AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1358220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1358220 MtrunA17_Chr5g0397551 95.327 321 15 0 1 321 1 321 0.0 627
Msa1358220 MtrunA17_Chr8g0386741 64.306 353 92 8 1 321 1 351 1.27e-129 373
Msa1358220 MtrunA17_Chr8g0349091 48.649 259 124 5 69 321 88 343 6.61e-68 216
Msa1358220 MtrunA17_Chr7g0247431 43.220 354 160 13 1 321 1 346 1.07e-61 199
Msa1358220 MtrunA17_Chr4g0054661 50.521 192 76 6 70 249 73 257 1.70e-48 165
Msa1358220 MtrunA17_Chr7g0245841 45.575 226 114 4 68 289 58 278 1.37e-46 160
Msa1358220 MtrunA17_Chr1g0179461 44.286 210 103 3 66 261 65 274 4.39e-46 160
Msa1358220 MtrunA17_Chr8g0351761 41.923 260 132 5 68 312 69 324 3.14e-44 154
Msa1358220 MtrunA17_Chr4g0056761 49.519 208 92 6 70 264 72 279 1.59e-40 144
Msa1358220 MtrunA17_Chr1g0188211 45.370 216 94 7 59 251 37 251 3.47e-39 141
Msa1358220 MtrunA17_Chr5g0398621 40.670 209 106 3 46 249 22 217 3.66e-38 135
Msa1358220 MtrunA17_Chr6g0476061 37.234 282 138 9 1 264 1 261 2.64e-31 119
Msa1358220 MtrunA17_Chr7g0274821 37.647 255 131 8 69 317 73 305 3.48e-29 115
Msa1358220 MtrunA17_Chr4g0027371 46.923 130 65 3 123 248 8 137 6.95e-28 108
Msa1358220 MtrunA17_Chr4g0027331 46.565 131 66 3 123 249 8 138 2.09e-27 104
Msa1358220 MtrunA17_Chr1g0190011 38.596 228 107 11 70 285 43 249 3.54e-27 108
Msa1358220 MtrunA17_Chr4g0027351 47.154 123 61 3 123 243 8 128 1.46e-25 99.8
Msa1358220 MtrunA17_Chr1g0165101 37.037 216 107 6 59 252 74 282 3.03e-25 103
Msa1358220 MtrunA17_Chr3g0133051 35.542 166 102 3 85 248 55 217 8.65e-24 98.6
Msa1358220 MtrunA17_Chr5g0443311 37.427 171 98 4 81 251 32 193 3.90e-21 90.9
Msa1358220 MtrunA17_Chr5g0398531 38.323 167 89 4 104 269 100 253 1.19e-20 90.9
Msa1358220 MtrunA17_Chr5g0427311 40.476 126 70 4 126 248 72 195 3.34e-20 87.8
Msa1358220 MtrunA17_Chr8g0351651 40.411 146 80 3 104 248 86 225 6.64e-20 88.2
Msa1358220 MtrunA17_Chr5g0417581 38.333 120 71 3 125 242 10 128 2.59e-19 84.3
Msa1358220 MtrunA17_Chr1g0168121 38.776 147 83 4 103 248 41 181 3.90e-19 85.5
Msa1358220 MtrunA17_Chr6g0476241 33.981 206 111 7 70 270 120 305 3.47e-17 80.5
Msa1358220 MtrunA17_Chr4g0027301 39.516 124 71 3 124 243 16 139 4.25e-17 77.0
Msa1358220 MtrunA17_Chr1g0190051 35.593 177 101 5 96 271 66 230 1.38e-16 79.0
Msa1358220 MtrunA17_Chr3g0112131 40.678 118 66 3 132 248 104 218 2.43e-14 72.4
Msa1358220 MtrunA17_Chr7g0250031 46.970 66 35 0 137 202 87 152 3.95e-14 71.2
Msa1358220 MtrunA17_Chr4g0054651 38.261 115 63 2 137 248 106 215 5.10e-14 71.2
Msa1358220 MtrunA17_Chr3g0094471 29.412 170 90 4 104 248 55 219 1.08e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1358220 AT1G63470.1 48.958 384 127 13 1 321 1 378 3.65e-94 284
Msa1358220 AT1G63480.2 47.059 340 125 11 1 294 1 331 5.02e-81 250
Msa1358220 AT1G63480.1 47.059 340 125 11 1 294 1 331 5.02e-81 250
Msa1358220 AT1G63480.5 46.407 334 124 11 7 294 1 325 1.48e-77 241
Msa1358220 AT1G63480.7 46.407 334 124 11 7 294 1 325 1.48e-77 241
Msa1358220 AT1G63480.4 46.407 334 124 11 7 294 1 325 1.48e-77 241
Msa1358220 AT1G63480.3 46.407 334 124 11 7 294 1 325 1.48e-77 241
Msa1358220 AT1G63480.6 46.407 334 124 11 7 294 1 325 1.48e-77 241
Msa1358220 AT2G45850.1 43.296 358 156 11 1 321 1 348 1.70e-72 228
Msa1358220 AT2G45850.2 43.296 358 156 11 1 321 1 348 1.70e-72 228
Msa1358220 AT3G61310.1 41.667 360 165 9 1 321 1 354 3.73e-67 214
