AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0753180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0753180 MtrunA17_Chr5g0397551 95.639 321 14 0 1 321 1 321 0.0 630
Msa0753180 MtrunA17_Chr8g0386741 64.306 353 92 8 1 321 1 351 3.75e-130 375
Msa0753180 MtrunA17_Chr8g0349091 48.649 259 124 5 69 321 88 343 5.57e-68 216
Msa0753180 MtrunA17_Chr7g0247431 43.503 354 159 13 1 321 1 346 1.46e-62 202
Msa0753180 MtrunA17_Chr4g0054661 50.521 192 76 6 70 249 73 257 1.39e-48 166
Msa0753180 MtrunA17_Chr7g0245841 45.575 226 114 4 68 289 58 278 1.25e-46 160
Msa0753180 MtrunA17_Chr1g0179461 44.286 210 103 3 66 261 65 274 3.75e-46 160
Msa0753180 MtrunA17_Chr8g0351761 41.923 260 132 5 68 312 69 324 3.38e-44 154
Msa0753180 MtrunA17_Chr4g0056761 49.519 208 92 6 70 264 72 279 1.60e-40 144
Msa0753180 MtrunA17_Chr1g0188211 45.370 216 94 7 59 251 37 251 3.16e-39 141
Msa0753180 MtrunA17_Chr5g0398621 40.670 209 106 3 46 249 22 217 3.70e-38 135
Msa0753180 MtrunA17_Chr6g0476061 37.234 282 138 9 1 264 1 261 9.48e-32 120
Msa0753180 MtrunA17_Chr7g0274821 37.647 255 131 8 69 317 73 305 3.41e-29 115
Msa0753180 MtrunA17_Chr4g0027371 46.923 130 65 3 123 248 8 137 6.14e-28 108
Msa0753180 MtrunA17_Chr4g0027331 46.565 131 66 3 123 249 8 138 2.09e-27 104
Msa0753180 MtrunA17_Chr1g0190011 38.596 228 107 11 70 285 43 249 3.01e-27 108
Msa0753180 MtrunA17_Chr4g0027351 47.154 123 61 3 123 243 8 128 1.53e-25 99.4
Msa0753180 MtrunA17_Chr1g0165101 37.037 216 107 6 59 252 74 282 3.46e-25 103
Msa0753180 MtrunA17_Chr3g0133051 35.542 166 102 3 85 248 55 217 6.99e-24 99.0
Msa0753180 MtrunA17_Chr5g0443311 37.427 171 98 4 81 251 32 193 4.63e-21 90.5
Msa0753180 MtrunA17_Chr5g0398531 38.323 167 89 4 104 269 100 253 1.13e-20 90.9
Msa0753180 MtrunA17_Chr5g0427311 40.476 126 70 4 126 248 72 195 3.30e-20 87.8
Msa0753180 MtrunA17_Chr8g0351651 40.411 146 80 3 104 248 86 225 6.77e-20 88.2
Msa0753180 MtrunA17_Chr5g0417581 38.333 120 71 3 125 242 10 128 2.39e-19 84.3
Msa0753180 MtrunA17_Chr1g0168121 38.776 147 83 4 103 248 41 181 4.18e-19 85.5
Msa0753180 MtrunA17_Chr6g0476241 33.981 206 111 7 70 270 120 305 2.69e-17 80.9
Msa0753180 MtrunA17_Chr4g0027301 39.516 124 71 3 124 243 16 139 4.56e-17 76.6
Msa0753180 MtrunA17_Chr1g0190051 35.593 177 101 5 96 271 66 230 1.29e-16 79.0
Msa0753180 MtrunA17_Chr3g0112131 40.678 118 66 3 132 248 104 218 2.59e-14 72.4
Msa0753180 MtrunA17_Chr7g0250031 46.970 66 35 0 137 202 87 152 4.10e-14 71.2
Msa0753180 MtrunA17_Chr4g0054651 38.261 115 63 2 137 248 106 215 5.10e-14 71.2
Msa0753180 MtrunA17_Chr3g0094471 29.412 170 90 4 104 248 55 219 9.32e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0753180 AT1G63470.1 48.958 384 127 13 1 321 1 378 2.55e-94 285
Msa0753180 AT1G63480.2 47.059 340 125 11 1 294 1 331 5.59e-81 250
Msa0753180 AT1G63480.1 47.059 340 125 11 1 294 1 331 5.59e-81 250
Msa0753180 AT1G63480.5 46.407 334 124 11 7 294 1 325 1.74e-77 241
Msa0753180 AT1G63480.7 46.407 334 124 11 7 294 1 325 1.74e-77 241
Msa0753180 AT1G63480.4 46.407 334 124 11 7 294 1 325 1.74e-77 241
Msa0753180 AT1G63480.3 46.407 334 124 11 7 294 1 325 1.74e-77 241
Msa0753180 AT1G63480.6 46.407 334 124 11 7 294 1 325 1.74e-77 241
Msa0753180 AT2G45850.1 43.575 358 155 11 1 321 1 348 2.58e-73 230
Msa0753180 AT2G45850.2 43.575 358 155 11 1 321 1 348 2.58e-73 230
Msa0753180 AT3G61310.1 41.944 360 164 9 1 321 1 354 5.74e-68 216
Msa0753180 AT2G45850.3 46.763 278 117 5 1 248 1 277 3.29e-62 199
Msa0753180 AT4G12080.1 48.837 215 88 4 69 261 88 302 2.00e-56 187
Msa0753180 AT2G33620.1 52.261 199 82 5 64 254 91 284 7.50e-54 180
Msa0753180 AT2G33620.4 52.261 199 82 5 64 254 91 284 7.50e-54 180
Msa0753180 AT2G33620.2 52.261 199 82 5 64 254 91 284 7.50e-54 180
Msa0753180 AT2G33620.3 52.261 199 82 5 64 254 91 284 7.50e-54 180
Msa0753180 AT4G17950.1 43.154 241 94 7 69 275 130 361 2.64e-46 162
Msa0753180 AT4G25320.1 35.842 279 131 5 69 308 85 354 7.26e-45 158
Msa0753180 AT4G22770.2 45.175 228 99 7 69 281 71 287 1.05e-43 153
Msa0753180 AT4G22770.1 45.175 228 99 7 69 281 71 287 1.05e-43 153
Msa0753180 AT5G46640.1 45.089 224 98 5 66 269 98 316 1.45e-43 154
Msa0753180 AT4G00200.2 47.573 206 82 4 59 249 45 239 1.38e-39 142
Msa0753180 AT4G00200.1 47.573 206 82 4 59 249 45 239 1.38e-39 142
Msa0753180 AT5G62260.1 40.000 215 104 4 58 249 64 276 2.36e-38 140
Msa0753180 AT5G62260.3 40.000 215 104 4 58 249 64 276 2.36e-38 140
