AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0422840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0422840 MtrunA17_Chr3g0123361 97.052 814 15 2 8 816 3 812 0.0 1623
Msa0422840 MtrunA17_Chr4g0000571 45.793 511 198 11 20 521 20 460 3.75e-119 369
Msa0422840 MtrunA17_Chr4g0000561 46.622 444 179 9 20 449 138 537 1.50e-112 353
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0422840 AT1G13160.1 51.691 828 332 10 19 816 15 804 0.0 763
Msa0422840 AT4G31520.1 47.182 763 303 12 89 816 1 698 0.0 642
Msa0422840 AT4G31520.2 45.361 679 271 12 89 732 1 614 0.0 533

Find 198 sgRNAs with CRISPR-Local

Find 464 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATACACTTTCGTTGTTTA+TGG 0.108154 3_2:+72341559 Msa0422840:CDS
TGGCTTCATCCTTATGCTTT+TGG 0.189883 3_2:-72341658 None:intergenic
AGAGAGGTGTTGAGGGTAAA+AGG 0.219783 3_2:-72341314 None:intergenic
CTCATGTGACTTCTTATATA+GGG 0.264350 3_2:-72345556 None:intergenic
TCTCATGTGACTTCTTATAT+AGG 0.264450 3_2:-72345557 None:intergenic
CACCTCAAGTTATTCTTAGA+AGG 0.274420 3_2:+72342258 Msa0422840:CDS
TAAGCCTTTGGTCTTGCCTT+GGG 0.288436 3_2:-72345771 None:intergenic
AGTTCGGATTCGTAGCCTTC+AGG 0.288526 3_2:-72341142 None:intergenic
TGGGAGGAAAGCGTGGAAAT+AGG 0.291046 3_2:+72347311 Msa0422840:CDS
GGCTTTATCGGCGAGATCTT+TGG 0.291467 3_2:-72341269 None:intergenic
ATGAACTTCACTTCCATTTC+CGG 0.293716 3_2:+72341223 Msa0422840:CDS
TTTATAGAATTTCTTTAGAT+TGG 0.299879 3_2:+72347494 Msa0422840:three_prime_UTR
AAAAGTTTAACAACATTAAC+TGG 0.315137 3_2:-72344626 None:intergenic
AGCAACTCAGCGAGTTTGTT+AGG 0.319583 3_2:-72341343 None:intergenic
TAGAAGGGAGACGGTTTATA+AGG 0.324057 3_2:+72342274 Msa0422840:CDS
AGCGGCTGTCAAACAGAAAA+AGG 0.332497 3_2:+72346752 Msa0422840:CDS
TTTGATTGCAGCAGCGGTTC+AGG 0.336211 3_2:+72344782 Msa0422840:CDS
TTTATGGAGCTTCAAACATT+AGG 0.341381 3_2:+72341575 Msa0422840:CDS
TGAAGAGGATGGTGGGATTT+CGG 0.354594 3_2:+72346097 Msa0422840:CDS
AATTTGTAACATCTCGTTGA+TGG 0.369737 3_2:-72344761 None:intergenic
AAAGTGATAGCTCGAACAAT+TGG 0.375067 3_2:+72344597 Msa0422840:CDS
ATAAGCCTTTGGTCTTGCCT+TGG 0.384961 3_2:-72345772 None:intergenic
CCTTTAGTTCCTTGATCCTC+TGG 0.385498 3_2:-72346331 None:intergenic
AGAGAGGAACATGGCTTTAT+CGG 0.386019 3_2:-72341281 None:intergenic
GGCTTCATCATCATCACTTC+CGG 0.386181 3_2:-72345967 None:intergenic
GGTTCAGGCTTGCCATGATA+TGG 0.390505 3_2:+72344797 Msa0422840:CDS
GATGGTGATCTGCATATTCT+TGG 0.390989 3_2:+72346131 Msa0422840:CDS
TTGACTTCTCCATAAGCCTT+TGG 0.392390 3_2:-72345783 None:intergenic
AAGGCAAGACCAAAGGCTTA+TGG 0.393421 3_2:+72345774 Msa0422840:CDS
AAGAATAACTTGAGGTGATT+CGG 0.393544 3_2:-72342252 None:intergenic
TGCTTTCATCATCACTATCT+TGG 0.393872 3_2:-72342214 None:intergenic
AATGTTGCGGCTGACGTTCC+TGG 0.394316 3_2:+72345804 Msa0422840:CDS
CCTCCGTCGCGGCATGGCTC+TGG 0.401059 3_2:-72341048 None:intergenic
GCTGCTCGAACACTTCCTTC+TGG 0.402199 3_2:+72341373 Msa0422840:CDS
GTCGTTGGAGATGCCGGAAA+TGG 0.407008 3_2:-72341236 None:intergenic
GTGGTGGTGGCTACGTTTCA+TGG 0.411738 3_2:-72341026 None:intergenic
GGGAGGAAAGCGTGGAAATA+GGG 0.412726 3_2:+72347312 Msa0422840:CDS
TGGATATATTTCTGAAGATA+AGG 0.421960 3_2:-72344651 None:intergenic
CCCTTCACTGCTAATTAAGA+AGG 0.422140 3_2:+72345728 Msa0422840:CDS
TGAATTGACTGCGGATTAAG+AGG 0.422788 3_2:-72341165 None:intergenic
TTCATCTTTGATTGTAGTGA+TGG 0.428682 3_2:-72341112 None:intergenic
TGATTCACCATCATGATCTT+CGG 0.432423 3_2:-72345988 None:intergenic
CCAGAGGATCAAGGAACTAA+AGG 0.433159 3_2:+72346331 Msa0422840:CDS
AGCTTCTCGTTGATTGCAGT+TGG 0.434838 3_2:-72347427 None:intergenic
AAGAAATAAATGTCTTCCTC+TGG 0.438362 3_2:-72347532 None:intergenic
GGAATTCAGAGAGGTGTTGA+GGG 0.438862 3_2:-72341321 None:intergenic
TATGTTTAGGCTATCACTGT+TGG 0.451491 3_2:+72345140 Msa0422840:intron
AACAAGGGCTCAACTGCATC+AGG 0.452014 3_2:-72344975 None:intergenic
CGGTATTATCACTGCCTAGC+TGG 0.453796 3_2:-72345947 None:intergenic
AAATGAGCAGGAAGATGATC+AGG 0.456808 3_2:+72345899 Msa0422840:CDS
CAGCTGCTGATTCAAGTCTC+CGG 0.457694 3_2:+72346228 Msa0422840:CDS
AGGATAAAACAGCAGCGGTC+TGG 0.462249 3_2:+72347276 Msa0422840:CDS
ATTGTTGTTGGAAGAGTTCA+AGG 0.462630 3_2:-72341195 None:intergenic
CGGCATGGCTCTGGTGGTGG+TGG 0.463339 3_2:-72341039 None:intergenic
ATTTGTAACATCTCGTTGAT+GGG 0.464321 3_2:-72344760 None:intergenic
GAAAATTACGCCAATGAACT+AGG 0.464720 3_2:-72347557 None:intergenic
TTCTTTCTCTTTGCAACTAA+CGG 0.465469 3_2:-72347228 None:intergenic
AAAAGGAGGTGAGGTGAGAG+AGG 0.467153 3_2:-72341297 None:intergenic
GGTCTTGCCTTGGGGTCAGT+AGG 0.471014 3_2:-72345762 None:intergenic
AAACCTGTGGATCTTTAAGA+TGG 0.472028 3_2:-72344277 None:intergenic
CGGGCTTTGAAGAAGTTGGC+AGG 0.472242 3_2:+72346248 Msa0422840:CDS
CTGTTGGAATAAATGCAGTC+AGG 0.474637 3_2:+72345156 Msa0422840:CDS
ACTGCGGATTAAGAGGAGTT+CGG 0.476230 3_2:-72341158 None:intergenic
AGTGGGGTCGTTGGAGATGC+CGG 0.478315 3_2:-72341242 None:intergenic
TGCTAGCTGATGTACCTTGG+TGG 0.479650 3_2:-72344151 None:intergenic
TCCTTCTTAATTAGCAGTGA+AGG 0.480554 3_2:-72345729 None:intergenic
TCACAAGCGCCCTCTTTGCC+CGG 0.481814 3_2:-72341942 None:intergenic
TCGCGGCATGGCTCTGGTGG+TGG 0.485482 3_2:-72341042 None:intergenic
AGCTGCTGATTCAAGTCTCC+GGG 0.485711 3_2:+72346229 Msa0422840:CDS
GCAACTCAGCGAGTTTGTTA+GGG 0.486274 3_2:-72341342 None:intergenic
GGATATATTTCTGAAGATAA+GGG 0.490544 3_2:-72344650 None:intergenic
AAACAAACCTTGACGATGGA+TGG 0.491961 3_2:-72342038 None:intergenic
GGGAATTCAGAGAGGTGTTG+AGG 0.492779 3_2:-72341322 None:intergenic
GTTCGGATTCGTAGCCTTCA+GGG 0.495722 3_2:-72341141 None:intergenic
AAACCTAGTTGATCAGAGCT+TGG 0.498249 3_2:-72346501 None:intergenic
ACGTATGAACCAAAAGCATA+AGG 0.500516 3_2:+72341649 Msa0422840:CDS
AAGTGATAGCTCGAACAATT+GGG 0.501384 3_2:+72344598 Msa0422840:CDS
TGGGGTCAGTAGGCCTCCCT+CGG 0.502050 3_2:-72345752 None:intergenic
GGATGAAGACCGGGCAAAGA+GGG 0.502850 3_2:+72341933 Msa0422840:CDS
GCGAGATCTTTGGCGACAGT+GGG 0.506577 3_2:-72341259 None:intergenic
AGGTTGGCAATGGTTAGAGC+AGG 0.507284 3_2:+72346699 Msa0422840:CDS
TCTCCGGGCTTTGAAGAAGT+TGG 0.508552 3_2:+72346244 Msa0422840:CDS
GAAATGCAATGAGCGATTTG+AGG 0.509530 3_2:+72344421 Msa0422840:CDS
AGTTCATGGCGGATTGTTGT+TGG 0.511020 3_2:-72341207 None:intergenic
TATAAGAAGTCACATGAGAA+AGG 0.511774 3_2:+72345561 Msa0422840:CDS
GGAAATGGAAGTGAAGTTCA+TGG 0.515511 3_2:-72341221 None:intergenic
CTGCCAACTTCTTCAAAGCC+CGG 0.516353 3_2:-72346247 None:intergenic
TTATCTTCAGAAATATATCC+AGG 0.516944 3_2:+72344653 Msa0422840:CDS
CCGTCGCGGCATGGCTCTGG+TGG 0.517615 3_2:-72341045 None:intergenic
GTTGGCTTAACATAAAATAG+AGG 0.517664 3_2:-72347409 None:intergenic
ATTTACAATTTGTTTAAACA+AGG 0.521288 3_2:-72344991 None:intergenic
CAGTGAAGAGGCTGATGAAG+AGG 0.523376 3_2:+72346082 Msa0422840:CDS
TATTGATGATGATGTTGAGC+AGG 0.523614 3_2:+72345845 Msa0422840:CDS
GTTTGACAGCCGCTCGAGCA+TGG 0.525793 3_2:-72346743 None:intergenic
GCTTAACAAGGAGGAGAGGT+TGG 0.526219 3_2:+72346683 Msa0422840:CDS
AAGCCTTTGGTCTTGCCTTG+GGG 0.527111 3_2:-72345770 None:intergenic
CTTAACATAAAATAGAGGTC+CGG 0.528152 3_2:-72347404 None:intergenic