Msa1358220 AT2G45850.3 46.403 278 118 5 1 248 1 277 2.15e-61 197
Msa1358220 AT4G12080.1 49.074 216 86 5 69 261 88 302 2.70e-56 186
Msa1358220 AT2G33620.1 52.261 199 82 5 64 254 91 284 7.34e-54 180
Msa1358220 AT2G33620.4 52.261 199 82 5 64 254 91 284 7.34e-54 180
Msa1358220 AT2G33620.2 52.261 199 82 5 64 254 91 284 7.34e-54 180
Msa1358220 AT2G33620.3 52.261 199 82 5 64 254 91 284 7.34e-54 180
Msa1358220 AT4G17950.1 43.154 241 94 7 69 275 130 361 3.05e-46 162
Msa1358220 AT4G25320.1 35.842 279 131 5 69 308 85 354 9.04e-45 157
Msa1358220 AT4G22770.2 45.175 228 99 7 69 281 71 287 1.03e-43 153
Msa1358220 AT4G22770.1 45.175 228 99 7 69 281 71 287 1.03e-43 153
Msa1358220 AT5G46640.1 45.089 224 98 5 66 269 98 316 1.61e-43 154
Msa1358220 AT4G00200.2 47.573 206 82 4 59 249 45 239 1.50e-39 142
Msa1358220 AT4G00200.1 47.573 206 82 4 59 249 45 239 1.50e-39 142
Msa1358220 AT5G62260.1 40.000 215 104 4 58 249 64 276 2.13e-38 140
Msa1358220 AT5G62260.3 40.000 215 104 4 58 249 64 276 2.13e-38 140
Msa1358220 AT5G51590.1 39.091 220 97 4 69 251 77 296 1.43e-37 139
Msa1358220 AT5G62260.2 38.605 215 107 4 58 249 64 276 2.07e-36 132
Msa1358220 AT3G04590.1 37.615 218 113 6 41 248 79 283 6.49e-35 129
Msa1358220 AT3G04590.2 37.615 218 113 6 41 248 79 283 1.30e-34 130
Msa1358220 AT3G60870.1 34.906 212 101 8 46 248 13 196 6.98e-23 96.3
Msa1358220 AT1G76500.1 38.065 155 80 4 104 248 72 220 2.47e-20 89.7
Msa1358220 AT5G49700.1 33.140 172 92 6 92 248 39 202 3.82e-19 85.9
Msa1358220 AT4G14465.1 42.000 100 55 1 103 202 66 162 4.61e-18 83.2
Msa1358220 AT2G45430.1 34.066 182 102 5 104 280 89 257 1.03e-17 82.8
Msa1358220 AT2G36560.1 37.190 121 73 3 131 248 102 222 7.05e-17 81.6
Msa1358220 AT4G12050.1 40.136 147 80 4 104 248 118 258 7.22e-17 80.5
Msa1358220 AT3G04570.1 35.294 153 86 3 104 248 80 227 1.30e-16 79.3
Msa1358220 AT1G14490.2 34.132 167 96 5 87 248 11 168 1.78e-16 77.8
Msa1358220 AT2G35270.1 34.459 148 86 3 104 248 78 217 2.38e-16 78.2
Msa1358220 AT4G22810.1 38.926 149 81 4 104 248 105 247 2.77e-16 78.6
Msa1358220 AT1G14490.1 34.899 149 87 4 105 248 6 149 3.81e-16 76.3
Msa1358220 AT2G42940.1 38.655 119 68 2 86 202 33 148 2.27e-15 75.1
Msa1358220 AT5G28590.1 35.484 155 69 5 128 281 24 148 9.62e-14 69.7
Msa1358220 AT1G20900.1 36.129 155 83 4 104 248 86 234 1.05e-13 70.9
Msa1358220 AT3G55560.1 40.351 114 65 3 137 249 118 229 2.56e-12 67.0
Msa1358220 AT4G17800.1 40.909 66 39 0 137 202 112 177 6.82e-12 65.5
Msa1358220 AT4G35390.1 35.811 148 86 4 104 248 63 204 4.55e-11 63.2

Find 112 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACTAGTCAGCTTATTAA+TGG 0.189729 tig0016220:-369332 Msa1358220:three_prime_UTR
ATGCTTATCTGGTTCTTTCT+TGG 0.208399 tig0016220:-370448 Msa1358220:CDS
TGAAGAGAGAAAACTCAAAA+TGG 0.252221 tig0016220:+373019 None:intergenic
AACCAGATAAGCATAATATT+TGG 0.258954 tig0016220:+370457 None:intergenic
GGTGCCGTAGTTCCTTATTC+AGG 0.267238 tig0016220:-372582 Msa1358220:CDS
TTCCAAATATTATGCTTATC+TGG 0.278941 tig0016220:-370459 Msa1358220:CDS
AATCAAAACTATACAGCTTC+TGG 0.279195 tig0016220:-369696 Msa1358220:CDS
TGATTAGGTGGCTCACTTCC+TGG 0.283204 tig0016220:+369714 None:intergenic
TGTTGCTTCCTTCCACTTCC+CGG 0.301637 tig0016220:+372423 None:intergenic
GGCCGGTTCTATTTGACTTT+AGG 0.307914 tig0016220:-369379 Msa1358220:three_prime_UTR