Msa0753180 AT5G51590.1 39.091 220 97 4 69 251 77 296 1.40e-37 139
Msa0753180 AT5G62260.2 38.605 215 107 4 58 249 64 276 1.90e-36 132
Msa0753180 AT3G04590.1 37.615 218 113 6 41 248 79 283 6.55e-35 129
Msa0753180 AT3G04590.2 37.615 218 113 6 41 248 79 283 1.35e-34 130
Msa0753180 AT3G60870.1 34.906 212 101 8 46 248 13 196 7.20e-23 96.3
Msa0753180 AT1G76500.1 38.065 155 80 4 104 248 72 220 2.28e-20 90.1
Msa0753180 AT5G49700.1 33.140 172 92 6 92 248 39 202 3.33e-19 86.3
Msa0753180 AT4G14465.1 42.000 100 55 1 103 202 66 162 4.52e-18 83.2
Msa0753180 AT2G45430.1 34.066 182 102 5 104 280 89 257 1.05e-17 82.8
Msa0753180 AT2G36560.1 37.190 121 73 3 131 248 102 222 5.97e-17 82.0
Msa0753180 AT4G12050.1 40.136 147 80 4 104 248 118 258 7.36e-17 80.5
Msa0753180 AT3G04570.1 35.294 153 86 3 104 248 80 227 1.37e-16 79.3
Msa0753180 AT1G14490.2 34.132 167 96 5 87 248 11 168 1.70e-16 77.8
Msa0753180 AT4G22810.1 38.926 149 81 4 104 248 105 247 2.26e-16 79.0
Msa0753180 AT2G35270.1 34.459 148 86 3 104 248 78 217 2.57e-16 78.2
Msa0753180 AT1G14490.1 34.899 149 87 4 105 248 6 149 3.32e-16 76.3
Msa0753180 AT2G42940.1 38.655 119 68 2 86 202 33 148 2.56e-15 75.1
Msa0753180 AT5G28590.1 35.484 155 69 5 128 281 24 148 9.16e-14 69.7
Msa0753180 AT1G20900.1 36.129 155 83 4 104 248 86 234 1.14e-13 70.9
Msa0753180 AT3G55560.1 40.351 114 65 3 137 249 118 229 2.47e-12 67.0
Msa0753180 AT4G17800.1 40.909 66 39 0 137 202 112 177 6.89e-12 65.5
Msa0753180 AT4G35390.1 35.811 148 86 4 104 248 63 204 5.08e-11 63.2

Find 111 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACTAGTCAGCTTATTAA+TGG 0.189729 5_2:+6896751 Msa0753180:three_prime_UTR
ATGCTTATCTGGTTCTTTCT+TGG 0.208399 5_2:+6895634 Msa0753180:CDS
TGAAGAGAGAAAACTCAAAA+TGG 0.252221 5_2:-6893083 None:intergenic
AACCAGATAAGCATAATATT+TGG 0.258954 5_2:-6895625 None:intergenic
GGTGCCGTAGTTCCTTATTC+AGG 0.267238 5_2:+6893515 Msa0753180:CDS
TTCCAAATATTATGCTTATC+TGG 0.278941 5_2:+6895623 Msa0753180:CDS
AATCAAAACTATACAGCTTC+TGG 0.279195 5_2:+6896378 Msa0753180:CDS
TGATTAGGTGGCTCACTTCC+TGG 0.283204 5_2:-6896360 None:intergenic
TATTTGATTATCAATGCTTT+AGG 0.287863 5_2:+6896704 Msa0753180:three_prime_UTR
TGTTGCTTCCTTCCACTTCC+CGG 0.301637 5_2:-6893674 None:intergenic
CTCGGCCGTTTCTCCGAATC+AGG 0.320939 5_2:-6893641 None:intergenic
AATCATAGCTTGAACGCATT+TGG 0.335589 5_2:-6893041 None:intergenic
AACCCTAGATTTCAAAATCT+AGG 0.341061 5_2:+6893008 Msa0753180:five_prime_UTR
TCTTTCTTGGTTGCTGAAGA+TGG 0.344581 5_2:+6895647 Msa0753180:CDS
TTATGCATCTTGTCAGGAAC+TGG 0.345983 5_2:+6895204 Msa0753180:CDS
ACAGACAGCTCCCCTGAATA+AGG 0.360120 5_2:-6893527 None:intergenic
TCAGCTTATTAATGGAAGTT+TGG 0.364139 5_2:+6896759 Msa0753180:three_prime_UTR
GATGGGAAAAGAAAAGAGTT+TGG 0.366174 5_2:-6892951 None:intergenic
GAACGGGTGAAAGTTTATTC+AGG 0.376058 5_2:+6896476 Msa0753180:exon
ATGGGATAAGAGGGTAGTTC+AGG 0.377740 5_2:-6893064 None:intergenic
AATTACCTCTTGAGCTTCAA+TGG 0.384245 5_2:-6894451 None:intergenic
AACTATACAGCTTCTGGAAC+AGG 0.388590 5_2:+6896384 Msa0753180:CDS
TTTATCCCTTCTAAGGTGAA+TGG 0.390199 5_2:+6894385 Msa0753180:intron
AAAACTCAAAATGGGATAAG+AGG 0.394158 5_2:-6893074 None:intergenic
TGCTAATTCCACTCCTGATT+CGG 0.413237 5_2:+6893628 Msa0753180:CDS
ATTCAATATCTAGAGCTACT+AGG 0.420750 5_2:+6893136 Msa0753180:five_prime_UTR
AATGCAGAGAAAACAGAAAA+GGG 0.430304 5_2:-6893168 None:intergenic
AGTACGGATGGTCATGTTAT+CGG 0.434375 5_2:+6895713 Msa0753180:CDS
AAATGCAGAGAAAACAGAAA+AGG 0.437943 5_2:-6893169 None:intergenic
AGAGGAAGACCTAGGAAGTA+TGG 0.440247 5_2:+6893560 Msa0753180:CDS
CTTATTAATGGAAGTTTGGT+AGG 0.440811 5_2:+6896763 Msa0753180:three_prime_UTR
GGAGAAAGTCTCAAAGAAAC+AGG 0.441189 5_2:-6893593 None:intergenic
TAGTGTTTCCCTTTCTAGTA+CGG 0.442988 5_2:+6895697 Msa0753180:CDS
AGAGGACGGCCACCGGGAAG+TGG 0.446219 5_2:+6893662 Msa0753180:CDS
GATGAACAGTTCAGCTGGAC+AGG 0.447850 5_2:+6894407 Msa0753180:CDS
CTCAAAGAAACAGGTACATC+AGG 0.448430 5_2:-6893584 None:intergenic
GTGCCGTAGTTCCTTATTCA+GGG 0.450813 5_2:+6893516 Msa0753180:CDS
ACGGCCGAGAGGACGGCCAC+CGG 0.451090 5_2:+6893655 Msa0753180:CDS
ACCCTAGATTTCAAAATCTA+GGG 0.451823 5_2:+6893009 Msa0753180:five_prime_UTR
CGCGCTTTATGCATCTTGTC+AGG 0.452328 5_2:+6895198 Msa0753180:CDS
GTGTTTCAACAACCACCTCC+TGG 0.454565 5_2:+6893410 Msa0753180:CDS
CGGCCGAGAGGACGGCCACC+GGG 0.469316 5_2:+6893656 Msa0753180:CDS
AATTAAGAATATACCTGGAC+AGG 0.469513 5_2:-6895767 None:intergenic
