AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0106710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106710 MtrunA17_Chr1g0162861 90.805 1316 74 10 1 1295 1 1290 0.0 2174
Msa0106710 MtrunA17_Chr4g0074931 27.096 513 312 14 687 1181 42 510 7.89e-26 114
Msa0106710 MtrunA17_Chr2g0317411 24.945 453 272 12 716 1151 82 483 3.67e-22 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106710 AT1G20970.1 43.028 667 293 19 676 1282 713 1352 3.71e-111 381
Msa0106710 AT4G27500.2 27.484 473 283 14 717 1171 79 509 1.44e-17 88.2
Msa0106710 AT4G27500.1 27.484 473 283 14 717 1171 79 509 4.69e-17 87.0

Find 278 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTTGTCTGGCTTATTTC+AGG 0.180645 1_3:-16317452 None:intergenic
GAAATTCCAGTTGATGTTAA+TGG 0.242869 1_3:+16314203 Msa0106710:CDS
TTCAGCTTCAATTGAAATTT+CGG 0.262228 1_3:-16314993 None:intergenic
CTCGTAGCTGTTTCCTTTGA+AGG 0.262409 1_3:-16314671 None:intergenic
GCTTCTGCGACCAATTATTA+TGG 0.267077 1_3:+16318619 Msa0106710:three_prime_UTR
TCACGAAAGCGAAAATCTTT+TGG 0.273606 1_3:+16313764 Msa0106710:CDS
TAGTTATTGCTTCTGCCTTC+AGG 0.274660 1_3:-16316079 None:intergenic
TAATTTATTACCATAATAAT+TGG 0.277581 1_3:-16318629 None:intergenic
TTTGTTCTCACAGGTTCATT+AGG 0.278894 1_3:-16317566 None:intergenic
TCACCTTCATCAGCAGGTTC+TGG 0.286536 1_3:-16314503 None:intergenic
TCCTTTGTATTAACAGTAAC+AGG 0.287802 1_3:-16317398 None:intergenic
AGCTGAAAGCCTGGCTAAAA+AGG 0.291793 1_3:+16315342 Msa0106710:CDS
TACAATTGTTGAAAATGATT+TGG 0.305290 1_3:+16314322 Msa0106710:CDS
GTGGGTTCTAATTGCAGTTC+TGG 0.310673 1_3:+16318294 Msa0106710:CDS
TCCGATTCGCCGACATCAAC+AGG 0.311275 1_3:-16314464 None:intergenic
CGCCATTTCAGTTGAAGGTT+CGG 0.311872 1_3:-16314735 None:intergenic
CATCAGTGGCAGATGCTTCT+TGG 0.313490 1_3:-16315138 None:intergenic
TGAAGTTTCAATTGATGTTT+CGG 0.313983 1_3:-16314963 None:intergenic
CGAAATTCGTGATGTTGAAT+TGG 0.315573 1_3:+16313797 Msa0106710:CDS
GGAAGAGGAGCAGATCTTAA+AGG 0.315964 1_3:+16317592 Msa0106710:CDS
CCCTCAGCTAGTTCCGTTGA+AGG 0.318173 1_3:-16314776 None:intergenic
TCCACCGCCGTTTCTGTTGA+AGG 0.323975 1_3:-16314704 None:intergenic
CCAACAAAGGGCTCTCTATA+AGG 0.325558 1_3:+16317730 Msa0106710:CDS
TGAAAATCTTGATGTTGAAT+TGG 0.335231 1_3:+16313866 Msa0106710:CDS
TTTGCTTCAATAGTTTGATT+TGG 0.337754 1_3:-16315814 None:intergenic
TGCATTGTTTAATCTATTCA+TGG 0.338109 1_3:-16315596 None:intergenic
AGATCTTCATTTCAAAGCTT+TGG 0.338307 1_3:+16318358 Msa0106710:CDS
TTCAGCTTCAACTGAAGTTT+CGG 0.341890 1_3:-16314927 None:intergenic
GGCCATTCTATTGGTTGGTC+CGG 0.347271 1_3:+16315224 Msa0106710:CDS
AATCATTAGGTGTTTGCCTT+GGG 0.348423 1_3:+16318427 Msa0106710:three_prime_UTR
CCTTATAGAGAGCCCTTTGT+TGG 0.350120 1_3:-16317730 None:intergenic
AGCTAGTTCCGTTGAAGGTT+CGG 0.350167 1_3:-16314771 None:intergenic
GTCTAATATTATTGCAAAAC+AGG 0.352653 1_3:+16315850 Msa0106710:CDS
TGAATCCATCTCTTGTCGTT+TGG 0.352770 1_3:-16315563 None:intergenic
TGCCTCTTGACGAGTGTTAT+CGG 0.370866 1_3:-16316171 None:intergenic
ACATATAGAAGCAATTCTTT+TGG 0.372823 1_3:+16318483 Msa0106710:three_prime_UTR
CAAACTCCATTAACATCAAC+TGG 0.376525 1_3:-16314209 None:intergenic
GGTAAGGAAATTTCTGTTAA+CGG 0.377145 1_3:+16313219 Msa0106710:CDS
TGAGGTGAGAGACATTAAAA+AGG 0.378776 1_3:+16314550 Msa0106710:CDS
TCCACCGCCATTTCAGTTGA+AGG 0.384276 1_3:-16314740 None:intergenic
TAATCAAGTGGATGAGGTTA+TGG 0.384901 1_3:+16316133 Msa0106710:CDS
GCCGACGTTGTCGGTGTTAT+CGG 0.385683 1_3:-16313127 None:intergenic
GTTGAGTCTGTCTCTGATAA+TGG 0.391317 1_3:+16314356 Msa0106710:CDS
TGTTGAAAATGATTTGGATA+AGG 0.392492 1_3:+16314328 Msa0106710:CDS
TTGGAAAGTGTAGCTGTTCC+TGG 0.396775 1_3:+16313885 Msa0106710:CDS
TGAAAATCGTGATGTTCAAT+TGG 0.402656 1_3:+16314070 Msa0106710:CDS
GGAGAAAAGAGCAAAGAAGA+AGG 0.403456 1_3:+16318033 Msa0106710:CDS
TTCAATTGAAGCTGAACCTT+CGG 0.405082 1_3:+16315000 Msa0106710:CDS
ATCAGTGGCAGATGCTTCTT+GGG 0.406247 1_3:-16315137 None:intergenic
TCCTGTTGATGTCGGCGAAT+CGG 0.406322 1_3:+16314463 Msa0106710:CDS
TCTTCCTCCTTTGTTCTCAC+AGG 0.410719 1_3:-16317575 None:intergenic
AAGGTTTGTGAAAACGGTTC+GGG 0.410816 1_3:+16313408 Msa0106710:CDS
AGCAGATCGAGTTTCTCGTT+GGG 0.417105 1_3:+16317517 Msa0106710:CDS
TGGTGAGGAGGCCATTCTAT+TGG 0.417655 1_3:+16315215 Msa0106710:CDS
TTCAGTGAAGGCAGGAATCA+TGG 0.421582 1_3:-16317303 None:intergenic
GTCTGTCTCTGATAATGGTT+TGG 0.425968 1_3:+16314361 Msa0106710:CDS
ATATATGTAATAAATATGTA+AGG 0.426155 1_3:-16318460 None:intergenic
CAGTCTCCTCACTGTACTCC+TGG 0.426440 1_3:-16317237 None:intergenic
CTTATAGAGAGCCCTTTGTT+GGG 0.427096 1_3:-16317729 None:intergenic
CTTGTCAGAGTTTCAGAGCT+AGG 0.427351 1_3:-16318121 None:intergenic
GTCTGTCTCTGATAATGGTT+TGG 0.429116 1_3:+16314400 Msa0106710:CDS
GCAGATCTTAAAGGCTGAAC+AGG 0.431822 1_3:+16317601 Msa0106710:CDS
CAATCATTAGGTGTTTGCCT+TGG 0.433346 1_3:+16318426 Msa0106710:three_prime_UTR
GTCGAGTCTGTCTCTGATAA+TGG 0.436999 1_3:+16314395 Msa0106710:CDS
GATAATGCTGTCAAAGTTGA+AGG 0.440799 1_3:+16314593 Msa0106710:CDS
TTCAGTTGAAGCTGAAACTT+CGG 0.441108 1_3:+16314934 Msa0106710:CDS
CTTCACCAGGATTAAGCGTT+CGG 0.443035 1_3:-16317274 None:intergenic
TTCGATGCAAAGCAATCATT+AGG 0.446729 1_3:+16318414 Msa0106710:three_prime_UTR
TTCAGCTTCAATAGAGGTCT+CGG 0.449069 1_3:-16315047 None:intergenic
AGGAGACTGCAAACTTTAGA+TGG 0.449667 1_3:+16317251 Msa0106710:CDS
TAAACAATGCAATTTCTGTC+GGG 0.451272 1_3:+16315608 Msa0106710:CDS
GAAGGTTTGTGAAAACGGTT+CGG 0.455475 1_3:+16313407 Msa0106710:CDS
GGACAAGAGTGATCGTGAAT+TGG 0.455985 1_3:+16313614 Msa0106710:CDS
AGTTCAGAAAGGACTATTAC+CGG 0.459259 1_3:+16317207 Msa0106710:CDS
TTCGGTTGAAGCTGAAACTT+CGG 0.459559 1_3:+16315018 Msa0106710:CDS
TTCGACGGCGCCGACGTTGT+CGG 0.460767 1_3:-16313136 None:intergenic
TGAAAACGGTGGAGAATTGA+AGG 0.465384 1_3:+16313473 Msa0106710:CDS
TGTACCACAGCCTTGGAAGC+AGG 0.465437 1_3:-16317425 None:intergenic
AAGCGCAATGACAGCGGAGG+AGG 0.466090 1_3:+16313077 None:intergenic
GCCATTCTATTGGTTGGTCC+GGG 0.466811 1_3:+16315225 Msa0106710:CDS
AGCCGAACCTTCAACTGAAA+TGG 0.466877 1_3:+16314733 Msa0106710:CDS
ATTAGGTTCCTTCTCTTCAT+CGG 0.467184 1_3:-16317549 None:intergenic
TCACTTTCACCTTCATCAGC+AGG 0.469730 1_3:-16314509 None:intergenic
TGTCGTGGATGCACAGGACA+TGG 0.474717 1_3:+16315183 Msa0106710:CDS
TGAAGAAGAAGAAGTGAAGG+TGG 0.475188 1_3:+16313533 Msa0106710:CDS
GAGAAAAGAGCAAAGAAGAA+GGG 0.479788 1_3:+16318034 Msa0106710:CDS
GTATCTACATTAACATCAAC+CGG 0.484110 1_3:-16314257 None:intergenic
GAAGAGAAGGTTTGTGAAAA+CGG 0.489020 1_3:+16313402 Msa0106710:CDS
AAGAAGAAATATGAGGAAGA+AGG 0.489813 1_3:+16316110 Msa0106710:CDS
TCAAGTTACAGACTTTGAAA+AGG 0.489986 1_3:+16316198 Msa0106710:CDS
CACAGAGCATTGTAATGGTA+AGG 0.495770 1_3:+16313203 Msa0106710:CDS
CGATGTTGTTGTTGCTGACG+TGG 0.495959 1_3:+16313593 Msa0106710:CDS
CAAAGCTGAAGGAAATGAAA+AGG 0.496256 1_3:+16317645 Msa0106710:CDS
AAATGATTTGGATAAGGTAC+CGG 0.496598 1_3:+16314334 Msa0106710:CDS