CTCGGCCGTTTCTCCGAATC+AGG 0.320939 tig0016220:+372456 None:intergenic
AACCCTAGATTTCAAAATCT+AGG 0.341061 tig0016220:-373094 Msa1358220:five_prime_UTR
TCTTTCTTGGTTGCTGAAGA+TGG 0.344581 tig0016220:-370435 Msa1358220:CDS
TTATGCATCTTGTCAGGAAC+TGG 0.345983 tig0016220:-370893 Msa1358220:CDS
ACAGACAGCTCCCCTGAATA+AGG 0.360120 tig0016220:+372570 None:intergenic
TCAGCTTATTAATGGAAGTT+TGG 0.364139 tig0016220:-369324 Msa1358220:three_prime_UTR
GATGGGAAAAGAAAAGAGTT+TGG 0.366174 tig0016220:+373151 None:intergenic
GAACGGGTGAAAGTTTATTC+AGG 0.376058 tig0016220:-369598 Msa1358220:exon
ATGGGATAAGAGGGTAGTTC+AGG 0.377740 tig0016220:+373038 None:intergenic
AATTACCTCTTGAGCTTCAA+TGG 0.384245 tig0016220:+371646 None:intergenic
AACTATACAGCTTCTGGAAC+AGG 0.388590 tig0016220:-369690 Msa1358220:CDS
TTTATCCCTTCTAAGGTGAA+TGG 0.390199 tig0016220:-371712 Msa1358220:intron
AATCATAGCTGGAACGCATT+TGG 0.390721 tig0016220:+373061 None:intergenic
AAAACTCAAAATGGGATAAG+AGG 0.394158 tig0016220:+373028 None:intergenic
TGCTAATTCCACTCCTGATT+CGG 0.413237 tig0016220:-372469 Msa1358220:CDS
ATTCAATATCTAGAGCTACT+AGG 0.420750 tig0016220:-372966 Msa1358220:five_prime_UTR
AATGCAGAGAAAACAGAAAA+GGG 0.430304 tig0016220:+372934 None:intergenic
AGTACGGATGGTCATGTTAT+CGG 0.434375 tig0016220:-370369 Msa1358220:CDS
AAATGCAGAGAAAACAGAAA+AGG 0.437943 tig0016220:+372933 None:intergenic
AGAGGAAGACCTAGGAAGTA+TGG 0.440247 tig0016220:-372537 Msa1358220:CDS
CTTATTAATGGAAGTTTGGT+AGG 0.440811 tig0016220:-369320 Msa1358220:three_prime_UTR
GGAGAAAGTCTCAAAGAAAC+AGG 0.441189 tig0016220:+372504 None:intergenic
TAGTGTTTCCCTTTCTAGTA+CGG 0.442988 tig0016220:-370385 Msa1358220:CDS
AGAGGACGGCCACCGGGAAG+TGG 0.446219 tig0016220:-372435 Msa1358220:CDS
GATGAACAGTTCAGCTGGAC+AGG 0.447850 tig0016220:-371690 Msa1358220:CDS
CTCAAAGAAACAGGTACATC+AGG 0.448430 tig0016220:+372513 None:intergenic
GTGCCGTAGTTCCTTATTCA+GGG 0.450813 tig0016220:-372581 Msa1358220:CDS
ACGGCCGAGAGGACGGCCAC+CGG 0.451090 tig0016220:-372442 Msa1358220:CDS
ACCCTAGATTTCAAAATCTA+GGG 0.451823 tig0016220:-373093 Msa1358220:five_prime_UTR
CGCGCTTTATGCATCTTGTC+AGG 0.452328 tig0016220:-370899 Msa1358220:CDS
GTGTTTCAACAACCACCTCC+TGG 0.454565 tig0016220:-372687 Msa1358220:CDS
AACCTAAAGTCAAATAGAAC+CGG 0.458889 tig0016220:+369377 None:intergenic
CGGCCGAGAGGACGGCCACC+GGG 0.469316 tig0016220:-372441 Msa1358220:CDS
AATTAAGAATATACCTGGAC+AGG 0.469513 tig0016220:+370315 None:intergenic
AATCCTCATGGTGGTTCTGA+TGG 0.470012 tig0016220:-372648 Msa1358220:CDS
AAAAGAAAAGAGTTTGGTTG+TGG 0.471775 tig0016220:+373157 None:intergenic
GAAGAGAGAAAACTCAAAAT+GGG 0.473523 tig0016220:+373020 None:intergenic
AGTGCAGAGTGTAATAATGA+TGG 0.475460 tig0016220:+373133 None:intergenic
CATGACCATCCGTACTAGAA+AGG 0.475896 tig0016220:+370376 None:intergenic
TATTGCTGCAAGCCCTGTCC+AGG 0.478697 tig0016220:-370328 Msa1358220:intron
TTCAATATCTAGAGCTACTA+GGG 0.479360 tig0016220:-372965 Msa1358220:five_prime_UTR
CTGGTATTGATTTGATGAAC+GGG 0.480347 tig0016220:-369614 Msa1358220:CDS
ATGACCATCCGTACTAGAAA+GGG 0.483763 tig0016220:+370377 None:intergenic
TTATCGGTGGTGGTGTTGCT+AGG 0.492524 tig0016220:-370353 Msa1358220:CDS
CAGTGTCAGTGTTACATATG+AGG 0.494038 tig0016220:-370831 Msa1358220:intron
AGAGCTTTGTCTAATCCTCA+TGG 0.497003 tig0016220:-372660 Msa1358220:CDS
GGTGGACCTCACAATAGAAC+TGG 0.506766 tig0016220:-370414 Msa1358220:CDS
GAATGGATGAACAGTTCAGC+TGG 0.511176 tig0016220:-371695 Msa1358220:CDS