AATCCTCATGGTGGTTCTGA+TGG 0.470012 5_2:+6893449 Msa0753180:CDS
AAAAGAAAAGAGTTTGGTTG+TGG 0.471775 5_2:-6892945 None:intergenic
GAAGAGAGAAAACTCAAAAT+GGG 0.473523 5_2:-6893082 None:intergenic
AGTGCAGAGTGTAATAATGA+TGG 0.475460 5_2:-6892969 None:intergenic
CATGACCATCCGTACTAGAA+AGG 0.475896 5_2:-6895706 None:intergenic
TATTGCTGCAAGCCCTGTCC+AGG 0.478697 5_2:+6895754 Msa0753180:CDS
TTCAATATCTAGAGCTACTA+GGG 0.479360 5_2:+6893137 Msa0753180:five_prime_UTR
CTGGTATTGATTTGATGAAC+GGG 0.480347 5_2:+6896460 Msa0753180:CDS
ATGACCATCCGTACTAGAAA+GGG 0.483763 5_2:-6895705 None:intergenic
TTATCGGTGGTGGTGTTGCT+AGG 0.492524 5_2:+6895729 Msa0753180:CDS
CAGTGTCAGTGTTACATATG+AGG 0.494038 5_2:+6895266 Msa0753180:CDS
CATTGATAATCAAATAGAAC+CGG 0.494380 5_2:-6896697 None:intergenic
AGAGCTTTGTCTAATCCTCA+TGG 0.497003 5_2:+6893437 Msa0753180:CDS
GGTGGACCTCACAATAGAAC+TGG 0.506766 5_2:+6895668 Msa0753180:CDS
GAATGGATGAACAGTTCAGC+TGG 0.511176 5_2:+6894402 Msa0753180:CDS
CTTCCCGGTGGCCGTCCTCT+CGG 0.520916 5_2:-6893659 None:intergenic
TGAAACTCTAGGTAAAATAG+AGG 0.527313 5_2:+6896674 Msa0753180:three_prime_UTR
CCACTCCTGATTCGGAGAAA+CGG 0.532902 5_2:+6893636 Msa0753180:CDS
AGTGACAAATTAGCTTCTCC+AGG 0.534618 5_2:+6896342 Msa0753180:CDS
GTTTCCCTTTCTAGTACGGA+TGG 0.539742 5_2:+6895701 Msa0753180:CDS
GTGCAAAGAAATGAAACTCT+AGG 0.541757 5_2:+6896663 Msa0753180:three_prime_UTR
ACATCAGGACCATACTTCCT+AGG 0.542327 5_2:-6893569 None:intergenic
TGATTCGTTTGTTACAGCAT+AGG 0.543040 5_2:-6896612 None:intergenic
AAGCAACAGCTAGCTGCTCT+AGG 0.543103 5_2:+6893689 Msa0753180:CDS
CGGAGAAACGGCCGAGAGGA+CGG 0.543303 5_2:+6893648 Msa0753180:CDS
GCACAATGTGGCATGGATCA+AGG 0.545853 5_2:+6896406 Msa0753180:CDS
TTCTTGGTTGCTGAAGATGG+TGG 0.546001 5_2:+6895650 Msa0753180:CDS
GACGGCCACCGGGAAGTGGA+AGG 0.550895 5_2:+6893666 Msa0753180:CDS
TATGCATCTTGTCAGGAACT+GGG 0.554881 5_2:+6895205 Msa0753180:CDS
GTAGTTTGCAGCTTTGTGTA+CGG 0.556100 5_2:+6896249 Msa0753180:CDS
TGTTTCAACAACCACCTCCT+GGG 0.564423 5_2:+6893411 Msa0753180:CDS
GTTTGGTAGGAAATAGAGAA+TGG 0.564956 5_2:+6896776 Msa0753180:three_prime_UTR
CTCATATGTAACACTGACAC+TGG 0.565778 5_2:-6895265 None:intergenic
GAATTAGCAGTAGCAGACAT+AGG 0.567416 5_2:-6893614 None:intergenic
CTCCCCTGAATAAGGAACTA+CGG 0.572244 5_2:-6893519 None:intergenic
GTGCAGAGTGTAATAATGAT+GGG 0.575446 5_2:-6892968 None:intergenic
AAACTCAAAATGGGATAAGA+GGG 0.580219 5_2:-6893073 None:intergenic
ACTCTAGGTAAAATAGAGGC+CGG 0.582374 5_2:+6896678 Msa0753180:three_prime_UTR
TATCACCATTGAAGCTCAAG+AGG 0.586931 5_2:+6894446 Msa0753180:CDS
ACACTGACACTGGTAGAAGC+AGG 0.587023 5_2:-6895255 None:intergenic
GATGGTCATGTTATCGGTGG+TGG 0.597066 5_2:+6895719 Msa0753180:CDS
AAAAGAAAAGAGGAAGACCT+AGG 0.598976 5_2:+6893552 Msa0753180:CDS
CCGTTTCTCCGAATCAGGAG+TGG 0.602529 5_2:-6893636 None:intergenic
TGACACTGGTAGAAGCAGGC+TGG 0.603686 5_2:-6895251 None:intergenic
AAAGCTCTAAACCCAGGAGG+TGG 0.606520 5_2:-6893422 None:intergenic
GGAACAGGCACAATGTGGCA+TGG 0.608270 5_2:+6896399 Msa0753180:CDS
CGGGTGAAAGTTTATTCAGG+AGG 0.610764 5_2:+6896479 Msa0753180:exon
TGCCGTAGTTCCTTATTCAG+GGG 0.617863 5_2:+6893517 Msa0753180:CDS
TAGAGAATGGCTCTTTGATG+AGG 0.620948 5_2:+6896789 Msa0753180:three_prime_UTR
GTTTGCAGCTTTGTGTACGG+TGG 0.633716 5_2:+6896252 Msa0753180:CDS
GCTTTGTCTAATCCTCATGG+TGG 0.633942 5_2:+6893440 Msa0753180:CDS
ACTGGTATTGATTTGATGAA+CGG 0.640757 5_2:+6896459 Msa0753180:CDS
ATTAAGAATATACCTGGACA+GGG 0.640852 5_2:-6895766 None:intergenic
ATGCAGAGAAAACAGAAAAG+GGG 0.641114 5_2:-6893167 None:intergenic
GGACCTCACAATAGAACTGG+TGG 0.645571 5_2:+6895671 Msa0753180:CDS
GACAAGATGCATAAAGCGCG+TGG 0.650446 5_2:-6895195 None:intergenic
ACGGATGGTCATGTTATCGG+TGG 0.655178 5_2:+6895716 Msa0753180:CDS
ATCAAATCAATACCAGTGTG+TGG 0.655711 5_2:-6896453 None:intergenic
TGCTTCCTTCCACTTCCCGG+TGG 0.663805 5_2:-6893671 None:intergenic
AAAAGTACACAACCACACAC+TGG 0.665666 5_2:+6896441 Msa0753180:CDS
TTAGACAAAGCTCTAAACCC+AGG 0.670436 5_2:-6893428 None:intergenic
ATGCCACCAGTTCTATTGTG+AGG 0.672283 5_2:-6895674 None:intergenic
GCTAATTTGTCACTACTCTG+AGG 0.677251 5_2:-6896333 None:intergenic
GATTCGGAGAAACGGCCGAG+AGG 0.704001 5_2:+6893644 Msa0753180:CDS
CTTCTGGAACAGGCACAATG+TGG 0.706254 5_2:+6896394 Msa0753180:CDS
GACAAAGCTCTAAACCCAGG+AGG 0.733182 5_2:-6893425 None:intergenic
GCTTCAATGGTGATAACATG+AGG 0.739912 5_2:-6894438 None:intergenic
