AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0106620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106620 MtrunA17_Chr1g0162861 92.325 1316 65 11 51 1356 1 1290 0.0 2213
Msa0106620 MtrunA17_Chr4g0074931 27.096 513 312 14 748 1242 42 510 4.97e-26 115
Msa0106620 MtrunA17_Chr2g0317411 24.834 451 275 10 777 1212 82 483 2.91e-22 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106620 AT1G20970.1 43.028 667 293 19 737 1343 713 1352 6.54e-110 379
Msa0106620 AT4G27500.2 27.484 473 283 14 778 1232 79 509 9.15e-18 89.0
Msa0106620 AT4G27500.1 26.809 470 290 12 778 1232 79 509 4.61e-17 87.0

Find 285 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTTGTCTGGCTTATTTC+AGG 0.180645 1_3:+16115216 None:intergenic
TCTGATACAATTGTTGAAAA+TGG 0.255980 1_3:-16118356 Msa0106620:CDS
TTCAGCTTCAATTGAAATTT+CGG 0.262228 1_3:+16117680 None:intergenic
CTCGTAGCTGTTTCCTTTGA+AGG 0.262409 1_3:+16118002 None:intergenic
GCTTCTGCGACCAATTATTA+TGG 0.267077 1_3:-16114049 Msa0106620:three_prime_UTR
TAGTTATTGCTTCTGCCTTC+AGG 0.274660 1_3:+16116594 None:intergenic
TAATTTATTACCATAATAAT+TGG 0.277581 1_3:+16114039 None:intergenic
TTTGTTCTCACAGGTTCATT+AGG 0.278894 1_3:+16115102 None:intergenic
TCCTTTGTATTAACAGTAAC+AGG 0.287802 1_3:+16115270 None:intergenic
AGCTGAAAGCCTGGCTAAAA+AGG 0.291793 1_3:-16117331 Msa0106620:intron
GGAAGAGGAGCGGATCTTAA+AGG 0.297459 1_3:-16115076 Msa0106620:CDS
GAAACTCCAGTTGATGTTAA+TGG 0.302515 1_3:-16118470 Msa0106620:CDS
GTGGGTTCTAATTGCAGTTC+TGG 0.310673 1_3:-16114374 Msa0106620:CDS
TCACCTTCATCAGCAGGTTC+TGG 0.311289 1_3:+16118170 None:intergenic
CGAAATTCGGGATGTTGAAT+TGG 0.312755 1_3:-16118537 Msa0106620:CDS
CATCAGTGGCAGATGCTTCT+TGG 0.313490 1_3:+16117535 None:intergenic
TGAAGTTTCAATTGATGTTT+CGG 0.315237 1_3:+16117710 None:intergenic
CGAAATTCGTGATGTTGAAT+TGG 0.315573 1_3:-16118912 Msa0106620:CDS
TCCACCGCCGTTTCTGTTGA+AGG 0.323975 1_3:+16117969 None:intergenic
CCAACAAAGGGCTCTCTATA+AGG 0.325558 1_3:-16114938 Msa0106620:CDS
CACTAGTTCCGTTGAAGGTT+CGG 0.329971 1_3:+16117902 None:intergenic
TTCAGTTGAAGCTGAAAATT+CGG 0.334131 1_3:-16117739 Msa0106620:CDS
TTTGCTTCAATAGTTTGATT+TGG 0.337754 1_3:+16116859 None:intergenic
TGCATTGTTTAATCTATTCA+TGG 0.338109 1_3:+16117077 None:intergenic
AGATCTTCATTTCAAAGCTT+TGG 0.338307 1_3:-16114310 Msa0106620:CDS
CGCTCCACTAGTTCCGTTGA+AGG 0.338346 1_3:+16117897 None:intergenic
TTCAGCTTCAACTGAAGTTT+CGG 0.341890 1_3:+16117746 None:intergenic
CGCCGTTTCAGTTGAAGGTT+CGG 0.344295 1_3:+16117938 None:intergenic
GGCCATTCTATTGGTTGGTC+CGG 0.347271 1_3:-16117449 Msa0106620:CDS
AATCATTAGGTGTTTGCCTT+GGG 0.348423 1_3:-16114241 Msa0106620:three_prime_UTR
CCTTATAGAGAGCCCTTTGT+TGG 0.350120 1_3:+16114938 None:intergenic
GTCTAATATTATTGCAAAAC+AGG 0.352653 1_3:-16116823 Msa0106620:CDS
TGAATCCATCTCTTGTCGTT+TGG 0.352770 1_3:+16117110 None:intergenic
TCCACCGCCGTTTCAGTTGA+AGG 0.359470 1_3:+16117933 None:intergenic
TCTGATTCGCCGACATCAAC+AGG 0.369872 1_3:+16118209 None:intergenic
TGCCTCTTGACGAGTGTTAT+CGG 0.370866 1_3:+16116502 None:intergenic
ACATATAGAAGCAATTCTTT+TGG 0.372823 1_3:-16114185 Msa0106620:three_prime_UTR
GGTAAGGAAATTTCTGTTAA+CGG 0.377145 1_3:-16119487 Msa0106620:CDS
ATGAAGGGAAATAAGTTAGT+TGG 0.378549 1_3:+16119792 None:intergenic
TACAATTGTTGAAAATGGTT+TGG 0.379234 1_3:-16118351 Msa0106620:CDS
TAATCAAGTGGATGAGGTTA+TGG 0.384901 1_3:-16116540 Msa0106620:CDS
GCCGACGTTGTCGGTGTTAT+CGG 0.385683 1_3:+16119579 None:intergenic
TGTTGAAAATGGTTTGGATA+AGG 0.386706 1_3:-16118345 Msa0106620:CDS
CAAACTCCATTAACATCAAC+TGG 0.387744 1_3:+16118464 None:intergenic
TGATAATCGCGATGTTGAAT+TGG 0.391001 1_3:-16118789 Msa0106620:CDS
GTTGAGTCTGTCTCTGATAA+TGG 0.391317 1_3:-16118317 Msa0106620:CDS
AGCTGAGAAGGAAAGTGAAT+TGG 0.395250 1_3:-16118861 Msa0106620:CDS
TTGGAAAGTGTAGCTGTTCC+TGG 0.396775 1_3:-16118842 Msa0106620:CDS
AAGATTTGTGAAAACGGTTC+GGG 0.399591 1_3:-16119298 Msa0106620:CDS
TGAAAATCGTGATGTTCAAT+TGG 0.402656 1_3:-16118657 Msa0106620:CDS
GGAGAAAAGAGCAAAGAAGA+AGG 0.403456 1_3:-16114635 Msa0106620:CDS
ATCAGTGGCAGATGCTTCTT+GGG 0.406247 1_3:+16117536 None:intergenic
AATTCACTTTCCTTCTCAGC+TGG 0.407305 1_3:+16118863 None:intergenic
TCTTCCTCCTTTGTTCTCAC+AGG 0.410719 1_3:+16115093 None:intergenic
TCATGAAAGCGAAAATCTTT+CGG 0.415961 1_3:-16118945 Msa0106620:CDS
AGCAGATCGAGTTTCTCGTT+GGG 0.417105 1_3:-16115151 Msa0106620:CDS
TGGTGAGGAGGCCATTCTAT+TGG 0.417655 1_3:-16117458 Msa0106620:CDS
TTCAGTGAAGGCAGGAATCA+TGG 0.421582 1_3:+16115365 None:intergenic
GTCTGTCTCTGATAATGGTT+TGG 0.425968 1_3:-16118312 Msa0106620:CDS
ATATATGTAATAAATATGTA+AGG 0.426155 1_3:+16114208 None:intergenic
CAGTCTCCTCACTGTACTCC+TGG 0.426440 1_3:+16115431 None:intergenic
CTTATAGAGAGCCCTTTGTT+GGG 0.427096 1_3:+16114939 None:intergenic
CTTGTCAGAGTTTCAGAGCT+AGG 0.427351 1_3:+16114547 None:intergenic
GTCTGTCTCTGATAATGGTT+TGG 0.429116 1_3:-16118273 Msa0106620:CDS
CAATCATTAGGTGTTTGCCT+TGG 0.433346 1_3:-16114242 Msa0106620:three_prime_UTR
GAAGATTTGTGAAAACGGTT+CGG 0.436024 1_3:-16119299 Msa0106620:CDS
GTCGAGTCTGTCTCTGATAA+TGG 0.436999 1_3:-16118278 Msa0106620:CDS
TCTCTTCTCTTCTTCTCTGT+CGG 0.439442 1_3:-16119853 Msa0106620:CDS
GATAATGCTGTCAAAGTTGA+AGG 0.440799 1_3:-16118080 Msa0106620:CDS
CTTCACCAGGATTAAGCGTT+CGG 0.443035 1_3:+16115394 None:intergenic
TGAAGGGAAATAAGTTAGTT+GGG 0.443366 1_3:+16119793 None:intergenic
TTCGATGCAAAGCAATCATT+AGG 0.446729 1_3:-16114254 Msa0106620:three_prime_UTR
GCGGATCTTAAAGGCTGAAC+AGG 0.447277 1_3:-16115067 Msa0106620:CDS
TTCAGCTTCAATAGAGGTCT+CGG 0.449069 1_3:+16117626 None:intergenic
AGGAGACTGCAAACTTTAGA+TGG 0.449667 1_3:-16115417 Msa0106620:CDS
TAAACAATGCAATTTCTGTC+GGG 0.451272 1_3:-16117065 Msa0106620:CDS
GCTTTCATGATCTTTAGATT+CGG 0.452133 1_3:+16118958 None:intergenic
TTCAGTTGAAGCTGAAACTT+CGG 0.454653 1_3:-16117655 Msa0106620:CDS
GGACAAGAGTGATCGTGAAT+TGG 0.455985 1_3:-16119095 Msa0106620:CDS
AGTTCAGAAAGGACTATTAC+CGG 0.459259 1_3:-16115461 Msa0106620:CDS
TTCGACGGCGCCGACGTTGT+CGG 0.460767 1_3:+16119570 None:intergenic
TGAAAACGGTGGAGAATTGA+AGG 0.465384 1_3:-16119233 Msa0106620:CDS
TGTACCACAGCCTTGGAAGC+AGG 0.465437 1_3:+16115243 None:intergenic
AAGCGCAATGACAGCGGAGG+AGG 0.466090 1_3:-16119629 Msa0106620:CDS
GCCATTCTATTGGTTGGTCC+GGG 0.466811 1_3:-16117448 Msa0106620:CDS
ATTAGGTTCCTTCTCTTCAT+CGG 0.467184 1_3:+16115119 None:intergenic
TGAGGAAGAAGAAGTGAAGG+TGG 0.471639 1_3:-16119173 Msa0106620:CDS
TGTCGTGGATGCACAGGACA+TGG 0.474717 1_3:-16117490 Msa0106620:CDS
GAGAAAAGAGCAAAGAAGAA+GGG 0.479788 1_3:-16114634 Msa0106620:CDS
GTATCTACATTAACATCAAC+CGG 0.484110 1_3:+16118416 None:intergenic
AAGAAGAAATATGAGGAAGA+AGG 0.489813 1_3:-16116563 Msa0106620:CDS
TCAAGTTACAGACTTTGAAA+AGG 0.489986 1_3:-16116475 Msa0106620:CDS
TCGTGAGGAAGAAGAAGTGA+AGG 0.490143 1_3:-16119176 Msa0106620:CDS
CACAGAGCATTGTAATGGTA+AGG 0.495770 1_3:-16119503 Msa0106620:CDS
CAAAGCTGAAGGAAATGAAA+AGG 0.496256 1_3:-16115023 Msa0106620:CDS
AAATGGTTTGGATAAGGTAC+CGG 0.496598 1_3:-16118339 Msa0106620:CDS
GGAGCGCTTATGTATTGATC+AGG 0.496628 1_3:-16115621 Msa0106620:intron
GATGGCCGAACGCTTAATCC+TGG 0.497200 1_3:-16115399 Msa0106620:CDS
TTAAACAATGCAATTTCTGT+CGG 0.499085 1_3:-16117066 Msa0106620:CDS
