA+AGG - chr5_1:53531958-53531977 None:intergenic 20.0%
!! TAAACTAATTACAACTTGAA+GGG - chr5_1:53532107-53532126 None:intergenic 20.0%
!! ATAAACTAATTACAACTTGA+AGG - chr5_1:53532108-53532127 None:intergenic 20.0%
!!! CGTATGAAAATTTTATACTA+TGG + chr5_1:53532174-53532193 Msa0736870:intron 20.0%
!!! TTTTTTCTTTCTTTTGTAGA+TGG + chr5_1:53533012-53533031 Msa0736870:intron 20.0%
!!! CAATTTTTGTTTCAATTTTG+TGG - chr5_1:53533265-53533284 None:intergenic 20.0%
!! CAAAATTGAAACAAAAATTG+AGG + chr5_1:53533265-53533284 Msa0736870:CDS 20.0%
!!! TTTCTCTTTGATTTCAATTA+TGG - chr5_1:53533339-53533358 None:intergenic 20.0%
!!! TCTTCCTTGTTATTATTATT+AGG - chr5_1:53533548-53533567 None:intergenic 20.0%
! TATACACATAATGATAGCTT+AGG - chr5_1:53531106-53531125 None:intergenic 25.0%
! ACAAAGTAGGATTGAAAAAA+GGG + chr5_1:53531228-53531247 Msa0736870:CDS 25.0%
! ATCAATTTCATCCTTACTAA+TGG + chr5_1:53531281-53531300 Msa0736870:CDS 25.0%
! CAAAAAATTACGGTTAAATG+CGG + chr5_1:53531481-53531500 Msa0736870:intron 25.0%
!! ATGGTTAATGGGATTAATTT+TGG + chr5_1:53531644-53531663 Msa0736870:intron 25.0%
! ATCAGAATATGAAGAGAAAA+TGG + chr5_1:53531849-53531868 Msa0736870:CDS 25.0%
! TAACTGTGTTACATTTCAAT+TGG - chr5_1:53532759-53532778 None:intergenic 25.0%
! TGAAATGTAACACAGTTATT+TGG + chr5_1:53532761-53532780 Msa0736870:intron 25.0%
! AAAGAAAAAGCTCAAGAAAA+TGG + chr5_1:53533103-53533122 Msa0736870:CDS 25.0%
! AAGAAAAAGCTCAAGAAAAT+GGG + chr5_1:53533104-53533123 Msa0736870:CDS 25.0%
!!! TTGTTGTTTAGGTAGATTTT+GGG - chr5_1:53533183-53533202 None:intergenic 25.0%
!! TCTTTGATTTCAATTATGGT+TGG - chr5_1:53533335-53533354 None:intergenic 25.0%
! AACTCCATTGTATCAAATAA+GGG - chr5_1:53533380-53533399 None:intergenic 25.0%
! TAACTCCATTGTATCAAATA+AGG - chr5_1:53533381-53533400 None:intergenic 25.0%
! ATTTGATACAATGGAGTTAA+TGG + chr5_1:53533382-53533401 Msa0736870:CDS 25.0%
! TTAGACACTATAATCTCATT+AGG - chr5_1:53533443-53533462 None:intergenic 25.0%
! ATGGCCTAATAATAATAACA+AGG + chr5_1:53533541-53533560 Msa0736870:CDS 25.0%
! AGAATGCAATAACAACAATA+TGG + chr5_1:53533565-53533584 Msa0736870:CDS 25.0%
! GATGACAATGATGTTAATAA+TGG + chr5_1:53533641-53533660 Msa0736870:CDS 25.0%
TTGTGAATAGAGAGAGTTAA+GGG - chr5_1:53531149-53531168 None:intergenic 30.0%
GACAAAGTAGGATTGAAAAA+AGG + chr5_1:53531227-53531246 Msa0736870:CDS 30.0%