ACCTCAAGTTATTCTTAGAA+GGG 0.528603 3_2:+72342259 Msa0422840:CDS
TGGTCTAAGTAACAAGCAAA+AGG 0.529533 3_2:+72347188 Msa0422840:CDS
TTTGGCGACAGTGGGGTCGT+TGG 0.532255 3_2:-72341251 None:intergenic
GATCCTCTGGAAGTCTGCAT+TGG 0.533194 3_2:-72346318 None:intergenic
CAATATGCAGTACCATATCA+TGG 0.533875 3_2:-72344809 None:intergenic
TCATCTTTGATTGTAGTGAT+GGG 0.534341 3_2:-72341111 None:intergenic
GAAATGCCTCCGTCGCGGCA+TGG 0.534644 3_2:-72341054 None:intergenic
TACAAATTTGATTGCAGCAG+CGG 0.536492 3_2:+72344776 Msa0422840:CDS
CTTCCTTCCATCCATCGTCA+AGG 0.537262 3_2:+72342031 Msa0422840:CDS
AGAACTGCATTAGCGCAGCA+CGG 0.538011 3_2:+72346450 Msa0422840:CDS
AGGCTGATGAAGAGGATGGT+GGG 0.545198 3_2:+72346090 Msa0422840:CDS
TGCAGACTTCCAGAGGATCA+AGG 0.553115 3_2:+72346322 Msa0422840:CDS
ACGGAGGCATTTCTCCCCTC+CGG 0.553911 3_2:+72341064 Msa0422840:CDS
CCACCAGAGCCATGCCGCGA+CGG 0.554993 3_2:+72341045 Msa0422840:CDS
ATTCCAAGCTCTGATCAACT+AGG 0.555451 3_2:+72346498 Msa0422840:CDS
AGTTATTCTTAGAAGGGAGA+CGG 0.556840 3_2:+72342265 Msa0422840:CDS
GGCGAGATCTTTGGCGACAG+TGG 0.557517 3_2:-72341260 None:intergenic
CAACCATCTTAAAGATCCAC+AGG 0.558634 3_2:+72344274 Msa0422840:CDS
AGAGCAGGGAGGGAGGAAAG+AGG 0.560920 3_2:+72346714 Msa0422840:CDS
GCCCTGCCAGAAAATGAAGA+TGG 0.561534 3_2:+72346287 Msa0422840:CDS
ATCTGCAACAACTCAGCACC+AGG 0.561871 3_2:-72345822 None:intergenic
ATAGGGCAAGGTCTTGAAGT+AGG 0.562189 3_2:-72345539 None:intergenic
CAAGAACTAAGATAGAGAAA+AGG 0.563545 3_2:+72347256 Msa0422840:CDS
GAACTGCATTAGCGCAGCAC+GGG 0.565852 3_2:+72346451 Msa0422840:CDS
CTAGGTTTAAAGCGAGTGGA+TGG 0.570555 3_2:+72346516 Msa0422840:CDS
TTGTTGGAAGAGTTCAAGGG+AGG 0.570603 3_2:-72341191 None:intergenic
CCTTCTTAATTAGCAGTGAA+GGG 0.572476 3_2:-72345728 None:intergenic
AATAGCAAGAGGATGAAGAC+CGG 0.575025 3_2:+72341923 Msa0422840:intron
ATTATCAGCATCATCACCAC+TGG 0.575178 3_2:-72346045 None:intergenic
TATACTACTTGTTAATCGTG+AGG 0.577763 3_2:+72341423 Msa0422840:CDS
AGTTCTCATTCTGATGATTG+CGG 0.578631 3_2:+72345870 Msa0422840:CDS
GGCAATGGTTAGAGCAGGGA+GGG 0.578720 3_2:+72346704 Msa0422840:CDS
AACAACGTGGGAGGAAAGCG+TGG 0.583188 3_2:+72347304 Msa0422840:CDS
GTTGAGGGTAAAAGGAGGTG+AGG 0.584102 3_2:-72341306 None:intergenic
AAAAGCTTAACAAGGAGGAG+AGG 0.586507 3_2:+72346679 Msa0422840:CDS
AAACCTTGACGATGGATGGA+AGG 0.587340 3_2:-72342034 None:intergenic
AGGATGAAGACCGGGCAAAG+AGG 0.587878 3_2:+72341932 Msa0422840:CDS
GATATGCCTGCGTATGCCAC+TGG 0.588647 3_2:+72345181 Msa0422840:CDS
CAAGGAGGAGAGGTTGGCAA+TGG 0.589667 3_2:+72346689 Msa0422840:CDS
CAGCTAGGCAGTGATAATAC+CGG 0.590821 3_2:+72345948 Msa0422840:CDS
CCAGAGCCATGCCGCGACGG+AGG 0.592746 3_2:+72341048 Msa0422840:CDS
GTGACTTCTTATATAGGGCA+AGG 0.593175 3_2:-72345551 None:intergenic
GAGGCTGATGAAGAGGATGG+TGG 0.593619 3_2:+72346089 Msa0422840:CDS
TGTTGGAATAAATGCAGTCA+GGG 0.594175 3_2:+72345157 Msa0422840:CDS
TCTTTGATTGTAGTGATGGG+AGG 0.597637 3_2:-72341108 None:intergenic
TTGCGGTTCAGAAAATGAGC+AGG 0.597937 3_2:+72345887 Msa0422840:CDS
TTTCCAATGCAGACTTCCAG+AGG 0.598028 3_2:+72346315 Msa0422840:CDS
TTTACAATTTGTTTAAACAA+GGG 0.598053 3_2:-72344990 None:intergenic
AATGGTTAGAGCAGGGAGGG+AGG 0.598243 3_2:+72346707 Msa0422840:CDS
ATTTCGGAACATGAAGGAGA+TGG 0.601769 3_2:+72346113 Msa0422840:CDS
GGTGAGGTGAGAGAGGAACA+TGG 0.601814 3_2:-72341290 None:intergenic
GGTGGGATTTCGGAACATGA+AGG 0.604100 3_2:+72346107 Msa0422840:CDS
TCAACTAGGTTTAAAGCGAG+TGG 0.604947 3_2:+72346512 Msa0422840:CDS
AGAGCTACTTACTTCAAGCA+TGG 0.609650 3_2:-72346541 None:intergenic
GTTAGTTGCAAAGAGAAAGA+AGG 0.613009 3_2:+72347230 Msa0422840:CDS
GAGGTGTTGAGGGTAAAAGG+AGG 0.613387 3_2:-72341311 None:intergenic
AGGGAGGCCTACTGACCCCA+AGG 0.616449 3_2:+72345755 Msa0422840:CDS
TTTGTAACATCTCGTTGATG+GGG 0.624366 3_2:-72344759 None:intergenic
GGGCTTTGAAGAAGTTGGCA+GGG 0.625113 3_2:+72346249 Msa0422840:CDS
TATGTGAGCTTCACAAGAGA+CGG 0.625829 3_2:+72341968 Msa0422840:CDS
AAATCGTTACGAAGTCCAGA+AGG 0.627630 3_2:-72341388 None:intergenic
AAAGAATGTTCTGAAGTGCA+CGG 0.632826 3_2:-72341685 None:intergenic
TACTTACCAGTGGCATACGC+AGG 0.634401 3_2:-72345187 None:intergenic
AGCTTCACAAGAGACGGACA+TGG 0.637224 3_2:+72341974 Msa0422840:CDS
TCTGCATATTCTTGGAAGTG+TGG 0.637853 3_2:+72346139 Msa0422840:CDS
AAGAGCGCGGATCATCTGAA+AGG 0.638139 3_2:+72344225 Msa0422840:CDS
TGACCCCAAGGCAAGACCAA+AGG 0.640319 3_2:+72345767 Msa0422840:CDS
ATAGCAAGAGGATGAAGACC+GGG 0.645784 3_2:+72341924 Msa0422840:intron
GATTTGATTCTGCATTCCAG+AGG 0.646076 3_2:+72347516 Msa0422840:three_prime_UTR
ACATGACCGCTCACGTCCAG+AGG 0.646176 3_2:+72345022 Msa0422840:CDS
TCTGACGATGACAACCAGCT+AGG 0.648692 3_2:+72345933 Msa0422840:CDS
TGCTAATTAAGAAGGACCGA+GGG 0.650296 3_2:+72345736 Msa0422840:CDS
TGATCTAGAAGACAGTGAAG+AGG 0.650869 3_2:+72346070 Msa0422840:CDS
GGTTGGCAATGGTTAGAGCA+GGG 0.652549 3_2:+72346700 Msa0422840:CDS
GAAGTTGGCAGGGACAACAA+TGG 0.655026 3_2:+72346259 Msa0422840:CDS
CTGCTAATTAAGAAGGACCG+AGG 0.659236 3_2:+72345735 Msa0422840:CDS
AGGACAGTACCATGCTCGAG+CGG 0.659615 3_2:+72346734 Msa0422840:CDS
TGATGATGAAAGCAGTGACG+AGG 0.661264 3_2:+72342223 Msa0422840:CDS
TTGTTGTTGGAAGAGTTCAA+GGG 0.662039 3_2:-72341194 None:intergenic
CTGGTAAACAACAACGTGGG+AGG 0.662104 3_2:+72347295 Msa0422840:CDS
AAGATGAAATGCGACCCTGA+AGG 0.662503 3_2:+72341127 Msa0422840:CDS
TAATTAAGAAGGACCGAGGG+AGG 0.664397 3_2:+72345739 Msa0422840:CDS
TGGCAATGGTTAGAGCAGGG+AGG 0.665731 3_2:+72346703 Msa0422840:CDS
AGAAAAGGATAAAACAGCAG+CGG 0.669573 3_2:+72347271 Msa0422840:CDS
AAGGGCTCAACTGCATCAGG+AGG 0.671557 3_2:-72344972 None:intergenic
TTATGGAGAAGTCAATGTTG+CGG 0.672631 3_2:+72345791 Msa0422840:CDS
AGTTGCAAAGAGAAAGAAGG+TGG 0.672753 3_2:+72347233 Msa0422840:CDS
GGGGAGAAATGCCTCCGTCG+CGG 0.674537 3_2:-72341059 None:intergenic
TAAAGACCTCTGGACGTGAG+CGG 0.676998 3_2:-72345028 None:intergenic
TCTCATTACATTATTCCGAG+AGG 0.680546 3_2:+72345605 Msa0422840:CDS
GTTTGTTAGGGAATTCAGAG+AGG 0.681328 3_2:-72341330 None:intergenic
GGGAGGAATTGAATTGACTG+CGG 0.685428 3_2:-72341174 None:intergenic
CGGTCTGGTAAACAACAACG+TGG 0.692778 3_2:+72347291 Msa0422840:CDS
GGATCTTTAAGATGGTTGAG+TGG 0.692797 3_2:-72344269 None:intergenic
GAAGAGGCTGATGAAGAGGA+TGG 0.693614 3_2:+72346086 Msa0422840:CDS
TCCCTTCTAAGAATAACTTG+AGG 0.695578 3_2:-72342260 None:intergenic
AGTTCTGATTACGAAACCAG+TGG 0.696679 3_2:+72346029 Msa0422840:CDS
GATGAAGCCGAAGATCATGA+TGG 0.710456 3_2:+72345981 Msa0422840:CDS
CGAGATCTTTGGCGACAGTG+GGG 0.730021 3_2:-72341258 None:intergenic
GGTCTGGTAAACAACAACGT+GGG 0.766215 3_2:+72347292 Msa0422840:CDS
AATGGAAGTGAAGTTCATGG+CGG 0.785076 3_2:-72341218 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATTTGAAGAAATAATT+TGG + chr3_2:72343033-72343052 Msa0422840:intron 10.0%
!! TATATTTGAAGAAATAATTT+GGG + chr3_2:72343034-72343053 Msa0422840:intron 10.0%
!! ATATTTGAAGAAATAATTTG+GGG + chr3_2:72343035-72343054 Msa0422840:intron 15.0%
!!! GTTTTCATATACAATAATAT+AGG - chr3_2:72344476-72344495 None:intergenic 15.0%
!!! TTTACAATTTGTTTAAACAA+GGG - chr3_2:72344993-72345012 None:intergenic 15.0%
!!! ATTTACAATTTGTTTAAACA+AGG - chr3_2:72344994-72345013 None:intergenic 15.0%