GGAGCGCTTATGTATTGATC+AGG 0.496628 1_3:+16317047 Msa0106710:CDS
GATGGCCGAACGCTTAATCC+TGG 0.497200 1_3:+16317269 Msa0106710:CDS
TTAAACAATGCAATTTCTGT+CGG 0.499085 1_3:+16315607 Msa0106710:CDS
GAAGTTTGAGCTTCAACTGA+AGG 0.499445 1_3:-16315070 None:intergenic
GCTTTCGTGATCTTTAGATT+CGG 0.500492 1_3:-16313751 None:intergenic
CGAAATTCGAGCTGAAAGCC+TGG 0.501002 1_3:+16315333 Msa0106710:CDS
ACAAGAAGAGAGAGCTGCTA+GGG 0.501119 1_3:+16315528 Msa0106710:CDS
CTCTGATAATGGTTTGGCAG+AGG 0.502587 1_3:+16314406 Msa0106710:CDS
TCATGAAGAAGAAGAAGTGA+AGG 0.504739 1_3:+16313530 Msa0106710:CDS
AGTTGAACCAGCTGAGAAGA+AGG 0.506135 1_3:+16313839 Msa0106710:CDS
TCATTAGGTGTTTGCCTTGG+GGG 0.506788 1_3:+16318429 Msa0106710:three_prime_UTR
AGAAGAAGAAGTGAAGGTGG+AGG 0.510694 1_3:+16313536 Msa0106710:CDS
AGCTGAGCCTTCAACAGAAA+CGG 0.510854 1_3:+16314697 Msa0106710:CDS
AGAAGGTAATCAAGTGGATG+AGG 0.511050 1_3:+16316127 Msa0106710:CDS
CACCGATGTCGTGGATGCAC+AGG 0.512779 1_3:+16315177 Msa0106710:CDS
AACGGTTGATGTCGTTGAGC+GGG 0.518462 1_3:+16313380 Msa0106710:CDS
TTCACCTTCACCGCCTTCGA+CGG 0.520919 1_3:-16313151 None:intergenic
TACTCCACCTTTACCGTTAG+CGG 0.521641 1_3:-16313295 None:intergenic
TCAATGAGACTGCAAGAACT+AGG 0.522673 1_3:+16317000 Msa0106710:CDS
ACTATTACCGGTGCAATACC+AGG 0.523046 1_3:+16317219 Msa0106710:CDS
CAAATCCAAACGACAAGAGA+TGG 0.523125 1_3:+16315558 Msa0106710:CDS
AAAGGATGAACCTGCTTCCA+AGG 0.524649 1_3:+16317415 Msa0106710:CDS
TGCCGAAAAGGCCCAACAAA+GGG 0.525398 1_3:+16317718 Msa0106710:CDS
TAAGCTCTTTCAGTGAAGGC+AGG 0.525750 1_3:-16317311 None:intergenic
TAATGGTTTGGCAGAGGTTG+AGG 0.525866 1_3:+16314412 Msa0106710:CDS
ACCACGGTTGCGAATAGCCA+TGG 0.526287 1_3:-16318245 None:intergenic
TGTGAGAACAAAGGAGGAAG+AGG 0.526843 1_3:+16317577 Msa0106710:CDS
GAGGAGGCCATTCTATTGGT+TGG 0.527307 1_3:+16315219 Msa0106710:CDS
GTAATAAATTATTGTGATTG+TGG 0.527555 1_3:+16318641 Msa0106710:three_prime_UTR
GAATTTGTGATTGTTGAAAA+CGG 0.528063 1_3:+16313459 Msa0106710:CDS
GGCGCCGTCGAAGGCGGTGA+AGG 0.530333 1_3:+16313147 Msa0106710:CDS
TAAATTATTGTGATTGTGGT+GGG 0.531904 1_3:+16318645 Msa0106710:three_prime_UTR
GTTGAATTCGTCTCTTACCA+CGG 0.532422 1_3:-16318261 None:intergenic
TTAGAGGCAGAGTTTCATGC+TGG 0.534107 1_3:-16315769 None:intergenic
AGCAGCAAAGAAGAAATATG+AGG 0.534680 1_3:+16316103 Msa0106710:CDS
GGCTGAACAGGCGAGGAAGA+AGG 0.534987 1_3:+16317613 Msa0106710:CDS
TCTGCTGACTTCTTCTCTGA+AGG 0.536447 1_3:-16317500 None:intergenic
TAAAGGTGGAGTAGCGGTAG+AGG 0.536539 1_3:+16313305 Msa0106710:CDS
GGATGAAGTTGAACCTTCAA+AGG 0.536650 1_3:+16314658 Msa0106710:CDS
AGGAGCACAGGGGAAGAAAG+AGG 0.538909 1_3:+16317020 Msa0106710:CDS
GACGAATTCAACCATGGATG+TGG 0.539438 1_3:+16318272 Msa0106710:CDS
TTCTACGGATGCGGTGGAGG+TGG 0.540207 1_3:+16313704 Msa0106710:CDS
ATCATGGGAGGCTCTTCACC+AGG 0.540568 1_3:-16317287 None:intergenic
TTGTGATAATGCAGATGAGA+AGG 0.542927 1_3:+16314229 Msa0106710:CDS
CAGCAGATCGAGTTTCTCGT+TGG 0.543874 1_3:+16317516 Msa0106710:CDS
GAATTGGAAAGTAAAGTTGA+TGG 0.544173 1_3:+16313813 Msa0106710:CDS
TGATTCTACGGATGCGGTGG+AGG 0.544593 1_3:+16313701 Msa0106710:CDS
ACCTTCAACTGAAATGGCGG+TGG 0.546923 1_3:+16314739 Msa0106710:CDS
ACCTTCAACGGAACTAGCTG+AGG 0.550567 1_3:+16314775 Msa0106710:CDS
TGATAATCGCGATGTTGAAG+TGG 0.550723 1_3:+16313938 Msa0106710:CDS
ATTTCTGTTAACGGCAATGT+CGG 0.552571 1_3:+16313228 Msa0106710:CDS
TGAAACTCTGACAAGAACTC+TGG 0.552572 1_3:+16318129 Msa0106710:CDS
ACCCGGACCAACCAATAGAA+TGG 0.552856 1_3:-16315226 None:intergenic
ACTGCAAGAACTAGGAGCAC+AGG 0.554158 1_3:+16317008 Msa0106710:CDS
AAGCATTGAAGAGCAAACTA+AGG 0.554579 1_3:+16315901 Msa0106710:CDS
GAAAAGGCAATTGCATGAGA+AGG 0.554771 1_3:+16316214 Msa0106710:CDS
TGTCGTTGAGCGGGAAGAGA+AGG 0.555711 1_3:+16313389 Msa0106710:CDS
CTCTGATAATGGTTTGGAGA+AGG 0.557027 1_3:+16314367 Msa0106710:CDS
TTATCAGAGACAGACTCAAC+CGG 0.558273 1_3:-16314353 None:intergenic
TCAGTGAAGGCAGGAATCAT+GGG 0.559798 1_3:-16317302 None:intergenic
ATCATTAGGTGTTTGCCTTG+GGG 0.559846 1_3:+16318428 Msa0106710:three_prime_UTR
GAGTGAAGCCGAACCTTCAA+CGG 0.561675 1_3:+16314763 Msa0106710:CDS
CTTGATTATACTCTTTACGA+AGG 0.561786 1_3:-16315489 None:intergenic
GCAGATCGAGTTTCTCGTTG+GGG 0.561989 1_3:+16317518 Msa0106710:CDS
AAGATCACAGAGCATTGTAA+TGG 0.562627 1_3:+16313198 Msa0106710:CDS
TTTGTAAGCTCTTTCAGTGA+AGG 0.562971 1_3:-16317315 None:intergenic
AGCATCTGCCACTGATGCTG+TGG 0.563886 1_3:+16315144 Msa0106710:CDS
GCCTTCAACAGAAACGGCGG+TGG 0.564162 1_3:+16314703 Msa0106710:CDS
TGCTGATTCTACGGATGCGG+TGG 0.564790 1_3:+16313698 Msa0106710:CDS
GAAGTTTCAGCTTCAACCGA+AGG 0.565080 1_3:-16315016 None:intergenic
ACATGGGCTCTGAGGTGGTG+AGG 0.566686 1_3:+16315200 Msa0106710:CDS
AAACAATGCAATTTCTGTCG+GGG 0.569837 1_3:+16315609 Msa0106710:CDS
GAAGCTGATTCACTCACTCC+AGG 0.570410 1_3:-16313903 None:intergenic
GAATTCAACCATGGATGTGG+TGG 0.570422 1_3:+16318275 Msa0106710:CDS
TTGATTATACTCTTTACGAA+GGG 0.572186 1_3:-16315488 None:intergenic
GTTGACGCCGCTAACGGTAA+AGG 0.572603 1_3:+16313288 Msa0106710:CDS
GGAAGAAGAAGCAAAGCTGA+AGG 0.572743 1_3:+16317634 Msa0106710:CDS
TGAAGAAGTTGCTGATTCTA+CGG 0.573748 1_3:+16313689 Msa0106710:CDS
TGAACCTGCTTCCAAGGCTG+TGG 0.577224 1_3:+16317421 Msa0106710:CDS
TTAACAGTAACAGGTTCTGT+TGG 0.578014 1_3:-16317389 None:intergenic
TGGGCTCTGAGGTGGTGAGG+AGG 0.578182 1_3:+16315203 Msa0106710:CDS
TAATGGTTTGGAGAAGGTAC+CGG 0.578454 1_3:+16314373 Msa0106710:CDS
TTCAGTTGAAACTGAGACTG+CGG 0.578726 1_3:+16314898 Msa0106710:CDS
GGACGAGTCCGATGAAGAGA+AGG 0.579016 1_3:+16317541 Msa0106710:CDS
ATAAATTATTGTGATTGTGG+TGG 0.579033 1_3:+16318644 Msa0106710:three_prime_UTR
TGCCGATAACACTCGTCAAG+AGG 0.579319 1_3:+16316169 Msa0106710:CDS
GCAGTCTCAGTTTCAACTGA+AGG 0.579813 1_3:-16314896 None:intergenic
CTGCAAGAACTAGGAGCACA+GGG 0.581459 1_3:+16317009 Msa0106710:CDS
GACAACGTCGGCGCCGTCGA+AGG 0.581779 1_3:+16313138 Msa0106710:CDS
TCAATTCACAAAACAAAGCA+AGG 0.582239 1_3:+16318210 Msa0106710:CDS
TTGTCATCATCATCGTATCT+CGG 0.583706 1_3:-16315250 None:intergenic
ACTTTGACAGCATTATCTGA+AGG 0.585040 1_3:-16314587 None:intergenic
GGAAATTGAGAAAGCTAAGG+AGG 0.585444 1_3:+16317673 Msa0106710:CDS
CATCATCGTATCTCGGAACC+CGG 0.585579 1_3:-16315243 None:intergenic
TGCAGATGAGAAGGAAACTC+CGG 0.585869 1_3:+16314238 Msa0106710:CDS
GAAGAATGACGAGTTCAGAA+AGG 0.589656 1_3:+16317196 Msa0106710:CDS
TGCATCTGCCACCGATGTCG+TGG 0.590159 1_3:+16315168 Msa0106710:CDS
TGAAGGTTCAGCTTCAATAG+AGG 0.590769 1_3:-16315053 None:intergenic
AACTTCTCTATCGACAACAT+TGG 0.592698 1_3:-16314870 None:intergenic
ACCTCAGACGTAACAACAGA+AGG 0.593177 1_3:-16314533 None:intergenic
ACAGGGGAAGAAAGAGGACG+TGG 0.593488 1_3:+16317026 Msa0106710:CDS
CTGTACTCCTGGTATTGCAC+CGG 0.594714 1_3:-16317226 None:intergenic
GTTACCGTTGACGCCGCTAA+CGG 0.594903 1_3:+16313282 Msa0106710:CDS
GCTTTGAAATGAAGATCTCA+AGG 0.595326 1_3:-16318353 None:intergenic
ATCAGCAACTTCTTCAACAG+CGG 0.597246 1_3:-16313682 None:intergenic
CCACGGTTGCGAATAGCCAT+GGG 0.597835 1_3:-16318244 None:intergenic