AAAAAAGCAAGAGCAATGAA+AGG - chr5_1:53531346-53531365 None:intergenic 30.0%
TCAATTGTGATTAAACATGC+AGG + chr5_1:53531751-53531770 Msa0736870:intron 30.0%
CAATTGTGATTAAACATGCA+GGG + chr5_1:53531752-53531771 Msa0736870:intron 30.0%
GAAAAAGTTGTAGACTTAGA+TGG + chr5_1:53531788-53531807 Msa0736870:CDS 30.0%
TTAGATGGACAAATTACTTG+AGG + chr5_1:53531803-53531822 Msa0736870:CDS 30.0%
AAAAGTCCTCTCTTTAAATC+TGG - chr5_1:53531829-53531848 None:intergenic 30.0%
TGAAACACTAATGACAACAA+AGG + chr5_1:53532044-53532063 Msa0736870:intron 30.0%
GATTAGAAGTAAAAAGAACG+TGG + chr5_1:53532137-53532156 Msa0736870:intron 30.0%
!! TTTCTTAACTTGCATGACAT+TGG + chr5_1:53532350-53532369 Msa0736870:intron 30.0%
! GATGAAACTTTTCTTTTCAG+TGG + chr5_1:53532375-53532394 Msa0736870:intron 30.0%
TCAAATAACTCAACTTGAGA+CGG - chr5_1:53532802-53532821 None:intergenic 30.0%
TGAAACAAATGCAATACACT+CGG + chr5_1:53532819-53532838 Msa0736870:intron 30.0%
TAAGATTGCTTCTCATTTAC+CGG + chr5_1:53533037-53533056 Msa0736870:CDS 30.0%
!!! GTTGTTGTTTAGGTAGATTT+TGG - chr5_1:53533184-53533203 None:intergenic 30.0%
! TTTTCCTGTTCCTTTTCTAA+TGG - chr5_1:53533215-53533234 None:intergenic 30.0%
! AATTGAGGAGCATAATAAAG+AGG + chr5_1:53533280-53533299 Msa0736870:CDS 30.0%
! AACACCCTTATTTGATACAA+TGG + chr5_1:53533373-53533392 Msa0736870:CDS 30.0%
ATCTCATTAGGTTCTATCAT+TGG - chr5_1:53533431-53533450 None:intergenic 30.0%
TGATGAATATGATGAAGAAG+TGG - chr5_1:53533477-53533496 None:intergenic 30.0%
ATGAAGATCTTCAAGGAAAT+TGG - chr5_1:53533507-53533526 None:intergenic 30.0%
TATTAGGCCATTCAAAATCA+GGG - chr5_1:53533532-53533551 None:intergenic 30.0%
TTATTAGGCCATTCAAAATC+AGG - chr5_1:53533533-53533552 None:intergenic 30.0%
! ATAACAACAATATGGCCTTT+TGG + chr5_1:53533573-53533592 Msa0736870:CDS 30.0%
! TAACAACAATATGGCCTTTT+GGG + chr5_1:53533574-53533593 Msa0736870:CDS 30.0%
AATAAAGTCATCATCCCAAA+AGG - chr5_1:53533591-53533610 None:intergenic 30.0%
GTTGTGAATAGAGAGAGTTA+AGG - chr5_1:53531150-53531169 None:intergenic 35.0%
AACTCTCTCTATTCACAACT+TGG + chr5_1:53531151-53531170 Msa0736870:five_prime_UTR 35.0%
AATCCTACTTTGTCACAACA+AGG - chr5_1:53531221-53531240 None:intergenic 35.0%
AGCAACATTGACCATTAGTA+AGG - chr5_1:53531295-53531314 None:intergenic 35.0%
TTACTAATGGTCAATGTTGC+TGG + chr5_1:53531294-53531313 Msa0736870:CDS 35.0%