GAAGTTTGAGCTTCAACTGA+AGG 0.499445 1_3:+16117603 None:intergenic
CGAAATTCGAGCTGAAAGCC+TGG 0.501002 1_3:-16117340 Msa0106620:CDS
ACAAGAAGAGAGAGCTGCTA+GGG 0.501119 1_3:-16117145 Msa0106620:CDS
CTCTGATAATGGTTTGGCAG+AGG 0.502587 1_3:-16118267 Msa0106620:CDS
GGAAGAAGAAGTGAAGGTGG+AGG 0.505542 1_3:-16119170 Msa0106620:CDS
TCATTAGGTGTTTGCCTTGG+GGG 0.506788 1_3:-16114239 Msa0106620:three_prime_UTR
AGCTGAGCCTTCAACAGAAA+CGG 0.510854 1_3:-16117976 Msa0106620:CDS
AGAAGGTAATCAAGTGGATG+AGG 0.511050 1_3:-16116546 Msa0106620:CDS
CACCGATGTCGTGGATGCAC+AGG 0.512779 1_3:-16117496 Msa0106620:CDS
AACGGTTGATGTCGTTGAGC+GGG 0.518462 1_3:-16119326 Msa0106620:CDS
TTCACCTTCACCGCCTTCGA+CGG 0.520919 1_3:+16119555 None:intergenic
TACTCCACCTTTACCGTTAG+CGG 0.521641 1_3:+16119411 None:intergenic
TCAATGAGACTGCAAGAACT+AGG 0.522673 1_3:-16115668 Msa0106620:CDS
ACTATTACCGGTGCAATACC+AGG 0.523046 1_3:-16115449 Msa0106620:CDS
CAAATCCAAACGACAAGAGA+TGG 0.523125 1_3:-16117115 Msa0106620:CDS
AAAGGATGAACCTGCTTCCA+AGG 0.524649 1_3:-16115253 Msa0106620:CDS
TGCCGAAAAGGCCCAACAAA+GGG 0.525398 1_3:-16114950 Msa0106620:CDS
TAAGCTCTTTCAGTGAAGGC+AGG 0.525750 1_3:+16115357 None:intergenic
TAATGGTTTGGCAGAGGTTG+AGG 0.525866 1_3:-16118261 Msa0106620:CDS
ACCACGGTTGCGAATAGCCA+TGG 0.526287 1_3:+16114423 None:intergenic
TGTGAGAACAAAGGAGGAAG+AGG 0.526843 1_3:-16115091 Msa0106620:CDS
GGGAAATAAGTTAGTTGGGT+GGG 0.527047 1_3:+16119797 None:intergenic
GAGGAGGCCATTCTATTGGT+TGG 0.527307 1_3:-16117454 Msa0106620:CDS
GTAATAAATTATTGTGATTG+TGG 0.527555 1_3:-16114027 Msa0106620:three_prime_UTR
GAATTTGTGATTGTTGAAAA+CGG 0.528063 1_3:-16119247 Msa0106620:CDS
GGCGCCGTCGAAGGCGGTGA+AGG 0.530333 1_3:-16119559 Msa0106620:CDS
TAAATTATTGTGATTGTGGT+GGG 0.531904 1_3:-16114023 Msa0106620:three_prime_UTR
GTTGAATTCGTCTCTTACCA+CGG 0.532422 1_3:+16114407 None:intergenic
GAAGTTTCAGCTTCAACTGA+AGG 0.532522 1_3:+16117657 None:intergenic
TTAGAGGCAGAGTTTCATGC+TGG 0.534107 1_3:+16116904 None:intergenic
AGCAGCAAAGAAGAAATATG+AGG 0.534680 1_3:-16116570 Msa0106620:CDS
GGCTGAACAGGCGAGGAAGA+AGG 0.534987 1_3:-16115055 Msa0106620:CDS
TCTGCTGACTTCTTCTCTGA+AGG 0.536447 1_3:+16115168 None:intergenic
TAAAGGTGGAGTAGCGGTAG+AGG 0.536539 1_3:-16119401 Msa0106620:CDS
GGATGAAGTTGAACCTTCAA+AGG 0.536650 1_3:-16118015 Msa0106620:CDS
AGGAGCACAGGGGAAGAAAG+AGG 0.538909 1_3:-16115648 Msa0106620:CDS
TGAAGTTGAACCAGCTGAGA+AGG 0.539099 1_3:-16118873 Msa0106620:CDS
GACGAATTCAACCATGGATG+TGG 0.539438 1_3:-16114396 Msa0106620:CDS
AGCCGAACCTTCAACTGAAA+CGG 0.539734 1_3:-16117940 Msa0106620:CDS
TTCTACGGATGCGGTGGAGG+TGG 0.540207 1_3:-16119005 Msa0106620:CDS
ATCATGGGAGGCTCTTCACC+AGG 0.540568 1_3:+16115381 None:intergenic
ACCTTCAACTGAAACGGCGG+TGG 0.542771 1_3:-16117934 Msa0106620:CDS
TTGTGATAATGCAGATGAGA+AGG 0.542927 1_3:-16118444 Msa0106620:CDS
CAGCAGATCGAGTTTCTCGT+TGG 0.543874 1_3:-16115152 Msa0106620:CDS
GAATTGGAAAGTAAAGTTGA+TGG 0.544173 1_3:-16118896 Msa0106620:CDS
TGATTCTACGGATGCGGTGG+AGG 0.544593 1_3:-16119008 Msa0106620:CDS
AACTTCTCTATCAACAACAT+TGG 0.546136 1_3:+16117803 None:intergenic
ATTTCTGTTAACGGCAATGT+CGG 0.552571 1_3:-16119478 Msa0106620:CDS
TGAAACTCTGACAAGAACTC+TGG 0.552572 1_3:-16114539 Msa0106620:CDS
ACCCGGACCAACCAATAGAA+TGG 0.552856 1_3:+16117447 None:intergenic
ACTGCAAGAACTAGGAGCAC+AGG 0.554158 1_3:-16115660 Msa0106620:CDS
AAGCATTGAAGAGCAAACTA+AGG 0.554579 1_3:-16116772 Msa0106620:intron
GAAAAGGCAATTGCATGAGA+AGG 0.554771 1_3:-16116459 Msa0106620:intron
CTCTGATAATGGTTTGGAGA+AGG 0.557027 1_3:-16118306 Msa0106620:CDS
TTATCAGAGACAGACTCAAC+CGG 0.558273 1_3:+16118320 None:intergenic
TCAGTGAAGGCAGGAATCAT+GGG 0.559798 1_3:+16115366 None:intergenic
ATCATTAGGTGTTTGCCTTG+GGG 0.559846 1_3:-16114240 Msa0106620:three_prime_UTR
GAAAGCGAAAATCTTTCGGA+TGG 0.560139 1_3:-16118941 Msa0106620:CDS
GAGTGAAGCCGAACCTTCAA+CGG 0.561675 1_3:-16117910 Msa0106620:CDS
CTTGATTATACTCTTTACGA+AGG 0.561786 1_3:+16117184 None:intergenic
GAAGAGAAGATTTGTGAAAA+CGG 0.561949 1_3:-16119304 Msa0106620:CDS
GCAGATCGAGTTTCTCGTTG+GGG 0.561989 1_3:-16115150 Msa0106620:CDS
AAGATCACAGAGCATTGTAA+TGG 0.562627 1_3:-16119508 Msa0106620:CDS
TTTGTAAGCTCTTTCAGTGA+AGG 0.562971 1_3:+16115353 None:intergenic
AGCATCTGCCACTGATGCTG+TGG 0.563886 1_3:-16117529 Msa0106620:CDS
GCCTTCAACAGAAACGGCGG+TGG 0.564162 1_3:-16117970 Msa0106620:CDS
TGCTGATTCTACGGATGCGG+TGG 0.564790 1_3:-16119011 Msa0106620:CDS
ACATGGGCTCTGAGGTGGTG+AGG 0.566686 1_3:-16117473 Msa0106620:CDS
TTGCGATGTTGTTGCTGACG+TGG 0.568590 1_3:-16119116 Msa0106620:CDS
AGACATTAAAGAGGAGAGTG+AGG 0.569567 1_3:-16118114 Msa0106620:CDS
AAACAATGCAATTTCTGTCG+GGG 0.569837 1_3:-16117064 Msa0106620:CDS
GAAGCTGATTCACTCACTCC+AGG 0.570410 1_3:+16118824 None:intergenic
GAATTCAACCATGGATGTGG+TGG 0.570422 1_3:-16114393 Msa0106620:CDS
TTGATTATACTCTTTACGAA+GGG 0.572186 1_3:+16117185 None:intergenic
GTTGACGCCGCTAACGGTAA+AGG 0.572603 1_3:-16119418 Msa0106620:CDS
GGAAGAAGAAGCAAAGCTGA+AGG 0.572743 1_3:-16115034 Msa0106620:CDS
TGAAGAAGTTGCTGATTCTA+CGG 0.573748 1_3:-16119020 Msa0106620:CDS
GGAGGTGGTTGATTCTGATA+CGG 0.576314 1_3:-16118990 Msa0106620:CDS
TGAACCTGCTTCCAAGGCTG+TGG 0.577224 1_3:-16115247 Msa0106620:CDS
TTAACAGTAACAGGTTCTGT+TGG 0.578014 1_3:+16115279 None:intergenic
TGGGCTCTGAGGTGGTGAGG+AGG 0.578182 1_3:-16117470 Msa0106620:CDS
TAATGGTTTGGAGAAGGTAC+CGG 0.578454 1_3:-16118300 Msa0106620:CDS
TTCAGTTGAAACTGAGACTG+CGG 0.578726 1_3:-16117775 Msa0106620:CDS
GGACGAGTCCGATGAAGAGA+AGG 0.579016 1_3:-16115127 Msa0106620:CDS
ATAAATTATTGTGATTGTGG+TGG 0.579033 1_3:-16114024 Msa0106620:three_prime_UTR
TGCCGATAACACTCGTCAAG+AGG 0.579319 1_3:-16116504 Msa0106620:CDS
GCAGTCTCAGTTTCAACTGA+AGG 0.579813 1_3:+16117777 None:intergenic
CTGCAAGAACTAGGAGCACA+GGG 0.581459 1_3:-16115659 Msa0106620:CDS
GACAACGTCGGCGCCGTCGA+AGG 0.581779 1_3:-16119568 Msa0106620:CDS
TCAATTCACAAAACAAAGCA+AGG 0.582239 1_3:-16114458 Msa0106620:CDS
TTGTCATCATCATCGTATCT+CGG 0.583706 1_3:+16117423 None:intergenic
ACTTTGACAGCATTATCTGA+AGG 0.585040 1_3:+16118086 None:intergenic
GGAAATTGAGAAAGCTAAGG+AGG 0.585444 1_3:-16114995 Msa0106620:CDS
CATCATCGTATCTCGGAACC+CGG 0.585579 1_3:+16117430 None:intergenic
TGCAGATGAGAAGGAAACTC+CGG 0.585869 1_3:-16118435 Msa0106620:CDS
GAAGAATGACGAGTTCAGAA+AGG 0.589656 1_3:-16115472 Msa0106620:CDS
TGCATCTGCCACCGATGTCG+TGG 0.590159 1_3:-16117505 Msa0106620:CDS
TGAAGGTTCAGCTTCAATAG+AGG 0.590769 1_3:+16117620 None:intergenic
ACCTCAGACGTAACAACAGA+AGG 0.593177 1_3:+16118140 None:intergenic
ACAGGGGAAGAAAGAGGACG+TGG 0.593488 1_3:-16115642 Msa0106620:CDS
CGAACCTTCAACGGAACTAG+TGG 0.593666 1_3:-16117901 Msa0106620:CDS
CTGTACTCCTGGTATTGCAC+CGG 0.594714 1_3:+16115442 None:intergenic
GTTACCGTTGACGCCGCTAA+CGG 0.594903 1_3:-16119424 Msa0106620:CDS
GCTTTGAAATGAAGATCTCA+AGG 0.595326 1_3:+16114315 None:intergenic
TGAGGTGAGAGACATTAAAG+AGG 0.596413 1_3:-16118123 Msa0106620:CDS
ATCAGCAACTTCTTCAACAG+CGG 0.597246 1_3:+16119027 None:intergenic
CCACGGTTGCGAATAGCCAT+GGG 0.597835 1_3:+16114424 None:intergenic
ATTAGAACCCACCACATCCA+TGG 0.597877 1_3:+16114385 None:intergenic
GTCGTGGATGCACAGGACAT+GGG 0.598942 1_3:-16117489 Msa0106620:CDS