CTTCCCGGTGGCCGTCCTCT+CGG 0.520916 tig0016220:+372438 None:intergenic
TGAAACTCTAGGTAAAATAG+AGG 0.527313 tig0016220:-369400 Msa1358220:three_prime_UTR
GGTAGTTCAGGAATCATAGC+TGG 0.531965 tig0016220:+373050 None:intergenic
CCACTCCTGATTCGGAGAAA+CGG 0.532902 tig0016220:-372461 Msa1358220:CDS
AGTGACAAATTAGCTTCTCC+AGG 0.534618 tig0016220:-369732 Msa1358220:CDS
GTTTCCCTTTCTAGTACGGA+TGG 0.539742 tig0016220:-370381 Msa1358220:CDS
GTGCAAAGAAATGAAACTCT+AGG 0.541757 tig0016220:-369411 Msa1358220:three_prime_UTR
ACATCAGGACCATACTTCCT+AGG 0.542327 tig0016220:+372528 None:intergenic
TGATTCGTTTGTTACAGCAT+AGG 0.543040 tig0016220:+369462 None:intergenic
AAGCAACAGCTAGCTGCTCT+AGG 0.543103 tig0016220:-372408 Msa1358220:intron
CGGAGAAACGGCCGAGAGGA+CGG 0.543303 tig0016220:-372449 Msa1358220:CDS
GCACAATGTGGCATGGATCA+AGG 0.545853 tig0016220:-369668 Msa1358220:CDS
TTCTTGGTTGCTGAAGATGG+TGG 0.546001 tig0016220:-370432 Msa1358220:CDS
GACGGCCACCGGGAAGTGGA+AGG 0.550895 tig0016220:-372431 Msa1358220:CDS
TATGCATCTTGTCAGGAACT+GGG 0.554881 tig0016220:-370892 Msa1358220:CDS
GTAGTTTGCAGCTTTGTGTA+CGG 0.556100 tig0016220:-369825 Msa1358220:CDS
TGTTTCAACAACCACCTCCT+GGG 0.564423 tig0016220:-372686 Msa1358220:CDS
GTTTGGTAGGAAATAGAGAA+TGG 0.564956 tig0016220:-369307 Msa1358220:three_prime_UTR
CTCATATGTAACACTGACAC+TGG 0.565778 tig0016220:+370832 None:intergenic
GAATTAGCAGTAGCAGACAT+AGG 0.567416 tig0016220:+372483 None:intergenic
CTCCCCTGAATAAGGAACTA+CGG 0.572244 tig0016220:+372578 None:intergenic
GTGCAGAGTGTAATAATGAT+GGG 0.575446 tig0016220:+373134 None:intergenic
AAACTCAAAATGGGATAAGA+GGG 0.580219 tig0016220:+373029 None:intergenic
ACTCTAGGTAAAATAGAGGC+CGG 0.582374 tig0016220:-369396 Msa1358220:three_prime_UTR
TATCACCATTGAAGCTCAAG+AGG 0.586931 tig0016220:-371651 Msa1358220:intron
ACACTGACACTGGTAGAAGC+AGG 0.587023 tig0016220:+370842 None:intergenic
GATGGTCATGTTATCGGTGG+TGG 0.597066 tig0016220:-370363 Msa1358220:CDS
AAAAGAAAAGAGGAAGACCT+AGG 0.598976 tig0016220:-372545 Msa1358220:CDS
CCGTTTCTCCGAATCAGGAG+TGG 0.602529 tig0016220:+372461 None:intergenic
TGACACTGGTAGAAGCAGGC+TGG 0.603686 tig0016220:+370846 None:intergenic
AAAGCTCTAAACCCAGGAGG+TGG 0.606520 tig0016220:+372675 None:intergenic
GGAACAGGCACAATGTGGCA+TGG 0.608270 tig0016220:-369675 Msa1358220:CDS
CGGGTGAAAGTTTATTCAGG+AGG 0.610764 tig0016220:-369595 Msa1358220:exon
TGCCGTAGTTCCTTATTCAG+GGG 0.617863 tig0016220:-372580 Msa1358220:CDS
TAGAGAATGGCTCTTTGATG+AGG 0.620948 tig0016220:-369294 Msa1358220:three_prime_UTR
GTTTGCAGCTTTGTGTACGG+TGG 0.633716 tig0016220:-369822 Msa1358220:CDS
GCTTTGTCTAATCCTCATGG+TGG 0.633942 tig0016220:-372657 Msa1358220:CDS
ACTGGTATTGATTTGATGAA+CGG 0.640757 tig0016220:-369615 Msa1358220:CDS
ATTAAGAATATACCTGGACA+GGG 0.640852 tig0016220:+370316 None:intergenic
ATGCAGAGAAAACAGAAAAG+GGG 0.641114 tig0016220:+372935 None:intergenic
GGACCTCACAATAGAACTGG+TGG 0.645571 tig0016220:-370411 Msa1358220:CDS
GACAAGATGCATAAAGCGCG+TGG 0.650446 tig0016220:+370902 None:intergenic
ACGGATGGTCATGTTATCGG+TGG 0.655178 tig0016220:-370366 Msa1358220:CDS
ATCAAATCAATACCAGTGTG+TGG 0.655711 tig0016220:+369621 None:intergenic
TGCTTCCTTCCACTTCCCGG+TGG 0.663805 tig0016220:+372426 None:intergenic
AAAAGTACACAACCACACAC+TGG 0.665666 tig0016220:-369633 Msa1358220:CDS
TTAGACAAAGCTCTAAACCC+AGG 0.670436 tig0016220:+372669 None:intergenic