! GACGAGATTTTTGATGTTTC+TGG - chr5_1:53531526-53531545 None:intergenic 35.0%
ATTGATCTTCATGCTCAACT+TGG + chr5_1:53531874-53531893 Msa0736870:CDS 35.0%
TTGATCTTCATGCTCAACTT+GGG + chr5_1:53531875-53531894 Msa0736870:CDS 35.0%
ATATGTAGAACTGGGTGAAA+TGG - chr5_1:53531924-53531943 None:intergenic 35.0%
TAATTACAACTTGAAGGGCA+TGG - chr5_1:53532102-53532121 None:intergenic 35.0%
! TTTTCATACGCCTCTTTTCA+TGG - chr5_1:53532164-53532183 None:intergenic 35.0%
CATTGAAACTCACACAAAAG+AGG - chr5_1:53532683-53532702 None:intergenic 35.0%
AAGATTGCTTCTCATTTACC+GGG + chr5_1:53533038-53533057 Msa0736870:CDS 35.0%
ATTTCATTATCCGTTCTTCC+CGG - chr5_1:53533059-53533078 None:intergenic 35.0%
ACTACACCAACCATTAGAAA+AGG + chr5_1:53533202-53533221 Msa0736870:CDS 35.0%
TGTCAATTGTCAAAGGTTGT+TGG - chr5_1:53533238-53533257 None:intergenic 35.0%
TGGTCAATGTCAATTGTCAA+AGG - chr5_1:53533245-53533264 None:intergenic 35.0%
GATACAATGGAGTTAATGGA+TGG + chr5_1:53533386-53533405 Msa0736870:CDS 35.0%
! TTCATCTCCCTGATTTTGAA+TGG + chr5_1:53533522-53533541 Msa0736870:CDS 35.0%
ATTCTTGAGTAGTTGCTAAG+AGG - chr5_1:53533692-53533711 None:intergenic 35.0%
TCTTAGCAACTACTCAAGAA+TGG + chr5_1:53533691-53533710 Msa0736870:CDS 35.0%
! CAACCTTGTTGTGACAAAGT+AGG + chr5_1:53531215-53531234 Msa0736870:CDS 40.0%
TAGGATTGAAAAAAGGGCCA+TGG + chr5_1:53531234-53531253 Msa0736870:CDS 40.0%
AAAGGAGACCTGCCAATTTA+GGG - chr5_1:53531328-53531347 None:intergenic 40.0%
TTAAACATGCAGGGCTACTA+AGG + chr5_1:53531761-53531780 Msa0736870:intron 40.0%
TTGAGGCCAGATTTAAAGAG+AGG + chr5_1:53531820-53531839 Msa0736870:CDS 40.0%
AGTGATGCAAGAATTACGCA+TGG + chr5_1:53532421-53532440 Msa0736870:intron 40.0%
GTGATGCAAGAATTACGCAT+GGG + chr5_1:53532422-53532441 Msa0736870:intron 40.0%
GTTATGCTAGACGTTGTAAC+CGG + chr5_1:53532637-53532656 Msa0736870:intron 40.0%
TTATGCTAGACGTTGTAACC+GGG + chr5_1:53532638-53532657 Msa0736870:intron 40.0%
GAAACTCACACAAAAGAGGT+TGG - chr5_1:53532679-53532698 None:intergenic 40.0%
!!! ACTCGGATGTTTTAGAGCTT+TGG + chr5_1:53532836-53532855 Msa0736870:intron 40.0%
TTCTCATTTACCGGGAAGAA+CGG + chr5_1:53533046-53533065 Msa0736870:CDS 40.0%
AAACCACTAGCACTCTCTAA+TGG + chr5_1:53533146-53533165 Msa0736870:CDS 40.0%
!! GGTTGGTGTAGTTGTTGTTT+AGG - chr5_1:53533194-53533213 None:intergenic 40.0%
! CCTGTTCCTTTTCTAATGGT+TGG - chr5_1:53533211-53533230 None:intergenic 40.0%