GAACCATCAGAACCACCATG+AGG 0.742787 5_2:-6893452 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAAATTATAACTATTTAA+GGG - chr5_2:6895375-6895394 None:intergenic 10.0%
!! AACTAAATTATAACTATTTA+AGG - chr5_2:6895376-6895395 None:intergenic 10.0%
!! AACTTTAGTAAAAAAAAAGT+TGG + chr5_2:6893259-6893278 Msa0753180:five_prime_UTR 15.0%
!! ACTTTAGTAAAAAAAAAGTT+GGG + chr5_2:6893260-6893279 Msa0753180:five_prime_UTR 15.0%
!! AAAAATATAATATGGAAAGT+CGG - chr5_2:6894605-6894624 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTTTGCAG+TGG + chr5_2:6895520-6895539 Msa0753180:intron 15.0%
!! TTGATTGTATGTATTGTTTA+AGG + chr5_2:6893745-6893764 Msa0753180:intron 20.0%
!! ACAACTAAATATAAACAAAG+TGG - chr5_2:6894513-6894532 None:intergenic 20.0%
!! ATTTAAGGGATTTAGTAAAA+GGG - chr5_2:6895361-6895380 None:intergenic 20.0%
!! TATTTAAGGGATTTAGTAAA+AGG - chr5_2:6895362-6895381 None:intergenic 20.0%
!! AGTTATGACTATTAAAGAAA+AGG + chr5_2:6895425-6895444 Msa0753180:intron 20.0%
!! GTTATGACTATTAAAGAAAA+GGG + chr5_2:6895426-6895445 Msa0753180:intron 20.0%
!!! TTTTATTTTTCATGTTTTGC+AGG + chr5_2:6895595-6895614 Msa0753180:intron 20.0%
!!! TTTATTTTTCATGTTTTGCA+GGG + chr5_2:6895596-6895615 Msa0753180:intron 20.0%
!!! TTAAGTTGTTTATCTAAACA+GGG - chr5_2:6895904-6895923 None:intergenic 20.0%
!!! ATTAAGTTGTTTATCTAAAC+AGG - chr5_2:6895905-6895924 None:intergenic 20.0%
!! ACTGTATTTATATAAGCTAT+AGG + chr5_2:6896008-6896027 Msa0753180:intron 20.0%
!!! TATTTAGATTGGTTTATTTG+AGG - chr5_2:6896130-6896149 None:intergenic 20.0%
!! TCAAATAAACCAATCTAAAT+AGG + chr5_2:6896129-6896148 Msa0753180:intron 20.0%
!! TATTTGATTATCAATGCTTT+AGG + chr5_2:6896704-6896723 Msa0753180:three_prime_UTR 20.0%
!!! TTTCATACTTTTTTGTCATC+TGG + chr5_2:6893220-6893239 Msa0753180:five_prime_UTR 25.0%
!!! TTCATACTTTTTTGTCATCT+GGG + chr5_2:6893221-6893240 Msa0753180:five_prime_UTR 25.0%
!! TTTTAGTGTTAGTTAATGCA+TGG + chr5_2:6893325-6893344 Msa0753180:exon 25.0%
!!! GTATGGTTTGTGTTTTTATA+TGG + chr5_2:6893711-6893730 Msa0753180:intron 25.0%
! GTATGTATTGTTTAAGGATT+TGG + chr5_2:6893751-6893770 Msa0753180:intron 25.0%
!! AAGGATTTGGAATTGTAATT+TGG + chr5_2:6893764-6893783 Msa0753180:intron 25.0%
!!! TTATCAACTTGCTAATAGAT+TGG + chr5_2:6893927-6893946 Msa0753180:intron 25.0%
!! AAGTATAAAGCATCTAGAAA+TGG - chr5_2:6894035-6894054 None:intergenic 25.0%
! GATAAAAGCAAAAGAAAAGA+AGG - chr5_2:6894078-6894097 None:intergenic 25.0%
!! ATTGTTGTGTTTTATATTGG+CGG + chr5_2:6894125-6894144 Msa0753180:intron 25.0%
! AATTGCTGAATAATAACACT+TGG - chr5_2:6894152-6894171 None:intergenic 25.0%
!! AGTGTTATTATTCAGCAATT+TGG + chr5_2:6894152-6894171 Msa0753180:intron 25.0%
! GTCAAAAATGACTAAATTGA+TGG + chr5_2:6894213-6894232 Msa0753180:intron 25.0%
!! ATGACTAAATTGATGGTAAT+TGG + chr5_2:6894220-6894239 Msa0753180:intron 25.0%
! ATAGATAACCATATCTATCA+TGG + chr5_2:6894297-6894316 Msa0753180:intron 25.0%
! TTTAAATCATAATACCCCAT+AGG + chr5_2:6894622-6894641 Msa0753180:intron 25.0%
! TTAACCAATAATGATGTTGA+GGG + chr5_2:6894877-6894896 Msa0753180:intron 25.0%
! CAAAAGAAAATATCCATTCA+AGG - chr5_2:6895130-6895149 None:intergenic 25.0%
!!! TGGATATTTTCTTTTGTTTC+AGG + chr5_2:6895134-6895153 Msa0753180:intron 25.0%
! TTCCAAATATTATGCTTATC+TGG + chr5_2:6895623-6895642 Msa0753180:CDS 25.0%
! AACCAGATAAGCATAATATT+TGG - chr5_2:6895628-6895647 None:intergenic 25.0%
! ATTGCAATTAAGAATATACC+TGG - chr5_2:6895775-6895794 None:intergenic 25.0%
! ATTCTTAATTGCAATCTCAA+TGG + chr5_2:6895780-6895799 Msa0753180:intron 25.0%
! ACATTAAGTCAAAACACTTA+CGG + chr5_2:6895862-6895881 Msa0753180:intron 25.0%
!! TGTAACAAACGAATCATTTT+AGG + chr5_2:6896619-6896638 Msa0753180:three_prime_UTR 25.0%
!! GTAACAAACGAATCATTTTA+GGG + chr5_2:6896620-6896639 Msa0753180:three_prime_UTR 25.0%
!! CATTGATAATCAAATAGAAC+CGG - chr5_2:6896700-6896719 None:intergenic 25.0%
AAAAGAAAAGAGTTTGGTTG+TGG - chr5_2:6892948-6892967 None:intergenic 30.0%
AACCCTAGATTTCAAAATCT+AGG + chr5_2:6893008-6893027 Msa0753180:five_prime_UTR 30.0%
ACCCTAGATTTCAAAATCTA+GGG + chr5_2:6893009-6893028 Msa0753180:five_prime_UTR 30.0%
!!! ACCCTAGATTTTGAAATCTA+GGG - chr5_2:6893013-6893032 None:intergenic 30.0%
!!! AACCCTAGATTTTGAAATCT+AGG - chr5_2:6893014-6893033 None:intergenic 30.0%
AAACTCAAAATGGGATAAGA+GGG - chr5_2:6893076-6893095 None:intergenic 30.0%
AAAACTCAAAATGGGATAAG+AGG - chr5_2:6893077-6893096 None:intergenic 30.0%
GAAGAGAGAAAACTCAAAAT+GGG - chr5_2:6893085-6893104 None:intergenic 30.0%