!!! ATTTGTTTACTTTTATTCAT+AGG + chr3_2:72346413-72346432 Msa0422840:intron 15.0%
!!! ATATTTTTAAAAATGAGCAA+GGG - chr3_2:72346789-72346808 None:intergenic 15.0%
!!! AATATTTTTAAAAATGAGCA+AGG - chr3_2:72346790-72346809 None:intergenic 15.0%
!! TTTATAGAATTTCTTTAGAT+TGG + chr3_2:72347494-72347513 Msa0422840:three_prime_UTR 15.0%
!!! GTTGTTTGGTTTTTTTTTAT+AGG + chr3_2:72341740-72341759 Msa0422840:intron 20.0%
!!! TTGGTTTAGATTAGTTTTTA+AGG + chr3_2:72341781-72341800 Msa0422840:intron 20.0%
!!! TTTTTTTCTTTTGTTCACTT+TGG + chr3_2:72342058-72342077 Msa0422840:intron 20.0%
!! ATTTACGAACAAAAGATATT+TGG - chr3_2:72342562-72342581 None:intergenic 20.0%
!! TTTAATTAACAAGAAATGCT+TGG + chr3_2:72343765-72343784 Msa0422840:intron 20.0%
!!! AATCACACTTTCAAAATTTT+AGG + chr3_2:72344557-72344576 Msa0422840:intron 20.0%
!! AAAAGTTTAACAACATTAAC+TGG - chr3_2:72344629-72344648 None:intergenic 20.0%
!! TAGTTAAATTTGGTAAACTT+TGG + chr3_2:72344682-72344701 Msa0422840:intron 20.0%
!!! TTAATTGTCTTATGCATTTT+TGG + chr3_2:72346833-72346852 Msa0422840:intron 20.0%
!! AAAAAAATACACATCCATAT+TGG - chr3_2:72347151-72347170 None:intergenic 20.0%
!!! TTTTTTTTGTATTGAACAGA+CGG + chr3_2:72347164-72347183 Msa0422840:intron 20.0%
! TGTAAAATTTGAATAGCAAG+AGG + chr3_2:72341912-72341931 Msa0422840:intron 25.0%
!!! ATATTGGCATTGATTATCTA+AGG + chr3_2:72342430-72342449 Msa0422840:intron 25.0%
! TATATTTAGAAGTTCAGAAG+AGG + chr3_2:72342454-72342473 Msa0422840:intron 25.0%
! ATATTTAGAAGTTCAGAAGA+GGG + chr3_2:72342455-72342474 Msa0422840:intron 25.0%
! ATTTAAACTTGAAATGCCAT+TGG - chr3_2:72342617-72342636 None:intergenic 25.0%
!! TTCTTTTCTTCTAACTTATG+AGG - chr3_2:72342755-72342774 None:intergenic 25.0%
! TGCATGTGCAAATTTAAATA+TGG - chr3_2:72342811-72342830 None:intergenic 25.0%
! TATTTAAATTTGCACATGCA+TGG + chr3_2:72342811-72342830 Msa0422840:intron 25.0%
!! CAAGTTAGCTAAAATTTTCA+AGG + chr3_2:72342932-72342951 Msa0422840:intron 25.0%
! TTGCTTATTTGCTCATTTAA+GGG - chr3_2:72342973-72342992 None:intergenic 25.0%
!!! TTCATAGAAGCTTTAGAATT+AGG + chr3_2:72343007-72343026 Msa0422840:intron 25.0%
! TGATGTGGTATTATATCATT+TGG + chr3_2:72343094-72343113 Msa0422840:intron 25.0%
! GATGTGGTATTATATCATTT+GGG + chr3_2:72343095-72343114 Msa0422840:intron 25.0%
! TTATATCATTTGGGTAGTAT+AGG + chr3_2:72343104-72343123 Msa0422840:intron 25.0%
! TATATCATTTGGGTAGTATA+GGG + chr3_2:72343105-72343124 Msa0422840:intron 25.0%
! ATGTTAACATTCAACTCAAA+TGG - chr3_2:72343245-72343264 None:intergenic 25.0%
! AATTTACGTTCTATTCACTT+AGG + chr3_2:72343276-72343295 Msa0422840:intron 25.0%
! AATACAAAATCCTCCTAATT+TGG + chr3_2:72343403-72343422 Msa0422840:intron 25.0%
! ATACAAAATCCTCCTAATTT+GGG + chr3_2:72343404-72343423 Msa0422840:intron 25.0%
! TCTAGTATGAAAGTAGAAAA+AGG - chr3_2:72343864-72343883 None:intergenic 25.0%
! AACTTAGTTATCAGTAATCA+TGG + chr3_2:72344102-72344121 Msa0422840:intron 25.0%
! ACTTAGTTATCAGTAATCAT+GGG + chr3_2:72344103-72344122 Msa0422840:intron 25.0%
!! GGTCATTCTTACAAAATTTT+AGG + chr3_2:72344124-72344143 Msa0422840:intron 25.0%
! CTAGCAAAAAGAAAAAGAAA+AGG + chr3_2:72344168-72344187 Msa0422840:CDS 25.0%
!! TTTTCATGTTACGTATTATG+CGG - chr3_2:72344202-72344221 None:intergenic 25.0%
! TACAAAAATTTACAAACCTG+TGG - chr3_2:72344293-72344312 None:intergenic 25.0%
! AATCATTGGAAGATTTCAAA+AGG - chr3_2:72344507-72344526 None:intergenic 25.0%
! ATTGTACAAACCAGTAAATA+TGG - chr3_2:72344540-72344559 None:intergenic 25.0%
!! GGATATATTTCTGAAGATAA+GGG - chr3_2:72344653-72344672 None:intergenic 25.0%
!! TGGATATATTTCTGAAGATA+AGG - chr3_2:72344654-72344673 None:intergenic 25.0%
! TTATCTTCAGAAATATATCC+AGG + chr3_2:72344653-72344672 Msa0422840:CDS 25.0%
! CAAATTTAACTAAAGATACC+TGG - chr3_2:72344674-72344693 None:intergenic 25.0%
! CAGGTATCTTTAGTTAAATT+TGG + chr3_2:72344672-72344691 Msa0422840:intron 25.0%
! TTTGTATCCTATTTCATTCA+AGG + chr3_2:72344928-72344947 Msa0422840:intron 25.0%
! AATAACACCTTGAATGAAAT+AGG - chr3_2:72344938-72344957 None:intergenic 25.0%
!!! TTCATTCAAGGTGTTATTTT+TGG + chr3_2:72344940-72344959 Msa0422840:intron 25.0%
! CACAATCAAAATATCAACAT+AGG - chr3_2:72345497-72345516 None:intergenic 25.0%
!!! CTATGTTGATATTTTGATTG+TGG + chr3_2:72345495-72345514 Msa0422840:intron 25.0%
! TGTAAAGAAAAAGCTTAACA+AGG + chr3_2:72346671-72346690 Msa0422840:CDS 25.0%
!! AATTCTAGATGTCATGTTTT+GGG - chr3_2:72346876-72346895 None:intergenic 25.0%
!! AAATTCTAGATGTCATGTTT+TGG - chr3_2:72346877-72346896 None:intergenic 25.0%
! TGTTATATTTGGAGAATCAT+TGG - chr3_2:72346909-72346928 None:intergenic 25.0%
!!! TTTTTTTGTATTGAACAGAC+GGG + chr3_2:72347165-72347184 Msa0422840:intron 25.0%
!!! AGAATGTACCATTTTTTTTC+CGG + chr3_2:72347385-72347404 Msa0422840:three_prime_UTR 25.0%
!! TATTTCTTTTCCTAGTTCAT+TGG + chr3_2:72347547-72347566 Msa0422840:three_prime_UTR 25.0%
TCATCTTTGATTGTAGTGAT+GGG - chr3_2:72341114-72341133 None:intergenic 30.0%
TTCATCTTTGATTGTAGTGA+TGG - chr3_2:72341115-72341134 None:intergenic 30.0%
! TATACTACTTGTTAATCGTG+AGG + chr3_2:72341423-72341442 Msa0422840:CDS 30.0%
!! TGTTGAGTTTGTTATGTGAT+TGG + chr3_2:72341460-72341479 Msa0422840:intron 30.0%
!! GTTTGTTATGTGATTGGAAA+TGG + chr3_2:72341466-72341485 Msa0422840:intron 30.0%
AGATACACTTTCGTTGTTTA+TGG + chr3_2:72341559-72341578 Msa0422840:CDS 30.0%
TTTATGGAGCTTCAAACATT+AGG + chr3_2:72341575-72341594 Msa0422840:CDS 30.0%
ATTAGGTGATAAAAAGCTGA+GGG + chr3_2:72341592-72341611 Msa0422840:CDS 30.0%
! GATTGTGTTTTGTGTTTGTT+TGG + chr3_2:72341762-72341781 Msa0422840:intron 30.0%
CTAACTTAGAATTGTGTGTT+TGG - chr3_2:72341882-72341901 None:intergenic 30.0%
CACAATTCTAAGTTAGTGAA+TGG + chr3_2:72341886-72341905 Msa0422840:intron 30.0%
AAAAAAACAAACCTTGACGA+TGG - chr3_2:72342045-72342064 None:intergenic 30.0%
AAGAATAACTTGAGGTGATT+CGG - chr3_2:72342255-72342274 None:intergenic 30.0%
ACCTCAAGTTATTCTTAGAA+GGG + chr3_2:72342259-72342278 Msa0422840:CDS 30.0%
! TACTCTGTTTGAGTTTAGAA+AGG - chr3_2:72342387-72342406 None:intergenic 30.0%
!! TAAGTTGATATGCACGATAT+TGG + chr3_2:72342414-72342433 Msa0422840:intron 30.0%
TGGCACTTCCAAAAAAATAA+GGG - chr3_2:72342597-72342616 None:intergenic 30.0%
TTGGCACTTCCAAAAAAATA+AGG - chr3_2:72342598-72342617 None:intergenic 30.0%
!!! TATTTTTTTGGAAGTGCCAA+TGG + chr3_2:72342598-72342617 Msa0422840:intron 30.0%
TTATTTATGAACTTGCGTAG+TGG - chr3_2:72342667-72342686 None:intergenic 30.0%
AAGAAAAGAATTCAGATCGA+AGG + chr3_2:72342765-72342784 Msa0422840:intron 30.0%
GCTATGTATTCTATTTACCA+AGG - chr3_2:72342880-72342899 None:intergenic 30.0%
CTTGCTTATTTGCTCATTTA+AGG - chr3_2:72342974-72342993 None:intergenic 30.0%
GTGATTAATATCGAATGATG+TGG + chr3_2:72343079-72343098 Msa0422840:intron 30.0%
ATATCATTTGGGTAGTATAG+GGG + chr3_2:72343106-72343125 Msa0422840:intron 30.0%
GATTAGATAGACAAGAAAAG+TGG + chr3_2:72343144-72343163 Msa0422840:intron 30.0%
!! ATAGCTTTGGAAAAAAAGGA+AGG + chr3_2:72343332-72343351 Msa0422840:intron 30.0%
TACAAAATCCTCCTAATTTG+GGG + chr3_2:72343405-72343424 Msa0422840:intron 30.0%