CCAACCATTAGAAAAGGAAC+AGG + chr5_1:53533208-53533227 Msa0736870:CDS 40.0%
GGTGACTCAAAAGAAGTCTT+TGG - chr5_1:53533314-53533333 None:intergenic 40.0%
TGATGAAGAAGTGGATGAAG+AGG - chr5_1:53533468-53533487 None:intergenic 40.0%
!! TAAGAGGAGCATCAAGTTCT+TGG - chr5_1:53533676-53533695 None:intergenic 40.0%
! TGGCCATGGATTTAGAATCT+TGG + chr5_1:53533711-53533730 Msa0736870:CDS 40.0%
! GGCCATGGATTTAGAATCTT+GGG + chr5_1:53533712-53533731 Msa0736870:CDS 40.0%
TGCCCAAGATTCTAAATCCA+TGG - chr5_1:53533717-53533736 None:intergenic 40.0%
AGAGAGTTAAGGGAGTTGAG+AGG - chr5_1:53531139-53531158 None:intergenic 45.0%
GAAAGGAGACCTGCCAATTT+AGG - chr5_1:53531329-53531348 None:intergenic 45.0%
TTCATGCTCAACTTGGGAAC+AGG + chr5_1:53531881-53531900 Msa0736870:CDS 45.0%
GTAGAACTGGGTGAAATGGT+TGG - chr5_1:53531920-53531939 None:intergenic 45.0%
AGAACGTGGTCCATGAAAAG+AGG + chr5_1:53532151-53532170 Msa0736870:intron 45.0%
ACACAAAAGAGGTTGGACTG+GGG - chr5_1:53532672-53532691 None:intergenic 45.0%
CACACAAAAGAGGTTGGACT+GGG - chr5_1:53532673-53532692 None:intergenic 45.0%
TCACACAAAAGAGGTTGGAC+TGG - chr5_1:53532674-53532693 None:intergenic 45.0%
! GCTAGTGGTTTGTGTGTGAT+AGG - chr5_1:53533137-53533156 None:intergenic 45.0%
!! CTTCCATTAGAGAGTGCTAG+TGG - chr5_1:53533152-53533171 None:intergenic 45.0%
CAGGGAGATGAAGATCTTCA+AGG - chr5_1:53533514-53533533 None:intergenic 45.0%
CAACTACTCAAGAATGGCCA+TGG + chr5_1:53533697-53533716 Msa0736870:CDS 45.0%
!! TATTATATTATCTATATAAA+AGG + chr5_1:53532531-53532550 Msa0736870:intron 5.0%
CTGGAGAGCTGTCCCTAAAT+TGG + chr5_1:53531313-53531332 Msa0736870:CDS 50.0%
AGAGCTGTCCCTAAATTGGC+AGG + chr5_1:53531317-53531336 Msa0736870:CDS 50.0%
!! TGGGTGAAATGGTTGGTGAG+GGG - chr5_1:53531913-53531932 None:intergenic 50.0%
!! CTGGGTGAAATGGTTGGTGA+GGG - chr5_1:53531914-53531933 None:intergenic 50.0%
! ACTGGGTGAAATGGTTGGTG+AGG - chr5_1:53531915-53531934 None:intergenic 50.0%
GAGCTTCCTGTCTTCCTCTG+CGG - chr5_1:53531261-53531280 None:intergenic 55.0%
CATGCAGGGCTACTAAGGTG+TGG + chr5_1:53531766-53531785 Msa0736870:intron 55.0%
! TGGACTGGGGTTCAAACACC+CGG - chr5_1:53532659-53532678 None:intergenic 55.0%
AAAAGGGCCATGGACCGCAG+AGG + chr5_1:53531244-53531263 Msa0736870:CDS 60.0%
CTGTCTTCCTCTGCGGTCCA+TGG - chr5_1:53531254-53531273 None:intergenic 60.0%