TGAAGAGAGAAAACTCAAAA+TGG - chr5_2:6893086-6893105 None:intergenic 30.0%
! ATTCAATATCTAGAGCTACT+AGG + chr5_2:6893136-6893155 Msa0753180:five_prime_UTR 30.0%
! TTCAATATCTAGAGCTACTA+GGG + chr5_2:6893137-6893156 Msa0753180:five_prime_UTR 30.0%
AATGCAGAGAAAACAGAAAA+GGG - chr5_2:6893171-6893190 None:intergenic 30.0%
AAATGCAGAGAAAACAGAAA+AGG - chr5_2:6893172-6893191 None:intergenic 30.0%
! TTTCTGTTTTCTCTGCATTT+TGG + chr5_2:6893172-6893191 Msa0753180:five_prime_UTR 30.0%
! AAAAAGTTGGGTTTTTGAAC+TGG + chr5_2:6893272-6893291 Msa0753180:five_prime_UTR 30.0%
!!! AAGCTATGTCATTTTCTGAT+GGG + chr5_2:6893357-6893376 Msa0753180:CDS 30.0%
!! GGTTTGTGTTTTTATATGGA+TGG + chr5_2:6893715-6893734 Msa0753180:intron 30.0%
!!! ATTTGGCTTGTTCATTTTAG+AGG + chr5_2:6893781-6893800 Msa0753180:intron 30.0%
!!! TTTGGCTTGTTCATTTTAGA+GGG + chr5_2:6893782-6893801 Msa0753180:intron 30.0%
TATAAAACACAACAATGGCA+AGG - chr5_2:6894121-6894140 None:intergenic 30.0%
! GCCATTGTTGTGTTTTATAT+TGG + chr5_2:6894122-6894141 Msa0753180:intron 30.0%
GCCAATATAAAACACAACAA+TGG - chr5_2:6894126-6894145 None:intergenic 30.0%
!! AACTAGTCTTATACATGTCT+GGG - chr5_2:6894259-6894278 None:intergenic 30.0%
!! AAACTAGTCTTATACATGTC+TGG - chr5_2:6894260-6894279 None:intergenic 30.0%
TTATCTATGTATAACTGCCT+CGG - chr5_2:6894285-6894304 None:intergenic 30.0%
ATCAGAAACCATGATAGATA+TGG - chr5_2:6894308-6894327 None:intergenic 30.0%
!! GTTTTTGTTTATCCCTTCTA+AGG + chr5_2:6894378-6894397 Msa0753180:intron 30.0%
ATTGTATTCTTCCATTTCGT+TGG + chr5_2:6894471-6894490 Msa0753180:intron 30.0%
ATCTGAATACAATGATGTTG+AGG + chr5_2:6894544-6894563 Msa0753180:intron 30.0%
! TGTATTGAAACAGAGGATTT+TGG + chr5_2:6894572-6894591 Msa0753180:intron 30.0%
AAGTCATAATGTAGCAACTT+TGG - chr5_2:6894709-6894728 None:intergenic 30.0%
!!! ATGGCAATAGAGAGATTTTT+TGG + chr5_2:6894775-6894794 Msa0753180:intron 30.0%
!!! CAATAGAGAGATTTTTTGGA+GGG + chr5_2:6894779-6894798 Msa0753180:intron 30.0%
ATCTTATCAAACTATCCATG+AGG - chr5_2:6894820-6894839 None:intergenic 30.0%
CTTAACCAATAATGATGTTG+AGG + chr5_2:6894876-6894895 Msa0753180:intron 30.0%
TAACCAATAATGATGTTGAG+GGG + chr5_2:6894878-6894897 Msa0753180:intron 30.0%
AAACATAAAATGCCTTGTAG+TGG - chr5_2:6895316-6895335 None:intergenic 30.0%
TAAAGAAAAGGGACGTTTAA+TGG + chr5_2:6895437-6895456 Msa0753180:intron 30.0%
ATTAAGAATATACCTGGACA+GGG - chr5_2:6895769-6895788 None:intergenic 30.0%
AATTAAGAATATACCTGGAC+AGG - chr5_2:6895770-6895789 None:intergenic 30.0%
!!! TCTCAATGGTTTTGTAACAA+TGG + chr5_2:6895794-6895813 Msa0753180:intron 30.0%
TTGAGGTTATCTAATAGCAT+GGG - chr5_2:6896113-6896132 None:intergenic 30.0%
! TTTGAGGTTATCTAATAGCA+TGG - chr5_2:6896114-6896133 None:intergenic 30.0%
CCTATATCATTATTGACCAT+GGG - chr5_2:6896155-6896174 None:intergenic 30.0%
TATAGGCAATTGTACATCTT+AGG + chr5_2:6896169-6896188 Msa0753180:intron 30.0%
!! ACCAAAGTCTCATTTGTTTT+GGG - chr5_2:6896218-6896237 None:intergenic 30.0%
! AACCAAAGTCTCATTTGTTT+TGG - chr5_2:6896219-6896238 None:intergenic 30.0%
!!! GTTTCTTGTTTTGTTGTCTT+TGG - chr5_2:6896285-6896304 None:intergenic 30.0%
!!! GAAGCTGTATAGTTTTGATT+AGG - chr5_2:6896378-6896397 None:intergenic 30.0%
AATCAAAACTATACAGCTTC+TGG + chr5_2:6896378-6896397 Msa0753180:CDS 30.0%
!! ACTGGTATTGATTTGATGAA+CGG + chr5_2:6896459-6896478 Msa0753180:CDS 30.0%
TGAAACTCTAGGTAAAATAG+AGG + chr5_2:6896674-6896693 Msa0753180:three_prime_UTR 30.0%
CAAACTAGTCAGCTTATTAA+TGG + chr5_2:6896751-6896770 Msa0753180:three_prime_UTR 30.0%
TCAGCTTATTAATGGAAGTT+TGG + chr5_2:6896759-6896778 Msa0753180:three_prime_UTR 30.0%
CTTATTAATGGAAGTTTGGT+AGG + chr5_2:6896763-6896782 Msa0753180:three_prime_UTR 30.0%
GATGGGAAAAGAAAAGAGTT+TGG - chr5_2:6892954-6892973 None:intergenic 35.0%
GTGCAGAGTGTAATAATGAT+GGG - chr5_2:6892971-6892990 None:intergenic 35.0%
AGTGCAGAGTGTAATAATGA+TGG - chr5_2:6892972-6892991 None:intergenic 35.0%
AATCATAGCTTGAACGCATT+TGG - chr5_2:6893044-6893063 None:intergenic 35.0%
ATGCAGAGAAAACAGAAAAG+GGG - chr5_2:6893170-6893189 None:intergenic 35.0%
!!! GAAGCTATGTCATTTTCTGA+TGG + chr5_2:6893356-6893375 Msa0753180:CDS 35.0%
!!! CAACATGGTAGTTTTAGTCA+TGG + chr5_2:6893494-6893513 Msa0753180:CDS 35.0%
CTGTCTGTGAAAAAGAAAAG+AGG + chr5_2:6893542-6893561 Msa0753180:CDS 35.0%
AAAAGAAAAGAGGAAGACCT+AGG + chr5_2:6893552-6893571 Msa0753180:CDS 35.0%
ATACTTTGGACCTCAAGAAT+TGG + chr5_2:6893861-6893880 Msa0753180:intron 35.0%
TTAGCAAGTGAACAACATCA+AGG - chr5_2:6893888-6893907 None:intergenic 35.0%