GAAGCTCAAACTTCAGCTGA+AGG 0.599070 1_3:-16117594 Msa0106620:CDS
TACAAGAAGAGAGAGCTGCT+AGG 0.599500 1_3:-16117146 Msa0106620:CDS
CTGTGCATCCACGACATCGG+TGG 0.599757 1_3:+16117497 None:intergenic
TGATGCTGAAGTGAGTGAAT+CGG 0.600354 1_3:-16118504 Msa0106620:CDS
TTCAGGAAGCGCAATGACAG+CGG 0.600797 1_3:-16119635 Msa0106620:CDS
AGTTGCTGATTCTACGGATG+CGG 0.604860 1_3:-16119014 Msa0106620:CDS
ACCTTCTGTTGTTACGTCTG+AGG 0.605683 1_3:-16118141 Msa0106620:CDS
TGAGGAAGAAGGTAATCAAG+TGG 0.607579 1_3:-16116552 Msa0106620:CDS
TTCTAACGGTGAAACGACAA+CGG 0.609310 1_3:-16119344 Msa0106620:CDS
TGAGGTGAGTGAATGCATCA+AGG 0.610932 1_3:-16118243 Msa0106620:CDS
TATATGTAATAAATATGTAA+GGG 0.611508 1_3:+16114209 None:intergenic
TACTCAAAATGATTTAGAGA+AGG 0.612379 1_3:-16118396 Msa0106620:CDS
GAATTGGAAGGTGTTGAGAA+CGG 0.614129 1_3:-16119079 Msa0106620:CDS
ATGCCGAAAAGGCCCAACAA+AGG 0.614179 1_3:-16114951 Msa0106620:CDS
ACATGCTCTTCAACAAGTAG+AGG 0.615781 1_3:-16117382 Msa0106620:CDS
TGCACAGGACATGGGCTCTG+AGG 0.616154 1_3:-16117481 Msa0106620:CDS
AGTTACTACTGAAGATGCTG+TGG 0.616914 1_3:-16114599 Msa0106620:CDS
ACCTGTTACTGTTAATACAA+AGG 0.617247 1_3:-16115271 Msa0106620:CDS
CAGATCGAGTTTCTCGTTGG+GGG 0.617393 1_3:-16115149 Msa0106620:CDS
GTTATTTCCCATATAAAACA+AGG 0.618146 1_3:+16114342 None:intergenic
TGTCGGGGATATAGATAGCA+AGG 0.619863 1_3:-16117049 Msa0106620:intron
GTCCTGTGCATCCACGACAT+CGG 0.620547 1_3:+16117494 None:intergenic
AGATGCATCCACAGCATCAG+TGG 0.621066 1_3:+16117521 None:intergenic
ACACCAGAACCTGCTGATGA+AGG 0.621455 1_3:-16118173 Msa0106620:CDS
TAGCAACGAATCTGAAGTGA+CGG 0.622394 1_3:-16119374 Msa0106620:CDS
AAGAGTGATCGTGAATTGGA+AGG 0.623827 1_3:-16119091 Msa0106620:CDS
AAATCTGCAACATCAACAGA+AGG 0.624188 1_3:+16117831 None:intergenic
AAGCTAAGGAGGCACTGCAA+AGG 0.626684 1_3:-16114984 Msa0106620:CDS
AGAGGAAATTGAGAAAGCTA+AGG 0.627172 1_3:-16114998 Msa0106620:CDS
AACGATCGGATCTGAAAGAA+CGG 0.627370 1_3:+16119444 None:intergenic
AACGTCGGCGCCGTCGAAGG+CGG 0.628326 1_3:-16119565 Msa0106620:CDS
GTGACGGTTATGAATTCTAA+CGG 0.628599 1_3:-16119358 Msa0106620:CDS
GTGAAGGTGGAGGATCAAAA+CGG 0.629161 1_3:-16119160 Msa0106620:CDS
TTTACCGTTAGCGGCGTCAA+CGG 0.629253 1_3:+16119420 None:intergenic
CCCATGGCTATTCGCAACCG+TGG 0.629628 1_3:-16114424 Msa0106620:CDS
GCGGCGTCAACGGTAACGAT+CGG 0.631102 1_3:+16119430 None:intergenic
CAACGGTTGATGTCGTTGAG+CGG 0.634074 1_3:-16119327 Msa0106620:CDS
GCTTAGAAGTAATCTCCTGA+AGG 0.634976 1_3:-16116609 Msa0106620:CDS
AGATCGAGTTTCTCGTTGGG+GGG 0.635906 1_3:-16115148 Msa0106620:CDS
AGGAAGCGCAATGACAGCGG+AGG 0.636017 1_3:-16119632 Msa0106620:CDS
TTTGTGATTGTTGAAAACGG+TGG 0.637026 1_3:-16119244 Msa0106620:CDS
GGTGGTTGATTCTGATACGG+TGG 0.638023 1_3:-16118987 Msa0106620:CDS
TCTTAAAGGCTGAACAGGCG+AGG 0.640573 1_3:-16115062 Msa0106620:CDS
GAACGGAGTTAAAGAGATCG+AGG 0.641304 1_3:-16119062 Msa0106620:CDS
AGAATTGAAGGAATGTGCGG+TGG 0.642858 1_3:-16119221 Msa0106620:CDS
AGGGAAATAAGTTAGTTGGG+TGG 0.646523 1_3:+16119796 None:intergenic
AATGTGATTCCTGTTGATGT+CGG 0.646932 1_3:-16118218 Msa0106620:CDS
ATTGTTTAATCTATTCATGG+TGG 0.647633 1_3:+16117080 None:intergenic
GAAGGAAATGAAAAGGCTAG+AGG 0.651290 1_3:-16115016 Msa0106620:CDS
TGTTGAGAATGAGATTCGTG+AGG 0.651739 1_3:-16119191 Msa0106620:CDS
CAAGGTAAAAGCTTTACCCA+TGG 0.652268 1_3:-16114440 Msa0106620:CDS
AAACTATTGAAGCAAAATCG+TGG 0.653029 1_3:-16116852 Msa0106620:CDS
AAGTGGATGAGGTTATGGCT+CGG 0.657227 1_3:-16116535 Msa0106620:CDS
AATTCAACCATGGATGTGGT+GGG 0.658178 1_3:-16114392 Msa0106620:CDS
GAACAAAGGAGGAAGAGGAG+CGG 0.661400 1_3:-16115086 Msa0106620:CDS
TGTATCAGAGACAGACTCAA+CGG 0.662344 1_3:+16118370 None:intergenic
TTATCAGAGACAGACTCGAC+CGG 0.663571 1_3:+16118281 None:intergenic
TGAACCTGTGAGAACAAAGG+AGG 0.664380 1_3:-16115097 Msa0106620:CDS
GACGCCGCTAACGGTAAAGG+TGG 0.666548 1_3:-16119415 Msa0106620:CDS
TAATGAACCTGTGAGAACAA+AGG 0.667584 1_3:-16115100 Msa0106620:CDS
TCCGATAACACCGACAACGT+CGG 0.672245 1_3:-16119580 Msa0106620:CDS
CGAACCTTCAACTGAAACGG+CGG 0.674110 1_3:-16117937 Msa0106620:CDS
GGATGTTGAATTGGAAACCG+TGG 0.674322 1_3:-16118528 Msa0106620:CDS
CGGAGTTAAAGAGATCGAGG+AGG 0.677412 1_3:-16119059 Msa0106620:CDS
ACTCACTTCAGCATCAACCA+CGG 0.682834 1_3:+16118511 None:intergenic
GTGAAGGCAGGAATCATGGG+AGG 0.683078 1_3:+16115369 None:intergenic
TCAGCTTGAGAAACCAGTTG+AGG 0.692737 1_3:-16114506 Msa0106620:CDS
GAACAATGTAGTGCATAGTG+AGG 0.698883 1_3:-16117859 Msa0106620:CDS
TAACGGTAAAGGTGGAGTAG+CGG 0.700879 1_3:-16119407 Msa0106620:CDS
ACAGGACATGGGCTCTGAGG+TGG 0.700930 1_3:-16117478 Msa0106620:CDS
GTAAGAGACGAATTCAACCA+TGG 0.703137 1_3:-16114402 Msa0106620:CDS
TTGATGTCGGCGAATCAGAG+AGG 0.714665 1_3:-16118205 Msa0106620:CDS
TGAGCCTTCAACAGAAACGG+CGG 0.719702 1_3:-16117973 Msa0106620:CDS
TTTCAGCTCGAATTTCGTCG+CGG 0.729931 1_3:+16117346 None:intergenic
GCAATACCAGGAGTACAGTG+AGG 0.739249 1_3:-16115437 Msa0106620:CDS
TGGAGAATTGAAGGAATGTG+CGG 0.744091 1_3:-16119224 Msa0106620:CDS
TGCAAGAACTAGGAGCACAG+GGG 0.777871 1_3:-16115658 Msa0106620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAGTTG+AGG + chr1_3:16117978-16117997 None:intergenic 10.0%
!! TTAAACTAAAATTCATTTAA+CGG - chr1_3:16119183-16119202 Msa0106620:CDS 10.0%
!! TATATGTAATAAATATGTAA+GGG + chr1_3:16119686-16119705 None:intergenic 10.0%
!! ATATATGTAATAAATATGTA+AGG + chr1_3:16119687-16119706 None:intergenic 10.0%
!! TAATTTATTACCATAATAAT+TGG + chr1_3:16119856-16119875 None:intergenic 10.0%
!! AAATCAAAGAAAATTGCTTA+CGG + chr1_3:16114156-16114175 None:intergenic 20.0%
!!! TAGAATGTTATTAGTTTGAT+TGG - chr1_3:16116605-16116624 Msa0106620:CDS 20.0%
!!! TTTGAATGATTAATTTGTTC+AGG - chr1_3:16116684-16116703 Msa0106620:intron 20.0%
!! TTAGTTAATACAAAAGATAC+GGG + chr1_3:16117199-16117218 None:intergenic 20.0%
!! GTTAGTTAATACAAAAGATA+CGG + chr1_3:16117200-16117219 None:intergenic 20.0%
!! AAAAAAGGAATGAAATAGAT+AGG + chr1_3:16117473-16117492 None:intergenic 20.0%
!!! AATCTATTCTTTGATTGTTT+TGG - chr1_3:16117560-16117579 Msa0106620:CDS 20.0%
!! TTAAATTCTTTAATCCACAA+AGG + chr1_3:16117846-16117865 None:intergenic 20.0%
!! GATTAAAGAATTTAATGCTT+AGG - chr1_3:16117851-16117870 Msa0106620:CDS 20.0%
!! CAGTATAAAAATAGTTATCA+TGG + chr1_3:16119143-16119162 None:intergenic 20.0%
!! TAGAAGCAAAAAAATTGTAA+AGG + chr1_3:16119735-16119754 None:intergenic 20.0%
!!! ATTTTTTTGCTTCTAGTTTT+TGG - chr1_3:16119740-16119759 Msa0106620:intron 20.0%
!! GTAATAAATTATTGTGATTG+TGG - chr1_3:16119865-16119884 Msa0106620:CDS 20.0%
! AAAAAAGATAGAGAGATGAA+GGG + chr1_3:16114118-16114137 None:intergenic 25.0%
! GAATTTGTGATTGTTGAAAA+CGG - chr1_3:16114645-16114664 Msa0106620:intron 25.0%
! TACTCAAAATGATTTAGAGA+AGG - chr1_3:16115496-16115515 Msa0106620:CDS 25.0%
! TCTGATACAATTGTTGAAAA+TGG - chr1_3:16115536-16115555 Msa0106620:intron 25.0%
! TACAATTGTTGAAAATGGTT+TGG - chr1_3:16115541-16115560 Msa0106620:intron 25.0%
! TGAAGTTTCAATTGATGTTT+CGG + chr1_3:16116185-16116204 None:intergenic 25.0%
! TTCAGCTTCAATTGAAATTT+CGG + chr1_3:16116215-16116234 None:intergenic 25.0%
! TTGATTATACTCTTTACGAA+GGG + chr1_3:16116710-16116729 None:intergenic 25.0%
! ATTGTTTAATCTATTCATGG+TGG + chr1_3:16116815-16116834 None:intergenic 25.0%