CATGGACCGCAGAGGAAGAC+AGG + chr5_1:53531252-53531271 Msa0736870:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 53531101 53533751 53531101 ID=Msa0736870;Name=Msa0736870
chr5_1 mRNA 53531101 53533751 53531101 ID=Msa0736870-mRNA-1;Parent=Msa0736870;Name=Msa0736870-mRNA-1;_AED=0.04;_eAED=0.04;_QI=105|1|0.66|1|1|1|3|0|327
chr5_1 exon 53531101 53531338 53531101 ID=Msa0736870-mRNA-1:exon:15078;Parent=Msa0736870-mRNA-1
chr5_1 exon 53531773 53531902 53531773 ID=Msa0736870-mRNA-1:exon:15079;Parent=Msa0736870-mRNA-1
chr5_1 exon 53533031 53533751 53533031 ID=Msa0736870-mRNA-1:exon:15080;Parent=Msa0736870-mRNA-1
chr5_1 five_prime_UTR 53531101 53531205 53531101 ID=Msa0736870-mRNA-1:five_prime_utr;Parent=Msa0736870-mRNA-1
chr5_1 CDS 53531206 53531338 53531206 ID=Msa0736870-mRNA-1:cds;Parent=Msa0736870-mRNA-1
chr5_1 CDS 53531773 53531902 53531773 ID=Msa0736870-mRNA-1:cds;Parent=Msa0736870-mRNA-1
chr5_1 CDS 53533031 53533751 53533031 ID=Msa0736870-mRNA-1:cds;Parent=Msa0736870-mRNA-1
Gene Sequence

>Msa0736870

ATGGGAAGACAACCTTGTTGTGACAAAGTAGGATTGAAAAAAGGGCCATGGACCGCAGAGGAAGACAGGAAGCTCATCAATTTCATCCTTACTAATGGTCAATGTTGCTGGAGAGCTGTCCCTAAATTGGCAGGGCTACTAAGGTGTGGAAAAAGTTGTAGACTTAGATGGACAAATTACTTGAGGCCAGATTTAAAGAGAGGACTTTTATCAGAATATGAAGAGAAAATGGTGATTGATCTTCATGCTCAACTTGGGAACAGATGGTCTAAGATTGCTTCTCATTTACCGGGAAGAACGGATAATGAAATAAAAAATCATTGGAATACTCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTATCACACACAAACCACTAGCACTCTCTAATGGAAGTGATCAAACCCAAAATCTACCTAAACAACAACTACACCAACCATTAGAAAAGGAACAGGAAAACCAACAACCTTTGACAATTGACATTGACCACAAAATTGAAACAAAAATTGAGGAGCATAATAAAGAGGTTGAGAAGCCAAAGACTTCTTTTGAGTCACCAACCATAATTGAAATCAAAGAGAAAGATGAAATTACAATAACACCCTTATTTGATACAATGGAGTTAATGGATGGATTTTGTATAGATGAAGTTCCAATGATAGAACCTAATGAGATTATAGTGTCTAATTCCTCTTCATCCACTTCTTCATCATATTCATCAAATTCAACCAATTTCCTTGAAGATCTTCATCTCCCTGATTTTGAATGGCCTAATAATAATAACAAGGAAGAATGCAATAACAACAATATGGCCTTTTGGGATGATGACTTTATTAGTAGCTTGAATTTGCTGCTTAATGATGATGATGACAATGATGTTAATAATGGTGAAAGAAACCAAGAACTTGATGCTCCTCTTAGCAACTACTCAAGAATGGCCATGGATTTAGAATCTTGGGCATATGAATTGTTTTGA

Protein sequence

>Msa0736870

MGRQPCCDKVGLKKGPWTAEEDRKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPITHKPLALSNGSDQTQNLPKQQLHQPLEKEQENQQPLTIDIDHKIETKIEEHNKEVEKPKTSFESPTIIEIKEKDEITITPLFDTMELMDGFCIDEVPMIEPNEIIVSNSSSSTSSSYSSNSTNFLEDLHLPDFEWPNNNNKEECNNNNMAFWDDDFISSLNLLLNDDDDNDVNNGERNQELDAPLSNYSRMAMDLESWAYELF*