AAAGTCACTGTCTACCTAAA+GGG - chr5_2:6893954-6893973 None:intergenic 35.0%
AAAAGTCACTGTCTACCTAA+AGG - chr5_2:6893955-6893974 None:intergenic 35.0%
! TAGGTAGACAGTGACTTTTA+AGG + chr5_2:6893956-6893975 Msa0753180:intron 35.0%
GGAACAAAAATAGTTGCAAC+TGG - chr5_2:6894100-6894119 None:intergenic 35.0%
!! GTATAAGACTAGTTTAACCG+AGG + chr5_2:6894265-6894284 Msa0753180:intron 35.0%
!! TTTATCCCTTCTAAGGTGAA+TGG + chr5_2:6894385-6894404 Msa0753180:intron 35.0%
TTCATCCATTCACCTTAGAA+GGG - chr5_2:6894393-6894412 None:intergenic 35.0%
AATTACCTCTTGAGCTTCAA+TGG - chr5_2:6894454-6894473 None:intergenic 35.0%
TTGGTATCATTAGACCTATG+GGG - chr5_2:6894639-6894658 None:intergenic 35.0%
GTTGGTATCATTAGACCTAT+GGG - chr5_2:6894640-6894659 None:intergenic 35.0%
TGTTGGTATCATTAGACCTA+TGG - chr5_2:6894641-6894660 None:intergenic 35.0%
AAAAAAGCCTAAGAGTCGTA+TGG + chr5_2:6894756-6894775 Msa0753180:intron 35.0%
!!! GCAATAGAGAGATTTTTTGG+AGG + chr5_2:6894778-6894797 Msa0753180:intron 35.0%
TAACCCCTCAACATCATTAT+TGG - chr5_2:6894884-6894903 None:intergenic 35.0%
AACTTTGAGTACAAGCTTGA+AGG - chr5_2:6895107-6895126 None:intergenic 35.0%
TGTACTCAAAGTTCCTTGAA+TGG + chr5_2:6895114-6895133 Msa0753180:intron 35.0%
GTCATTAATTTCTGTCATCG+CGG + chr5_2:6895466-6895485 Msa0753180:intron 35.0%
GCTTCATATGAACAAACCTT+AGG - chr5_2:6895564-6895583 None:intergenic 35.0%
!! ATGCTTATCTGGTTCTTTCT+TGG + chr5_2:6895634-6895653 Msa0753180:CDS 35.0%
! TAGTGTTTCCCTTTCTAGTA+CGG + chr5_2:6895697-6895716 Msa0753180:CDS 35.0%
TTAAGTCAAAACACTTACGG+TGG + chr5_2:6895865-6895884 Msa0753180:intron 35.0%
CCCATGGTCAATAATGATAT+AGG + chr5_2:6896152-6896171 Msa0753180:intron 35.0%
GCCTATATCATTATTGACCA+TGG - chr5_2:6896156-6896175 None:intergenic 35.0%
!!! TCTCATTTGTTTTGGGGAAA+AGG - chr5_2:6896211-6896230 None:intergenic 35.0%
!!! CCAAAGTCTCATTTGTTTTG+GGG - chr5_2:6896217-6896236 None:intergenic 35.0%
!!! GCTGTATAGTTTTGATTAGG+TGG - chr5_2:6896375-6896394 None:intergenic 35.0%
ATCAAATCAATACCAGTGTG+TGG - chr5_2:6896456-6896475 None:intergenic 35.0%
!! CTGGTATTGATTTGATGAAC+GGG + chr5_2:6896460-6896479 Msa0753180:CDS 35.0%
! TGATTCGTTTGTTACAGCAT+AGG - chr5_2:6896615-6896634 None:intergenic 35.0%
GTGCAAAGAAATGAAACTCT+AGG + chr5_2:6896663-6896682 Msa0753180:three_prime_UTR 35.0%
GTTTGGTAGGAAATAGAGAA+TGG + chr5_2:6896776-6896795 Msa0753180:three_prime_UTR 35.0%
!!! ATGTCATTTTCTGATGGGTC+TGG + chr5_2:6893362-6893381 Msa0753180:CDS 40.0%
!! TTAGACAAAGCTCTAAACCC+AGG - chr5_2:6893431-6893450 None:intergenic 40.0%
! AGAGCTTTGTCTAATCCTCA+TGG + chr5_2:6893437-6893456 Msa0753180:CDS 40.0%
!! TTTTCAGCAGAGCATCAACA+TGG + chr5_2:6893479-6893498 Msa0753180:CDS 40.0%
CTCAAAGAAACAGGTACATC+AGG - chr5_2:6893587-6893606 None:intergenic 40.0%
GGAGAAAGTCTCAAAGAAAC+AGG - chr5_2:6893596-6893615 None:intergenic 40.0%
GAATTAGCAGTAGCAGACAT+AGG - chr5_2:6893617-6893636 None:intergenic 40.0%
TGCTAATTCCACTCCTGATT+CGG + chr5_2:6893628-6893647 Msa0753180:CDS 40.0%
ACATCAAGGACCAATTCTTG+AGG - chr5_2:6893874-6893893 None:intergenic 40.0%
! GCTAATAGATTGGTCCCTTT+AGG + chr5_2:6893937-6893956 Msa0753180:intron 40.0%
!! CAATTTGGTGTCTCTTGACT+TGG + chr5_2:6894167-6894186 Msa0753180:intron 40.0%
GTTCATCCATTCACCTTAGA+AGG - chr5_2:6894394-6894413 None:intergenic 40.0%
GCTTCAATGGTGATAACATG+AGG - chr5_2:6894441-6894460 None:intergenic 40.0%
TATCACCATTGAAGCTCAAG+AGG + chr5_2:6894446-6894465 Msa0753180:CDS 40.0%
TTCCATTTCGTTGGACGTAT+AGG + chr5_2:6894480-6894499 Msa0753180:intron 40.0%
AACCTATACGTCCAACGAAA+TGG - chr5_2:6894485-6894504 None:intergenic 40.0%
GGCTGTATGTATTGAAACAG+AGG + chr5_2:6894565-6894584 Msa0753180:intron 40.0%
GTCGATGTCAACAATGATGT+TGG - chr5_2:6894658-6894677 None:intergenic 40.0%
TCATTGTTGACATCGACGTA+AGG + chr5_2:6894661-6894680 Msa0753180:intron 40.0%
TCTATTGCCATACGACTCTT+AGG - chr5_2:6894766-6894785 None:intergenic 40.0%
ATGCAAGTGGAAATTGCTGA+AGG + chr5_2:6894903-6894922 Msa0753180:intron 40.0%
TTATGCATCTTGTCAGGAAC+TGG + chr5_2:6895204-6895223 Msa0753180:CDS 40.0%
TATGCATCTTGTCAGGAACT+GGG + chr5_2:6895205-6895224 Msa0753180:CDS 40.0%
CTCATATGTAACACTGACAC+TGG - chr5_2:6895268-6895287 None:intergenic 40.0%
CAGTGTCAGTGTTACATATG+AGG + chr5_2:6895266-6895285 Msa0753180:CDS 40.0%
TGAGGTTAGAGAACTAACAC+CGG + chr5_2:6895284-6895303 Msa0753180:intron 40.0%
CATAAAATGCCTTGTAGTGG+AGG - chr5_2:6895313-6895332 None:intergenic 40.0%