ATGCCACCAGTTCTATTGTG+AGG 0.672283 tig0016220:+370408 None:intergenic
GCTAATTTGTCACTACTCTG+AGG 0.677251 tig0016220:+369741 None:intergenic
GATTCGGAGAAACGGCCGAG+AGG 0.704001 tig0016220:-372453 Msa1358220:CDS
CTTCTGGAACAGGCACAATG+TGG 0.706254 tig0016220:-369680 Msa1358220:CDS
GACAAAGCTCTAAACCCAGG+AGG 0.733182 tig0016220:+372672 None:intergenic
GCTTCAATGGTGATAACATG+AGG 0.739912 tig0016220:+371659 None:intergenic
GAACCATCAGAACCACCATG+AGG 0.742787 tig0016220:+372645 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAAATTATAACTATTTAA+GGG + tig0016220:371716-371735 None:intergenic 10.0%
!! AACTAAATTATAACTATTTA+AGG + tig0016220:371717-371736 None:intergenic 10.0%
!! AACTTTAGTAAAAAAAAAGT+TGG - tig0016220:369595-369614 Msa1358220:exon 15.0%
!! ACTTTAGTAAAAAAAAAGTT+GGG - tig0016220:369596-369615 Msa1358220:exon 15.0%
!! AAAAATATAATATGGAAAGT+CGG + tig0016220:370946-370965 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTTTGCAG+TGG - tig0016220:371876-371895 Msa1358220:intron 15.0%
!! TTGATTGTATGTATTGTTTA+AGG - tig0016220:370086-370105 Msa1358220:intron 20.0%
!! AATTACTGAATAATAACACT+TGG + tig0016220:370493-370512 None:intergenic 20.0%
!!! AGTGTTATTATTCAGTAATT+TGG - tig0016220:370493-370512 Msa1358220:intron 20.0%
!! ACAACTAAATATAAACAAAG+TGG + tig0016220:370854-370873 None:intergenic 20.0%
!! ATTTAAGGGATTTAGTAAAA+GGG + tig0016220:371702-371721 None:intergenic 20.0%
!! TATTTAAGGGATTTAGTAAA+AGG + tig0016220:371703-371722 None:intergenic 20.0%
!! AGTTATGACTATTAAAGAAA+AGG - tig0016220:371766-371785 Msa1358220:intron 20.0%
!! GTTATGACTATTAAAGAAAA+GGG - tig0016220:371767-371786 Msa1358220:intron 20.0%
!!! TTTTATTTTTCATGTTTTGC+AGG - tig0016220:371951-371970 Msa1358220:intron 20.0%
!!! TTTATTTTTCATGTTTTGCA+GGG - tig0016220:371952-371971 Msa1358220:intron 20.0%
!!! TTAAGTTGTTTATCTAAACA+GGG + tig0016220:372268-372287 None:intergenic 20.0%
!!! ATTAAGTTGTTTATCTAAAC+AGG + tig0016220:372269-372288 None:intergenic 20.0%
!! ACTGTATTTATATAAGCTAT+AGG - tig0016220:372372-372391 Msa1358220:intron 20.0%
!!! TTTCATACTTTTTTGTCATC+TGG - tig0016220:369556-369575 Msa1358220:three_prime_UTR 25.0%
!!! TTCATACTTTTTTGTCATCT+GGG - tig0016220:369557-369576 Msa1358220:three_prime_UTR 25.0%
!! TTTTAGTGTTAGTTAATGCA+TGG - tig0016220:369666-369685 Msa1358220:CDS 25.0%
!!! GTATGGTTTGTGTTTTTATA+TGG - tig0016220:370052-370071 Msa1358220:intron 25.0%
! GTATGTATTGTTTAAGGATT+TGG - tig0016220:370092-370111 Msa1358220:intron 25.0%
! AAGGATTTGGATTTGTAATT+TGG - tig0016220:370105-370124 Msa1358220:intron 25.0%
!!! TTATCAACTTGCTAATAGAT+TGG - tig0016220:370268-370287 Msa1358220:intron 25.0%
!! AAGTATAAAGCATCTAGAAA+TGG + tig0016220:370376-370395 None:intergenic 25.0%
! GATAAAAGCAAAAGAAAAGA+AGG + tig0016220:370419-370438 None:intergenic 25.0%
!! ATTGTTGTGTTTTATATTGG+CGG - tig0016220:370466-370485 Msa1358220:CDS 25.0%
! GTCAAAAATGACTAAATTGA+TGG - tig0016220:370554-370573 Msa1358220:intron 25.0%
!! ATGACTAAATTGATGGTAAT+TGG - tig0016220:370561-370580 Msa1358220:intron 25.0%
! ATAGATAACCATATCTATCA+TGG - tig0016220:370638-370657 Msa1358220:intron 25.0%
! TTTAAATCATAATACCCCAT+AGG - tig0016220:370963-370982 Msa1358220:intron 25.0%
! TTAACCAATAATGATGTTGA+GGG - tig0016220:371218-371237 Msa1358220:intron 25.0%
! CAAAAGAAAATATCCATTCA+AGG + tig0016220:371471-371490 None:intergenic 25.0%