GAACTCAAAAATTGTATTGG+AGG + chr3_2:72343428-72343447 Msa0422840:intron 30.0%
TTCAATCTCTGTATATGTGT+GGG - chr3_2:72343710-72343729 None:intergenic 30.0%
TAACAAGAAATGCTTGGTTA+TGG + chr3_2:72343771-72343790 Msa0422840:intron 30.0%
TCATATGAGATAAGGATGTT+AGG + chr3_2:72343953-72343972 Msa0422840:intron 30.0%
! CATAGAATCAAGTTGTTGAT+TGG - chr3_2:72344359-72344378 None:intergenic 30.0%
TTGATTCTATGTGATCTACA+GGG + chr3_2:72344368-72344387 Msa0422840:intron 30.0%
! ATAATATAGGCATGTTGCTT+TGG - chr3_2:72344463-72344482 None:intergenic 30.0%
ATGGAGTCTTCAATAATCAT+TGG - chr3_2:72344521-72344540 None:intergenic 30.0%
ATTGAAGACTCCATATTTAC+TGG + chr3_2:72344527-72344546 Msa0422840:intron 30.0%
ATTTGTAACATCTCGTTGAT+GGG - chr3_2:72344763-72344782 None:intergenic 30.0%
AATTTGTAACATCTCGTTGA+TGG - chr3_2:72344764-72344783 None:intergenic 30.0%
!!! ACCAGTTTTGTTTTTATCGT+TGG + chr3_2:72344844-72344863 Msa0422840:intron 30.0%
ACCAACGATAAAAACAAAAC+TGG - chr3_2:72344848-72344867 None:intergenic 30.0%
!!! AGTTTTGTTTTTATCGTTGG+TGG + chr3_2:72344847-72344866 Msa0422840:intron 30.0%
AAGATTGAAATAAAGACCTC+TGG - chr3_2:72345041-72345060 None:intergenic 30.0%
TATCATTTGATATAGTGCTG+CGG + chr3_2:72345063-72345082 Msa0422840:intron 30.0%
! TGAGTTTGGTTGATATGTTT+AGG + chr3_2:72345127-72345146 Msa0422840:intron 30.0%
AAAATTTCAGTACTTACCAG+TGG - chr3_2:72345200-72345219 None:intergenic 30.0%
!!! TGGTAAGTACTGAAATTTTC+CGG + chr3_2:72345201-72345220 Msa0422840:intron 30.0%
GCAAAATGCATATATTTCCA+AGG - chr3_2:72345228-72345247 None:intergenic 30.0%
ACTAATGAAAGAACACATGT+AGG - chr3_2:72345355-72345374 None:intergenic 30.0%
!!! CAGGATATAGTTTTAAGCAA+AGG - chr3_2:72345439-72345458 None:intergenic 30.0%
ATGAAGTTAACAGAAAACAC+AGG - chr3_2:72345458-72345477 None:intergenic 30.0%
AAAATATCAACATAGGACGA+AGG - chr3_2:72345490-72345509 None:intergenic 30.0%
CTCATGTGACTTCTTATATA+GGG - chr3_2:72345559-72345578 None:intergenic 30.0%
TCTCATGTGACTTCTTATAT+AGG - chr3_2:72345560-72345579 None:intergenic 30.0%
TATAAGAAGTCACATGAGAA+AGG + chr3_2:72345561-72345580 Msa0422840:CDS 30.0%
CAAACAACATTAATCAAGTG+TGG - chr3_2:72345696-72345715 None:intergenic 30.0%
! GATTAATGTTGTTTGTTTGC+AGG + chr3_2:72345701-72345720 Msa0422840:intron 30.0%
TAAAAGACTCAGCAAAAAAG+AGG + chr3_2:72346177-72346196 Msa0422840:CDS 30.0%
! AGAATTCCATCTTCATTTTC+TGG - chr3_2:72346296-72346315 None:intergenic 30.0%
!!! AATTTTAGCTTGCTGATAAG+AGG - chr3_2:72346365-72346384 None:intergenic 30.0%
CATGACAAAAAGAGAAAACA+CGG + chr3_2:72346606-72346625 Msa0422840:intron 30.0%
ATGACAAAAAGAGAAAACAC+GGG + chr3_2:72346607-72346626 Msa0422840:intron 30.0%
AAAGAAAAAGCTTAACAAGG+AGG + chr3_2:72346674-72346693 Msa0422840:CDS 30.0%
ATTCTCCAAATATAACAGTG+TGG + chr3_2:72346912-72346931 Msa0422840:intron 30.0%
TATTGCCACACTGTTATATT+TGG - chr3_2:72346920-72346939 None:intergenic 30.0%
! TGTGGTTCTGTTTATCAATT+TGG - chr3_2:72346977-72346996 None:intergenic 30.0%
!! TAACATTTTGATCAACTGAC+TGG - chr3_2:72347009-72347028 None:intergenic 30.0%
TTCTTTCTCTTTGCAACTAA+CGG - chr3_2:72347231-72347250 None:intergenic 30.0%
CAAGAACTAAGATAGAGAAA+AGG + chr3_2:72347256-72347275 Msa0422840:CDS 30.0%
CTTAACATAAAATAGAGGTC+CGG - chr3_2:72347407-72347426 None:intergenic 30.0%
! GTTGGCTTAACATAAAATAG+AGG - chr3_2:72347412-72347431 None:intergenic 30.0%
AAGAAATAAATGTCTTCCTC+TGG - chr3_2:72347535-72347554 None:intergenic 30.0%
! TTGTTGTTGGAAGAGTTCAA+GGG - chr3_2:72341197-72341216 None:intergenic 35.0%
! ATTGTTGTTGGAAGAGTTCA+AGG - chr3_2:72341198-72341217 None:intergenic 35.0%
ATGAACTTCACTTCCATTTC+CGG + chr3_2:72341223-72341242 Msa0422840:CDS 35.0%
CATTAGGTGATAAAAAGCTG+AGG + chr3_2:72341591-72341610 Msa0422840:CDS 35.0%
! ACGTATGAACCAAAAGCATA+AGG + chr3_2:72341649-72341668 Msa0422840:CDS 35.0%
!! AAAGAATGTTCTGAAGTGCA+CGG - chr3_2:72341688-72341707 None:intergenic 35.0%
! CATTCTTTTTGTCATGTTGC+AGG + chr3_2:72341700-72341719 Msa0422840:CDS 35.0%
! GTCAATGTTTCTACGTTGTT+TGG + chr3_2:72341726-72341745 Msa0422840:intron 35.0%
TGCTTTCATCATCACTATCT+TGG - chr3_2:72342217-72342236 None:intergenic 35.0%
CACCTCAAGTTATTCTTAGA+AGG + chr3_2:72342258-72342277 Msa0422840:CDS 35.0%
! TCCCTTCTAAGAATAACTTG+AGG - chr3_2:72342263-72342282 None:intergenic 35.0%
AGTTATTCTTAGAAGGGAGA+CGG + chr3_2:72342265-72342284 Msa0422840:CDS 35.0%
TGCAACAAAGATCAGATCTA+CGG + chr3_2:72342687-72342706 Msa0422840:intron 35.0%
! AAGAAATAATTTGGGGCTGA+GGG + chr3_2:72343042-72343061 Msa0422840:intron 35.0%
GATATGACTTCAGATGAAGA+TGG - chr3_2:72343197-72343216 None:intergenic 35.0%
!! TTAGGCTTTGTTTGTGAGTT+TGG + chr3_2:72343294-72343313 Msa0422840:intron 35.0%
ACAAAATCCTCCTAATTTGG+GGG + chr3_2:72343406-72343425 Msa0422840:intron 35.0%
!!! TTTTTGAGTTCCCCCAAATT+AGG - chr3_2:72343419-72343438 None:intergenic 35.0%
GGGGAACTCAAAAATTGTAT+TGG + chr3_2:72343425-72343444 Msa0422840:intron 35.0%
CTCAAAAATTGTATTGGAGG+AGG + chr3_2:72343431-72343450 Msa0422840:intron 35.0%
! ATTGTATTGGAGGAGGATTT+TGG + chr3_2:72343438-72343457 Msa0422840:intron 35.0%
TTAAATTGCGTTCTCTAGTC+CGG + chr3_2:72343681-72343700 Msa0422840:intron 35.0%
GTTCAATCTCTGTATATGTG+TGG - chr3_2:72343711-72343730 None:intergenic 35.0%
TGGCAAATATCACTTATACG+AGG + chr3_2:72343791-72343810 Msa0422840:intron 35.0%
GAGGAAAAAAAATGTCTGAC+CGG + chr3_2:72343810-72343829 Msa0422840:intron 35.0%
ATTTGAGCTGAATTCTCTTC+CGG - chr3_2:72343832-72343851 None:intergenic 35.0%
AACTTGAAGCTAAGTTTGGA+GGG - chr3_2:72343913-72343932 None:intergenic 35.0%
AAGGAACTTGAAGCTAAGTT+TGG - chr3_2:72343917-72343936 None:intergenic 35.0%
AACTTGAAGCTAAGTTTGGA+TGG - chr3_2:72343913-72343932 None:intergenic 35.0%
AAGGAACTTGAAGCTAAGTT+TGG - chr3_2:72343917-72343936 None:intergenic 35.0%
AACATGAAAAAGAAAGAGCG+CGG + chr3_2:72344212-72344231 Msa0422840:CDS 35.0%
! AAACCTGTGGATCTTTAAGA+TGG - chr3_2:72344280-72344299 None:intergenic 35.0%
CTTGATTCTATGTGATCTAC+AGG + chr3_2:72344367-72344386 Msa0422840:intron 35.0%
AAAGTGATAGCTCGAACAAT+TGG + chr3_2:72344597-72344616 Msa0422840:CDS 35.0%
AAGTGATAGCTCGAACAATT+GGG + chr3_2:72344598-72344617 Msa0422840:CDS 35.0%
TTTGTAACATCTCGTTGATG+GGG - chr3_2:72344762-72344781 None:intergenic 35.0%
TACAAATTTGATTGCAGCAG+CGG + chr3_2:72344776-72344795 Msa0422840:CDS 35.0%
CAATATGCAGTACCATATCA+TGG - chr3_2:72344812-72344831 None:intergenic 35.0%
!!! AAGGTGTTATTTTTGGATGC+AGG + chr3_2:72344947-72344966 Msa0422840:intron 35.0%
! TGCGGACTTTTTATTATGAC+AGG + chr3_2:72345081-72345100 Msa0422840:intron 35.0%
TATGTTTAGGCTATCACTGT+TGG + chr3_2:72345140-72345159 Msa0422840:intron 35.0%
TGTTGGAATAAATGCAGTCA+GGG + chr3_2:72345157-72345176 Msa0422840:CDS 35.0%
ATGCATATATTTCCAAGGAC+CGG - chr3_2:72345223-72345242 None:intergenic 35.0%
TAGATAAAACCAACCCTTGT+TGG - chr3_2:72345285-72345304 None:intergenic 35.0%
!!! AAGGGTTGGTTTTATCTAGT+AGG + chr3_2:72345287-72345306 Msa0422840:intron 35.0%
! CATACTGAACAAAGTACTCA+TGG - chr3_2:72345385-72345404 None:intergenic 35.0%
TCTCATTACATTATTCCGAG+AGG + chr3_2:72345605-72345624 Msa0422840:CDS 35.0%
! ATTACCGTAACTCTTTTGTG+TGG + chr3_2:72345630-72345649 Msa0422840:intron 35.0%