AGTTAGTACTGCTTAGCCTA+AGG + chr5_2:6895545-6895564 Msa0753180:intron 40.0%
TCTTTCTTGGTTGCTGAAGA+TGG + chr5_2:6895647-6895666 Msa0753180:CDS 40.0%
ATGACCATCCGTACTAGAAA+GGG - chr5_2:6895708-6895727 None:intergenic 40.0%
AGTACGGATGGTCATGTTAT+CGG + chr5_2:6895713-6895732 Msa0753180:CDS 40.0%
AACCAATCTAAATAGGCCCA+TGG + chr5_2:6896136-6896155 Msa0753180:intron 40.0%
CCCCAAAACAAATGAGACTT+TGG + chr5_2:6896214-6896233 Msa0753180:intron 40.0%
! GTAGTTTGCAGCTTTGTGTA+CGG + chr5_2:6896249-6896268 Msa0753180:CDS 40.0%
! GCTAATTTGTCACTACTCTG+AGG - chr5_2:6896336-6896355 None:intergenic 40.0%
! AGTGACAAATTAGCTTCTCC+AGG + chr5_2:6896342-6896361 Msa0753180:CDS 40.0%
!! AACTATACAGCTTCTGGAAC+AGG + chr5_2:6896384-6896403 Msa0753180:CDS 40.0%
! AAAAGTACACAACCACACAC+TGG + chr5_2:6896441-6896460 Msa0753180:CDS 40.0%
GAACGGGTGAAAGTTTATTC+AGG + chr5_2:6896476-6896495 Msa0753180:exon 40.0%
ACTCTAGGTAAAATAGAGGC+CGG + chr5_2:6896678-6896697 Msa0753180:three_prime_UTR 40.0%
TAGAGAATGGCTCTTTGATG+AGG + chr5_2:6896789-6896808 Msa0753180:three_prime_UTR 40.0%
ATGGGATAAGAGGGTAGTTC+AGG - chr5_2:6893067-6893086 None:intergenic 45.0%
TGTTTCAACAACCACCTCCT+GGG + chr5_2:6893411-6893430 Msa0753180:CDS 45.0%
GCTTTGTCTAATCCTCATGG+TGG + chr5_2:6893440-6893459 Msa0753180:CDS 45.0%
!! AATCCTCATGGTGGTTCTGA+TGG + chr5_2:6893449-6893468 Msa0753180:CDS 45.0%
GTGCCGTAGTTCCTTATTCA+GGG + chr5_2:6893516-6893535 Msa0753180:CDS 45.0%
TGCCGTAGTTCCTTATTCAG+GGG + chr5_2:6893517-6893536 Msa0753180:CDS 45.0%
CTCCCCTGAATAAGGAACTA+CGG - chr5_2:6893522-6893541 None:intergenic 45.0%
AGAGGAAGACCTAGGAAGTA+TGG + chr5_2:6893560-6893579 Msa0753180:CDS 45.0%
ACATCAGGACCATACTTCCT+AGG - chr5_2:6893572-6893591 None:intergenic 45.0%
AGGACGAAAGCAACACAAGT+AGG + chr5_2:6893976-6893995 Msa0753180:intron 45.0%
GAATGGATGAACAGTTCAGC+TGG + chr5_2:6894402-6894421 Msa0753180:CDS 45.0%
ATGTTGAGGGGTTATGCAAG+TGG + chr5_2:6894890-6894909 Msa0753180:intron 45.0%
TTCTTGGTTGCTGAAGATGG+TGG + chr5_2:6895650-6895669 Msa0753180:CDS 45.0%
ATGCCACCAGTTCTATTGTG+AGG - chr5_2:6895677-6895696 None:intergenic 45.0%
! GTTTCCCTTTCTAGTACGGA+TGG + chr5_2:6895701-6895720 Msa0753180:CDS 45.0%
CATGACCATCCGTACTAGAA+AGG - chr5_2:6895709-6895728 None:intergenic 45.0%
AAAACACTTACGGTGGCGAT+TGG + chr5_2:6895872-6895891 Msa0753180:intron 45.0%
ACTGTTTCCCTAAGCTATCC+TGG + chr5_2:6896034-6896053 Msa0753180:intron 45.0%
AAGCTCTCCAGGATAGCTTA+GGG - chr5_2:6896044-6896063 None:intergenic 45.0%
TATCCTGGAGAGCTTGTGAT+TGG + chr5_2:6896049-6896068 Msa0753180:intron 45.0%
TTTCCAATCACAAGCTCTCC+AGG - chr5_2:6896055-6896074 None:intergenic 45.0%
GACCATGGGCCTATTTAGAT+TGG - chr5_2:6896141-6896160 None:intergenic 45.0%
AATGAGACTTTGGTTGCTGC+AGG + chr5_2:6896224-6896243 Msa0753180:intron 45.0%
CGGGTGAAAGTTTATTCAGG+AGG + chr5_2:6896479-6896498 Msa0753180:exon 45.0%
!! AATTAAAAAAATATATACTT+TGG + chr5_2:6893847-6893866 Msa0753180:intron 5.0%
!! TATGATTTAAAAATATAATA+TGG - chr5_2:6894613-6894632 None:intergenic 5.0%
GTGTTTCAACAACCACCTCC+TGG + chr5_2:6893410-6893429 Msa0753180:CDS 50.0%
!! AAAGCTCTAAACCCAGGAGG+TGG - chr5_2:6893425-6893444 None:intergenic 50.0%
!! GACAAAGCTCTAAACCCAGG+AGG - chr5_2:6893428-6893447 None:intergenic 50.0%
GAACCATCAGAACCACCATG+AGG - chr5_2:6893455-6893474 None:intergenic 50.0%
! GGTGCCGTAGTTCCTTATTC+AGG + chr5_2:6893515-6893534 Msa0753180:CDS 50.0%
ACAGACAGCTCCCCTGAATA+AGG - chr5_2:6893530-6893549 None:intergenic 50.0%
!! CCACTCCTGATTCGGAGAAA+CGG + chr5_2:6893636-6893655 Msa0753180:CDS 50.0%
! TGTTGCTTCCTTCCACTTCC+CGG - chr5_2:6893677-6893696 None:intergenic 50.0%
AAGCAACAGCTAGCTGCTCT+AGG + chr5_2:6893689-6893708 Msa0753180:CDS 50.0%
! ACAGCTAGCTGCTCTAGGTA+TGG + chr5_2:6893694-6893713 Msa0753180:intron 50.0%
GATGAACAGTTCAGCTGGAC+AGG + chr5_2:6894407-6894426 Msa0753180:CDS 50.0%
AAAAACGTGCGCAAGCCTCA+TGG + chr5_2:6894802-6894821 Msa0753180:intron 50.0%
GACAAGATGCATAAAGCGCG+TGG - chr5_2:6895198-6895217 None:intergenic 50.0%
CGCGCTTTATGCATCTTGTC+AGG + chr5_2:6895198-6895217 Msa0753180:CDS 50.0%
ACACTGACACTGGTAGAAGC+AGG - chr5_2:6895258-6895277 None:intergenic 50.0%
GGTGGACCTCACAATAGAAC+TGG + chr5_2:6895668-6895687 Msa0753180:CDS 50.0%
GGACCTCACAATAGAACTGG+TGG + chr5_2:6895671-6895690 Msa0753180:CDS 50.0%
ACGGATGGTCATGTTATCGG+TGG + chr5_2:6895716-6895735 Msa0753180:CDS 50.0%
GATGGTCATGTTATCGGTGG+TGG + chr5_2:6895719-6895738 Msa0753180:CDS 50.0%
!! TTATCGGTGGTGGTGTTGCT+AGG + chr5_2:6895729-6895748 Msa0753180:CDS 50.0%