!!! TGGATATTTTCTTTTGTTTC+AGG - tig0016220:371475-371494 Msa1358220:intron 25.0%
! TTCCAAATATTATGCTTATC+TGG - tig0016220:371979-371998 Msa1358220:intron 25.0%
! AACCAGATAAGCATAATATT+TGG + tig0016220:371984-372003 None:intergenic 25.0%
! ATTGCAATTAAGAATATACC+TGG + tig0016220:372131-372150 None:intergenic 25.0%
! ATTCTTAATTGCAATCTCAA+TGG - tig0016220:372136-372155 Msa1358220:intron 25.0%
! ACATTAAGTCAAAACACTTA+CGG - tig0016220:372226-372245 Msa1358220:intron 25.0%
!!! TATTTGGATTGGTTTATTTG+AGG + tig0016220:372494-372513 None:intergenic 25.0%
! TCAAATAAACCAATCCAAAT+AGG - tig0016220:372493-372512 Msa1358220:CDS 25.0%
!! TGTAACAAACGAATCATTTT+AGG - tig0016220:372983-373002 Msa1358220:five_prime_UTR 25.0%
!! GTAACAAACGAATCATTTTA+GGG - tig0016220:372984-373003 Msa1358220:five_prime_UTR 25.0%
AAAAGAAAAGAGTTTGGTTG+TGG + tig0016220:369284-369303 None:intergenic 30.0%
AACCCTAGATTTCAAAATCT+AGG - tig0016220:369344-369363 Msa1358220:three_prime_UTR 30.0%
ACCCTAGATTTCAAAATCTA+GGG - tig0016220:369345-369364 Msa1358220:three_prime_UTR 30.0%
!!! ACCCTAGATTTTGAAATCTA+GGG + tig0016220:369349-369368 None:intergenic 30.0%
!!! AACCCTAGATTTTGAAATCT+AGG + tig0016220:369350-369369 None:intergenic 30.0%
AAACTCAAAATGGGATAAGA+GGG + tig0016220:369412-369431 None:intergenic 30.0%
AAAACTCAAAATGGGATAAG+AGG + tig0016220:369413-369432 None:intergenic 30.0%
GAAGAGAGAAAACTCAAAAT+GGG + tig0016220:369421-369440 None:intergenic 30.0%
TGAAGAGAGAAAACTCAAAA+TGG + tig0016220:369422-369441 None:intergenic 30.0%
! ATTCAATATCTAGAGCTACT+AGG - tig0016220:369472-369491 Msa1358220:three_prime_UTR 30.0%
! TTCAATATCTAGAGCTACTA+GGG - tig0016220:369473-369492 Msa1358220:three_prime_UTR 30.0%
AATGCAGAGAAAACAGAAAA+GGG + tig0016220:369507-369526 None:intergenic 30.0%
AAATGCAGAGAAAACAGAAA+AGG + tig0016220:369508-369527 None:intergenic 30.0%
! TTTCTGTTTTCTCTGCATTT+TGG - tig0016220:369508-369527 Msa1358220:three_prime_UTR 30.0%
! AAAAAGTTGGGTTTTTGAAC+TGG - tig0016220:369608-369627 Msa1358220:exon 30.0%
!!! AAGCTATGTCATTTTCTGAT+GGG - tig0016220:369698-369717 Msa1358220:CDS 30.0%
!! GGTTTGTGTTTTTATATGGA+TGG - tig0016220:370056-370075 Msa1358220:intron 30.0%
!!! ATTTGGCTTGTTCATTTTAG+AGG - tig0016220:370122-370141 Msa1358220:intron 30.0%
!!! TTTGGCTTGTTCATTTTAGA+GGG - tig0016220:370123-370142 Msa1358220:intron 30.0%
TATAAAACACAACAATGGCA+AGG + tig0016220:370462-370481 None:intergenic 30.0%
! GCCATTGTTGTGTTTTATAT+TGG - tig0016220:370463-370482 Msa1358220:CDS 30.0%
GCCAATATAAAACACAACAA+TGG + tig0016220:370467-370486 None:intergenic 30.0%
!! AACTAGTCTTATACATGTCT+GGG + tig0016220:370600-370619 None:intergenic 30.0%
!! AAACTAGTCTTATACATGTC+TGG + tig0016220:370601-370620 None:intergenic 30.0%
TTATCTATGTATAACTGCCT+CGG + tig0016220:370626-370645 None:intergenic 30.0%
ATCAGAAACCATGATAGATA+TGG + tig0016220:370649-370668 None:intergenic 30.0%
!! GTTTTTGTTTATCCCTTCTA+AGG - tig0016220:370719-370738 Msa1358220:intron 30.0%
ATTGTATTCTTCCATTTCGT+CGG - tig0016220:370812-370831 Msa1358220:intron 30.0%
ATCTGAATACAATGATGTTG+AGG - tig0016220:370885-370904 Msa1358220:CDS 30.0%
! TGTATTGAAACAGAGGATTT+TGG - tig0016220:370913-370932 Msa1358220:CDS 30.0%
AAGTCATAATGTAGCAACTT+TGG + tig0016220:371050-371069 None:intergenic 30.0%
!!! ATGGCAATAGAGAGATTTTT+TGG - tig0016220:371116-371135 Msa1358220:intron 30.0%
!!! CAATAGAGAGATTTTTTGGA+GGG - tig0016220:371120-371139 Msa1358220:intron 30.0%