ATTAGAACCCACCACATCCA+TGG 0.597877 1_3:-16318283 None:intergenic
GTCGTGGATGCACAGGACAT+GGG 0.598942 1_3:+16315184 Msa0106710:CDS
GAAGCTCAAACTTCAGCTGA+AGG 0.599070 1_3:+16315079 Msa0106710:CDS
TACAAGAAGAGAGAGCTGCT+AGG 0.599500 1_3:+16315527 Msa0106710:CDS
CTGTGCATCCACGACATCGG+TGG 0.599757 1_3:-16315176 None:intergenic
TGATGCTGAAGTGAGTGAAT+CGG 0.600354 1_3:+16314169 Msa0106710:CDS
TTCAGGAAGCGCAATGACAG+CGG 0.600797 1_3:+16313071 None:intergenic
GGAGGATCAAAACGGTGTCG+TGG 0.601385 1_3:+16313554 Msa0106710:CDS
AGTTGCTGATTCTACGGATG+CGG 0.604860 1_3:+16313695 Msa0106710:CDS
TGAGGAAGAAGGTAATCAAG+TGG 0.607579 1_3:+16316121 Msa0106710:CDS
TTCTAACGGTGAAACGACAA+CGG 0.609310 1_3:+16313362 Msa0106710:CDS
TGAGGTGAGTGAATGCATCA+AGG 0.610932 1_3:+16314430 Msa0106710:CDS
TATATGTAATAAATATGTAA+GGG 0.611508 1_3:-16318459 None:intergenic
TACTCAAAATGATTTAGAGA+AGG 0.612379 1_3:+16314277 Msa0106710:CDS
GAATTGGAAGGTGTTGAGAA+CGG 0.614129 1_3:+16313630 Msa0106710:CDS
ATGCCGAAAAGGCCCAACAA+AGG 0.614179 1_3:+16317717 Msa0106710:CDS
ACATGCTCTTCAACAAGTAG+AGG 0.615781 1_3:+16315291 Msa0106710:CDS
TGCACAGGACATGGGCTCTG+AGG 0.616154 1_3:+16315192 Msa0106710:CDS
AGTTACTACTGAAGATGCTG+TGG 0.616914 1_3:+16318069 Msa0106710:CDS
ACCTGTTACTGTTAATACAA+AGG 0.617247 1_3:+16317397 Msa0106710:CDS
CAGATCGAGTTTCTCGTTGG+GGG 0.617393 1_3:+16317519 Msa0106710:CDS
GTTATTTCCCATATAAAACA+AGG 0.618146 1_3:-16318326 None:intergenic
TGTCGGGGATATAGATAGCA+AGG 0.619863 1_3:+16315624 Msa0106710:CDS
GTCCTGTGCATCCACGACAT+CGG 0.620547 1_3:-16315179 None:intergenic
AGATGCATCCACAGCATCAG+TGG 0.621066 1_3:-16315152 None:intergenic
ACCTTCTGTTGTTACGTCTG+AGG 0.621309 1_3:+16314532 Msa0106710:CDS
ACACCAGAACCTGCTGATGA+AGG 0.621455 1_3:+16314500 Msa0106710:CDS
TAGCAACGAATCTGAAGTGA+CGG 0.622394 1_3:+16313332 Msa0106710:CDS
AAGAGTGATCGTGAATTGGA+AGG 0.623827 1_3:+16313618 Msa0106710:CDS
AAATCTGCAACATCAACAGA+AGG 0.624188 1_3:-16314842 None:intergenic
AAGCTAAGGAGGCACTGCAA+AGG 0.626684 1_3:+16317684 Msa0106710:CDS
AGAGGAAATTGAGAAAGCTA+AGG 0.627172 1_3:+16317670 Msa0106710:CDS
AACGATCGGATCTGAAAGAA+CGG 0.627370 1_3:-16313262 None:intergenic
AACGTCGGCGCCGTCGAAGG+CGG 0.628326 1_3:+16313141 Msa0106710:CDS
GTGACGGTTATGAATTCTAA+CGG 0.628599 1_3:+16313348 Msa0106710:CDS
GTGAAGGTGGAGGATCAAAA+CGG 0.629161 1_3:+16313546 Msa0106710:CDS
TTTACCGTTAGCGGCGTCAA+CGG 0.629253 1_3:-16313286 None:intergenic
CCCATGGCTATTCGCAACCG+TGG 0.629628 1_3:+16318244 Msa0106710:CDS
GCGGCGTCAACGGTAACGAT+CGG 0.631102 1_3:-16313276 None:intergenic
CAACGGTTGATGTCGTTGAG+CGG 0.634074 1_3:+16313379 Msa0106710:CDS
GCTTAGAAGTAATCTCCTGA+AGG 0.634976 1_3:+16316064 Msa0106710:CDS
AGATCGAGTTTCTCGTTGGG+GGG 0.635906 1_3:+16317520 Msa0106710:CDS
AGGAAGCGCAATGACAGCGG+AGG 0.636017 1_3:+16313074 None:intergenic
TTTGTGATTGTTGAAAACGG+TGG 0.637026 1_3:+16313462 Msa0106710:CDS
GGTGGTTGATTCTGATGCGG+TGG 0.639793 1_3:+16313722 Msa0106710:CDS
TCTTAAAGGCTGAACAGGCG+AGG 0.640573 1_3:+16317606 Msa0106710:CDS
GAACGGAGTTAAAGAGATCG+AGG 0.641304 1_3:+16313647 Msa0106710:CDS
AGAATTGAAGGAATGTGCGG+TGG 0.642858 1_3:+16313485 Msa0106710:CDS
GGATGTTGAATTAGAAACCG+TGG 0.645557 1_3:+16314145 Msa0106710:CDS
AATGTGATTCCTGTTGATGT+CGG 0.646932 1_3:+16314455 Msa0106710:CDS
ATTGTTTAATCTATTCATGG+TGG 0.647633 1_3:-16315593 None:intergenic
GAAGGAAATGAAAAGGCTAG+AGG 0.651290 1_3:+16317652 Msa0106710:CDS
CAAGGTAAAAGCTTTACCCA+TGG 0.652268 1_3:+16318228 Msa0106710:CDS
AAACTATTGAAGCAAAATCG+TGG 0.653029 1_3:+16315821 Msa0106710:CDS
AAGTGGATGAGGTTATGGCT+CGG 0.657227 1_3:+16316138 Msa0106710:CDS
AATTCAACCATGGATGTGGT+GGG 0.658178 1_3:+16318276 Msa0106710:CDS
TTATCAGAGACAGACTCGAC+CGG 0.663571 1_3:-16314392 None:intergenic
TGAACCTGTGAGAACAAAGG+AGG 0.664380 1_3:+16317571 Msa0106710:CDS
GACGCCGCTAACGGTAAAGG+TGG 0.666548 1_3:+16313291 Msa0106710:CDS
TAATGAACCTGTGAGAACAA+AGG 0.667584 1_3:+16317568 Msa0106710:CDS
CGAACCTTCAACTGAAATGG+CGG 0.668470 1_3:+16314736 Msa0106710:CDS
GGAGGTGGTTGATTCTGATG+CGG 0.669215 1_3:+16313719 Msa0106710:CDS
CCTTCAACGGAACTAGCTGA+GGG 0.669399 1_3:+16314776 Msa0106710:CDS
TCCGATAACACCGACAACGT+CGG 0.672245 1_3:+16313126 Msa0106710:CDS
TTGATGTCGGCGAATCGGAG+AGG 0.675225 1_3:+16314468 Msa0106710:CDS
CGGAGTTAAAGAGATCGAGG+AGG 0.677412 1_3:+16313650 Msa0106710:CDS
ACTCACTTCAGCATCAACCA+CGG 0.682834 1_3:-16314162 None:intergenic
GTGAAGGCAGGAATCATGGG+AGG 0.683078 1_3:-16317299 None:intergenic
GAACAATGTAGTGCAGAGTG+AGG 0.684611 1_3:+16314814 Msa0106710:CDS
TCAGCTTGAGAAACCAGTTG+AGG 0.692737 1_3:+16318162 Msa0106710:CDS
TAACGGTAAAGGTGGAGTAG+CGG 0.700879 1_3:+16313299 Msa0106710:CDS
ACAGGACATGGGCTCTGAGG+TGG 0.700930 1_3:+16315195 Msa0106710:CDS
GTAAGAGACGAATTCAACCA+TGG 0.703137 1_3:+16318266 Msa0106710:CDS
TGAGCCTTCAACAGAAACGG+CGG 0.719702 1_3:+16314700 Msa0106710:CDS
TTTCAGCTCGAATTTCGTCG+CGG 0.729931 1_3:-16315327 None:intergenic
GCAATACCAGGAGTACAGTG+AGG 0.739249 1_3:+16317231 Msa0106710:CDS
TGGAGAATTGAAGGAATGTG+CGG 0.744091 1_3:+16313482 Msa0106710:CDS
TGCAAGAACTAGGAGCACAG+GGG 0.777871 1_3:+16317010 Msa0106710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAGTTG+AGG - chr1_3:16316759-16316778 None:intergenic 10.0%
!! TTAAACTAAAATTCATTTAA+CGG + chr1_3:16317959-16317978 Msa0106710:intron 10.0%
!! TATATGTAATAAATATGTAA+GGG - chr1_3:16318462-16318481 None:intergenic 10.0%
!! ATATATGTAATAAATATGTA+AGG - chr1_3:16318463-16318482 None:intergenic 10.0%
!! TAATTTATTACCATAATAAT+TGG - chr1_3:16318632-16318651 None:intergenic 10.0%
!! TACAATTGTTGAAAATGATT+TGG + chr1_3:16314322-16314341 Msa0106710:CDS 20.0%
!!! TAGAATGTTATTAGTTTGAT+TGG + chr1_3:16315386-16315405 Msa0106710:intron 20.0%
!!! TTTGAATGATTAATTTGTTC+AGG + chr1_3:16315465-16315484 Msa0106710:intron 20.0%
!! TTAGTTAATACAAAAGATAC+GGG - chr1_3:16315980-16315999 None:intergenic 20.0%
!! GTTAGTTAATACAAAAGATA+CGG - chr1_3:16315981-16316000 None:intergenic 20.0%
!! AAAAAAGGAATGAAATAGAT+AGG - chr1_3:16316254-16316273 None:intergenic 20.0%
!!! AATCTATTCTTTGATTGTTT+TGG + chr1_3:16316341-16316360 Msa0106710:intron 20.0%
!! TTAAATTCTTTAATCCACAA+AGG - chr1_3:16316627-16316646 None:intergenic 20.0%
!! GATTAAAGAATTTAATGCTT+AGG + chr1_3:16316632-16316651 Msa0106710:intron 20.0%
!! CAGTATAAAAATAGTTATCA+TGG - chr1_3:16317919-16317938 None:intergenic 20.0%
!! TAGAAGCAAAAAAATTGTAA+AGG - chr1_3:16318511-16318530 None:intergenic 20.0%
!!! ATTTTTTTGCTTCTAGTTTT+TGG + chr1_3:16318516-16318535 Msa0106710:three_prime_UTR 20.0%
!! GTAATAAATTATTGTGATTG+TGG + chr1_3:16318641-16318660 Msa0106710:three_prime_UTR 20.0%
! GAATTTGTGATTGTTGAAAA+CGG + chr1_3:16313459-16313478 Msa0106710:CDS 25.0%
! TGAAAATCTTGATGTTGAAT+TGG + chr1_3:16313866-16313885 Msa0106710:CDS 25.0%
! TACTCAAAATGATTTAGAGA+AGG + chr1_3:16314277-16314296 Msa0106710:CDS 25.0%
!! TGTTGAAAATGATTTGGATA+AGG + chr1_3:16314328-16314347 Msa0106710:CDS 25.0%