! TTACCGTAACTCTTTTGTGT+GGG + chr3_2:72345631-72345650 Msa0422840:intron 35.0%
CCTTCTTAATTAGCAGTGAA+GGG - chr3_2:72345731-72345750 None:intergenic 35.0%
TCCTTCTTAATTAGCAGTGA+AGG - chr3_2:72345732-72345751 None:intergenic 35.0%
TTATGGAGAAGTCAATGTTG+CGG + chr3_2:72345791-72345810 Msa0422840:CDS 35.0%
!! TATTGATGATGATGTTGAGC+AGG + chr3_2:72345845-72345864 Msa0422840:CDS 35.0%
AGTTCTCATTCTGATGATTG+CGG + chr3_2:72345870-72345889 Msa0422840:CDS 35.0%
TGATTCACCATCATGATCTT+CGG - chr3_2:72345991-72346010 None:intergenic 35.0%
! CGTGTTTTCTCTTTTTGTCA+TGG - chr3_2:72346608-72346627 None:intergenic 35.0%
TATTTATGTGTGCACCTTCT+AGG + chr3_2:72346644-72346663 Msa0422840:intron 35.0%
TTTCTTTACATGAGCCTAGA+AGG - chr3_2:72346661-72346680 None:intergenic 35.0%
!! TTTGGAGAATCATTGGTTTG+TGG - chr3_2:72346902-72346921 None:intergenic 35.0%
!!! ACTGACTGGTTTTAATAGTG+TGG - chr3_2:72346995-72347014 None:intergenic 35.0%
GATTGCACTCTAATCCAATA+TGG + chr3_2:72347134-72347153 Msa0422840:intron 35.0%
TGGTCTAAGTAACAAGCAAA+AGG + chr3_2:72347188-72347207 Msa0422840:CDS 35.0%
GTTAGTTGCAAAGAGAAAGA+AGG + chr3_2:72347230-72347249 Msa0422840:CDS 35.0%
AGAAAAGGATAAAACAGCAG+CGG + chr3_2:72347271-72347290 Msa0422840:CDS 35.0%
ATAGAGGTCCGGAAAAAAAA+TGG - chr3_2:72347396-72347415 None:intergenic 35.0%
! TTTTCGGATTTTAGACCGGA+GGG - chr3_2:72341082-72341101 None:intergenic 40.0%
! GAGCTTTTCGGATTTTAGAC+CGG - chr3_2:72341086-72341105 None:intergenic 40.0%
! TCTTTGATTGTAGTGATGGG+AGG - chr3_2:72341111-72341130 None:intergenic 40.0%
! TGAATTGACTGCGGATTAAG+AGG - chr3_2:72341168-72341187 None:intergenic 40.0%
AATGGAAGTGAAGTTCATGG+CGG - chr3_2:72341221-72341240 None:intergenic 40.0%
GGAAATGGAAGTGAAGTTCA+TGG - chr3_2:72341224-72341243 None:intergenic 40.0%
!! AGAGAGGAACATGGCTTTAT+CGG - chr3_2:72341284-72341303 None:intergenic 40.0%
! GTTTGTTAGGGAATTCAGAG+AGG - chr3_2:72341333-72341352 None:intergenic 40.0%
AAATCGTTACGAAGTCCAGA+AGG - chr3_2:72341391-72341410 None:intergenic 40.0%
GGAAATGGAAAGTTGTGTGT+TGG + chr3_2:72341481-72341500 Msa0422840:intron 40.0%
! TGGCTTCATCCTTATGCTTT+TGG - chr3_2:72341661-72341680 None:intergenic 40.0%
AATAGCAAGAGGATGAAGAC+CGG + chr3_2:72341923-72341942 Msa0422840:intron 40.0%
TATGTGAGCTTCACAAGAGA+CGG + chr3_2:72341968-72341987 Msa0422840:CDS 40.0%
AAACAAACCTTGACGATGGA+TGG - chr3_2:72342041-72342060 None:intergenic 40.0%
TAGAAGGGAGACGGTTTATA+AGG + chr3_2:72342274-72342293 Msa0422840:CDS 40.0%
TTTAGAAGTTCAGAAGAGGG+TGG + chr3_2:72342458-72342477 Msa0422840:intron 40.0%
TTAGAAGTTCAGAAGAGGGT+GGG + chr3_2:72342459-72342478 Msa0422840:intron 40.0%
!! TGGGTGAAATTTTGATGCAG+CGG + chr3_2:72342484-72342503 Msa0422840:intron 40.0%
!! GAAATTTTGATGCAGCGGAA+AGG + chr3_2:72342489-72342508 Msa0422840:intron 40.0%
!!! GAGTCGAGCCCTTATTTTTT+TGG + chr3_2:72342586-72342605 Msa0422840:intron 40.0%
TTGAGCATGCTTTAACACCT+TGG + chr3_2:72342860-72342879 Msa0422840:intron 40.0%
GCTTCTATGAATGCTAACTC+AGG - chr3_2:72342998-72343017 None:intergenic 40.0%
! GAAGAAATAATTTGGGGCTG+AGG + chr3_2:72343041-72343060 Msa0422840:intron 40.0%
!! AGAAAAGTGGACTGTTCTTG+AGG + chr3_2:72343157-72343176 Msa0422840:intron 40.0%
!! GAAAAGTGGACTGTTCTTGA+GGG + chr3_2:72343158-72343177 Msa0422840:intron 40.0%
!! AAAAGTGGACTGTTCTTGAG+GGG + chr3_2:72343159-72343178 Msa0422840:intron 40.0%
!! GCTTTGTTTGTGAGTTTGGA+GGG + chr3_2:72343298-72343317 Msa0422840:intron 40.0%
!! GGGGATAGCTTTGGAAAAAA+AGG + chr3_2:72343328-72343347 Msa0422840:intron 40.0%
GAAAAAAAGGAAGGAGCAGA+TGG + chr3_2:72343341-72343360 Msa0422840:intron 40.0%
! TATTGGAGGAGGATTTTGGA+GGG + chr3_2:72343442-72343461 Msa0422840:intron 40.0%
GTGGGAAATATAGGGGAAAT+TGG - chr3_2:72343594-72343613 None:intergenic 40.0%
TTTGGGAGGTGGGAAATATA+GGG - chr3_2:72343602-72343621 None:intergenic 40.0%
TCTGTATATGTGTGGGATAC+CGG - chr3_2:72343703-72343722 None:intergenic 40.0%
GAGATTGAACTCAATAGTGC+AGG + chr3_2:72343721-72343740 Msa0422840:intron 40.0%
GGAAGAGAATTCAGCTCAAA+TGG + chr3_2:72343831-72343850 Msa0422840:intron 40.0%
GAACTTGAAGCTAAGTTTGG+AGG - chr3_2:72343914-72343933 None:intergenic 40.0%
GCACTCGTTCATATGAGATA+AGG + chr3_2:72343945-72343964 Msa0422840:intron 40.0%
TGAAGCTAAGTTTGGATGGA+GGG - chr3_2:72343986-72344005 None:intergenic 40.0%
TTGAAGCTAAGTTTGGATGG+AGG - chr3_2:72343987-72344006 None:intergenic 40.0%
CATCCTTATCTCCTATGAAC+GGG - chr3_2:72344028-72344047 None:intergenic 40.0%
GCATCCTTATCTCCTATGAA+CGG - chr3_2:72344029-72344048 None:intergenic 40.0%
TCATAGGAGATAAGGATGCT+AGG + chr3_2:72344030-72344049 Msa0422840:intron 40.0%
! AAATTTTAGGCAAGCCACCA+AGG + chr3_2:72344137-72344156 Msa0422840:intron 40.0%
! TTTTGCTAGCTGATGTACCT+TGG - chr3_2:72344157-72344176 None:intergenic 40.0%
!! GGATCTTTAAGATGGTTGAG+TGG - chr3_2:72344272-72344291 None:intergenic 40.0%
CAACCATCTTAAAGATCCAC+AGG + chr3_2:72344274-72344293 Msa0422840:CDS 40.0%
GGATAGAGCAAAATGCAAAC+AGG - chr3_2:72344338-72344357 None:intergenic 40.0%
! ATGTGATCTACAGGGTTTTG+TGG + chr3_2:72344376-72344395 Msa0422840:intron 40.0%
GAAATGCAATGAGCGATTTG+AGG + chr3_2:72344421-72344440 Msa0422840:CDS 40.0%
!! CAGGAGTACTCAACTTTGAT+TGG + chr3_2:72345100-72345119 Msa0422840:intron 40.0%
! CTTTGATTGGCTGATGAGTT+TGG + chr3_2:72345113-72345132 Msa0422840:intron 40.0%
CTGTTGGAATAAATGCAGTC+AGG + chr3_2:72345156-72345175 Msa0422840:CDS 40.0%
! TACTGAAATTTTCCGGTCCT+TGG + chr3_2:72345208-72345227 Msa0422840:intron 40.0%
TATATCTTGCGCATCCAACA+AGG + chr3_2:72345268-72345287 Msa0422840:intron 40.0%
ATATCTTGCGCATCCAACAA+GGG + chr3_2:72345269-72345288 Msa0422840:intron 40.0%
ACTAAGCTGACTAAAAGTCC+TGG + chr3_2:72345315-72345334 Msa0422840:intron 40.0%
TAGGAATCAAACTCAAGACC+AGG - chr3_2:72345336-72345355 None:intergenic 40.0%
AAAGGAGTTATCCCATTCCA+AGG - chr3_2:72345421-72345440 None:intergenic 40.0%
TATCAACATAGGACGAAGGA+AGG - chr3_2:72345486-72345505 None:intergenic 40.0%
GTGACTTCTTATATAGGGCA+AGG - chr3_2:72345554-72345573 None:intergenic 40.0%
GAGTTACGGTAATTACCTCT+CGG - chr3_2:72345623-72345642 None:intergenic 40.0%
! TACCGTAACTCTTTTGTGTG+GGG + chr3_2:72345632-72345651 Msa0422840:intron 40.0%
!! TGAGTATGAGAGTGCTATTG+TGG - chr3_2:72345669-72345688 None:intergenic 40.0%
CCCTTCACTGCTAATTAAGA+AGG + chr3_2:72345728-72345747 Msa0422840:CDS 40.0%
TGCTAATTAAGAAGGACCGA+GGG + chr3_2:72345736-72345755 Msa0422840:CDS 40.0%
TTGACTTCTCCATAAGCCTT+TGG - chr3_2:72345786-72345805 None:intergenic 40.0%
AAATGAGCAGGAAGATGATC+AGG + chr3_2:72345899-72345918 Msa0422840:CDS 40.0%
! AGTTCTGATTACGAAACCAG+TGG + chr3_2:72346029-72346048 Msa0422840:CDS 40.0%
ATTATCAGCATCATCACCAC+TGG - chr3_2:72346048-72346067 None:intergenic 40.0%
TGATCTAGAAGACAGTGAAG+AGG + chr3_2:72346070-72346089 Msa0422840:CDS 40.0%
ATTTCGGAACATGAAGGAGA+TGG + chr3_2:72346113-72346132 Msa0422840:CDS 40.0%
GATGGTGATCTGCATATTCT+TGG + chr3_2:72346131-72346150 Msa0422840:CDS 40.0%
TCTGCATATTCTTGGAAGTG+TGG + chr3_2:72346139-72346158 Msa0422840:CDS 40.0%
!! TCCATCTTCATTTTCTGGCA+GGG - chr3_2:72346291-72346310 None:intergenic 40.0%