! TGCATTGTTTAATCTATTCA+TGG + chr1_3:16116818-16116837 None:intergenic 25.0%
! TTAAACAATGCAATTTCTGT+CGG - chr1_3:16116826-16116845 Msa0106620:CDS 25.0%
! CAAATTGTGATAAATATCTC+TGG + chr1_3:16116889-16116908 None:intergenic 25.0%
!! TTATTTTCAGATTCGAAACA+TGG - chr1_3:16116955-16116974 Msa0106620:intron 25.0%
!!! AATTGCTTTTCTTCTTTTAG+AGG + chr1_3:16117007-16117026 None:intergenic 25.0%
! TTTGCTTCAATAGTTTGATT+TGG + chr1_3:16117036-16117055 None:intergenic 25.0%
! GTCTAATATTATTGCAAAAC+AGG - chr1_3:16117069-16117088 Msa0106620:CDS 25.0%
! CATTATATTTCCCGAATTAA+TGG - chr1_3:16117164-16117183 Msa0106620:CDS 25.0%
! GTAGTTAATTCCATTAATTC+GGG + chr1_3:16117177-16117196 None:intergenic 25.0%
! GGTAGTTAATTCCATTAATT+CGG + chr1_3:16117178-16117197 None:intergenic 25.0%
!!! TACATGGTTTTAATTTCCTT+AGG + chr1_3:16117724-16117743 None:intergenic 25.0%
! AAAATATTATCTGCTGAACT+AGG - chr1_3:16118016-16118035 Msa0106620:CDS 25.0%
!! TGTACAGAGCAAATATTTTT+GGG - chr1_3:16118187-16118206 Msa0106620:CDS 25.0%
!! TACTCGTTTCAAGTATAAAA+AGG + chr1_3:16118301-16118320 None:intergenic 25.0%
! GGTCAATTATCACATTTAAT+GGG + chr1_3:16119122-16119141 None:intergenic 25.0%
! TGGTCAATTATCACATTTAA+TGG + chr1_3:16119123-16119142 None:intergenic 25.0%
!! GTTATTTCCCATATAAAACA+AGG + chr1_3:16119553-16119572 None:intergenic 25.0%
!! ACATATAGAAGCAATTCTTT+TGG - chr1_3:16119707-16119726 Msa0106620:intron 25.0%
! ATAAATTATTGTGATTGTGG+TGG - chr1_3:16119868-16119887 Msa0106620:CDS 25.0%
TGAAGGGAAATAAGTTAGTT+GGG + chr1_3:16114102-16114121 None:intergenic 30.0%
ATGAAGGGAAATAAGTTAGT+TGG + chr1_3:16114103-16114122 None:intergenic 30.0%
GAAAAAAGATAGAGAGATGA+AGG + chr1_3:16114119-16114138 None:intergenic 30.0%
!!! CAATTTCTTGAGCTTTTTTC+AGG - chr1_3:16114240-16114259 Msa0106620:three_prime_UTR 30.0%
GGTAAGGAAATTTCTGTTAA+CGG - chr1_3:16114405-16114424 Msa0106620:CDS 30.0%
GAAGAGAAGATTTGTGAAAA+CGG - chr1_3:16114588-16114607 Msa0106620:CDS 30.0%
GCTTTCATGATCTTTAGATT+CGG + chr1_3:16114937-16114956 None:intergenic 30.0%
TCATGAAAGCGAAAATCTTT+CGG - chr1_3:16114947-16114966 Msa0106620:CDS 30.0%
GAATTGGAAAGTAAAGTTGA+TGG - chr1_3:16114996-16115015 Msa0106620:CDS 30.0%
TGAAAATCGTGATGTTCAAT+TGG - chr1_3:16115235-16115254 Msa0106620:CDS 30.0%
! AGCTGAGAAAAACGAAATTT+TGG - chr1_3:16115289-16115308 Msa0106620:CDS 30.0%
GTATCTACATTAACATCAAC+CGG + chr1_3:16115479-16115498 None:intergenic 30.0%
! TGTTGAAAATGGTTTGGATA+AGG - chr1_3:16115547-16115566 Msa0106620:intron 30.0%
AGATTAAAAACGATGCAGTT+GGG - chr1_3:16115855-16115874 Msa0106620:intron 30.0%
AACTTCTCTATCAACAACAT+TGG + chr1_3:16116092-16116111 None:intergenic 30.0%
TTCAGTTGAAGCTGAAAATT+CGG - chr1_3:16116153-16116172 Msa0106620:intron 30.0%
CTTGATTATACTCTTTACGA+AGG + chr1_3:16116711-16116730 None:intergenic 30.0%
TAAACAATGCAATTTCTGTC+GGG - chr1_3:16116827-16116846 Msa0106620:CDS 30.0%
GAGATGTTGATACAACAAAA+AGG + chr1_3:16116923-16116942 None:intergenic 30.0%
AAACTATTGAAGCAAAATCG+TGG - chr1_3:16117040-16117059 Msa0106620:intron 30.0%
AAGAAGAAATATGAGGAAGA+AGG - chr1_3:16117329-16117348 Msa0106620:intron 30.0%
! TCAAGTTACAGACTTTGAAA+AGG - chr1_3:16117417-16117436 Msa0106620:CDS 30.0%
TTGATACTAATGCCAAATCT+AGG - chr1_3:16117641-16117660 Msa0106620:CDS 30.0%
TGATACTAATGCCAAATCTA+GGG - chr1_3:16117642-16117661 Msa0106620:CDS 30.0%
GTTGCTTGTAGAAATTTAGA+TGG - chr1_3:16117698-16117717 Msa0106620:CDS 30.0%
AGTATTACTTCATGAGTACA+TGG + chr1_3:16117740-16117759 None:intergenic 30.0%
CTGAAAATGAGATATCCATT+GGG + chr1_3:16117886-16117905 None:intergenic 30.0%
AATATTTGCTCTGTACAGTA+TGG + chr1_3:16118184-16118203 None:intergenic 30.0%
! CTGTACAGAGCAAATATTTT+TGG - chr1_3:16118186-16118205 Msa0106620:CDS 30.0%
!!! TCGATTTCTTTTGTTGTTCA+GGG + chr1_3:16118591-16118610 None:intergenic 30.0%
!!! ATCGATTTCTTTTGTTGTTC+AGG + chr1_3:16118592-16118611 None:intergenic 30.0%
ACCTGTTACTGTTAATACAA+AGG - chr1_3:16118621-16118640 Msa0106620:CDS 30.0%
TCCTTTGTATTAACAGTAAC+AGG + chr1_3:16118625-16118644 None:intergenic 30.0%
!!! CTTTGTTTTGTGAATTGAGA+TGG + chr1_3:16119432-16119451 None:intergenic 30.0%
TCAATTCACAAAACAAAGCA+AGG - chr1_3:16119434-16119453 Msa0106620:CDS 30.0%
!!! TATTGCTGCCTTGTTTTATA+TGG - chr1_3:16119542-16119561 Msa0106620:CDS 30.0%
!!! ATTGCTGCCTTGTTTTATAT+GGG - chr1_3:16119543-16119562 Msa0106620:CDS 30.0%
AGATCTTCATTTCAAAGCTT+TGG - chr1_3:16119582-16119601 Msa0106620:CDS 30.0%
!!! TTTCAAAGCTTTGGTTTTTG+AGG - chr1_3:16119591-16119610 Msa0106620:CDS 30.0%
!!! CGAAGCAAGTTTTTTAACTT+TGG + chr1_3:16119622-16119641 None:intergenic 30.0%
!! GTTTCTGATGTGATTTTAAC+TGG - chr1_3:16119814-16119833 Msa0106620:CDS 30.0%
! AAGAAATTGAAAAGCGCGTT+TGG + chr1_3:16114229-16114248 None:intergenic 35.0%
!! AAGATCACAGAGCATTGTAA+TGG - chr1_3:16114384-16114403 Msa0106620:CDS 35.0%
ATTTCTGTTAACGGCAATGT+CGG - chr1_3:16114414-16114433 Msa0106620:CDS 35.0%
GTGACGGTTATGAATTCTAA+CGG - chr1_3:16114534-16114553 Msa0106620:CDS 35.0%
GAAGATTTGTGAAAACGGTT+CGG - chr1_3:16114593-16114612 Msa0106620:CDS 35.0%
AAGATTTGTGAAAACGGTTC+GGG - chr1_3:16114594-16114613 Msa0106620:CDS 35.0%
TTTGTGATTGTTGAAAACGG+TGG - chr1_3:16114648-16114667 Msa0106620:intron 35.0%
!! TGAAGAAGTTGCTGATTCTA+CGG - chr1_3:16114872-16114891 Msa0106620:intron 35.0%
CGAAATTCGTGATGTTGAAT+TGG - chr1_3:16114980-16114999 Msa0106620:CDS 35.0%
TGATAATCGCGATGTTGAAT+TGG - chr1_3:16115103-16115122 Msa0106620:CDS 35.0%
CAGCTGAGAAAAACGAAATT+CGG - chr1_3:16115288-16115307 Msa0106620:CDS 35.0%
AGCTGAGAAAAACGAAATTC+GGG - chr1_3:16115343-16115362 Msa0106620:CDS 35.0%
! GAAACTCCAGTTGATGTTAA+TGG - chr1_3:16115422-16115441 Msa0106620:CDS 35.0%
CAAACTCCATTAACATCAAC+TGG + chr1_3:16115431-16115450 None:intergenic 35.0%
! TTGTGATAATGCAGATGAGA+AGG - chr1_3:16115448-16115467 Msa0106620:CDS 35.0%
! AAATGGTTTGGATAAGGTAC+CGG - chr1_3:16115553-16115572 Msa0106620:intron 35.0%
AATGTGATTCCTGTTGATGT+CGG - chr1_3:16115674-16115693 Msa0106620:CDS 35.0%
ACTTTGACAGCATTATCTGA+AGG + chr1_3:16115809-16115828 None:intergenic 35.0%
GATAATGCTGTCAAAGTTGA+AGG - chr1_3:16115812-16115831 Msa0106620:intron 35.0%
GAGATTAAAAACGATGCAGT+TGG - chr1_3:16115854-16115873 Msa0106620:intron 35.0%
GATTAAAAACGATGCAGTTG+GGG - chr1_3:16115856-16115875 Msa0106620:intron 35.0%
AAATCTGCAACATCAACAGA+AGG + chr1_3:16116064-16116083 None:intergenic 35.0%
TTCAGCTTCAACTGAAGTTT+CGG + chr1_3:16116149-16116168 None:intergenic 35.0%
TTCAGTTGAAGCTGAAACTT+CGG - chr1_3:16116237-16116256 Msa0106620:intron 35.0%
TTGTCATCATCATCGTATCT+CGG + chr1_3:16116472-16116491 None:intergenic 35.0%
AAACAATGCAATTTCTGTCG+GGG - chr1_3:16116828-16116847 Msa0106620:CDS 35.0%
!! AAGCATTGAAGAGCAAACTA+AGG - chr1_3:16117120-16117139 Msa0106620:CDS 35.0%
AGCAGCAAAGAAGAAATATG+AGG - chr1_3:16117322-16117341 Msa0106620:intron 35.0%
TAATCAAGTGGATGAGGTTA+TGG - chr1_3:16117352-16117371 Msa0106620:CDS 35.0%
GTATTTCCCTCAAGGAAAAA+GGG + chr1_3:16117501-16117520 None:intergenic 35.0%
AGTATTTCCCTCAAGGAAAA+AGG + chr1_3:16117502-16117521 None:intergenic 35.0%
TTTCTACAGTATTTCCCTCA+AGG + chr1_3:16117509-16117528 None:intergenic 35.0%
TTGAGGGAAATACTGTAGAA+AGG - chr1_3:16117508-16117527 Msa0106620:CDS 35.0%