! TGAAGTTTCAATTGATGTTT+CGG - chr1_3:16314966-16314985 None:intergenic 25.0%
! TTCAGCTTCAATTGAAATTT+CGG - chr1_3:16314996-16315015 None:intergenic 25.0%
! TTGATTATACTCTTTACGAA+GGG - chr1_3:16315491-16315510 None:intergenic 25.0%
! ATTGTTTAATCTATTCATGG+TGG - chr1_3:16315596-16315615 None:intergenic 25.0%
! TGCATTGTTTAATCTATTCA+TGG - chr1_3:16315599-16315618 None:intergenic 25.0%
! TTAAACAATGCAATTTCTGT+CGG + chr1_3:16315607-16315626 Msa0106710:CDS 25.0%
! CAAATTGTGATAAATATCTC+TGG - chr1_3:16315670-16315689 None:intergenic 25.0%
!! TTATTTTCAGATTCGAAACA+TGG + chr1_3:16315736-16315755 Msa0106710:intron 25.0%
!!! AATTGCTTTTCTTCTTTTAG+AGG - chr1_3:16315788-16315807 None:intergenic 25.0%
! TTTGCTTCAATAGTTTGATT+TGG - chr1_3:16315817-16315836 None:intergenic 25.0%
! GTCTAATATTATTGCAAAAC+AGG + chr1_3:16315850-16315869 Msa0106710:CDS 25.0%
! CATTATATTTCCCGAATTAA+TGG + chr1_3:16315945-16315964 Msa0106710:intron 25.0%
! GTAGTTAATTCCATTAATTC+GGG - chr1_3:16315958-16315977 None:intergenic 25.0%
! GGTAGTTAATTCCATTAATT+CGG - chr1_3:16315959-16315978 None:intergenic 25.0%
!!! TACATGGTTTTAATTTCCTT+AGG - chr1_3:16316505-16316524 None:intergenic 25.0%
! AAAATATTATCTGCTGAACT+AGG + chr1_3:16316792-16316811 Msa0106710:intron 25.0%
!! TGTACAGAGCAAATATTTTT+GGG + chr1_3:16316963-16316982 Msa0106710:intron 25.0%
!! TACTCGTTTCAAGTATAAAA+AGG - chr1_3:16317077-16317096 None:intergenic 25.0%
! GGTCAATTATCACATTTAAT+GGG - chr1_3:16317898-16317917 None:intergenic 25.0%
! TGGTCAATTATCACATTTAA+TGG - chr1_3:16317899-16317918 None:intergenic 25.0%
!! GTTATTTCCCATATAAAACA+AGG - chr1_3:16318329-16318348 None:intergenic 25.0%
!! ACATATAGAAGCAATTCTTT+TGG + chr1_3:16318483-16318502 Msa0106710:three_prime_UTR 25.0%
! ATAAATTATTGTGATTGTGG+TGG + chr1_3:16318644-16318663 Msa0106710:three_prime_UTR 25.0%
GGTAAGGAAATTTCTGTTAA+CGG + chr1_3:16313219-16313238 Msa0106710:CDS 30.0%
GAATTGGAAAGTAAAGTTGA+TGG + chr1_3:16313813-16313832 Msa0106710:CDS 30.0%
TGAAAATCGTGATGTTCAAT+TGG + chr1_3:16314070-16314089 Msa0106710:CDS 30.0%
CAGCTGAGAAAAATGAAATT+CGG + chr1_3:16314123-16314142 Msa0106710:CDS 30.0%
AGCTGAGAAAAATGAAATTC+GGG + chr1_3:16314124-16314143 Msa0106710:CDS 30.0%
! GAAATTCCAGTTGATGTTAA+TGG + chr1_3:16314203-16314222 Msa0106710:CDS 30.0%
GTATCTACATTAACATCAAC+CGG - chr1_3:16314260-16314279 None:intergenic 30.0%
! AAATGATTTGGATAAGGTAC+CGG + chr1_3:16314334-16314353 Msa0106710:CDS 30.0%
AGATTAAAAACGATGCAGTT+GGG + chr1_3:16314636-16314655 Msa0106710:CDS 30.0%
CTTGATTATACTCTTTACGA+AGG - chr1_3:16315492-16315511 None:intergenic 30.0%
TAAACAATGCAATTTCTGTC+GGG + chr1_3:16315608-16315627 Msa0106710:CDS 30.0%
GAGATGTTGATACAACAAAA+AGG - chr1_3:16315704-16315723 None:intergenic 30.0%
AAACTATTGAAGCAAAATCG+TGG + chr1_3:16315821-16315840 Msa0106710:CDS 30.0%
AAGAAGAAATATGAGGAAGA+AGG + chr1_3:16316110-16316129 Msa0106710:CDS 30.0%
! TCAAGTTACAGACTTTGAAA+AGG + chr1_3:16316198-16316217 Msa0106710:CDS 30.0%
TTGATACTAATGCCAAATCT+AGG + chr1_3:16316422-16316441 Msa0106710:intron 30.0%
TGATACTAATGCCAAATCTA+GGG + chr1_3:16316423-16316442 Msa0106710:intron 30.0%
GTTGCTTGTAGAAATTTAGA+TGG + chr1_3:16316479-16316498 Msa0106710:intron 30.0%
AGTATTACTTCATGAGTACA+TGG - chr1_3:16316521-16316540 None:intergenic 30.0%
CTGAAAATGAGATATCCATT+GGG - chr1_3:16316667-16316686 None:intergenic 30.0%
AATATTTGCTCTGTACAGTA+TGG - chr1_3:16316960-16316979 None:intergenic 30.0%
! CTGTACAGAGCAAATATTTT+TGG + chr1_3:16316962-16316981 Msa0106710:intron 30.0%
!!! TCGATTTCTTTTGTTGTTCA+GGG - chr1_3:16317367-16317386 None:intergenic 30.0%
!!! ATCGATTTCTTTTGTTGTTC+AGG - chr1_3:16317368-16317387 None:intergenic 30.0%
ACCTGTTACTGTTAATACAA+AGG + chr1_3:16317397-16317416 Msa0106710:CDS 30.0%
TCCTTTGTATTAACAGTAAC+AGG - chr1_3:16317401-16317420 None:intergenic 30.0%
!!! CTTTGTTTTGTGAATTGAGA+TGG - chr1_3:16318208-16318227 None:intergenic 30.0%
TCAATTCACAAAACAAAGCA+AGG + chr1_3:16318210-16318229 Msa0106710:CDS 30.0%
!!! TATTGCTGCCTTGTTTTATA+TGG + chr1_3:16318318-16318337 Msa0106710:CDS 30.0%
!!! ATTGCTGCCTTGTTTTATAT+GGG + chr1_3:16318319-16318338 Msa0106710:CDS 30.0%
AGATCTTCATTTCAAAGCTT+TGG + chr1_3:16318358-16318377 Msa0106710:CDS 30.0%
!!! TTTCAAAGCTTTGGTTTTTG+AGG + chr1_3:16318367-16318386 Msa0106710:CDS 30.0%
!!! CGAAGCAAGTTTTTTAACTT+TGG - chr1_3:16318398-16318417 None:intergenic 30.0%
!! GTTTCTGATGTGATTTTAAC+TGG + chr1_3:16318590-16318609 Msa0106710:three_prime_UTR 30.0%
!! AAGATCACAGAGCATTGTAA+TGG + chr1_3:16313198-16313217 Msa0106710:CDS 35.0%
ATTTCTGTTAACGGCAATGT+CGG + chr1_3:16313228-16313247 Msa0106710:CDS 35.0%
GTGACGGTTATGAATTCTAA+CGG + chr1_3:16313348-16313367 Msa0106710:CDS 35.0%
GAAGAGAAGGTTTGTGAAAA+CGG + chr1_3:16313402-16313421 Msa0106710:CDS 35.0%
TTTGTGATTGTTGAAAACGG+TGG + chr1_3:16313462-16313481 Msa0106710:CDS 35.0%
TCATGAAGAAGAAGAAGTGA+AGG + chr1_3:16313530-16313549 Msa0106710:CDS 35.0%
!! TGAAGAAGTTGCTGATTCTA+CGG + chr1_3:16313689-16313708 Msa0106710:CDS 35.0%
GCTTTCGTGATCTTTAGATT+CGG - chr1_3:16313754-16313773 None:intergenic 35.0%
! TCACGAAAGCGAAAATCTTT+TGG + chr1_3:16313764-16313783 Msa0106710:CDS 35.0%
! GAAAGCGAAAATCTTTTGGA+TGG + chr1_3:16313768-16313787 Msa0106710:CDS 35.0%
CGAAATTCGTGATGTTGAAT+TGG + chr1_3:16313797-16313816 Msa0106710:CDS 35.0%
CAAACTCCATTAACATCAAC+TGG - chr1_3:16314212-16314231 None:intergenic 35.0%
! TTGTGATAATGCAGATGAGA+AGG + chr1_3:16314229-16314248 Msa0106710:CDS 35.0%
AATGTGATTCCTGTTGATGT+CGG + chr1_3:16314455-16314474 Msa0106710:CDS 35.0%
TGAGGTGAGAGACATTAAAA+AGG + chr1_3:16314550-16314569 Msa0106710:CDS 35.0%
AGACATTAAAAAGGAGAGTG+AGG + chr1_3:16314559-16314578 Msa0106710:CDS 35.0%
ACTTTGACAGCATTATCTGA+AGG - chr1_3:16314590-16314609 None:intergenic 35.0%
GATAATGCTGTCAAAGTTGA+AGG + chr1_3:16314593-16314612 Msa0106710:CDS 35.0%
GAGATTAAAAACGATGCAGT+TGG + chr1_3:16314635-16314654 Msa0106710:CDS 35.0%
GATTAAAAACGATGCAGTTG+GGG + chr1_3:16314637-16314656 Msa0106710:CDS 35.0%
AAATCTGCAACATCAACAGA+AGG - chr1_3:16314845-16314864 None:intergenic 35.0%
AACTTCTCTATCGACAACAT+TGG - chr1_3:16314873-16314892 None:intergenic 35.0%
TTCAGCTTCAACTGAAGTTT+CGG - chr1_3:16314930-16314949 None:intergenic 35.0%
TTCAGTTGAAGCTGAAACTT+CGG + chr1_3:16314934-16314953 Msa0106710:CDS 35.0%
TTCAATTGAAGCTGAACCTT+CGG + chr1_3:16315000-16315019 Msa0106710:CDS 35.0%
TTGTCATCATCATCGTATCT+CGG - chr1_3:16315253-16315272 None:intergenic 35.0%
AAACAATGCAATTTCTGTCG+GGG + chr1_3:16315609-16315628 Msa0106710:CDS 35.0%
!! AAGCATTGAAGAGCAAACTA+AGG + chr1_3:16315901-16315920 Msa0106710:CDS 35.0%
AGCAGCAAAGAAGAAATATG+AGG + chr1_3:16316103-16316122 Msa0106710:CDS 35.0%
TAATCAAGTGGATGAGGTTA+TGG + chr1_3:16316133-16316152 Msa0106710:CDS 35.0%
GTATTTCCCTCAAGGAAAAA+GGG - chr1_3:16316282-16316301 None:intergenic 35.0%
AGTATTTCCCTCAAGGAAAA+AGG - chr1_3:16316283-16316302 None:intergenic 35.0%