!! TTCCATCTTCATTTTCTGGC+AGG - chr3_2:72346292-72346311 None:intergenic 40.0%
! TGCAGTTCTTGCTTCGTTTT+TGG - chr3_2:72346439-72346458 None:intergenic 40.0%
! ATTCCAAGCTCTGATCAACT+AGG + chr3_2:72346498-72346517 Msa0422840:CDS 40.0%
AAACCTAGTTGATCAGAGCT+TGG - chr3_2:72346504-72346523 None:intergenic 40.0%
! TCAACTAGGTTTAAAGCGAG+TGG + chr3_2:72346512-72346531 Msa0422840:CDS 40.0%
AGAGCTACTTACTTCAAGCA+TGG - chr3_2:72346544-72346563 None:intergenic 40.0%
AAAAGCTTAACAAGGAGGAG+AGG + chr3_2:72346679-72346698 Msa0422840:CDS 40.0%
! TTTTGTATTGAACAGACGGG+TGG + chr3_2:72347168-72347187 Msa0422840:intron 40.0%
AGTTGCAAAGAGAAAGAAGG+TGG + chr3_2:72347233-72347252 Msa0422840:CDS 40.0%
GATTTGATTCTGCATTCCAG+AGG + chr3_2:72347516-72347535 Msa0422840:three_prime_UTR 40.0%
! TTTCGGATTTTAGACCGGAG+GGG - chr3_2:72341081-72341100 None:intergenic 45.0%
! CTTTTCGGATTTTAGACCGG+AGG - chr3_2:72341083-72341102 None:intergenic 45.0%
AAGATGAAATGCGACCCTGA+AGG + chr3_2:72341127-72341146 Msa0422840:CDS 45.0%
! ACTGCGGATTAAGAGGAGTT+CGG - chr3_2:72341161-72341180 None:intergenic 45.0%
GGGAGGAATTGAATTGACTG+CGG - chr3_2:72341177-72341196 None:intergenic 45.0%
TTGTTGGAAGAGTTCAAGGG+AGG - chr3_2:72341194-72341213 None:intergenic 45.0%
!! AGTTCATGGCGGATTGTTGT+TGG - chr3_2:72341210-72341229 None:intergenic 45.0%
!! AGAGAGGTGTTGAGGGTAAA+AGG - chr3_2:72341317-72341336 None:intergenic 45.0%
!! GGAATTCAGAGAGGTGTTGA+GGG - chr3_2:72341324-72341343 None:intergenic 45.0%
!! GCAACTCAGCGAGTTTGTTA+GGG - chr3_2:72341345-72341364 None:intergenic 45.0%
! AGCAACTCAGCGAGTTTGTT+AGG - chr3_2:72341346-72341365 None:intergenic 45.0%
!!! GTTCTGAAGTGCACGGTTTT+TGG - chr3_2:72341681-72341700 None:intergenic 45.0%
ATAGCAAGAGGATGAAGACC+GGG + chr3_2:72341924-72341943 Msa0422840:intron 45.0%
AAACCTTGACGATGGATGGA+AGG - chr3_2:72342037-72342056 None:intergenic 45.0%
! TGATGATGAAAGCAGTGACG+AGG + chr3_2:72342223-72342242 Msa0422840:CDS 45.0%
GAGACGGTTTATAAGGTGAG+AGG + chr3_2:72342281-72342300 Msa0422840:intron 45.0%
TAGAAGTTCAGAAGAGGGTG+GGG + chr3_2:72342460-72342479 Msa0422840:intron 45.0%
TTCTTGAGGGGATTGACAGA+GGG + chr3_2:72343171-72343190 Msa0422840:intron 45.0%
!! GGCTTTGTTTGTGAGTTTGG+AGG + chr3_2:72343297-72343316 Msa0422840:intron 45.0%
GTTTGTGAGTTTGGAGGGAA+AGG + chr3_2:72343303-72343322 Msa0422840:intron 45.0%
GAGCAGATGGAAGAAGTTGA+GGG + chr3_2:72343354-72343373 Msa0422840:intron 45.0%
! TGGAAGAAGTTGAGGGCTTT+TGG + chr3_2:72343361-72343380 Msa0422840:intron 45.0%
! GGAAGAAGTTGAGGGCTTTT+GGG + chr3_2:72343362-72343381 Msa0422840:intron 45.0%
! GAAGAAGTTGAGGGCTTTTG+GGG + chr3_2:72343363-72343382 Msa0422840:intron 45.0%
! AAGAAGTTGAGGGCTTTTGG+GGG + chr3_2:72343364-72343383 Msa0422840:intron 45.0%
TTGAGTTCCCCCAAATTAGG+AGG - chr3_2:72343416-72343435 None:intergenic 45.0%
! GTATTGGAGGAGGATTTTGG+AGG + chr3_2:72343441-72343460 Msa0422840:intron 45.0%
TTGGGAGGTGGGAAATATAG+GGG - chr3_2:72343601-72343620 None:intergenic 45.0%
! CTTTGGGAGGTGGGAAATAT+AGG - chr3_2:72343603-72343622 None:intergenic 45.0%
TTTGGGAGTTCGAACAGAAG+GGG - chr3_2:72343630-72343649 None:intergenic 45.0%
GTTTGGGAGTTCGAACAGAA+GGG - chr3_2:72343631-72343650 None:intergenic 45.0%
TGTTTGGGAGTTCGAACAGA+AGG - chr3_2:72343632-72343651 None:intergenic 45.0%
GAACTCCCAAACAAAGCCTT+GGG + chr3_2:72343639-72343658 Msa0422840:intron 45.0%
AACTCCCAAACAAAGCCTTG+GGG + chr3_2:72343640-72343659 Msa0422840:intron 45.0%
!! TAGACCCCAAGGCTTTGTTT+GGG - chr3_2:72343647-72343666 None:intergenic 45.0%
!! ATAGACCCCAAGGCTTTGTT+TGG - chr3_2:72343648-72343667 None:intergenic 45.0%
AAAGCCTTGGGGTCTATCTT+TGG + chr3_2:72343651-72343670 Msa0422840:intron 45.0%
AAGCCTTGGGGTCTATCTTT+GGG + chr3_2:72343652-72343671 Msa0422840:intron 45.0%
AAACCCAAAGATAGACCCCA+AGG - chr3_2:72343658-72343677 None:intergenic 45.0%
TGAAGCTAAGTTTGGAGGGA+GGG - chr3_2:72343909-72343928 None:intergenic 45.0%
TTGAAGCTAAGTTTGGAGGG+AGG - chr3_2:72343910-72343929 None:intergenic 45.0%
TGAACGAGTGCAAGTGCAAA+AGG - chr3_2:72343936-72343955 None:intergenic 45.0%
TGAACGGGTGCAAGTACAAA+AGG - chr3_2:72344013-72344032 None:intergenic 45.0%
TTGTACTTGCACCCGTTCAT+AGG + chr3_2:72344014-72344033 Msa0422840:intron 45.0%
TGTTCAGTATGCTTGTAGCG+TGG + chr3_2:72345394-72345413 Msa0422840:intron 45.0%
ATAGGGCAAGGTCTTGAAGT+AGG - chr3_2:72345542-72345561 None:intergenic 45.0%
! ACCGTAACTCTTTTGTGTGG+GGG + chr3_2:72345633-72345652 Msa0422840:intron 45.0%
CTGCTAATTAAGAAGGACCG+AGG + chr3_2:72345735-72345754 Msa0422840:CDS 45.0%
TAATTAAGAAGGACCGAGGG+AGG + chr3_2:72345739-72345758 Msa0422840:CDS 45.0%
!! TAAGCCTTTGGTCTTGCCTT+GGG - chr3_2:72345774-72345793 None:intergenic 45.0%
!! ATAAGCCTTTGGTCTTGCCT+TGG - chr3_2:72345775-72345794 None:intergenic 45.0%
AAGGCAAGACCAAAGGCTTA+TGG + chr3_2:72345774-72345793 Msa0422840:CDS 45.0%
TTGCGGTTCAGAAAATGAGC+AGG + chr3_2:72345887-72345906 Msa0422840:CDS 45.0%
CAGCTAGGCAGTGATAATAC+CGG + chr3_2:72345948-72345967 Msa0422840:CDS 45.0%
GGCTTCATCATCATCACTTC+CGG - chr3_2:72345970-72345989 None:intergenic 45.0%
GATGAAGCCGAAGATCATGA+TGG + chr3_2:72345981-72346000 Msa0422840:CDS 45.0%
!! TGAAGAGGATGGTGGGATTT+CGG + chr3_2:72346097-72346116 Msa0422840:CDS 45.0%
TTTCCAATGCAGACTTCCAG+AGG + chr3_2:72346315-72346334 Msa0422840:CDS 45.0%
! CCTTTAGTTCCTTGATCCTC+TGG - chr3_2:72346334-72346353 None:intergenic 45.0%
CCAGAGGATCAAGGAACTAA+AGG + chr3_2:72346331-72346350 Msa0422840:CDS 45.0%
! CTAGGTTTAAAGCGAGTGGA+TGG + chr3_2:72346516-72346535 Msa0422840:CDS 45.0%
AGCGGCTGTCAAACAGAAAA+AGG + chr3_2:72346752-72346771 Msa0422840:CDS 45.0%
GGTCTGGTAAACAACAACGT+GGG + chr3_2:72347292-72347311 Msa0422840:CDS 45.0%
! AGCTTCTCGTTGATTGCAGT+TGG - chr3_2:72347430-72347449 None:intergenic 45.0%
!!! TTTTTTTTTTTTTAAATATC+AGG + chr3_2:72342108-72342127 Msa0422840:intron 5.0%
!!! TTTTTTATATTAAATTTTGA+TGG + chr3_2:72347464-72347483 Msa0422840:three_prime_UTR 5.0%
! TGATGGGAGGCTGAGCTTTT+CGG - chr3_2:72341098-72341117 None:intergenic 50.0%
GTTCGGATTCGTAGCCTTCA+GGG - chr3_2:72341144-72341163 None:intergenic 50.0%
AGTTCGGATTCGTAGCCTTC+AGG - chr3_2:72341145-72341164 None:intergenic 50.0%
! GGCTTTATCGGCGAGATCTT+TGG - chr3_2:72341272-72341291 None:intergenic 50.0%
AAAAGGAGGTGAGGTGAGAG+AGG - chr3_2:72341300-72341319 None:intergenic 50.0%
GTTGAGGGTAAAAGGAGGTG+AGG - chr3_2:72341309-72341328 None:intergenic 50.0%
!! GAGGTGTTGAGGGTAAAAGG+AGG - chr3_2:72341314-72341333 None:intergenic 50.0%
!! GGGAATTCAGAGAGGTGTTG+AGG - chr3_2:72341325-72341344 None:intergenic 50.0%
AGCTTCACAAGAGACGGACA+TGG + chr3_2:72341974-72341993 Msa0422840:CDS 50.0%
CTTCCTTCCATCCATCGTCA+AGG + chr3_2:72342031-72342050 Msa0422840:CDS 50.0%
GTTCTTGAGGGGATTGACAG+AGG + chr3_2:72343170-72343189 Msa0422840:intron 50.0%
TGAGTTTGGAGGGAAAGGCA+GGG + chr3_2:72343308-72343327 Msa0422840:intron 50.0%
GGAGCAGATGGAAGAAGTTG+AGG + chr3_2:72343353-72343372 Msa0422840:intron 50.0%
CGAACTCCCAAACAAAGCCT+TGG + chr3_2:72343638-72343657 Msa0422840:intron 50.0%