CAAGCTCTCCAGGATAGCTT+AGG - chr5_2:6896045-6896064 None:intergenic 50.0%
! GTTTGCAGCTTTGTGTACGG+TGG + chr5_2:6896252-6896271 Msa0753180:CDS 50.0%
TGATTAGGTGGCTCACTTCC+TGG - chr5_2:6896363-6896382 None:intergenic 50.0%
!! CTTCTGGAACAGGCACAATG+TGG + chr5_2:6896394-6896413 Msa0753180:CDS 50.0%
GCACAATGTGGCATGGATCA+AGG + chr5_2:6896406-6896425 Msa0753180:CDS 50.0%
CCGTTTCTCCGAATCAGGAG+TGG - chr5_2:6893639-6893658 None:intergenic 55.0%
TGACACTGGTAGAAGCAGGC+TGG - chr5_2:6895254-6895273 None:intergenic 55.0%
! TGCCTTGTAGTGGAGGTAGC+CGG - chr5_2:6895306-6895325 None:intergenic 55.0%
TATTGCTGCAAGCCCTGTCC+AGG + chr5_2:6895754-6895773 Msa0753180:CDS 55.0%
ACTTACGGTGGCGATTGGCA+TGG + chr5_2:6895877-6895896 Msa0753180:intron 55.0%
GAGACTTTGGTTGCTGCAGG+TGG + chr5_2:6896227-6896246 Msa0753180:intron 55.0%
GGAACAGGCACAATGTGGCA+TGG + chr5_2:6896399-6896418 Msa0753180:CDS 55.0%
CTCGGCCGTTTCTCCGAATC+AGG - chr5_2:6893644-6893663 None:intergenic 60.0%
GATTCGGAGAAACGGCCGAG+AGG + chr5_2:6893644-6893663 Msa0753180:CDS 60.0%
TGCTTCCTTCCACTTCCCGG+TGG - chr5_2:6893674-6893693 None:intergenic 60.0%
! CACCGGCTACCTCCACTACA+AGG + chr5_2:6895301-6895320 Msa0753180:intron 60.0%
CGGAGAAACGGCCGAGAGGA+CGG + chr5_2:6893648-6893667 Msa0753180:CDS 65.0%
CTTCCCGGTGGCCGTCCTCT+CGG - chr5_2:6893662-6893681 None:intergenic 70.0%
AGAGGACGGCCACCGGGAAG+TGG + chr5_2:6893662-6893681 Msa0753180:CDS 70.0%
GACGGCCACCGGGAAGTGGA+AGG + chr5_2:6893666-6893685 Msa0753180:CDS 70.0%
ACGGCCGAGAGGACGGCCAC+CGG + chr5_2:6893655-6893674 Msa0753180:CDS 75.0%
! CGGCCGAGAGGACGGCCACC+GGG + chr5_2:6893656-6893675 Msa0753180:CDS 80.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 6892919 6896850 6892919 ID=Msa0753180;Name=Msa0753180
chr5_2 mRNA 6892919 6896850 6892919 ID=Msa0753180-mRNA-1;Parent=Msa0753180;Name=Msa0753180-mRNA-1;_AED=0.02;_eAED=0.02;_QI=425|1|1|1|1|1|5|365|321
chr5_2 exon 6892919 6893710 6892919 ID=Msa0753180-mRNA-1:exon:3033;Parent=Msa0753180-mRNA-1
chr5_2 exon 6894400 6894467 6894400 ID=Msa0753180-mRNA-1:exon:3034;Parent=Msa0753180-mRNA-1
chr5_2 exon 6895156 6895287 6895156 ID=Msa0753180-mRNA-1:exon:3035;Parent=Msa0753180-mRNA-1
chr5_2 exon 6895617 6895775 6895617 ID=Msa0753180-mRNA-1:exon:3036;Parent=Msa0753180-mRNA-1
chr5_2 exon 6896246 6896850 6896246 ID=Msa0753180-mRNA-1:exon:3037;Parent=Msa0753180-mRNA-1
chr5_2 five_prime_UTR 6892919 6893343 6892919 ID=Msa0753180-mRNA-1:five_prime_utr;Parent=Msa0753180-mRNA-1
chr5_2 CDS 6893344 6893710 6893344 ID=Msa0753180-mRNA-1:cds;Parent=Msa0753180-mRNA-1
chr5_2 CDS 6894400 6894467 6894400 ID=Msa0753180-mRNA-1:cds;Parent=Msa0753180-mRNA-1
chr5_2 CDS 6895156 6895287 6895156 ID=Msa0753180-mRNA-1:cds;Parent=Msa0753180-mRNA-1
chr5_2 CDS 6895617 6895775 6895617 ID=Msa0753180-mRNA-1:cds;Parent=Msa0753180-mRNA-1
chr5_2 CDS 6896246 6896485 6896246 ID=Msa0753180-mRNA-1:cds;Parent=Msa0753180-mRNA-1
chr5_2 three_prime_UTR 6896486 6896850 6896486 ID=Msa0753180-mRNA-1:three_prime_utr;Parent=Msa0753180-mRNA-1
Gene Sequence

>Msa0753180

ATGGATGAGAGAGAAGCTATGTCATTTTCTGATGGGTCTGGTTCATATTACATGCATAGAGAAAGAGTGTTTCAACAACCACCTCCTGGGTTTAGAGCTTTGTCTAATCCTCATGGTGGTTCTGATGGTTCTGCATTTTCAGCAGAGCATCAACATGGTAGTTTTAGTCATGGTGCCGTAGTTCCTTATTCAGGGGAGCTGTCTGTGAAAAAGAAAAGAGGAAGACCTAGGAAGTATGGTCCTGATGTACCTGTTTCTTTGAGACTTTCTCCTATGTCTGCTACTGCTAATTCCACTCCTGATTCGGAGAAACGGCCGAGAGGACGGCCACCGGGAAGTGGAAGGAAGCAACAGCTAGCTGCTCTAGGTGAATGGATGAACAGTTCAGCTGGACAGGCTTTTTCACCTCATGTTATCACCATTGAAGCTCAAGAGGACATTGTAGCAAAGTTATTGTCATTTTCACAACATAGACCACGCGCTTTATGCATCTTGTCAGGAACTGGGACTGTATCTTCAGTCACTCTGCGCCAGCCTGCTTCTACCAGTGTCAGTGTTACATATGAGGGTCGATTCCAAATATTATGCTTATCTGGTTCTTTCTTGGTTGCTGAAGATGGTGGACCTCACAATAGAACTGGTGGCATTAGTGTTTCCCTTTCTAGTACGGATGGTCATGTTATCGGTGGTGGTGTTGCTAGGCTTATTGCTGCAAGCCCTGTCCAGGTGGTAGTTTGCAGCTTTGTGTACGGTGGTTCTAAGCCAAAGACAACAAAACAAGAAACTGCTGCAAAAGAAGATGATGATTCTGAGCCTCAGAGTAGTGACAAATTAGCTTCTCCAGGAAGTGAGCCACCTAATCAAAACTATACAGCTTCTGGAACAGGCACAATGTGGCATGGATCAAGGACAGTAGACGTGAAAAGTACACAACCACACACTGGTATTGATTTGATGAACGGGTGA
Protein sequence

>Msa0753180

MDEREAMSFSDGSGSYYMHRERVFQQPPPGFRALSNPHGGSDGSAFSAEHQHGSFSHGAVVPYSGELSVKKKRGRPRKYGPDVPVSLRLSPMSATANSTPDSEKRPRGRPPGSGRKQQLAALGEWMNSSAGQAFSPHVITIEAQEDIVAKLLSFSQHRPRALCILSGTGTVSSVTLRQPASTSVSVTYEGRFQILCLSGSFLVAEDGGPHNRTGGISVSLSSTDGHVIGGGVARLIAASPVQVVVCSFVYGGSKPKTTKQETAAKEDDDSEPQSSDKLASPGSEPPNQNYTASGTGTMWHGSRTVDVKSTQPHTGIDLMNG*