TTTCTACAGTATTTCCCTCA+AGG - chr1_3:16316290-16316309 None:intergenic 35.0%
TTGAGGGAAATACTGTAGAA+AGG + chr1_3:16316289-16316308 Msa0106710:intron 35.0%
GATACTAATGCCAAATCTAG+GGG + chr1_3:16316424-16316443 Msa0106710:intron 35.0%
! GTTCCAATACTAGCTTATAC+TGG + chr1_3:16316452-16316471 Msa0106710:intron 35.0%
AGACCAGTATAAGCTAGTAT+TGG - chr1_3:16316458-16316477 None:intergenic 35.0%
GTAGAAATTTAGATGGCCTA+AGG + chr1_3:16316486-16316505 Msa0106710:intron 35.0%
TACTCGATTATTGAGTAGCT+AGG + chr1_3:16316537-16316556 Msa0106710:intron 35.0%
ACTCGATTATTGAGTAGCTA+GGG + chr1_3:16316538-16316557 Msa0106710:intron 35.0%
!! AAAAGGAATATGCTGCTTTG+TGG + chr1_3:16316562-16316581 Msa0106710:intron 35.0%
CCTGAAAATGAGATATCCAT+TGG - chr1_3:16316668-16316687 None:intergenic 35.0%
! CCAATGGATATCTCATTTTC+AGG + chr1_3:16316665-16316684 Msa0106710:intron 35.0%
TCAGGATTACTGTATCATCT+AGG + chr1_3:16316683-16316702 Msa0106710:intron 35.0%
ACAGTATGGTGAACAAAACT+AGG - chr1_3:16316946-16316965 None:intergenic 35.0%
TCTTACTGCGCTGTATTATT+AGG + chr1_3:16317110-16317129 Msa0106710:intron 35.0%
TAGGCGAATAAACTTGAATG+TGG + chr1_3:16317129-16317148 Msa0106710:intron 35.0%
AGTTCAGAAAGGACTATTAC+CGG + chr1_3:16317207-16317226 Msa0106710:CDS 35.0%
TTTGTAAGCTCTTTCAGTGA+AGG - chr1_3:16317318-16317337 None:intergenic 35.0%
!!! CGATTTCTTTTGTTGTTCAG+GGG - chr1_3:16317366-16317385 None:intergenic 35.0%
TTAACAGTAACAGGTTCTGT+TGG - chr1_3:16317392-16317411 None:intergenic 35.0%
! TTACTTGTCTGGCTTATTTC+AGG - chr1_3:16317455-16317474 None:intergenic 35.0%
!!! GCTTTTTAGGTTTACTTGTC+TGG - chr1_3:16317466-16317485 None:intergenic 35.0%
ATTAGGTTCCTTCTCTTCAT+CGG - chr1_3:16317552-16317571 None:intergenic 35.0%
TTTGTTCTCACAGGTTCATT+AGG - chr1_3:16317569-16317588 None:intergenic 35.0%
TAATGAACCTGTGAGAACAA+AGG + chr1_3:16317568-16317587 Msa0106710:CDS 35.0%
CAAAGCTGAAGGAAATGAAA+AGG + chr1_3:16317645-16317664 Msa0106710:CDS 35.0%
AGAGGAAATTGAGAAAGCTA+AGG + chr1_3:16317670-16317689 Msa0106710:CDS 35.0%
GAGAAAAGAGCAAAGAAGAA+GGG + chr1_3:16318034-16318053 Msa0106710:CDS 35.0%
!! GCTTTGAAATGAAGATCTCA+AGG - chr1_3:16318356-16318375 None:intergenic 35.0%
TTCGATGCAAAGCAATCATT+AGG + chr1_3:16318414-16318433 Msa0106710:three_prime_UTR 35.0%
AATCATTAGGTGTTTGCCTT+GGG + chr1_3:16318427-16318446 Msa0106710:three_prime_UTR 35.0%
!! CACAGAGCATTGTAATGGTA+AGG + chr1_3:16313203-16313222 Msa0106710:CDS 40.0%
AACGATCGGATCTGAAAGAA+CGG - chr1_3:16313265-16313284 None:intergenic 40.0%
! TAGCAACGAATCTGAAGTGA+CGG + chr1_3:16313332-16313351 Msa0106710:CDS 40.0%
TTCTAACGGTGAAACGACAA+CGG + chr1_3:16313362-16313381 Msa0106710:CDS 40.0%
GAAGGTTTGTGAAAACGGTT+CGG + chr1_3:16313407-16313426 Msa0106710:CDS 40.0%
AAGGTTTGTGAAAACGGTTC+GGG + chr1_3:16313408-16313427 Msa0106710:CDS 40.0%
TGAAAACGGTGGAGAATTGA+AGG + chr1_3:16313473-16313492 Msa0106710:CDS 40.0%
TGGAGAATTGAAGGAATGTG+CGG + chr1_3:16313482-16313501 Msa0106710:CDS 40.0%
TGAAGAAGAAGAAGTGAAGG+TGG + chr1_3:16313533-16313552 Msa0106710:CDS 40.0%
AAGAGTGATCGTGAATTGGA+AGG + chr1_3:16313618-16313637 Msa0106710:CDS 40.0%
!! GAATTGGAAGGTGTTGAGAA+CGG + chr1_3:16313630-16313649 Msa0106710:CDS 40.0%
ATCAGCAACTTCTTCAACAG+CGG - chr1_3:16313685-16313704 None:intergenic 40.0%
! TCATTTTCCTTCTTCTCAGC+TGG - chr1_3:16313849-16313868 None:intergenic 40.0%
TGATAATCGCGATGTTGAAG+TGG + chr1_3:16313938-16313957 Msa0106710:CDS 40.0%
GGATGTTGAATTAGAAACCG+TGG + chr1_3:16314145-16314164 Msa0106710:CDS 40.0%
TGATGCTGAAGTGAGTGAAT+CGG + chr1_3:16314169-16314188 Msa0106710:CDS 40.0%
TTATCAGAGACAGACTCAAC+CGG - chr1_3:16314356-16314375 None:intergenic 40.0%
GTTGAGTCTGTCTCTGATAA+TGG + chr1_3:16314356-16314375 Msa0106710:CDS 40.0%
!! GTCTGTCTCTGATAATGGTT+TGG + chr1_3:16314361-16314380 Msa0106710:CDS 40.0%
!! CTCTGATAATGGTTTGGAGA+AGG + chr1_3:16314367-16314386 Msa0106710:CDS 40.0%
! TAATGGTTTGGAGAAGGTAC+CGG + chr1_3:16314373-16314392 Msa0106710:CDS 40.0%
!! GTCTGTCTCTGATAATGGTT+TGG + chr1_3:16314361-16314380 Msa0106710:CDS 40.0%
GGATGAAGTTGAACCTTCAA+AGG + chr1_3:16314658-16314677 Msa0106710:CDS 40.0%
TTCAGTTGAAACTGAGACTG+CGG + chr1_3:16314898-16314917 Msa0106710:CDS 40.0%
TTCGGTTGAAGCTGAAACTT+CGG + chr1_3:16315018-16315037 Msa0106710:CDS 40.0%
TTCAGCTTCAATAGAGGTCT+CGG - chr1_3:16315050-16315069 None:intergenic 40.0%
TGAAGGTTCAGCTTCAATAG+AGG - chr1_3:16315056-16315075 None:intergenic 40.0%
GAAGTTTGAGCTTCAACTGA+AGG - chr1_3:16315073-16315092 None:intergenic 40.0%
ACATGCTCTTCAACAAGTAG+AGG + chr1_3:16315291-16315310 Msa0106710:CDS 40.0%
!! AACTGCTTACCTTTTTAGCC+AGG - chr1_3:16315354-16315373 None:intergenic 40.0%
CAAATCCAAACGACAAGAGA+TGG + chr1_3:16315558-16315577 Msa0106710:CDS 40.0%
TGAATCCATCTCTTGTCGTT+TGG - chr1_3:16315566-16315585 None:intergenic 40.0%
! TTCAGCGATTACAGCTTTTG+AGG + chr1_3:16316027-16316046 Msa0106710:intron 40.0%
!! ACAGCTTTTGAGGAAGGAAT+TGG + chr1_3:16316037-16316056 Msa0106710:CDS 40.0%
GCTTAGAAGTAATCTCCTGA+AGG + chr1_3:16316064-16316083 Msa0106710:CDS 40.0%
TAGTTATTGCTTCTGCCTTC+AGG - chr1_3:16316082-16316101 None:intergenic 40.0%
TGAGGAAGAAGGTAATCAAG+TGG + chr1_3:16316121-16316140 Msa0106710:CDS 40.0%
AGAAGGTAATCAAGTGGATG+AGG + chr1_3:16316127-16316146 Msa0106710:CDS 40.0%
GAAAAGGCAATTGCATGAGA+AGG + chr1_3:16316214-16316233 Msa0106710:CDS 40.0%
GGAAAAAGGGCGGAAAAAAA+AGG - chr1_3:16316269-16316288 None:intergenic 40.0%
TTGAGTGCTTATTCACAACG+AGG + chr1_3:16316381-16316400 Msa0106710:intron 40.0%
TATTGAGTAGCTAGGGCAAA+AGG + chr1_3:16316545-16316564 Msa0106710:intron 40.0%
! GCATTTGCTGCGTACTTTAA+TGG - chr1_3:16316598-16316617 None:intergenic 40.0%
AGGCTTACATGAATAGTGTC+TGG + chr1_3:16316703-16316722 Msa0106710:intron 40.0%
!!! CTGGAGGATGATGTGTTTTT+TGG + chr1_3:16316820-16316839 Msa0106710:intron 40.0%
TCAATGAGACTGCAAGAACT+AGG + chr1_3:16317000-16317019 Msa0106710:CDS 40.0%
!! GCACTTACCAATTAGCTTTC+AGG + chr1_3:16317151-16317170 Msa0106710:intron 40.0%
GAAGAATGACGAGTTCAGAA+AGG + chr1_3:16317196-16317215 Msa0106710:CDS 40.0%
AGGAGACTGCAAACTTTAGA+TGG + chr1_3:16317251-16317270 Msa0106710:CDS 40.0%
! GCAAGTTTTGCAGGCTTTTT+AGG - chr1_3:16317479-16317498 None:intergenic 40.0%
GAAGGAAATGAAAAGGCTAG+AGG + chr1_3:16317652-16317671 Msa0106710:CDS 40.0%
GGAAATTGAGAAAGCTAAGG+AGG + chr1_3:16317673-16317692 Msa0106710:CDS 40.0%
! GAAAAAGCGTAATGCCGAAA+AGG + chr1_3:16317706-16317725 Msa0106710:CDS 40.0%
CTTATAGAGAGCCCTTTGTT+GGG - chr1_3:16317732-16317751 None:intergenic 40.0%
AGAAGCTGAGCAAAAAGAGA+AGG + chr1_3:16317760-16317779 Msa0106710:CDS 40.0%
ATGCCTATTTGTGCAGGAAA+GGG + chr1_3:16318012-16318031 Msa0106710:intron 40.0%
GGAGAAAAGAGCAAAGAAGA+AGG + chr1_3:16318033-16318052 Msa0106710:CDS 40.0%
TGAAACTCTGACAAGAACTC+TGG + chr1_3:16318129-16318148 Msa0106710:CDS 40.0%
CAAGGTAAAAGCTTTACCCA+TGG + chr1_3:16318228-16318247 Msa0106710:CDS 40.0%
GTTGAATTCGTCTCTTACCA+CGG - chr1_3:16318264-16318283 None:intergenic 40.0%