GCACCCGTTCATAGGAGATA+AGG + chr3_2:72344022-72344041 Msa0422840:intron 50.0%
TGCTAGCTGATGTACCTTGG+TGG - chr3_2:72344154-72344173 None:intergenic 50.0%
! AAGAGCGCGGATCATCTGAA+AGG + chr3_2:72344225-72344244 Msa0422840:CDS 50.0%
! TAACATCTCGTTGATGGGGC+TGG - chr3_2:72344758-72344777 None:intergenic 50.0%
TTTGATTGCAGCAGCGGTTC+AGG + chr3_2:72344782-72344801 Msa0422840:CDS 50.0%
GGTTCAGGCTTGCCATGATA+TGG + chr3_2:72344797-72344816 Msa0422840:CDS 50.0%
AACAAGGGCTCAACTGCATC+AGG - chr3_2:72344978-72344997 None:intergenic 50.0%
TAAAGACCTCTGGACGTGAG+CGG - chr3_2:72345031-72345050 None:intergenic 50.0%
TACTTACCAGTGGCATACGC+AGG - chr3_2:72345190-72345209 None:intergenic 50.0%
TATGCTTGTAGCGTGGTCCT+TGG + chr3_2:72345401-72345420 Msa0422840:intron 50.0%
TTGTAGCGTGGTCCTTGGAA+TGG + chr3_2:72345406-72345425 Msa0422840:intron 50.0%
TGTAGCGTGGTCCTTGGAAT+GGG + chr3_2:72345407-72345426 Msa0422840:intron 50.0%
CCCCCCACACAAAAGAGTTA+CGG - chr3_2:72345637-72345656 None:intergenic 50.0%
! CCGTAACTCTTTTGTGTGGG+GGG + chr3_2:72345634-72345653 Msa0422840:intron 50.0%
!! AAGCCTTTGGTCTTGCCTTG+GGG - chr3_2:72345773-72345792 None:intergenic 50.0%
ATCTGCAACAACTCAGCACC+AGG - chr3_2:72345825-72345844 None:intergenic 50.0%
TCTGACGATGACAACCAGCT+AGG + chr3_2:72345933-72345952 Msa0422840:CDS 50.0%
CGGTATTATCACTGCCTAGC+TGG - chr3_2:72345950-72345969 None:intergenic 50.0%
CAGTGAAGAGGCTGATGAAG+AGG + chr3_2:72346082-72346101 Msa0422840:CDS 50.0%
GAAGAGGCTGATGAAGAGGA+TGG + chr3_2:72346086-72346105 Msa0422840:CDS 50.0%
AGGCTGATGAAGAGGATGGT+GGG + chr3_2:72346090-72346109 Msa0422840:CDS 50.0%
GGTGGGATTTCGGAACATGA+AGG + chr3_2:72346107-72346126 Msa0422840:CDS 50.0%
!! CAGCTGCTGATTCAAGTCTC+CGG + chr3_2:72346228-72346247 Msa0422840:CDS 50.0%
!! AGCTGCTGATTCAAGTCTCC+GGG + chr3_2:72346229-72346248 Msa0422840:CDS 50.0%
!! TCTCCGGGCTTTGAAGAAGT+TGG + chr3_2:72346244-72346263 Msa0422840:CDS 50.0%
CTGCCAACTTCTTCAAAGCC+CGG - chr3_2:72346250-72346269 None:intergenic 50.0%
!! GGGCTTTGAAGAAGTTGGCA+GGG + chr3_2:72346249-72346268 Msa0422840:CDS 50.0%
GAAGTTGGCAGGGACAACAA+TGG + chr3_2:72346259-72346278 Msa0422840:CDS 50.0%
GCCCTGCCAGAAAATGAAGA+TGG + chr3_2:72346287-72346306 Msa0422840:CDS 50.0%
! GATCCTCTGGAAGTCTGCAT+TGG - chr3_2:72346321-72346340 None:intergenic 50.0%
TGCAGACTTCCAGAGGATCA+AGG + chr3_2:72346322-72346341 Msa0422840:CDS 50.0%
AGAACTGCATTAGCGCAGCA+CGG + chr3_2:72346450-72346469 Msa0422840:CDS 50.0%
GCTTAACAAGGAGGAGAGGT+TGG + chr3_2:72346683-72346702 Msa0422840:CDS 50.0%
AGGTTGGCAATGGTTAGAGC+AGG + chr3_2:72346699-72346718 Msa0422840:CDS 50.0%
GGTTGGCAATGGTTAGAGCA+GGG + chr3_2:72346700-72346719 Msa0422840:CDS 50.0%
AGGATAAAACAGCAGCGGTC+TGG + chr3_2:72347276-72347295 Msa0422840:CDS 50.0%
CGGTCTGGTAAACAACAACG+TGG + chr3_2:72347291-72347310 Msa0422840:CDS 50.0%
CTGGTAAACAACAACGTGGG+AGG + chr3_2:72347295-72347314 Msa0422840:CDS 50.0%
! TGGGAGGAAAGCGTGGAAAT+AGG + chr3_2:72347311-72347330 Msa0422840:CDS 50.0%
! GGGAGGAAAGCGTGGAAATA+GGG + chr3_2:72347312-72347331 Msa0422840:CDS 50.0%
!! GTGGTGGTGGCTACGTTTCA+TGG - chr3_2:72341029-72341048 None:intergenic 55.0%
GTCGTTGGAGATGCCGGAAA+TGG - chr3_2:72341239-72341258 None:intergenic 55.0%
CGAGATCTTTGGCGACAGTG+GGG - chr3_2:72341261-72341280 None:intergenic 55.0%
GCGAGATCTTTGGCGACAGT+GGG - chr3_2:72341262-72341281 None:intergenic 55.0%
GGTGAGGTGAGAGAGGAACA+TGG - chr3_2:72341293-72341312 None:intergenic 55.0%
GCTGCTCGAACACTTCCTTC+TGG + chr3_2:72341373-72341392 Msa0422840:CDS 55.0%
AGGATGAAGACCGGGCAAAG+AGG + chr3_2:72341932-72341951 Msa0422840:CDS 55.0%
GGATGAAGACCGGGCAAAGA+GGG + chr3_2:72341933-72341952 Msa0422840:CDS 55.0%
AGTTCAGAAGAGGGTGGGGT+TGG + chr3_2:72342464-72342483 Msa0422840:intron 55.0%
GTTCAGAAGAGGGTGGGGTT+GGG + chr3_2:72342465-72342484 Msa0422840:intron 55.0%
! GCTGAGGGCATGTTAGTTGG+AGG + chr3_2:72343057-72343076 Msa0422840:intron 55.0%
GTGAGTTTGGAGGGAAAGGC+AGG + chr3_2:72343307-72343326 Msa0422840:intron 55.0%
GAGTTTGGAGGGAAAGGCAG+GGG + chr3_2:72343309-72343328 Msa0422840:intron 55.0%
GGAAAGGCAGGGGATAGCTT+TGG + chr3_2:72343319-72343338 Msa0422840:intron 55.0%
GAACAGAAGGGGAGGGCTTT+GGG - chr3_2:72343619-72343638 None:intergenic 55.0%
GGAGTTCGAACAGAAGGGGA+GGG - chr3_2:72343626-72343645 None:intergenic 55.0%
AAGGGCTCAACTGCATCAGG+AGG - chr3_2:72344975-72344994 None:intergenic 55.0%
GATATGCCTGCGTATGCCAC+TGG + chr3_2:72345181-72345200 Msa0422840:CDS 55.0%
CTTGCGCATCCAACAAGGGT+TGG + chr3_2:72345273-72345292 Msa0422840:intron 55.0%
TGACCCCAAGGCAAGACCAA+AGG + chr3_2:72345767-72345786 Msa0422840:CDS 55.0%
AATGTTGCGGCTGACGTTCC+TGG + chr3_2:72345804-72345823 Msa0422840:CDS 55.0%
GAGGCTGATGAAGAGGATGG+TGG + chr3_2:72346089-72346108 Msa0422840:CDS 55.0%
!! CGGGCTTTGAAGAAGTTGGC+AGG + chr3_2:72346248-72346267 Msa0422840:CDS 55.0%
GAACTGCATTAGCGCAGCAC+GGG + chr3_2:72346451-72346470 Msa0422840:CDS 55.0%
CAAGGAGGAGAGGTTGGCAA+TGG + chr3_2:72346689-72346708 Msa0422840:CDS 55.0%
TGGCAATGGTTAGAGCAGGG+AGG + chr3_2:72346703-72346722 Msa0422840:CDS 55.0%
GGCAATGGTTAGAGCAGGGA+GGG + chr3_2:72346704-72346723 Msa0422840:CDS 55.0%
AATGGTTAGAGCAGGGAGGG+AGG + chr3_2:72346707-72346726 Msa0422840:CDS 55.0%
AGGACAGTACCATGCTCGAG+CGG + chr3_2:72346734-72346753 Msa0422840:CDS 55.0%
AACAACGTGGGAGGAAAGCG+TGG + chr3_2:72347304-72347323 Msa0422840:CDS 55.0%
!! ACGGAGGCATTTCTCCCCTC+CGG + chr3_2:72341064-72341083 Msa0422840:CDS 60.0%
AGTGGGGTCGTTGGAGATGC+CGG - chr3_2:72341245-72341264 None:intergenic 60.0%
TTTGGCGACAGTGGGGTCGT+TGG - chr3_2:72341254-72341273 None:intergenic 60.0%
GGCGAGATCTTTGGCGACAG+TGG - chr3_2:72341263-72341282 None:intergenic 60.0%
TCACAAGCGCCCTCTTTGCC+CGG - chr3_2:72341945-72341964 None:intergenic 60.0%
! GGGGCTGAGGGCATGTTAGT+TGG + chr3_2:72343054-72343073 Msa0422840:intron 60.0%
CGAACAGAAGGGGAGGGCTT+TGG - chr3_2:72343620-72343639 None:intergenic 60.0%
GGGAGTTCGAACAGAAGGGG+AGG - chr3_2:72343627-72343646 None:intergenic 60.0%
TGGAGGGAGGGAGTAGAGCA+GGG - chr3_2:72343897-72343916 None:intergenic 60.0%
TTGGAGGGAGGGAGTAGAGC+AGG - chr3_2:72343898-72343917 None:intergenic 60.0%
ACATGACCGCTCACGTCCAG+AGG + chr3_2:72345022-72345041 Msa0422840:CDS 60.0%
GGTCTTGCCTTGGGGTCAGT+AGG - chr3_2:72345765-72345784 None:intergenic 60.0%
AGAGCAGGGAGGGAGGAAAG+AGG + chr3_2:72346714-72346733 Msa0422840:CDS 60.0%
GTTTGACAGCCGCTCGAGCA+TGG - chr3_2:72346746-72346765 None:intergenic 60.0%
GAAATGCCTCCGTCGCGGCA+TGG - chr3_2:72341057-72341076 None:intergenic 65.0%
GGGGAGAAATGCCTCCGTCG+CGG - chr3_2:72341062-72341081 None:intergenic 65.0%
!! AGGGGAGGGCTTTGGGAGGT+GGG - chr3_2:72343612-72343631 None:intergenic 65.0%
!! AAGGGGAGGGCTTTGGGAGG+TGG - chr3_2:72343613-72343632 None:intergenic 65.0%
!! CAGAAGGGGAGGGCTTTGGG+AGG - chr3_2:72343616-72343635 None:intergenic 65.0%
TGGGGTCAGTAGGCCTCCCT+CGG - chr3_2:72345755-72345774 None:intergenic 65.0%
AGGGAGGCCTACTGACCCCA+AGG + chr3_2:72345755-72345774 Msa0422840:CDS 65.0%
!! CGGCATGGCTCTGGTGGTGG+TGG - chr3_2:72341042-72341061 None:intergenic 70.0%
!! TCGCGGCATGGCTCTGGTGG+TGG - chr3_2:72341045-72341064 None:intergenic 70.0%