GATACTAATGCCAAATCTAG+GGG - chr1_3:16117643-16117662 Msa0106620:CDS 35.0%
! GTTCCAATACTAGCTTATAC+TGG - chr1_3:16117671-16117690 Msa0106620:CDS 35.0%
AGACCAGTATAAGCTAGTAT+TGG + chr1_3:16117677-16117696 None:intergenic 35.0%
GTAGAAATTTAGATGGCCTA+AGG - chr1_3:16117705-16117724 Msa0106620:CDS 35.0%
TACTCGATTATTGAGTAGCT+AGG - chr1_3:16117756-16117775 Msa0106620:CDS 35.0%
ACTCGATTATTGAGTAGCTA+GGG - chr1_3:16117757-16117776 Msa0106620:CDS 35.0%
!! AAAAGGAATATGCTGCTTTG+TGG - chr1_3:16117781-16117800 Msa0106620:CDS 35.0%
CCTGAAAATGAGATATCCAT+TGG + chr1_3:16117887-16117906 None:intergenic 35.0%
! CCAATGGATATCTCATTTTC+AGG - chr1_3:16117884-16117903 Msa0106620:CDS 35.0%
TCAGGATTACTGTATCATCT+AGG - chr1_3:16117902-16117921 Msa0106620:CDS 35.0%
ACAGTATGGTGAACAAAACT+AGG + chr1_3:16118170-16118189 None:intergenic 35.0%
TCTTACTGCGCTGTATTATT+AGG - chr1_3:16118334-16118353 Msa0106620:CDS 35.0%
TAGGCGAATAAACTTGAATG+TGG - chr1_3:16118353-16118372 Msa0106620:CDS 35.0%
AGTTCAGAAAGGACTATTAC+CGG - chr1_3:16118431-16118450 Msa0106620:CDS 35.0%
TTTGTAAGCTCTTTCAGTGA+AGG + chr1_3:16118542-16118561 None:intergenic 35.0%
!!! CGATTTCTTTTGTTGTTCAG+GGG + chr1_3:16118590-16118609 None:intergenic 35.0%
TTAACAGTAACAGGTTCTGT+TGG + chr1_3:16118616-16118635 None:intergenic 35.0%
! TTACTTGTCTGGCTTATTTC+AGG + chr1_3:16118679-16118698 None:intergenic 35.0%
!!! GCTTTTTAGGTTTACTTGTC+TGG + chr1_3:16118690-16118709 None:intergenic 35.0%
ATTAGGTTCCTTCTCTTCAT+CGG + chr1_3:16118776-16118795 None:intergenic 35.0%
TTTGTTCTCACAGGTTCATT+AGG + chr1_3:16118793-16118812 None:intergenic 35.0%
TAATGAACCTGTGAGAACAA+AGG - chr1_3:16118792-16118811 Msa0106620:CDS 35.0%
CAAAGCTGAAGGAAATGAAA+AGG - chr1_3:16118869-16118888 Msa0106620:CDS 35.0%
AGAGGAAATTGAGAAAGCTA+AGG - chr1_3:16118894-16118913 Msa0106620:CDS 35.0%
GAGAAAAGAGCAAAGAAGAA+GGG - chr1_3:16119258-16119277 Msa0106620:CDS 35.0%
!! GCTTTGAAATGAAGATCTCA+AGG + chr1_3:16119580-16119599 None:intergenic 35.0%
TTCGATGCAAAGCAATCATT+AGG - chr1_3:16119638-16119657 Msa0106620:CDS 35.0%
AATCATTAGGTGTTTGCCTT+GGG - chr1_3:16119651-16119670 Msa0106620:intron 35.0%
TCTCTTCTCTTCTTCTCTGT+CGG - chr1_3:16114039-16114058 Msa0106620:three_prime_UTR 40.0%
GGGAAATAAGTTAGTTGGGT+GGG + chr1_3:16114098-16114117 None:intergenic 40.0%
AGGGAAATAAGTTAGTTGGG+TGG + chr1_3:16114099-16114118 None:intergenic 40.0%
!! CACAGAGCATTGTAATGGTA+AGG - chr1_3:16114389-16114408 Msa0106620:CDS 40.0%
AACGATCGGATCTGAAAGAA+CGG + chr1_3:16114451-16114470 None:intergenic 40.0%
! TAGCAACGAATCTGAAGTGA+CGG - chr1_3:16114518-16114537 Msa0106620:CDS 40.0%
TTCTAACGGTGAAACGACAA+CGG - chr1_3:16114548-16114567 Msa0106620:CDS 40.0%
TGAAAACGGTGGAGAATTGA+AGG - chr1_3:16114659-16114678 Msa0106620:intron 40.0%
TGGAGAATTGAAGGAATGTG+CGG - chr1_3:16114668-16114687 Msa0106620:intron 40.0%
TGTTGAGAATGAGATTCGTG+AGG - chr1_3:16114701-16114720 Msa0106620:intron 40.0%
AAGAGTGATCGTGAATTGGA+AGG - chr1_3:16114801-16114820 Msa0106620:intron 40.0%
!! GAATTGGAAGGTGTTGAGAA+CGG - chr1_3:16114813-16114832 Msa0106620:intron 40.0%
ATCAGCAACTTCTTCAACAG+CGG + chr1_3:16114868-16114887 None:intergenic 40.0%
GAAAGCGAAAATCTTTCGGA+TGG - chr1_3:16114951-16114970 Msa0106620:CDS 40.0%
AATTCACTTTCCTTCTCAGC+TGG + chr1_3:16115032-16115051 None:intergenic 40.0%
AGCTGAGAAGGAAAGTGAAT+TGG - chr1_3:16115031-16115050 Msa0106620:CDS 40.0%
CGAAATTCGGGATGTTGAAT+TGG - chr1_3:16115355-16115374 Msa0106620:CDS 40.0%
TGATGCTGAAGTGAGTGAAT+CGG - chr1_3:16115388-16115407 Msa0106620:CDS 40.0%
TGTATCAGAGACAGACTCAA+CGG + chr1_3:16115525-16115544 None:intergenic 40.0%
TTATCAGAGACAGACTCAAC+CGG + chr1_3:16115575-16115594 None:intergenic 40.0%
GTTGAGTCTGTCTCTGATAA+TGG - chr1_3:16115575-16115594 Msa0106620:intron 40.0%
!! GTCTGTCTCTGATAATGGTT+TGG - chr1_3:16115580-16115599 Msa0106620:intron 40.0%
!! CTCTGATAATGGTTTGGAGA+AGG - chr1_3:16115586-16115605 Msa0106620:intron 40.0%
! TAATGGTTTGGAGAAGGTAC+CGG - chr1_3:16115592-16115611 Msa0106620:intron 40.0%
!! GTCTGTCTCTGATAATGGTT+TGG - chr1_3:16115580-16115599 Msa0106620:intron 40.0%
! TCATTTTCACCTTCATCAGC+AGG + chr1_3:16115731-16115750 None:intergenic 40.0%
TGAGGTGAGAGACATTAAAG+AGG - chr1_3:16115769-16115788 Msa0106620:intron 40.0%
AGACATTAAAGAGGAGAGTG+AGG - chr1_3:16115778-16115797 Msa0106620:intron 40.0%
GGATGAAGTTGAACCTTCAA+AGG - chr1_3:16115877-16115896 Msa0106620:intron 40.0%
GAACAATGTAGTGCATAGTG+AGG - chr1_3:16116033-16116052 Msa0106620:intron 40.0%
TTCAGTTGAAACTGAGACTG+CGG - chr1_3:16116117-16116136 Msa0106620:intron 40.0%
GAAGTTTCAGCTTCAACTGA+AGG + chr1_3:16116238-16116257 None:intergenic 40.0%
TTCAGCTTCAATAGAGGTCT+CGG + chr1_3:16116269-16116288 None:intergenic 40.0%
TGAAGGTTCAGCTTCAATAG+AGG + chr1_3:16116275-16116294 None:intergenic 40.0%
GAAGTTTGAGCTTCAACTGA+AGG + chr1_3:16116292-16116311 None:intergenic 40.0%
ACATGCTCTTCAACAAGTAG+AGG - chr1_3:16116510-16116529 Msa0106620:CDS 40.0%
!! AACTGCTTACCTTTTTAGCC+AGG + chr1_3:16116573-16116592 None:intergenic 40.0%
CAAATCCAAACGACAAGAGA+TGG - chr1_3:16116777-16116796 Msa0106620:CDS 40.0%
TGAATCCATCTCTTGTCGTT+TGG + chr1_3:16116785-16116804 None:intergenic 40.0%
! TTCAGCGATTACAGCTTTTG+AGG - chr1_3:16117246-16117265 Msa0106620:intron 40.0%
!! ACAGCTTTTGAGGAAGGAAT+TGG - chr1_3:16117256-16117275 Msa0106620:intron 40.0%
GCTTAGAAGTAATCTCCTGA+AGG - chr1_3:16117283-16117302 Msa0106620:intron 40.0%
TAGTTATTGCTTCTGCCTTC+AGG + chr1_3:16117301-16117320 None:intergenic 40.0%
TGAGGAAGAAGGTAATCAAG+TGG - chr1_3:16117340-16117359 Msa0106620:CDS 40.0%
AGAAGGTAATCAAGTGGATG+AGG - chr1_3:16117346-16117365 Msa0106620:CDS 40.0%
GAAAAGGCAATTGCATGAGA+AGG - chr1_3:16117433-16117452 Msa0106620:CDS 40.0%
GGAAAAAGGGCGGAAAAAAA+AGG + chr1_3:16117488-16117507 None:intergenic 40.0%
TTGAGTGCTTATTCACAACG+AGG - chr1_3:16117600-16117619 Msa0106620:CDS 40.0%
TATTGAGTAGCTAGGGCAAA+AGG - chr1_3:16117764-16117783 Msa0106620:CDS 40.0%
! GCATTTGCTGCGTACTTTAA+TGG + chr1_3:16117817-16117836 None:intergenic 40.0%
AGGCTTACATGAATAGTGTC+TGG - chr1_3:16117922-16117941 Msa0106620:CDS 40.0%
!!! CTGGAGGATGATGTGTTTTT+TGG - chr1_3:16118044-16118063 Msa0106620:CDS 40.0%
TCAATGAGACTGCAAGAACT+AGG - chr1_3:16118224-16118243 Msa0106620:CDS 40.0%
!! GCACTTACCAATTAGCTTTC+AGG - chr1_3:16118375-16118394 Msa0106620:CDS 40.0%
GAAGAATGACGAGTTCAGAA+AGG - chr1_3:16118420-16118439 Msa0106620:CDS 40.0%
AGGAGACTGCAAACTTTAGA+TGG - chr1_3:16118475-16118494 Msa0106620:CDS 40.0%
! GCAAGTTTTGCAGGCTTTTT+AGG + chr1_3:16118703-16118722 None:intergenic 40.0%
GAAGGAAATGAAAAGGCTAG+AGG - chr1_3:16118876-16118895 Msa0106620:CDS 40.0%
GGAAATTGAGAAAGCTAAGG+AGG - chr1_3:16118897-16118916 Msa0106620:CDS 40.0%
! GAAAAAGCGTAATGCCGAAA+AGG - chr1_3:16118930-16118949 Msa0106620:CDS 40.0%
CTTATAGAGAGCCCTTTGTT+GGG + chr1_3:16118956-16118975 None:intergenic 40.0%
AGAAGCTGAGCAAAAAGAGA+AGG - chr1_3:16118984-16119003 Msa0106620:CDS 40.0%
ATGCCTATTTGTGCAGGAAA+GGG - chr1_3:16119236-16119255 Msa0106620:CDS 40.0%
GGAGAAAAGAGCAAAGAAGA+AGG - chr1_3:16119257-16119276 Msa0106620:CDS 40.0%
AGTTACTACTGAAGATGCTG+TGG - chr1_3:16119293-16119312 Msa0106620:CDS 40.0%