GTAAGAGACGAATTCAACCA+TGG + chr1_3:16318266-16318285 Msa0106710:CDS 40.0%
AATTCAACCATGGATGTGGT+GGG + chr1_3:16318276-16318295 Msa0106710:CDS 40.0%
CAATCATTAGGTGTTTGCCT+TGG + chr1_3:16318426-16318445 Msa0106710:three_prime_UTR 40.0%
ATCATTAGGTGTTTGCCTTG+GGG + chr1_3:16318428-16318447 Msa0106710:three_prime_UTR 40.0%
GCTTCTGCGACCAATTATTA+TGG + chr1_3:16318619-16318638 Msa0106710:three_prime_UTR 40.0%
TACTCCACCTTTACCGTTAG+CGG - chr1_3:16313298-16313317 None:intergenic 45.0%
TAACGGTAAAGGTGGAGTAG+CGG + chr1_3:16313299-16313318 Msa0106710:CDS 45.0%
AGAATTGAAGGAATGTGCGG+TGG + chr1_3:16313485-16313504 Msa0106710:CDS 45.0%
AGAAGAAGAAGTGAAGGTGG+AGG + chr1_3:16313536-16313555 Msa0106710:CDS 45.0%
GTGAAGGTGGAGGATCAAAA+CGG + chr1_3:16313546-16313565 Msa0106710:CDS 45.0%
GGACAAGAGTGATCGTGAAT+TGG + chr1_3:16313614-16313633 Msa0106710:CDS 45.0%
GAACGGAGTTAAAGAGATCG+AGG + chr1_3:16313647-16313666 Msa0106710:CDS 45.0%
!! AGTTGCTGATTCTACGGATG+CGG + chr1_3:16313695-16313714 Msa0106710:CDS 45.0%
AGTTGAACCAGCTGAGAAGA+AGG + chr1_3:16313839-16313858 Msa0106710:CDS 45.0%
! TTGGAAAGTGTAGCTGTTCC+TGG + chr1_3:16313885-16313904 Msa0106710:CDS 45.0%
ACTCACTTCAGCATCAACCA+CGG - chr1_3:16314165-16314184 None:intergenic 45.0%
TGCAGATGAGAAGGAAACTC+CGG + chr1_3:16314238-16314257 Msa0106710:CDS 45.0%
TTATCAGAGACAGACTCGAC+CGG - chr1_3:16314395-16314414 None:intergenic 45.0%
GTCGAGTCTGTCTCTGATAA+TGG + chr1_3:16314395-16314414 Msa0106710:CDS 45.0%
!! CTCTGATAATGGTTTGGCAG+AGG + chr1_3:16314406-16314425 Msa0106710:CDS 45.0%
! TAATGGTTTGGCAGAGGTTG+AGG + chr1_3:16314412-16314431 Msa0106710:CDS 45.0%
TGAGGTGAGTGAATGCATCA+AGG + chr1_3:16314430-16314449 Msa0106710:CDS 45.0%
TCACTTTCACCTTCATCAGC+AGG - chr1_3:16314512-16314531 None:intergenic 45.0%
ACCTTCTGTTGTTACGTCTG+AGG + chr1_3:16314532-16314551 Msa0106710:CDS 45.0%
ACCTCAGACGTAACAACAGA+AGG - chr1_3:16314536-16314555 None:intergenic 45.0%
! CTCGTAGCTGTTTCCTTTGA+AGG - chr1_3:16314674-16314693 None:intergenic 45.0%
AGCTGAGCCTTCAACAGAAA+CGG + chr1_3:16314697-16314716 Msa0106710:CDS 45.0%
AGCCGAACCTTCAACTGAAA+TGG + chr1_3:16314733-16314752 Msa0106710:CDS 45.0%
CGCCATTTCAGTTGAAGGTT+CGG - chr1_3:16314738-16314757 None:intergenic 45.0%
CGAACCTTCAACTGAAATGG+CGG + chr1_3:16314736-16314755 Msa0106710:CDS 45.0%
AGCTAGTTCCGTTGAAGGTT+CGG - chr1_3:16314774-16314793 None:intergenic 45.0%
GAACAATGTAGTGCAGAGTG+AGG + chr1_3:16314814-16314833 Msa0106710:CDS 45.0%
GCAGTCTCAGTTTCAACTGA+AGG - chr1_3:16314899-16314918 None:intergenic 45.0%
GAAGTTTCAGCTTCAACCGA+AGG - chr1_3:16315019-16315038 None:intergenic 45.0%
GAAGCTCAAACTTCAGCTGA+AGG + chr1_3:16315079-16315098 Msa0106710:CDS 45.0%
ATCAGTGGCAGATGCTTCTT+GGG - chr1_3:16315140-16315159 None:intergenic 45.0%
TTTCAGCTCGAATTTCGTCG+CGG - chr1_3:16315330-16315349 None:intergenic 45.0%
AGCTGAAAGCCTGGCTAAAA+AGG + chr1_3:16315342-16315361 Msa0106710:CDS 45.0%
TACAAGAAGAGAGAGCTGCT+AGG + chr1_3:16315527-16315546 Msa0106710:CDS 45.0%
ACAAGAAGAGAGAGCTGCTA+GGG + chr1_3:16315528-16315547 Msa0106710:CDS 45.0%
TGTCGGGGATATAGATAGCA+AGG + chr1_3:16315624-16315643 Msa0106710:CDS 45.0%
TTAGAGGCAGAGTTTCATGC+TGG - chr1_3:16315772-16315791 None:intergenic 45.0%
!! GCGATTACAGCTTTTGAGGA+AGG + chr1_3:16316031-16316050 Msa0106710:intron 45.0%
AAGTGGATGAGGTTATGGCT+CGG + chr1_3:16316138-16316157 Msa0106710:CDS 45.0%
TGCCTCTTGACGAGTGTTAT+CGG - chr1_3:16316174-16316193 None:intergenic 45.0%
GGCAATTGCATGAGAAGGTT+TGG + chr1_3:16316219-16316238 Msa0106710:intron 45.0%
! TTTTCCGCCCTTTTTCCTTG+AGG + chr1_3:16316272-16316291 Msa0106710:intron 45.0%
! TTTCCGCCCTTTTTCCTTGA+GGG + chr1_3:16316273-16316292 Msa0106710:intron 45.0%
TTTCCCTCAAGGAAAAAGGG+CGG - chr1_3:16316279-16316298 None:intergenic 45.0%
GTGCTTATTCACAACGAGGA+AGG + chr1_3:16316385-16316404 Msa0106710:intron 45.0%
GGAACTCATACCCCTAGATT+TGG - chr1_3:16316437-16316456 None:intergenic 45.0%
CTGCGTACTTTAATGGCACA+AGG - chr1_3:16316591-16316610 None:intergenic 45.0%
GTCTGGAGACTAGTGTTAGT+AGG + chr1_3:16316720-16316739 Msa0106710:intron 45.0%
TCTGCTGAACTAGGTTGTTC+TGG + chr1_3:16316801-16316820 Msa0106710:intron 45.0%
! GGAGCGCTTATGTATTGATC+AGG + chr1_3:16317047-16317066 Msa0106710:CDS 45.0%
CTCTCAGCCTGAAAGCTAAT+TGG - chr1_3:16317161-16317180 None:intergenic 45.0%
ACTATTACCGGTGCAATACC+AGG + chr1_3:16317219-16317238 Msa0106710:CDS 45.0%
CTTCACCAGGATTAAGCGTT+CGG - chr1_3:16317277-16317296 None:intergenic 45.0%
TCAGTGAAGGCAGGAATCAT+GGG - chr1_3:16317305-16317324 None:intergenic 45.0%
TTCAGTGAAGGCAGGAATCA+TGG - chr1_3:16317306-16317325 None:intergenic 45.0%
TAAGCTCTTTCAGTGAAGGC+AGG - chr1_3:16317314-16317333 None:intergenic 45.0%
AAAGGATGAACCTGCTTCCA+AGG + chr1_3:16317415-16317434 Msa0106710:CDS 45.0%
! AGGTTTTTGTACCACAGCCT+TGG - chr1_3:16317435-16317454 None:intergenic 45.0%
! TCTGAAGGAGCAAGTTTTGC+AGG - chr1_3:16317488-16317507 None:intergenic 45.0%
!! TCTGCTGACTTCTTCTCTGA+AGG - chr1_3:16317503-16317522 None:intergenic 45.0%
AGCAGATCGAGTTTCTCGTT+GGG + chr1_3:16317517-16317536 Msa0106710:CDS 45.0%
TGAACCTGTGAGAACAAAGG+AGG + chr1_3:16317571-16317590 Msa0106710:CDS 45.0%
TCTTCCTCCTTTGTTCTCAC+AGG - chr1_3:16317578-16317597 None:intergenic 45.0%
TGTGAGAACAAAGGAGGAAG+AGG + chr1_3:16317577-16317596 Msa0106710:CDS 45.0%
GGAAGAGGAGCAGATCTTAA+AGG + chr1_3:16317592-16317611 Msa0106710:CDS 45.0%
GCAGATCTTAAAGGCTGAAC+AGG + chr1_3:16317601-16317620 Msa0106710:CDS 45.0%
GGAAGAAGAAGCAAAGCTGA+AGG + chr1_3:16317634-16317653 Msa0106710:CDS 45.0%
CCTTATAGAGAGCCCTTTGT+TGG - chr1_3:16317733-16317752 None:intergenic 45.0%
CCAACAAAGGGCTCTCTATA+AGG + chr1_3:16317730-16317749 Msa0106710:CDS 45.0%
CATGCCTATTTGTGCAGGAA+AGG + chr1_3:16318011-16318030 Msa0106710:intron 45.0%
TCTCCCTTTCCTGCACAAAT+AGG - chr1_3:16318018-16318037 None:intergenic 45.0%
CTTGTCAGAGTTTCAGAGCT+AGG - chr1_3:16318124-16318143 None:intergenic 45.0%
TCAGCTTGAGAAACCAGTTG+AGG + chr1_3:16318162-16318181 Msa0106710:CDS 45.0%
!! GCTCGTTTTGTTACCTCAAC+TGG - chr1_3:16318178-16318197 None:intergenic 45.0%
GACGAATTCAACCATGGATG+TGG + chr1_3:16318272-16318291 Msa0106710:CDS 45.0%
GAATTCAACCATGGATGTGG+TGG + chr1_3:16318275-16318294 Msa0106710:CDS 45.0%
ATTAGAACCCACCACATCCA+TGG - chr1_3:16318286-16318305 None:intergenic 45.0%
! GTGGGTTCTAATTGCAGTTC+TGG + chr1_3:16318294-16318313 Msa0106710:CDS 45.0%
TCATTAGGTGTTTGCCTTGG+GGG + chr1_3:16318429-16318448 Msa0106710:three_prime_UTR 45.0%
TCCGATAACACCGACAACGT+CGG + chr1_3:16313126-16313145 Msa0106710:CDS 50.0%
TTTACCGTTAGCGGCGTCAA+CGG - chr1_3:16313289-16313308 None:intergenic 50.0%
TAAAGGTGGAGTAGCGGTAG+AGG + chr1_3:16313305-16313324 Msa0106710:CDS 50.0%
! CAACGGTTGATGTCGTTGAG+CGG + chr1_3:16313379-16313398 Msa0106710:CDS 50.0%
! AACGGTTGATGTCGTTGAGC+GGG + chr1_3:16313380-16313399 Msa0106710:CDS 50.0%
! CGATGTTGTTGTTGCTGACG+TGG + chr1_3:16313593-16313612 Msa0106710:CDS 50.0%