ATCTTATCAAACTATCCATG+AGG + tig0016220:371161-371180 None:intergenic 30.0%
CTTAACCAATAATGATGTTG+AGG - tig0016220:371217-371236 Msa1358220:intron 30.0%
TAACCAATAATGATGTTGAG+GGG - tig0016220:371219-371238 Msa1358220:intron 30.0%
AAACATAAAATGCCTTGTAG+TGG + tig0016220:371657-371676 None:intergenic 30.0%
TAAAGAAAAGGGACGTTTAA+TGG - tig0016220:371778-371797 Msa1358220:intron 30.0%
ATTAAGAATATACCTGGACA+GGG + tig0016220:372125-372144 None:intergenic 30.0%
AATTAAGAATATACCTGGAC+AGG + tig0016220:372126-372145 None:intergenic 30.0%
!!! TCTCAATGGTTTTGTAACAA+TGG - tig0016220:372150-372169 Msa1358220:intron 30.0%
TTGAGGTTATCTAATAGCAT+GGG + tig0016220:372477-372496 None:intergenic 30.0%
! TTTGAGGTTATCTAATAGCA+TGG + tig0016220:372478-372497 None:intergenic 30.0%
CCTATATCATTATTGACCAT+GGG + tig0016220:372519-372538 None:intergenic 30.0%
TATAGGCAATTGTACATCTT+AGG - tig0016220:372533-372552 Msa1358220:CDS 30.0%
!! ACCAAAGTCTCATTTGTTTT+GGG + tig0016220:372582-372601 None:intergenic 30.0%
! AACCAAAGTCTCATTTGTTT+TGG + tig0016220:372583-372602 None:intergenic 30.0%
!!! GTTTCTTGTTTTGTTGTCTT+TGG + tig0016220:372649-372668 None:intergenic 30.0%
!!! GAAGCTGTATAGTTTTGATT+AGG + tig0016220:372742-372761 None:intergenic 30.0%
AATCAAAACTATACAGCTTC+TGG - tig0016220:372742-372761 Msa1358220:CDS 30.0%
!! ACTGGTATTGATTTGATGAA+CGG - tig0016220:372823-372842 Msa1358220:five_prime_UTR 30.0%
TGAAACTCTAGGTAAAATAG+AGG - tig0016220:373038-373057 Msa1358220:five_prime_UTR 30.0%
AACCTAAAGTCAAATAGAAC+CGG + tig0016220:373064-373083 None:intergenic 30.0%
CAAACTAGTCAGCTTATTAA+TGG - tig0016220:373106-373125 Msa1358220:five_prime_UTR 30.0%
TCAGCTTATTAATGGAAGTT+TGG - tig0016220:373114-373133 Msa1358220:five_prime_UTR 30.0%
CTTATTAATGGAAGTTTGGT+AGG - tig0016220:373118-373137 Msa1358220:five_prime_UTR 30.0%
GATGGGAAAAGAAAAGAGTT+TGG + tig0016220:369290-369309 None:intergenic 35.0%
GTGCAGAGTGTAATAATGAT+GGG + tig0016220:369307-369326 None:intergenic 35.0%
AGTGCAGAGTGTAATAATGA+TGG + tig0016220:369308-369327 None:intergenic 35.0%
ATGCAGAGAAAACAGAAAAG+GGG + tig0016220:369506-369525 None:intergenic 35.0%
!!! GAAGCTATGTCATTTTCTGA+TGG - tig0016220:369697-369716 Msa1358220:CDS 35.0%
!!! ATGTCATTTTCTGATGGGTT+TGG - tig0016220:369703-369722 Msa1358220:CDS 35.0%
!!! CAACATGGTAGTTTTAGTCA+TGG - tig0016220:369835-369854 Msa1358220:intron 35.0%
CTGTCTGTGAAAAAGAAAAG+AGG - tig0016220:369883-369902 Msa1358220:intron 35.0%
AAAAGAAAAGAGGAAGACCT+AGG - tig0016220:369893-369912 Msa1358220:intron 35.0%
ATACTTTGGACCTCAAGAAT+TGG - tig0016220:370202-370221 Msa1358220:intron 35.0%
TTAGCAAGTGAACAACATCA+AGG + tig0016220:370229-370248 None:intergenic 35.0%
AAAGTCACTGTCTACCTAAA+GGG + tig0016220:370295-370314 None:intergenic 35.0%
AAAAGTCACTGTCTACCTAA+AGG + tig0016220:370296-370315 None:intergenic 35.0%
! TAGGTAGACAGTGACTTTTA+AGG - tig0016220:370297-370316 Msa1358220:intron 35.0%
GGAACAAAAATAGTTGCAAC+TGG + tig0016220:370441-370460 None:intergenic 35.0%
!! TAATTTGGTGTCTCTTGACT+TGG - tig0016220:370508-370527 Msa1358220:intron 35.0%
!! GTATAAGACTAGTTTAACCG+AGG - tig0016220:370606-370625 Msa1358220:intron 35.0%
!! TTTATCCCTTCTAAGGTGAA+TGG - tig0016220:370726-370745 Msa1358220:intron 35.0%
TTCATCCATTCACCTTAGAA+GGG + tig0016220:370734-370753 None:intergenic 35.0%
AATTACCTCTTGAGCTTCAA+TGG + tig0016220:370795-370814 None:intergenic 35.0%