TGAAACTCTGACAAGAACTC+TGG - chr1_3:16119353-16119372 Msa0106620:CDS 40.0%
CAAGGTAAAAGCTTTACCCA+TGG - chr1_3:16119452-16119471 Msa0106620:CDS 40.0%
GTTGAATTCGTCTCTTACCA+CGG + chr1_3:16119488-16119507 None:intergenic 40.0%
GTAAGAGACGAATTCAACCA+TGG - chr1_3:16119490-16119509 Msa0106620:CDS 40.0%
AATTCAACCATGGATGTGGT+GGG - chr1_3:16119500-16119519 Msa0106620:CDS 40.0%
CAATCATTAGGTGTTTGCCT+TGG - chr1_3:16119650-16119669 Msa0106620:intron 40.0%
ATCATTAGGTGTTTGCCTTG+GGG - chr1_3:16119652-16119671 Msa0106620:intron 40.0%
GCTTCTGCGACCAATTATTA+TGG - chr1_3:16119843-16119862 Msa0106620:CDS 40.0%
TACTCCACCTTTACCGTTAG+CGG + chr1_3:16114484-16114503 None:intergenic 45.0%
TAACGGTAAAGGTGGAGTAG+CGG - chr1_3:16114485-16114504 Msa0106620:CDS 45.0%
AGAATTGAAGGAATGTGCGG+TGG - chr1_3:16114671-16114690 Msa0106620:intron 45.0%
TCGTGAGGAAGAAGAAGTGA+AGG - chr1_3:16114716-16114735 Msa0106620:intron 45.0%
TGAGGAAGAAGAAGTGAAGG+TGG - chr1_3:16114719-16114738 Msa0106620:intron 45.0%
GTGAAGGTGGAGGATCAAAA+CGG - chr1_3:16114732-16114751 Msa0106620:intron 45.0%
GGACAAGAGTGATCGTGAAT+TGG - chr1_3:16114797-16114816 Msa0106620:intron 45.0%
GAACGGAGTTAAAGAGATCG+AGG - chr1_3:16114830-16114849 Msa0106620:intron 45.0%
!! AGTTGCTGATTCTACGGATG+CGG - chr1_3:16114878-16114897 Msa0106620:intron 45.0%
! GGAGGTGGTTGATTCTGATA+CGG - chr1_3:16114902-16114921 Msa0106620:intron 45.0%
TGAAGTTGAACCAGCTGAGA+AGG - chr1_3:16115019-16115038 Msa0106620:CDS 45.0%
! TTGGAAAGTGTAGCTGTTCC+TGG - chr1_3:16115050-16115069 Msa0106620:CDS 45.0%
GGATGTTGAATTGGAAACCG+TGG - chr1_3:16115364-16115383 Msa0106620:CDS 45.0%
ACTCACTTCAGCATCAACCA+CGG + chr1_3:16115384-16115403 None:intergenic 45.0%
TGCAGATGAGAAGGAAACTC+CGG - chr1_3:16115457-16115476 Msa0106620:CDS 45.0%
TTATCAGAGACAGACTCGAC+CGG + chr1_3:16115614-16115633 None:intergenic 45.0%
GTCGAGTCTGTCTCTGATAA+TGG - chr1_3:16115614-16115633 Msa0106620:intron 45.0%
!! CTCTGATAATGGTTTGGCAG+AGG - chr1_3:16115625-16115644 Msa0106620:CDS 45.0%
! TAATGGTTTGGCAGAGGTTG+AGG - chr1_3:16115631-16115650 Msa0106620:CDS 45.0%
TGAGGTGAGTGAATGCATCA+AGG - chr1_3:16115649-16115668 Msa0106620:CDS 45.0%
ACCTTCTGTTGTTACGTCTG+AGG - chr1_3:16115751-16115770 Msa0106620:intron 45.0%
ACCTCAGACGTAACAACAGA+AGG + chr1_3:16115755-16115774 None:intergenic 45.0%
! CTCGTAGCTGTTTCCTTTGA+AGG + chr1_3:16115893-16115912 None:intergenic 45.0%
AGCTGAGCCTTCAACAGAAA+CGG - chr1_3:16115916-16115935 Msa0106620:intron 45.0%
AGCCGAACCTTCAACTGAAA+CGG - chr1_3:16115952-16115971 Msa0106620:intron 45.0%
CACTAGTTCCGTTGAAGGTT+CGG + chr1_3:16115993-16116012 None:intergenic 45.0%
GCAGTCTCAGTTTCAACTGA+AGG + chr1_3:16116118-16116137 None:intergenic 45.0%
GAAGCTCAAACTTCAGCTGA+AGG - chr1_3:16116298-16116317 Msa0106620:intron 45.0%
ATCAGTGGCAGATGCTTCTT+GGG + chr1_3:16116359-16116378 None:intergenic 45.0%
TTTCAGCTCGAATTTCGTCG+CGG + chr1_3:16116549-16116568 None:intergenic 45.0%
AGCTGAAAGCCTGGCTAAAA+AGG - chr1_3:16116561-16116580 Msa0106620:CDS 45.0%
TACAAGAAGAGAGAGCTGCT+AGG - chr1_3:16116746-16116765 Msa0106620:intron 45.0%
ACAAGAAGAGAGAGCTGCTA+GGG - chr1_3:16116747-16116766 Msa0106620:intron 45.0%
TGTCGGGGATATAGATAGCA+AGG - chr1_3:16116843-16116862 Msa0106620:CDS 45.0%
TTAGAGGCAGAGTTTCATGC+TGG + chr1_3:16116991-16117010 None:intergenic 45.0%
!! GCGATTACAGCTTTTGAGGA+AGG - chr1_3:16117250-16117269 Msa0106620:intron 45.0%
AAGTGGATGAGGTTATGGCT+CGG - chr1_3:16117357-16117376 Msa0106620:CDS 45.0%
TGCCTCTTGACGAGTGTTAT+CGG + chr1_3:16117393-16117412 None:intergenic 45.0%
GGCAATTGCATGAGAAGGTT+TGG - chr1_3:16117438-16117457 Msa0106620:CDS 45.0%
! TTTTCCGCCCTTTTTCCTTG+AGG - chr1_3:16117491-16117510 Msa0106620:CDS 45.0%
! TTTCCGCCCTTTTTCCTTGA+GGG - chr1_3:16117492-16117511 Msa0106620:CDS 45.0%
TTTCCCTCAAGGAAAAAGGG+CGG + chr1_3:16117498-16117517 None:intergenic 45.0%
GTGCTTATTCACAACGAGGA+AGG - chr1_3:16117604-16117623 Msa0106620:CDS 45.0%
GGAACTCATACCCCTAGATT+TGG + chr1_3:16117656-16117675 None:intergenic 45.0%
CTGCGTACTTTAATGGCACA+AGG + chr1_3:16117810-16117829 None:intergenic 45.0%
GTCTGGAGACTAGTGTTAGT+AGG - chr1_3:16117939-16117958 Msa0106620:CDS 45.0%
TCTGCTGAACTAGGTTGTTC+TGG - chr1_3:16118025-16118044 Msa0106620:CDS 45.0%
! GGAGCGCTTATGTATTGATC+AGG - chr1_3:16118271-16118290 Msa0106620:CDS 45.0%
CTCTCAGCCTGAAAGCTAAT+TGG + chr1_3:16118385-16118404 None:intergenic 45.0%
ACTATTACCGGTGCAATACC+AGG - chr1_3:16118443-16118462 Msa0106620:CDS 45.0%
CTTCACCAGGATTAAGCGTT+CGG + chr1_3:16118501-16118520 None:intergenic 45.0%
TCAGTGAAGGCAGGAATCAT+GGG + chr1_3:16118529-16118548 None:intergenic 45.0%
TTCAGTGAAGGCAGGAATCA+TGG + chr1_3:16118530-16118549 None:intergenic 45.0%
TAAGCTCTTTCAGTGAAGGC+AGG + chr1_3:16118538-16118557 None:intergenic 45.0%
AAAGGATGAACCTGCTTCCA+AGG - chr1_3:16118639-16118658 Msa0106620:CDS 45.0%
! AGGTTTTTGTACCACAGCCT+TGG + chr1_3:16118659-16118678 None:intergenic 45.0%
! TCTGAAGGAGCAAGTTTTGC+AGG + chr1_3:16118712-16118731 None:intergenic 45.0%
!! TCTGCTGACTTCTTCTCTGA+AGG + chr1_3:16118727-16118746 None:intergenic 45.0%
AGCAGATCGAGTTTCTCGTT+GGG - chr1_3:16118741-16118760 Msa0106620:CDS 45.0%
TGAACCTGTGAGAACAAAGG+AGG - chr1_3:16118795-16118814 Msa0106620:CDS 45.0%
TCTTCCTCCTTTGTTCTCAC+AGG + chr1_3:16118802-16118821 None:intergenic 45.0%
TGTGAGAACAAAGGAGGAAG+AGG - chr1_3:16118801-16118820 Msa0106620:CDS 45.0%
GGAAGAAGAAGCAAAGCTGA+AGG - chr1_3:16118858-16118877 Msa0106620:CDS 45.0%
CCTTATAGAGAGCCCTTTGT+TGG + chr1_3:16118957-16118976 None:intergenic 45.0%
CCAACAAAGGGCTCTCTATA+AGG - chr1_3:16118954-16118973 Msa0106620:CDS 45.0%
CATGCCTATTTGTGCAGGAA+AGG - chr1_3:16119235-16119254 Msa0106620:CDS 45.0%
TCTCCCTTTCCTGCACAAAT+AGG + chr1_3:16119242-16119261 None:intergenic 45.0%
CTTGTCAGAGTTTCAGAGCT+AGG + chr1_3:16119348-16119367 None:intergenic 45.0%
TCAGCTTGAGAAACCAGTTG+AGG - chr1_3:16119386-16119405 Msa0106620:CDS 45.0%
!! GCTCGTTTTGTTACCTCAAC+TGG + chr1_3:16119402-16119421 None:intergenic 45.0%
GACGAATTCAACCATGGATG+TGG - chr1_3:16119496-16119515 Msa0106620:CDS 45.0%
GAATTCAACCATGGATGTGG+TGG - chr1_3:16119499-16119518 Msa0106620:CDS 45.0%
ATTAGAACCCACCACATCCA+TGG + chr1_3:16119510-16119529 None:intergenic 45.0%
! GTGGGTTCTAATTGCAGTTC+TGG - chr1_3:16119518-16119537 Msa0106620:CDS 45.0%
TCATTAGGTGTTTGCCTTGG+GGG - chr1_3:16119653-16119672 Msa0106620:intron 45.0%
! TTCAGGAAGCGCAATGACAG+CGG - chr1_3:16114257-16114276 Msa0106620:three_prime_UTR 50.0%
TCCGATAACACCGACAACGT+CGG - chr1_3:16114312-16114331 Msa0106620:CDS 50.0%
TTTACCGTTAGCGGCGTCAA+CGG + chr1_3:16114475-16114494 None:intergenic 50.0%
TAAAGGTGGAGTAGCGGTAG+AGG - chr1_3:16114491-16114510 Msa0106620:CDS 50.0%
! CAACGGTTGATGTCGTTGAG+CGG - chr1_3:16114565-16114584 Msa0106620:CDS 50.0%
! AACGGTTGATGTCGTTGAGC+GGG - chr1_3:16114566-16114585 Msa0106620:CDS 50.0%
GGAAGAAGAAGTGAAGGTGG+AGG - chr1_3:16114722-16114741 Msa0106620:intron 50.0%
TTGCGATGTTGTTGCTGACG+TGG - chr1_3:16114776-16114795 Msa0106620:intron 50.0%
CGGAGTTAAAGAGATCGAGG+AGG - chr1_3:16114833-16114852 Msa0106620:intron 50.0%
! GGTGGTTGATTCTGATACGG+TGG - chr1_3:16114905-16114924 Msa0106620:intron 50.0%
! GAAGCTGATTCACTCACTCC+AGG + chr1_3:16115071-16115090 None:intergenic 50.0%