CGGAGTTAAAGAGATCGAGG+AGG + chr1_3:16313650-16313669 Msa0106710:CDS 50.0%
! GGAGGTGGTTGATTCTGATG+CGG + chr1_3:16313719-16313738 Msa0106710:CDS 50.0%
! GAAGCTGATTCACTCACTCC+AGG - chr1_3:16313906-16313925 None:intergenic 50.0%
TCCTGTTGATGTCGGCGAAT+CGG + chr1_3:16314463-16314482 Msa0106710:CDS 50.0%
ACACCAGAACCTGCTGATGA+AGG + chr1_3:16314500-16314519 Msa0106710:CDS 50.0%
TCACCTTCATCAGCAGGTTC+TGG - chr1_3:16314506-16314525 None:intergenic 50.0%
TGAGCCTTCAACAGAAACGG+CGG + chr1_3:16314700-16314719 Msa0106710:CDS 50.0%
ACCTTCAACTGAAATGGCGG+TGG + chr1_3:16314739-16314758 Msa0106710:CDS 50.0%
TCCACCGCCATTTCAGTTGA+AGG - chr1_3:16314743-16314762 None:intergenic 50.0%
GAGTGAAGCCGAACCTTCAA+CGG + chr1_3:16314763-16314782 Msa0106710:CDS 50.0%
ACCTTCAACGGAACTAGCTG+AGG + chr1_3:16314775-16314794 Msa0106710:CDS 50.0%
CCTTCAACGGAACTAGCTGA+GGG + chr1_3:16314776-16314795 Msa0106710:CDS 50.0%
CATCAGTGGCAGATGCTTCT+TGG - chr1_3:16315141-16315160 None:intergenic 50.0%
AGATGCATCCACAGCATCAG+TGG - chr1_3:16315155-16315174 None:intergenic 50.0%
TGGTGAGGAGGCCATTCTAT+TGG + chr1_3:16315215-16315234 Msa0106710:CDS 50.0%
GAGGAGGCCATTCTATTGGT+TGG + chr1_3:16315219-16315238 Msa0106710:CDS 50.0%
! GGCCATTCTATTGGTTGGTC+CGG + chr1_3:16315224-16315243 Msa0106710:CDS 50.0%
! GCCATTCTATTGGTTGGTCC+GGG + chr1_3:16315225-16315244 Msa0106710:CDS 50.0%
ACCCGGACCAACCAATAGAA+TGG - chr1_3:16315229-16315248 None:intergenic 50.0%
CATCATCGTATCTCGGAACC+CGG - chr1_3:16315246-16315265 None:intergenic 50.0%
CGAAATTCGAGCTGAAAGCC+TGG + chr1_3:16315333-16315352 Msa0106710:CDS 50.0%
TGCCGATAACACTCGTCAAG+AGG + chr1_3:16316169-16316188 Msa0106710:CDS 50.0%
GCAAATGCGACACACCTTTG+TGG + chr1_3:16316610-16316629 Msa0106710:intron 50.0%
! CTTAGGCTGTGTTGACCCAA+TGG + chr1_3:16316649-16316668 Msa0106710:intron 50.0%
GCTGAACTAGGTTGTTCTGG+AGG + chr1_3:16316804-16316823 Msa0106710:intron 50.0%
! ACTGCAAGAACTAGGAGCAC+AGG + chr1_3:16317008-16317027 Msa0106710:CDS 50.0%
! CTGCAAGAACTAGGAGCACA+GGG + chr1_3:16317009-16317028 Msa0106710:CDS 50.0%
! TGCAAGAACTAGGAGCACAG+GGG + chr1_3:16317010-16317029 Msa0106710:CDS 50.0%
CTGTACTCCTGGTATTGCAC+CGG - chr1_3:16317229-16317248 None:intergenic 50.0%
! GCAATACCAGGAGTACAGTG+AGG + chr1_3:16317231-16317250 Msa0106710:CDS 50.0%
CAGCAGATCGAGTTTCTCGT+TGG + chr1_3:16317516-16317535 Msa0106710:CDS 50.0%
GCAGATCGAGTTTCTCGTTG+GGG + chr1_3:16317518-16317537 Msa0106710:CDS 50.0%
CAGATCGAGTTTCTCGTTGG+GGG + chr1_3:16317519-16317538 Msa0106710:CDS 50.0%
AGATCGAGTTTCTCGTTGGG+GGG + chr1_3:16317520-16317539 Msa0106710:CDS 50.0%
TCTTAAAGGCTGAACAGGCG+AGG + chr1_3:16317606-16317625 Msa0106710:CDS 50.0%
!! AAGCTAAGGAGGCACTGCAA+AGG + chr1_3:16317684-16317703 Msa0106710:CDS 50.0%
ATGCCGAAAAGGCCCAACAA+AGG + chr1_3:16317717-16317736 Msa0106710:CDS 50.0%
TGCCGAAAAGGCCCAACAAA+GGG + chr1_3:16317718-16317737 Msa0106710:CDS 50.0%
! AGCCCTTTGTTGGGCCTTTT+CGG - chr1_3:16317723-16317742 None:intergenic 50.0%
CCTGCACAAATAGGCATGCA+TGG - chr1_3:16318009-16318028 None:intergenic 50.0%
CCATGCATGCCTATTTGTGC+AGG + chr1_3:16318006-16318025 Msa0106710:intron 50.0%
!! GCCGACGTTGTCGGTGTTAT+CGG - chr1_3:16313130-16313149 None:intergenic 55.0%
TTCACCTTCACCGCCTTCGA+CGG - chr1_3:16313154-16313173 None:intergenic 55.0%
GTTACCGTTGACGCCGCTAA+CGG + chr1_3:16313282-16313301 Msa0106710:CDS 55.0%
GTTGACGCCGCTAACGGTAA+AGG + chr1_3:16313288-16313307 Msa0106710:CDS 55.0%
TGTCGTTGAGCGGGAAGAGA+AGG + chr1_3:16313389-16313408 Msa0106710:CDS 55.0%
! GGAGGATCAAAACGGTGTCG+TGG + chr1_3:16313554-16313573 Msa0106710:CDS 55.0%
!! TGCTGATTCTACGGATGCGG+TGG + chr1_3:16313698-16313717 Msa0106710:CDS 55.0%
TGATTCTACGGATGCGGTGG+AGG + chr1_3:16313701-16313720 Msa0106710:CDS 55.0%
! GGTGGTTGATTCTGATGCGG+TGG + chr1_3:16313722-16313741 Msa0106710:CDS 55.0%
! TCCGATTCGCCGACATCAAC+AGG - chr1_3:16314467-16314486 None:intergenic 55.0%
TTGATGTCGGCGAATCGGAG+AGG + chr1_3:16314468-16314487 Msa0106710:CDS 55.0%
TCCACCGCCGTTTCTGTTGA+AGG - chr1_3:16314707-16314726 None:intergenic 55.0%
CCCTCAGCTAGTTCCGTTGA+AGG - chr1_3:16314779-16314798 None:intergenic 55.0%
AGCATCTGCCACTGATGCTG+TGG + chr1_3:16315144-16315163 Msa0106710:CDS 55.0%
GTCCTGTGCATCCACGACAT+CGG - chr1_3:16315182-16315201 None:intergenic 55.0%
TGTCGTGGATGCACAGGACA+TGG + chr1_3:16315183-16315202 Msa0106710:CDS 55.0%
GTCGTGGATGCACAGGACAT+GGG + chr1_3:16315184-16315203 Msa0106710:CDS 55.0%
! AGGAGCACAGGGGAAGAAAG+AGG + chr1_3:16317020-16317039 Msa0106710:CDS 55.0%
ACAGGGGAAGAAAGAGGACG+TGG + chr1_3:16317026-16317045 Msa0106710:CDS 55.0%
CAGTCTCCTCACTGTACTCC+TGG - chr1_3:16317240-16317259 None:intergenic 55.0%
GATGGCCGAACGCTTAATCC+TGG + chr1_3:16317269-16317288 Msa0106710:CDS 55.0%
ATCATGGGAGGCTCTTCACC+AGG - chr1_3:16317290-16317309 None:intergenic 55.0%
GTGAAGGCAGGAATCATGGG+AGG - chr1_3:16317302-16317321 None:intergenic 55.0%
TGAACCTGCTTCCAAGGCTG+TGG + chr1_3:16317421-16317440 Msa0106710:CDS 55.0%
TGTACCACAGCCTTGGAAGC+AGG - chr1_3:16317428-16317447 None:intergenic 55.0%
GGACGAGTCCGATGAAGAGA+AGG + chr1_3:16317541-16317560 Msa0106710:CDS 55.0%
CCACGGTTGCGAATAGCCAT+GGG - chr1_3:16318247-16318266 None:intergenic 55.0%
ACCACGGTTGCGAATAGCCA+TGG - chr1_3:16318248-16318267 None:intergenic 55.0%
TAGGTGTTTGCCTTGGGGGA+TGG + chr1_3:16318433-16318452 Msa0106710:three_prime_UTR 55.0%
GTAAGGGTTACCATCCCCCA+AGG - chr1_3:16318446-16318465 None:intergenic 55.0%
GCGGCGTCAACGGTAACGAT+CGG - chr1_3:16313279-16313298 None:intergenic 60.0%
GACGCCGCTAACGGTAAAGG+TGG + chr1_3:16313291-16313310 Msa0106710:CDS 60.0%
TTCTACGGATGCGGTGGAGG+TGG + chr1_3:16313704-16313723 Msa0106710:CDS 60.0%
GCCTTCAACAGAAACGGCGG+TGG + chr1_3:16314703-16314722 Msa0106710:CDS 60.0%
TGCATCTGCCACCGATGTCG+TGG + chr1_3:16315168-16315187 Msa0106710:CDS 60.0%
CTGTGCATCCACGACATCGG+TGG - chr1_3:16315179-16315198 None:intergenic 60.0%
CACCGATGTCGTGGATGCAC+AGG + chr1_3:16315177-16315196 Msa0106710:CDS 60.0%
TGCACAGGACATGGGCTCTG+AGG + chr1_3:16315192-16315211 Msa0106710:CDS 60.0%
!! ACAGGACATGGGCTCTGAGG+TGG + chr1_3:16315195-16315214 Msa0106710:CDS 60.0%
!! ACATGGGCTCTGAGGTGGTG+AGG + chr1_3:16315200-16315219 Msa0106710:CDS 60.0%
GGCTGAACAGGCGAGGAAGA+AGG + chr1_3:16317613-16317632 Msa0106710:CDS 60.0%
CCCATGGCTATTCGCAACCG+TGG + chr1_3:16318244-16318263 Msa0106710:CDS 60.0%
!! TTCGACGGCGCCGACGTTGT+CGG - chr1_3:16313139-16313158 None:intergenic 65.0%
!! TGGGCTCTGAGGTGGTGAGG+AGG + chr1_3:16315203-16315222 Msa0106710:CDS 65.0%
GACAACGTCGGCGCCGTCGA+AGG + chr1_3:16313138-16313157 Msa0106710:CDS 70.0%
AACGTCGGCGCCGTCGAAGG+CGG + chr1_3:16313141-16313160 Msa0106710:CDS 70.0%
GGCGCCGTCGAAGGCGGTGA+AGG + chr1_3:16313147-16313166 Msa0106710:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 16313084 16318667 16313084 ID=Msa0106710;Name=Msa0106710
chr1_3 mRNA 16313084 16318667 16313084 ID=Msa0106710-mRNA-1;Parent=Msa0106710;Name=Msa0106710-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.85|1|1|1|7|280|1295