CCACCAGAGCCATGCCGCGA+CGG + chr3_2:72341045-72341064 Msa0422840:CDS 70.0%
!! CCGTCGCGGCATGGCTCTGG+TGG - chr3_2:72341048-72341067 None:intergenic 75.0%
CCTCCGTCGCGGCATGGCTC+TGG - chr3_2:72341051-72341070 None:intergenic 75.0%
CCAGAGCCATGCCGCGACGG+AGG + chr3_2:72341048-72341067 Msa0422840:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 72340972 72347571 72340972 ID=Msa0422840;Name=Msa0422840
chr3_2 mRNA 72340972 72347571 72340972 ID=Msa0422840-mRNA-1;Parent=Msa0422840;Name=Msa0422840-mRNA-1;_AED=0.12;_eAED=0.12;_QI=56|1|1|1|1|1|15|239|816
chr3_2 exon 72340972 72341444 72340972 ID=Msa0422840-mRNA-1:exon:17817;Parent=Msa0422840-mRNA-1
chr3_2 exon 72341545 72341721 72341545 ID=Msa0422840-mRNA-1:exon:17818;Parent=Msa0422840-mRNA-1
chr3_2 exon 72341928 72342052 72341928 ID=Msa0422840-mRNA-1:exon:17819;Parent=Msa0422840-mRNA-1
chr3_2 exon 72342160 72342295 72342160 ID=Msa0422840-mRNA-1:exon:17820;Parent=Msa0422840-mRNA-1
chr3_2 exon 72344146 72344295 72344146 ID=Msa0422840-mRNA-1:exon:17821;Parent=Msa0422840-mRNA-1
chr3_2 exon 72344389 72344442 72344389 ID=Msa0422840-mRNA-1:exon:17822;Parent=Msa0422840-mRNA-1
chr3_2 exon 72344579 72344674 72344579 ID=Msa0422840-mRNA-1:exon:17823;Parent=Msa0422840-mRNA-1
chr3_2 exon 72344759 72344818 72344759 ID=Msa0422840-mRNA-1:exon:17824;Parent=Msa0422840-mRNA-1
chr3_2 exon 72344969 72345043 72344969 ID=Msa0422840-mRNA-1:exon:17825;Parent=Msa0422840-mRNA-1
chr3_2 exon 72345149 72345202 72345149 ID=Msa0422840-mRNA-1:exon:17826;Parent=Msa0422840-mRNA-1
chr3_2 exon 72345525 72345626 72345525 ID=Msa0422840-mRNA-1:exon:17827;Parent=Msa0422840-mRNA-1
chr3_2 exon 72345723 72346352 72345723 ID=Msa0422840-mRNA-1:exon:17828;Parent=Msa0422840-mRNA-1
chr3_2 exon 72346435 72346551 72346435 ID=Msa0422840-mRNA-1:exon:17829;Parent=Msa0422840-mRNA-1
chr3_2 exon 72346666 72346773 72346666 ID=Msa0422840-mRNA-1:exon:17830;Parent=Msa0422840-mRNA-1
chr3_2 exon 72347183 72347571 72347183 ID=Msa0422840-mRNA-1:exon:17831;Parent=Msa0422840-mRNA-1
chr3_2 five_prime_UTR 72340972 72341027 72340972 ID=Msa0422840-mRNA-1:five_prime_utr;Parent=Msa0422840-mRNA-1
chr3_2 CDS 72341028 72341444 72341028 ID=Msa0422840-mRNA-1:cds;Parent=Msa0422840-mRNA-1
chr3_2 CDS 72341545 72341721 72341545 ID=Msa0422840-mRNA-1:cds;Parent=Msa0422840-mRNA-1
chr3_2 CDS 72341928 72342052 72341928 ID=Msa0422840-mRNA-1:cds;Parent=Msa0422840-mRNA-1
chr3_2 CDS 72342160 72342295 72342160 ID=Msa0422840-mRNA-1:cds;Parent=Msa0422840-mRNA-1
chr3_2 CDS 72344146 72344295 72344146 ID=Msa0422840-mRNA-1:cds;Parent=Msa0422840-mRNA-1
chr3_2 CDS 72344389 72344442 72344389 ID=Msa0422840-mRNA-1:cds;Parent=Msa0422840-mRNA-1
chr3_2 CDS 72344579 72344674 72344579 ID=Msa0422840-mRNA-1:cds;Parent=Msa0422840-mRNA-1
chr3_2 CDS 72344759 72344818 72344759 ID=Msa0422840-mRNA-1:cds;Parent=Msa0422840-mRNA-1
chr3_2 CDS 72344969 72345043 72344969 ID=Msa0422840-mRNA-1:cds;Parent=Msa0422840-mRNA-1
chr3_2 CDS 72345149 72345202 72345149 ID=Msa0422840-mRNA-1:cds;Parent=Msa0422840-mRNA-1
chr3_2 CDS 72345525 72345626 72345525 ID=Msa0422840-mRNA-1:cds;Parent=Msa0422840-mRNA-1
chr3_2 CDS 72345723 72346352 72345723 ID=Msa0422840-mRNA-1:cds;Parent=Msa0422840-mRNA-1
chr3_2 CDS 72346435 72346551 72346435 ID=Msa0422840-mRNA-1:cds;Parent=Msa0422840-mRNA-1
chr3_2 CDS 72346666 72346773 72346666 ID=Msa0422840-mRNA-1:cds;Parent=Msa0422840-mRNA-1
chr3_2 CDS 72347183 72347332 72347183 ID=Msa0422840-mRNA-1:cds;Parent=Msa0422840-mRNA-1
chr3_2 three_prime_UTR 72347333 72347571 72347333 ID=Msa0422840-mRNA-1:three_prime_utr;Parent=Msa0422840-mRNA-1
Gene Sequence

>Msa0422840

ATGAAACGTAGCCACCACCACCAGAGCCATGCCGCGACGGAGGCATTTCTCCCCTCCGGTCTAAAATCCGAAAAGCTCAGCCTCCCATCACTACAATCAAAGATGAAATGCGACCCTGAAGGCTACGAATCCGAACTCCTCTTAATCCGCAGTCAATTCAATTCCTCCCTTGAACTCTTCCAACAACAATCCGCCATGAACTTCACTTCCATTTCCGGCATCTCCAACGACCCCACTGTCGCCAAAGATCTCGCCGATAAAGCCATGTTCCTCTCTCACCTCACCTCCTTTTACCCTCAACACCTCTCTGAATTCCCTAACAAACTCGCTGAGTTGCTTCGTTGTGCTGCTCGAACACTTCCTTCTGGACTTCGTAACGATTTAGCAAATTCTCTTATACTACTTGTTAATCGTGAGATTGTTAGCATTAAAGATACACTTTCGTTGTTTATGGAGCTTCAAACATTAGGTGATAAAAAGCTGAGGGAGTTGACGTTTGCACACGTTGTTAAAAGCATAAAACGTATGAACCAAAAGCATAAGGATGAAGCCAAAAACCGTGCACTTCAGAACATTCTTTTTGTCATGTTGCAGCAAGAGGATGAAGACCGGGCAAAGAGGGCGCTTGTGACACTATGTGAGCTTCACAAGAGACGGACATGGTTTGATGAGAGAACAGCAAATGCAATTTGCACTGCTTCCTTCCATCCATCGTCAAGAATCATGATATCAACATTATGCTTTCTGCTTGATTATGAGAAGATTGAAAACTACCAAGATAGTGATGATGAAAGCAGTGACGAGGAAACAACCGAATCACCTCAAGTTATTCTTAGAAGGGAGACGGTTTATAAGGCAAGCCACCAAGGTACATCAGCTAGCAAAAAGAAAAAGAAAAGGCAATTAGACCGCATAATACGTAACATGAAAAAGAAAGAGCGCGGATCATCTGAAAGGAAGAATAACATCTATTACTCACCACTCAACCATCTTAAAGATCCACAGGGTTTTGTGGAGAAGCTGTTTTCACGTCTGCAGAAATGCAATGAGCGATTTGAGGTCAAGATGATGATGTTGAAAGTGATAGCTCGAACAATTGGGCTTCACCAGTTAATGTTGTTAAACTTTTACCCTTATCTTCAGAAATATATCCAGCCCCATCAACGAGATGTTACAAATTTGATTGCAGCAGCGGTTCAGGCTTGCCATGATATGGTTCCTCCTGATGCAGTTGAGCCCTTGTTTAAACAAATTGTAAATCAATTTGTACATGACCGCTCACGTCCAGAGGCTATCACTGTTGGAATAAATGCAGTCAGGGAGATATGCCTGCGTATGCCACTGTTAATGAATGAAGACCTACTTCAAGACCTTGCCCTATATAAGAAGTCACATGAGAAAGGAGTTTCAATAGCAGCTCGATCTCTCATTACATTATTCCGAGAGGTTTGCCCTTCACTGCTAATTAAGAAGGACCGAGGGAGGCCTACTGACCCCAAGGCAAGACCAAAGGCTTATGGAGAAGTCAATGTTGCGGCTGACGTTCCTGGTGCTGAGTTGTTGCAGATTATTGATGATGATGTTGAGCAGGAGAGTTCTCATTCTGATGATTGCGGTTCAGAAAATGAGCAGGAAGATGATCAGGTAAGTTTGAACTCTGACGATGACAACCAGCTAGGCAGTGATAATACCGGAAGTGATGATGATGAAGCCGAAGATCATGATGGTGAATCAGACGATGAAAACGATAGAAGTTCTGATTACGAAACCAGTGGTGATGATGCTGATAATGTTGATCTAGAAGACAGTGAAGAGGCTGATGAAGAGGATGGTGGGATTTCGGAACATGAAGGAGATGGTGATCTGCATATTCTTGGAAGTGTGGATACAAAAACTACGTTAAAAGACTCAGCAAAAAAGAGGAAGTTTAGCGATTTCAACGATCAACTTACAGCTGCTGATTCAAGTCTCCGGGCTTTGAAGAAGTTGGCAGGGACAACAATGGAGAATGCCCTGCCAGAAAATGAAGATGGAATTCTTTCCAATGCAGACTTCCAGAGGATCAAGGAACTAAAGGCCAAAAACGAAGCAAGAACTGCATTAGCGCAGCACGGGCTTTTAAAGTCATCAACAAATAAGATTCCAAGCTCTGATCAACTAGGTTTAAAGCGAGTGGATGGTTCCATGCTTGAAGCTCATGTAAAGAAAAAGCTTAACAAGGAGGAGAGGTTGGCAATGGTTAGAGCAGGGAGGGAGGAAAGAGGACAGTACCATGCTCGAGCGGCTGTCAAACAGAAAAAGACGGGTGGTCTAAGTAACAAGCAAAAGGAACACAAGAAACAAATGCCGTTAGTTGCAAAGAGAAAGAAGGTGGCAAGAACTAAGATAGAGAAAAGGATAAAACAGCAGCGGTCTGGTAAACAACAACGTGGGAGGAAAGCGTGGAAATAG
Protein sequence

>Msa0422840

MKRSHHHQSHAATEAFLPSGLKSEKLSLPSLQSKMKCDPEGYESELLLIRSQFNSSLELFQQQSAMNFTSISGISNDPTVAKDLADKAMFLSHLTSFYPQHLSEFPNKLAELLRCAARTLPSGLRNDLANSLILLVNREIVSIKDTLSLFMELQTLGDKKLRELTFAHVVKSIKRMNQKHKDEAKNRALQNILFVMLQQEDEDRAKRALVTLCELHKRRTWFDERTANAICTASFHPSSRIMISTLCFLLDYEKIENYQDSDDESSDEETTESPQVILRRETVYKASHQGTSASKKKKKRQLDRIIRNMKKKERGSSERKNNIYYSPLNHLKDPQGFVEKLFSRLQKCNERFEVKMMMLKVIARTIGLHQLMLLNFYPYLQKYIQPHQRDVTNLIAAAVQACHDMVPPDAVEPLFKQIVNQFVHDRSRPEAITVGINAVREICLRMPLLMNEDLLQDLALYKKSHEKGVSIAARSLITLFREVCPSLLIKKDRGRPTDPKARPKAYGEVNVAADVPGAELLQIIDDDVEQESSHSDDCGSENEQEDDQVSLNSDDDNQLGSDNTGSDDDEAEDHDGESDDENDRSSDYETSGDDADNVDLEDSEEADEEDGGISEHEGDGDLHILGSVDTKTTLKDSAKKRKFSDFNDQLTAADSSLRALKKLAGTTMENALPENEDGILSNADFQRIKELKAKNEARTALAQHGLLKSSTNKIPSSDQLGLKRVDGSMLEAHVKKKLNKEERLAMVRAGREERGQYHARAAVKQKKTGGLSNKQKEHKKQMPLVAKRKKVARTKIEKRIKQQRSGKQQRGRKAWK*