! TCTGATTCGCCGACATCAAC+AGG + chr1_3:16115686-16115705 None:intergenic 50.0%
TTGATGTCGGCGAATCAGAG+AGG - chr1_3:16115687-16115706 Msa0106620:CDS 50.0%
ACACCAGAACCTGCTGATGA+AGG - chr1_3:16115719-16115738 Msa0106620:intron 50.0%
TCACCTTCATCAGCAGGTTC+TGG + chr1_3:16115725-16115744 None:intergenic 50.0%
TGAGCCTTCAACAGAAACGG+CGG - chr1_3:16115919-16115938 Msa0106620:intron 50.0%
CGCCGTTTCAGTTGAAGGTT+CGG + chr1_3:16115957-16115976 None:intergenic 50.0%
CGAACCTTCAACTGAAACGG+CGG - chr1_3:16115955-16115974 Msa0106620:intron 50.0%
GAGTGAAGCCGAACCTTCAA+CGG - chr1_3:16115982-16116001 Msa0106620:intron 50.0%
CGAACCTTCAACGGAACTAG+TGG - chr1_3:16115991-16116010 Msa0106620:intron 50.0%
CATCAGTGGCAGATGCTTCT+TGG + chr1_3:16116360-16116379 None:intergenic 50.0%
AGATGCATCCACAGCATCAG+TGG + chr1_3:16116374-16116393 None:intergenic 50.0%
TGGTGAGGAGGCCATTCTAT+TGG - chr1_3:16116434-16116453 Msa0106620:intron 50.0%
GAGGAGGCCATTCTATTGGT+TGG - chr1_3:16116438-16116457 Msa0106620:intron 50.0%
! GGCCATTCTATTGGTTGGTC+CGG - chr1_3:16116443-16116462 Msa0106620:intron 50.0%
! GCCATTCTATTGGTTGGTCC+GGG - chr1_3:16116444-16116463 Msa0106620:intron 50.0%
ACCCGGACCAACCAATAGAA+TGG + chr1_3:16116448-16116467 None:intergenic 50.0%
CATCATCGTATCTCGGAACC+CGG + chr1_3:16116465-16116484 None:intergenic 50.0%
CGAAATTCGAGCTGAAAGCC+TGG - chr1_3:16116552-16116571 Msa0106620:CDS 50.0%
TGCCGATAACACTCGTCAAG+AGG - chr1_3:16117388-16117407 Msa0106620:CDS 50.0%
GCAAATGCGACACACCTTTG+TGG - chr1_3:16117829-16117848 Msa0106620:CDS 50.0%
! CTTAGGCTGTGTTGACCCAA+TGG - chr1_3:16117868-16117887 Msa0106620:CDS 50.0%
GCTGAACTAGGTTGTTCTGG+AGG - chr1_3:16118028-16118047 Msa0106620:CDS 50.0%
! ACTGCAAGAACTAGGAGCAC+AGG - chr1_3:16118232-16118251 Msa0106620:CDS 50.0%
! CTGCAAGAACTAGGAGCACA+GGG - chr1_3:16118233-16118252 Msa0106620:CDS 50.0%
! TGCAAGAACTAGGAGCACAG+GGG - chr1_3:16118234-16118253 Msa0106620:CDS 50.0%
CTGTACTCCTGGTATTGCAC+CGG + chr1_3:16118453-16118472 None:intergenic 50.0%
! GCAATACCAGGAGTACAGTG+AGG - chr1_3:16118455-16118474 Msa0106620:CDS 50.0%
CAGCAGATCGAGTTTCTCGT+TGG - chr1_3:16118740-16118759 Msa0106620:CDS 50.0%
GCAGATCGAGTTTCTCGTTG+GGG - chr1_3:16118742-16118761 Msa0106620:CDS 50.0%
CAGATCGAGTTTCTCGTTGG+GGG - chr1_3:16118743-16118762 Msa0106620:CDS 50.0%
AGATCGAGTTTCTCGTTGGG+GGG - chr1_3:16118744-16118763 Msa0106620:CDS 50.0%
GAACAAAGGAGGAAGAGGAG+CGG - chr1_3:16118806-16118825 Msa0106620:CDS 50.0%
GGAAGAGGAGCGGATCTTAA+AGG - chr1_3:16118816-16118835 Msa0106620:CDS 50.0%
GCGGATCTTAAAGGCTGAAC+AGG - chr1_3:16118825-16118844 Msa0106620:CDS 50.0%
TCTTAAAGGCTGAACAGGCG+AGG - chr1_3:16118830-16118849 Msa0106620:CDS 50.0%
!! AAGCTAAGGAGGCACTGCAA+AGG - chr1_3:16118908-16118927 Msa0106620:CDS 50.0%
ATGCCGAAAAGGCCCAACAA+AGG - chr1_3:16118941-16118960 Msa0106620:CDS 50.0%
TGCCGAAAAGGCCCAACAAA+GGG - chr1_3:16118942-16118961 Msa0106620:CDS 50.0%
! AGCCCTTTGTTGGGCCTTTT+CGG + chr1_3:16118947-16118966 None:intergenic 50.0%
CCTGCACAAATAGGCATGCA+TGG + chr1_3:16119233-16119252 None:intergenic 50.0%
CCATGCATGCCTATTTGTGC+AGG - chr1_3:16119230-16119249 Msa0106620:CDS 50.0%
!! GCCGACGTTGTCGGTGTTAT+CGG + chr1_3:16114316-16114335 None:intergenic 55.0%
TTCACCTTCACCGCCTTCGA+CGG + chr1_3:16114340-16114359 None:intergenic 55.0%
GTTACCGTTGACGCCGCTAA+CGG - chr1_3:16114468-16114487 Msa0106620:CDS 55.0%
GTTGACGCCGCTAACGGTAA+AGG - chr1_3:16114474-16114493 Msa0106620:CDS 55.0%
!! TGCTGATTCTACGGATGCGG+TGG - chr1_3:16114881-16114900 Msa0106620:intron 55.0%
TGATTCTACGGATGCGGTGG+AGG - chr1_3:16114884-16114903 Msa0106620:intron 55.0%
TCCACCGCCGTTTCTGTTGA+AGG + chr1_3:16115926-16115945 None:intergenic 55.0%
ACCTTCAACTGAAACGGCGG+TGG - chr1_3:16115958-16115977 Msa0106620:intron 55.0%
TCCACCGCCGTTTCAGTTGA+AGG + chr1_3:16115962-16115981 None:intergenic 55.0%
CGCTCCACTAGTTCCGTTGA+AGG + chr1_3:16115998-16116017 None:intergenic 55.0%
AGCATCTGCCACTGATGCTG+TGG - chr1_3:16116363-16116382 Msa0106620:intron 55.0%
GTCCTGTGCATCCACGACAT+CGG + chr1_3:16116401-16116420 None:intergenic 55.0%
TGTCGTGGATGCACAGGACA+TGG - chr1_3:16116402-16116421 Msa0106620:intron 55.0%
GTCGTGGATGCACAGGACAT+GGG - chr1_3:16116403-16116422 Msa0106620:intron 55.0%
! AGGAGCACAGGGGAAGAAAG+AGG - chr1_3:16118244-16118263 Msa0106620:CDS 55.0%
ACAGGGGAAGAAAGAGGACG+TGG - chr1_3:16118250-16118269 Msa0106620:CDS 55.0%
CAGTCTCCTCACTGTACTCC+TGG + chr1_3:16118464-16118483 None:intergenic 55.0%
GATGGCCGAACGCTTAATCC+TGG - chr1_3:16118493-16118512 Msa0106620:CDS 55.0%
ATCATGGGAGGCTCTTCACC+AGG + chr1_3:16118514-16118533 None:intergenic 55.0%
GTGAAGGCAGGAATCATGGG+AGG + chr1_3:16118526-16118545 None:intergenic 55.0%
TGAACCTGCTTCCAAGGCTG+TGG - chr1_3:16118645-16118664 Msa0106620:CDS 55.0%
TGTACCACAGCCTTGGAAGC+AGG + chr1_3:16118652-16118671 None:intergenic 55.0%
GGACGAGTCCGATGAAGAGA+AGG - chr1_3:16118765-16118784 Msa0106620:CDS 55.0%
CCACGGTTGCGAATAGCCAT+GGG + chr1_3:16119471-16119490 None:intergenic 55.0%
ACCACGGTTGCGAATAGCCA+TGG + chr1_3:16119472-16119491 None:intergenic 55.0%
TAGGTGTTTGCCTTGGGGGA+TGG - chr1_3:16119657-16119676 Msa0106620:intron 55.0%
AGGTGTTTGCCTTGGGGGAT+GGG - chr1_3:16119658-16119677 Msa0106620:intron 55.0%
! AGGAAGCGCAATGACAGCGG+AGG - chr1_3:16114260-16114279 Msa0106620:three_prime_UTR 60.0%
AAGCGCAATGACAGCGGAGG+AGG - chr1_3:16114263-16114282 Msa0106620:three_prime_UTR 60.0%
GCGGCGTCAACGGTAACGAT+CGG + chr1_3:16114465-16114484 None:intergenic 60.0%
GACGCCGCTAACGGTAAAGG+TGG - chr1_3:16114477-16114496 Msa0106620:CDS 60.0%
TTCTACGGATGCGGTGGAGG+TGG - chr1_3:16114887-16114906 Msa0106620:intron 60.0%
GCCTTCAACAGAAACGGCGG+TGG - chr1_3:16115922-16115941 Msa0106620:intron 60.0%
TGCATCTGCCACCGATGTCG+TGG - chr1_3:16116387-16116406 Msa0106620:intron 60.0%
CTGTGCATCCACGACATCGG+TGG + chr1_3:16116398-16116417 None:intergenic 60.0%
CACCGATGTCGTGGATGCAC+AGG - chr1_3:16116396-16116415 Msa0106620:intron 60.0%
TGCACAGGACATGGGCTCTG+AGG - chr1_3:16116411-16116430 Msa0106620:intron 60.0%
!! ACAGGACATGGGCTCTGAGG+TGG - chr1_3:16116414-16116433 Msa0106620:intron 60.0%
!! ACATGGGCTCTGAGGTGGTG+AGG - chr1_3:16116419-16116438 Msa0106620:intron 60.0%
GGCTGAACAGGCGAGGAAGA+AGG - chr1_3:16118837-16118856 Msa0106620:CDS 60.0%
CCCATGGCTATTCGCAACCG+TGG - chr1_3:16119468-16119487 Msa0106620:CDS 60.0%
GTAAGGGTTCCCATCCCCCA+AGG + chr1_3:16119670-16119689 None:intergenic 60.0%
!! TTCGACGGCGCCGACGTTGT+CGG + chr1_3:16114325-16114344 None:intergenic 65.0%
!! TGGGCTCTGAGGTGGTGAGG+AGG - chr1_3:16116422-16116441 Msa0106620:intron 65.0%
GACAACGTCGGCGCCGTCGA+AGG - chr1_3:16114324-16114343 Msa0106620:CDS 70.0%
AACGTCGGCGCCGTCGAAGG+CGG - chr1_3:16114327-16114346 Msa0106620:CDS 70.0%
GGCGCCGTCGAAGGCGGTGA+AGG - chr1_3:16114333-16114352 Msa0106620:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 16114023 16119891 16114023 ID=Msa0106620;Name=Msa0106620
chr1_3 mRNA 16114023 16119891 16114023 ID=Msa0106620-mRNA-1;Parent=Msa0106620;Name=Msa0106620-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.85|0.75|1|0.85|0.75|8|280|1356
chr1_3 exon 16114023 16114662 16114023 ID=Msa0106620-mRNA-1:exon:6121;Parent=Msa0106620-mRNA-1