chr1_3 exon 16313084 16315363 16313084 ID=Msa0106710-mRNA-1:exon:6199;Parent=Msa0106710-mRNA-1
chr1_3 exon 16315487 16315645 16315487 ID=Msa0106710-mRNA-1:exon:6200;Parent=Msa0106710-mRNA-1
chr1_3 exon 16315746 16315922 16315746 ID=Msa0106710-mRNA-1:exon:6201;Parent=Msa0106710-mRNA-1
chr1_3 exon 16316032 16316235 16316032 ID=Msa0106710-mRNA-1:exon:6202;Parent=Msa0106710-mRNA-1
chr1_3 exon 16316970 16317068 16316970 ID=Msa0106710-mRNA-1:exon:6203;Parent=Msa0106710-mRNA-1
chr1_3 exon 16317173 16317781 16317173 ID=Msa0106710-mRNA-1:exon:6204;Parent=Msa0106710-mRNA-1
chr1_3 exon 16318028 16318667 16318028 ID=Msa0106710-mRNA-1:exon:6205;Parent=Msa0106710-mRNA-1
chr1_3 CDS 16313084 16315363 16313084 ID=Msa0106710-mRNA-1:cds;Parent=Msa0106710-mRNA-1
chr1_3 CDS 16315487 16315645 16315487 ID=Msa0106710-mRNA-1:cds;Parent=Msa0106710-mRNA-1
chr1_3 CDS 16315746 16315922 16315746 ID=Msa0106710-mRNA-1:cds;Parent=Msa0106710-mRNA-1
chr1_3 CDS 16316032 16316235 16316032 ID=Msa0106710-mRNA-1:cds;Parent=Msa0106710-mRNA-1
chr1_3 CDS 16316970 16317068 16316970 ID=Msa0106710-mRNA-1:cds;Parent=Msa0106710-mRNA-1
chr1_3 CDS 16317173 16317781 16317173 ID=Msa0106710-mRNA-1:cds;Parent=Msa0106710-mRNA-1
chr1_3 CDS 16318028 16318387 16318028 ID=Msa0106710-mRNA-1:cds;Parent=Msa0106710-mRNA-1
chr1_3 three_prime_UTR 16318388 16318667 16318388 ID=Msa0106710-mRNA-1:three_prime_utr;Parent=Msa0106710-mRNA-1
Gene Sequence

>Msa0106710

ATGACAGCGGAGGAGGTGTTAAACGTACACAGCAAACAAATTTCCGATAACACCGACAACGTCGGCGCCGTCGAAGGCGGTGAAGGTGAAAGTGAAGATCGTAATCATAACAACAAGATCACAGAGCATTGTAATGGTAAGGAAATTTCTGTTAACGGCAATGTCGGTGTTTCTGATTCCGTTCTTTCAGATCCGATCGTTACCGTTGACGCCGCTAACGGTAAAGGTGGAGTAGCGGTAGAGGATCATAGCAACGAATCTGAAGTGACGGTTATGAATTCTAACGGTGAAACGACAACGGTTGATGTCGTTGAGCGGGAAGAGAAGGTTTGTGAAAACGGTTCGGGATCTGATGAGAATAACGTTAATGATGATGAATTTGTGATTGTTGAAAACGGTGGAGAATTGAAGGAATGTGCGGTGGAGAATCTTGTTGAGAATGAGATTCATGAAGAAGAAGAAGTGAAGGTGGAGGATCAAAACGGTGTCGTGGAAGAGAATGAGATTTGCGATGTTGTTGTTGCTGACGTGGACAAGAGTGATCGTGAATTGGAAGGTGTTGAGAACGGAGTTAAAGAGATCGAGGAGGTTTCTGTTGCCGCTGTTGAAGAAGTTGCTGATTCTACGGATGCGGTGGAGGTGGTTGATTCTGATGCGGTGGAAAGAACCGAATCTAAAGATCACGAAAGCGAAAATCTTTTGGATGGAAAGAACGAAATTCGTGATGTTGAATTGGAAAGTAAAGTTGATGGTGAAGTTGAACCAGCTGAGAAGAAGGAAAATGAAAATCTTGATGTTGAATTGGAAAGTGTAGCTGTTCCTGGAGTGAGTGAATCAGCTTCAGCTGAGAAGAATGATAATCGCGATGTTGAAGTGGAAACTGTAGTTGATTCTGAAGTGAGTGAATCAACTACGAAGAATGAAAATCGTGATGTTGAGTTGAAAACTGTAGTTGATTCTGTAGTGAGTGAATCAGCTGAGAAGAATGAAAATCGTGATGTTCAATTGGAAAGTGTAGTTGATTCTGCAGTGAGTGAATCAGCTGAGAAAAATGAAATTCGGGATGTTGAATTAGAAACCGTGGTTGATGCTGAAGTGAGTGAATCGGTCGAGAAGAATGAAATTCCAGTTGATGTTAATGGAGTTTGTGATAATGCAGATGAGAAGGAAACTCCGGTTGATGTTAATGTAGATACTCAAAATGATTTAGAGAAGGTGTCTGATGAGTCTGTCTCTGATACAATTGTTGAAAATGATTTGGATAAGGTACCGGTTGAGTCTGTCTCTGATAATGGTTTGGAGAAGGTACCGGTCGAGTCTGTCTCTGATAATGGTTTGGCAGAGGTTGAGGTGAGTGAATGCATCAAGGAGAATGTGATTCCTGTTGATGTCGGCGAATCGGAGAGGTCTGTTGAGACACCAGAACCTGCTGATGAAGGTGAAAGTGAACCTTCTGTTGTTACGTCTGAGGTGAGAGACATTAAAAAGGAGAGTGAGGCTGAACCTTCAGATAATGCTGTCAAAGTTGAAGGTGAATCTATTGAAGTCTCTGAGATTAAAAACGATGCAGTTGGGGATGAAGTTGAACCTTCAAAGGAAACAGCTACGAGTGAAGCTGAGCCTTCAACAGAAACGGCGGTGGAGCGTGAAGCCGAACCTTCAACTGAAATGGCGGTGGAGAGTGAAGCCGAACCTTCAACGGAACTAGCTGAGGGTGAAGCTGAAGTTTTGAACAATGTAGTGCAGAGTGAGGCTGAGCCTTCTGTTGATGTTGCAGATTTGAAAACCAATGTTGTCGATAGAGAAGTTGAACCTTCAGTTGAAACTGAGACTGCGGTTGAAGCCGAAACTTCAGTTGAAGCTGAAACTTCGGTTGAAGCCGAAACATCAATTGAAACTTCAATTGAAGCCGAAATTTCAATTGAAGCTGAACCTTCGGTTGAAGCTGAAACTTCGGTTGAAGCCGAGACCTCTATTGAAGCTGAACCTTCAGTTGAAGCTCAAACTTCAGCTGAAGGTAGCAATCAGACAACAGCTGAAGATTTGAAAACATCCCAAGAAGCATCTGCCACTGATGCTGTGGATGCATCTGCCACCGATGTCGTGGATGCACAGGACATGGGCTCTGAGGTGGTGAGGAGGCCATTCTATTGGTTGGTCCGGGTTCCGAGATACGATGATGATGACAATGTAAAAGAGCAGATTCAACATGCTCTTCAACAAGTAGAGGAGCAGACTAAAATCCGCGACGAAATTCGAGCTGAAAGCCTGGCTAAAAAGGCCCTTCGTAAAGAGTATAATCAAGAATTTAGAGCTGCAGTACAAGAAGAGAGAGCTGCTAGGGAGTTGCTCAAATCCAAACGACAAGAGATGGATTCAGTTCAATCCACCATGAATAGATTAAACAATGCAATTTCTGTCGGGGATATAGATAGCAAGATTCGAAACATGGAACACATGATCCAGCATGAAACTCTGCCTCTAAAAGAAGAAAAGCAATTGATTCGCCAAATCAAACTATTGAAGCAAAATCGTGGCGAGCTGTCTAATATTATTGCAAAACAGGATCAATCACAATCTCTCGACGACAAAGAAAGCATTGAAGAGCAAACTAAGCGATTACAGCTTTTGAGGAAGGAATTGGATGTGCTTAGAAGTAATCTCCTGAAGGCAGAAGCAATAACTAAAGCAGCAAAGAAGAAATATGAGGAAGAAGGTAATCAAGTGGATGAGGTTATGGCTCGGTATAACGCTGCCGATAACACTCGTCAAGAGGCATTTGTCAAGTTACAGACTTTGAAAAGGCAATTGCATGAGAAGAGCAAATATTTTTGGGAATACAGAAGTGCTTCAATGAGACTGCAAGAACTAGGAGCACAGGGGAAGAAAGAGGACGTGGAGCGCTTATGTATTGATCAGGCTGAGAGAATGCATGAGCTGTTGAAGAATGACGAGTTCAGAAAGGACTATTACCGGTGCAATACCAGGAGTACAGTGAGGAGACTGCAAACTTTAGATGGCCGAACGCTTAATCCTGGTGAAGAGCCTCCCATGATTCCTGCCTTCACTGAAAGAGCTTACAAAAATGATTCTTCAGTTTCGCAGTCAACCCCTGAACAACAAAAGAAATCGATACCAACAGAACCTGTTACTGTTAATACAAAGGATGAACCTGCTTCCAAGGCTGTGGTACAAAAACCTGAAATAAGCCAGACAAGTAAACCTAAAAAGCCTGCAAAACTTGCTCCTTCAGAGAAGAAGTCAGCAGATCGAGTTTCTCGTTGGGGGGACGAGTCCGATGAAGAGAAGGAACCTAATGAACCTGTGAGAACAAAGGAGGAAGAGGAGCAGATCTTAAAGGCTGAACAGGCGAGGAAGAAGGAAGAAGAAGCAAAGCTGAAGGAAATGAAAAGGCTAGAGGAAATTGAGAAAGCTAAGGAGGCACTGCAAAGGAAAAAGCGTAATGCCGAAAAGGCCCAACAAAGGGCTCTCTATAAGGCACAAAAAGAAGCTGAGCAAAAAGAGAAGGAAAGGGAGAAAAGAGCAAAGAAGAAGGGAAAAAGAAAGACAGTTACTACTGAAGATGCTGTGGAGAATACAGAACAAGATGCTGCAGCTTCTCCTAGCTCTGAAACTCTGACAAGAACTCTGGAAGAATCTGATCAGCTTGAGAAACCAGTTGAGGTAACAAAACGAGCAGTGAAACCATCTCAATTCACAAAACAAAGCAAGGTAAAAGCTTTACCCATGGCTATTCGCAACCGTGGTAAGAGACGAATTCAACCATGGATGTGGTGGGTTCTAATTGCAGTTCTGGTTATTGCTGCCTTGTTTTATATGGGAAATAACAGCTCCTTGAGATCTTCATTTCAAAGCTTTGGTTTTTGA
Protein sequence

>Msa0106710

MTAEEVLNVHSKQISDNTDNVGAVEGGEGESEDRNHNNKITEHCNGKEISVNGNVGVSDSVLSDPIVTVDAANGKGGVAVEDHSNESEVTVMNSNGETTTVDVVEREEKVCENGSGSDENNVNDDEFVIVENGGELKECAVENLVENEIHEEEEVKVEDQNGVVEENEICDVVVADVDKSDRELEGVENGVKEIEEVSVAAVEEVADSTDAVEVVDSDAVERTESKDHESENLLDGKNEIRDVELESKVDGEVEPAEKKENENLDVELESVAVPGVSESASAEKNDNRDVEVETVVDSEVSESTTKNENRDVELKTVVDSVVSESAEKNENRDVQLESVVDSAVSESAEKNEIRDVELETVVDAEVSESVEKNEIPVDVNGVCDNADEKETPVDVNVDTQNDLEKVSDESVSDTIVENDLDKVPVESVSDNGLEKVPVESVSDNGLAEVEVSECIKENVIPVDVGESERSVETPEPADEGESEPSVVTSEVRDIKKESEAEPSDNAVKVEGESIEVSEIKNDAVGDEVEPSKETATSEAEPSTETAVEREAEPSTEMAVESEAEPSTELAEGEAEVLNNVVQSEAEPSVDVADLKTNVVDREVEPSVETETAVEAETSVEAETSVEAETSIETSIEAEISIEAEPSVEAETSVEAETSIEAEPSVEAQTSAEGSNQTTAEDLKTSQEASATDAVDASATDVVDAQDMGSEVVRRPFYWLVRVPRYDDDDNVKEQIQHALQQVEEQTKIRDEIRAESLAKKALRKEYNQEFRAAVQEERAARELLKSKRQEMDSVQSTMNRLNNAISVGDIDSKIRNMEHMIQHETLPLKEEKQLIRQIKLLKQNRGELSNIIAKQDQSQSLDDKESIEEQTKRLQLLRKELDVLRSNLLKAEAITKAAKKKYEEEGNQVDEVMARYNAADNTRQEAFVKLQTLKRQLHEKSKYFWEYRSASMRLQELGAQGKKEDVERLCIDQAERMHELLKNDEFRKDYYRCNTRSTVRRLQTLDGRTLNPGEEPPMIPAFTERAYKNDSSVSQSTPEQQKKSIPTEPVTVNTKDEPASKAVVQKPEISQTSKPKKPAKLAPSEKKSADRVSRWGDESDEEKEPNEPVRTKEEEEQILKAEQARKKEEEAKLKEMKRLEEIEKAKEALQRKKRNAEKAQQRALYKAQKEAEQKEKEREKRAKKKGKRKTVTTEDAVENTEQDAAASPSSETLTRTLEESDQLEKPVEVTKRAVKPSQFTKQSKVKALPMAIRNRGKRRIQPWMWWVLIAVLVIAALFYMGNNSSLRSSFQSFGF*