chr1_3 exon 16114909 16115517 16114909 ID=Msa0106620-mRNA-1:exon:6120;Parent=Msa0106620-mRNA-1
chr1_3 exon 16115622 16115720 16115622 ID=Msa0106620-mRNA-1:exon:6119;Parent=Msa0106620-mRNA-1
chr1_3 exon 16116460 16116663 16116460 ID=Msa0106620-mRNA-1:exon:6118;Parent=Msa0106620-mRNA-1
chr1_3 exon 16116773 16116949 16116773 ID=Msa0106620-mRNA-1:exon:6117;Parent=Msa0106620-mRNA-1
chr1_3 exon 16117050 16117208 16117050 ID=Msa0106620-mRNA-1:exon:6116;Parent=Msa0106620-mRNA-1
chr1_3 exon 16117332 16119662 16117332 ID=Msa0106620-mRNA-1:exon:6115;Parent=Msa0106620-mRNA-1
chr1_3 exon 16119760 16119891 16119760 ID=Msa0106620-mRNA-1:exon:6114;Parent=Msa0106620-mRNA-1
chr1_3 CDS 16119760 16119891 16119760 ID=Msa0106620-mRNA-1:cds;Parent=Msa0106620-mRNA-1
chr1_3 CDS 16117332 16119662 16117332 ID=Msa0106620-mRNA-1:cds;Parent=Msa0106620-mRNA-1
chr1_3 CDS 16117050 16117208 16117050 ID=Msa0106620-mRNA-1:cds;Parent=Msa0106620-mRNA-1
chr1_3 CDS 16116773 16116949 16116773 ID=Msa0106620-mRNA-1:cds;Parent=Msa0106620-mRNA-1
chr1_3 CDS 16116460 16116663 16116460 ID=Msa0106620-mRNA-1:cds;Parent=Msa0106620-mRNA-1
chr1_3 CDS 16115622 16115720 16115622 ID=Msa0106620-mRNA-1:cds;Parent=Msa0106620-mRNA-1
chr1_3 CDS 16114909 16115517 16114909 ID=Msa0106620-mRNA-1:cds;Parent=Msa0106620-mRNA-1
chr1_3 CDS 16114303 16114662 16114303 ID=Msa0106620-mRNA-1:cds;Parent=Msa0106620-mRNA-1
chr1_3 three_prime_UTR 16114023 16114302 16114023 ID=Msa0106620-mRNA-1:three_prime_utr;Parent=Msa0106620-mRNA-1
Gene Sequence

>Msa0106620

TTGTTTATTTATATTTTCTCTTCTCTTCTTCTCTGTCGGCTATTTATCTGCATCTACATCTCTTTCTCTGTTCCCACCCAACTAACTTATTTCCCTTCATCTCTCTATCTTTTTTCTTTGATCTACACTTCCCTTTTTTCAGGAAGCGCAATGACAGCGGAGGAGGTGTTAAACGTACACAGCAAACAAATTTCCGATAACACCGACAACGTCGGCGCCGTCGAAGGCGGTGAAGGTGAAAGTGAAGATCGTAATCATAACAACAAGATCACAGAGCATTGTAATGGTAAGGAAATTTCTGTTAACGGCAATGTCGGTGTTTCTGATTCCGTTCTTTCAGATCCGATCGTTACCGTTGACGCCGCTAACGGTAAAGGTGGAGTAGCGGTAGAGGATCATAGCAACGAATCTGAAGTGACGGTTATGAATTCTAACGGTGAAACGACAACGGTTGATGTCGTTGAGCGGGAAGAGAAGATTTGTGAAAACGGTTCGGGATCTGATGAGAATAACGTTAATGATGATGAATTTGTGATTGTTGAAAACGGTGGAGAATTGAAGGAATGTGCGGTGGAGAATCTTGTTGAGAATGAGATTCGTGAGGAAGAAGAAGTGAAGGTGGAGGATCAAAACGGTGTCGTTGAAGAGAATGAGATTTGCGATGTTGTTGCTGACGTGGACAAGAGTGATCGTGAATTGGAAGGTGTTGAGAACGGAGTTAAAGAGATCGAGGAGGTTTCTGTTGCCGCTGTTGAAGAAGTTGCTGATTCTACGGATGCGGTGGAGGTGGTTGATTCTGATACGGTGGAAAGAACCGAATCTAAAGATCATGAAAGCGAAAATCTTTCGGATGGAAAGAACGAAATTCGTGATGTTGAATTGGAAAGTAAAGTTGATGGTGAAGTTGAACCAGCTGAGAAGGAAAGTGAATTGGAAAGTGTAGCTGTTCCTGGAGTGAGTGAATCAGCTTCAGCTGAGAAGAATGATAATCGCGATGTTGAATTGGAAACTGTAGTTGATTCTGAAGTGAGTGAATCAGCTACGAAGAATGAAAATCGTGATGTTGAGTTGAAAACTGTAGTTGATTCTGAAGTGAGTGAATCAGCTGAGAAGAATGAAAATCGTGATGTTCAATTGGAAACTGTAGTTGATTCTGAAGTGAGTGAATCAGCTGAGAAAAACGAAATTTTGGAAACTGTAGTTGATTCTGAAGTGAGTGAATCAGCTGAGAAAAACGAAATTCGGGATGTTGAATTGGAAACCGTGGTTGATGCTGAAGTGAGTGAATCGGTCGAGAAGAATGAAACTCCAGTTGATGTTAATGGAGTTTGTGATAATGCAGATGAGAAGGAAACTCCGGTTGATGTTAATGTAGATACTCAAAATGATTTAGAGAAGGTGACCGTTGAGTCTGTCTCTGATACAATTGTTGAAAATGGTTTGGATAAGGTACCGGTTGAGTCTGTCTCTGATAATGGTTTGGAGAAGGTACCGGTCGAGTCTGTCTCTGATAATGGTTTGGCAGAGGTTGAGGTGAGTGAATGCATCAAGGAGAATGTGATTCCTGTTGATGTCGGCGAATCAGAGAGGTCTTTTGAGACACCAGAACCTGCTGATGAAGGTGAAAATGAACCTTCTGTTGTTACGTCTGAGGTGAGAGACATTAAAGAGGAGAGTGAGGCTGAACCTTCAGATAATGCTGTCAAAGTTGAAGGTGAATCTATTGAAGTCTCTGAGATTAAAAACGATGCAGTTGGGGATGAAGTTGAACCTTCAAAGGAAACAGCTACGAGTGAAGCTGAGCCTTCAACAGAAACGGCGGTGGAGCGTGAAGCCGAACCTTCAACTGAAACGGCGGTGGAGAGTGAAGCCGAACCTTCAACGGAACTAGTGGAGCGTGAAGCTGAAGTTTTGAACAATGTAGTGCATAGTGAGGCTGAGCCTTCTGTTGATGTTGCAGATTTGAAAACCAATGTTGTTGATAGAGAAGTTGAACCTTCAGTTGAAACTGAGACTGCGGTTGAAGCCGAAACTTCAGTTGAAGCTGAAAATTCGGTTGAAGCCGAAACATCAATTGAAACTTCAGTTGAAGCCGAAATTTCAATTGAAGCTGAACCTTCAGTTGAAGCTGAAACTTCGGTTGAAGCCGAGACCTCTATTGAAGCTGAACCTTCAGTTGAAGCTCAAACTTCAGCTGAAGGTAGCAATCAGACAACAGCTGAAGATTTGAAAACATCCCAAGAAGCATCTGCCACTGATGCTGTGGATGCATCTGCCACCGATGTCGTGGATGCACAGGACATGGGCTCTGAGGTGGTGAGGAGGCCATTCTATTGGTTGGTCCGGGTTCCGAGATACGATGATGATGACAATGTAAAAGAGCAGATTCAACATGCTCTTCAACAAGTAGAGGAGCAGACTAAAATCCGCGACGAAATTCGAGCTGAAAGCCTGGCTAAAAAGGCCCTTCGTAAAGAGTATAATCAAGAATTTAGAGCTGCAGTACAAGAAGAGAGAGCTGCTAGGGAGTTGCTCAAATCCAAACGACAAGAGATGGATTCAGTTCAATCCACCATGAATAGATTAAACAATGCAATTTCTGTCGGGGATATAGATAGCAAGATTCGAAACATGGAACACATGATCCAGCATGAAACTCTGCCTCTAAAAGAAGAAAAGCAATTGATTCGCCAAATCAAACTATTGAAGCAAAATCGTGGCGAGCTGTCTAATATTATTGCAAAACAGGATCAATCACAATCTCTCGACGACAAAGAAAGCATTGAAGAGCAAACTAAGCGATTACAGCTTTTGAGGAAGGAATTGGATGTGCTTAGAAGTAATCTCCTGAAGGCAGAAGCAATAACTAAAGCAGCAAAGAAGAAATATGAGGAAGAAGGTAATCAAGTGGATGAGGTTATGGCTCGGTATAACGCTGCCGATAACACTCGTCAAGAGGCATTTGTCAAGTTACAGACTTTGAAAAGGCAATTGCATGAGAAGAGCAAATATTTTTGGGAATACAGAAGTGCTTCAATGAGACTGCAAGAACTAGGAGCACAGGGGAAGAAAGAGGACGTGGAGCGCTTATGTATTGATCAGGCTGAGAGAATGCATGAGCTGTTGAAGAATGACGAGTTCAGAAAGGACTATTACCGGTGCAATACCAGGAGTACAGTGAGGAGACTGCAAACTTTAGATGGCCGAACGCTTAATCCTGGTGAAGAGCCTCCCATGATTCCTGCCTTCACTGAAAGAGCTTACAAAAATGATTCTTCAGTTTCGCAGTCAACCCCTGAACAACAAAAGAAATCGATACCAACAGAACCTGTTACTGTTAATACAAAGGATGAACCTGCTTCCAAGGCTGTGGTACAAAAACCTGAAATAAGCCAGACAAGTAAACCTAAAAAGCCTGCAAAACTTGCTCCTTCAGAGAAGAAGTCAGCAGATCGAGTTTCTCGTTGGGGGGACGAGTCCGATGAAGAGAAGGAACCTAATGAACCTGTGAGAACAAAGGAGGAAGAGGAGCGGATCTTAAAGGCTGAACAGGCGAGGAAGAAGGAAGAAGAAGCAAAGCTGAAGGAAATGAAAAGGCTAGAGGAAATTGAGAAAGCTAAGGAGGCACTGCAAAGGAAAAAGCGTAATGCCGAAAAGGCCCAACAAAGGGCTCTCTATAAGGCACAAAAAGAAGCTGAGCAAAAAGAGAAGGAAAGGGAGAAAAGAGCAAAGAAGAAGGGAAAAAGAAAGACAGTTACTACTGAAGATGCTGTGGAGAATACAGAACAAGATGCTGCAGCTTCTCCTAGCTCTGAAACTCTGACAAGAACTCTGGAAGAATCTGATCAGCTTGAGAAACCAGTTGAGGTAACAAAACGAGCAGTGAAACCATCTCAATTCACAAAACAAAGCAAGGTAAAAGCTTTACCCATGGCTATTCGCAACCGTGGTAAGAGACGAATTCAACCATGGATGTGGTGGGTTCTAATTGCAGTTCTGGTTATTGCTGCCTTGTTTTATATGGGAAATAACAGCTCCTTGAGATCTTCATTTCAAAGCTTTGGTTTTTGA
Protein sequence

>Msa0106620

LFIYIFSSLLLCRLFICIYISFSVPTQLTYFPSSLYLFSLIYTSLFSGSAMTAEEVLNVHSKQISDNTDNVGAVEGGEGESEDRNHNNKITEHCNGKEISVNGNVGVSDSVLSDPIVTVDAANGKGGVAVEDHSNESEVTVMNSNGETTTVDVVEREEKICENGSGSDENNVNDDEFVIVENGGELKECAVENLVENEIREEEEVKVEDQNGVVEENEICDVVADVDKSDRELEGVENGVKEIEEVSVAAVEEVADSTDAVEVVDSDTVERTESKDHESENLSDGKNEIRDVELESKVDGEVEPAEKESELESVAVPGVSESASAEKNDNRDVELETVVDSEVSESATKNENRDVELKTVVDSEVSESAEKNENRDVQLETVVDSEVSESAEKNEILETVVDSEVSESAEKNEIRDVELETVVDAEVSESVEKNETPVDVNGVCDNADEKETPVDVNVDTQNDLEKVTVESVSDTIVENGLDKVPVESVSDNGLEKVPVESVSDNGLAEVEVSECIKENVIPVDVGESERSFETPEPADEGENEPSVVTSEVRDIKEESEAEPSDNAVKVEGESIEVSEIKNDAVGDEVEPSKETATSEAEPSTETAVEREAEPSTETAVESEAEPSTELVEREAEVLNNVVHSEAEPSVDVADLKTNVVDREVEPSVETETAVEAETSVEAENSVEAETSIETSVEAEISIEAEPSVEAETSVEAETSIEAEPSVEAQTSAEGSNQTTAEDLKTSQEASATDAVDASATDVVDAQDMGSEVVRRPFYWLVRVPRYDDDDNVKEQIQHALQQVEEQTKIRDEIRAESLAKKALRKEYNQEFRAAVQEERAARELLKSKRQEMDSVQSTMNRLNNAISVGDIDSKIRNMEHMIQHETLPLKEEKQLIRQIKLLKQNRGELSNIIAKQDQSQSLDDKESIEEQTKRLQLLRKELDVLRSNLLKAEAITKAAKKKYEEEGNQVDEVMARYNAADNTRQEAFVKLQTLKRQLHEKSKYFWEYRSASMRLQELGAQGKKEDVERLCIDQAERMHELLKNDEFRKDYYRCNTRSTVRRLQTLDGRTLNPGEEPPMIPAFTERAYKNDSSVSQSTPEQQKKSIPTEPVTVNTKDEPASKAVVQKPEISQTSKPKKPAKLAPSEKKSADRVSRWGDESDEEKEPNEPVRTKEEEERILKAEQARKKEEEAKLKEMKRLEEIEKAKEALQRKKRNAEKAQQRALYKAQKEAEQKEKEREKRAKKKGKRKTVTTEDAVENTEQDAAASPSSETLTRTLEESDQLEKPVEVTKRAVKPSQFTKQSKVKALPMAIRNRGKRRIQPWMWWVLIAVLVIAALFYMGNNSSLRSSFQSFGF*