TTGGTATCATTAGACCTATG+GGG + tig0016220:370980-370999 None:intergenic 35.0%
GTTGGTATCATTAGACCTAT+GGG + tig0016220:370981-371000 None:intergenic 35.0%
TGTTGGTATCATTAGACCTA+TGG + tig0016220:370982-371001 None:intergenic 35.0%
AAAAAAGCCTAAGAGTCGTA+TGG - tig0016220:371097-371116 Msa1358220:intron 35.0%
!!! GCAATAGAGAGATTTTTTGG+AGG - tig0016220:371119-371138 Msa1358220:intron 35.0%
TAACCCCTCAACATCATTAT+TGG + tig0016220:371225-371244 None:intergenic 35.0%
AACTTTGAGTACAAGCTTGA+AGG + tig0016220:371448-371467 None:intergenic 35.0%
TGTACTCAAAGTTCCTTGAA+TGG - tig0016220:371455-371474 Msa1358220:intron 35.0%
GTCATTAATTTCTGTCATCG+CGG - tig0016220:371807-371826 Msa1358220:intron 35.0%
GCTTCATATGAACAAACCTT+AGG + tig0016220:371920-371939 None:intergenic 35.0%
!! ATGCTTATCTGGTTCTTTCT+TGG - tig0016220:371990-372009 Msa1358220:intron 35.0%
! TAGTGTTTCCCTTTCTAGTA+CGG - tig0016220:372053-372072 Msa1358220:intron 35.0%
TTAAGTCAAAACACTTACGG+TGG - tig0016220:372229-372248 Msa1358220:intron 35.0%
CCCATGGTCAATAATGATAT+AGG - tig0016220:372516-372535 Msa1358220:CDS 35.0%
GCCTATATCATTATTGACCA+TGG + tig0016220:372520-372539 None:intergenic 35.0%
!!! TCTCATTTGTTTTGGGGAAA+AGG + tig0016220:372575-372594 None:intergenic 35.0%
!!! CCAAAGTCTCATTTGTTTTG+GGG + tig0016220:372581-372600 None:intergenic 35.0%
!!! GCTGTATAGTTTTGATTAGG+TGG + tig0016220:372739-372758 None:intergenic 35.0%
ATCAAATCAATACCAGTGTG+TGG + tig0016220:372820-372839 None:intergenic 35.0%
!! CTGGTATTGATTTGATGAAC+GGG - tig0016220:372824-372843 Msa1358220:five_prime_UTR 35.0%
! TGATTCGTTTGTTACAGCAT+AGG + tig0016220:372979-372998 None:intergenic 35.0%
GTGCAAAGAAATGAAACTCT+AGG - tig0016220:373027-373046 Msa1358220:five_prime_UTR 35.0%
GTTTGGTAGGAAATAGAGAA+TGG - tig0016220:373131-373150 Msa1358220:five_prime_UTR 35.0%
AATCATAGCTGGAACGCATT+TGG + tig0016220:369380-369399 None:intergenic 40.0%
!! TTAGACAAAGCTCTAAACCC+AGG + tig0016220:369772-369791 None:intergenic 40.0%
! AGAGCTTTGTCTAATCCTCA+TGG - tig0016220:369778-369797 Msa1358220:CDS 40.0%
!! TTTTCAGCAGAGCATCAACA+TGG - tig0016220:369820-369839 Msa1358220:CDS 40.0%
CTCAAAGAAACAGGTACATC+AGG + tig0016220:369928-369947 None:intergenic 40.0%
GGAGAAAGTCTCAAAGAAAC+AGG + tig0016220:369937-369956 None:intergenic 40.0%
GAATTAGCAGTAGCAGACAT+AGG + tig0016220:369958-369977 None:intergenic 40.0%
TGCTAATTCCACTCCTGATT+CGG - tig0016220:369969-369988 Msa1358220:intron 40.0%
ACATCAAGGACCAATTCTTG+AGG + tig0016220:370215-370234 None:intergenic 40.0%
! GCTAATAGATTGGTCCCTTT+AGG - tig0016220:370278-370297 Msa1358220:intron 40.0%
GTTCATCCATTCACCTTAGA+AGG + tig0016220:370735-370754 None:intergenic 40.0%
GCTTCAATGGTGATAACATG+AGG + tig0016220:370782-370801 None:intergenic 40.0%
TATCACCATTGAAGCTCAAG+AGG - tig0016220:370787-370806 Msa1358220:intron 40.0%
GGCTGTATGTATTGAAACAG+AGG - tig0016220:370906-370925 Msa1358220:CDS 40.0%
GTCGATGTCAACAATGATGT+TGG + tig0016220:370999-371018 None:intergenic 40.0%
TCATTGTTGACATCGACGTA+AGG - tig0016220:371002-371021 Msa1358220:intron 40.0%
TCTATTGCCATACGACTCTT+AGG + tig0016220:371107-371126 None:intergenic 40.0%
ATGCAAGTGGAAATTGCTGA+AGG - tig0016220:371244-371263 Msa1358220:intron 40.0%
TTATGCATCTTGTCAGGAAC+TGG - tig0016220:371545-371564 Msa1358220:intron 40.0%
TATGCATCTTGTCAGGAACT+GGG - tig0016220:371546-371565 Msa1358220:intron 40.0%
CTCATATGTAACACTGACAC+TGG + tig0016220:371609-371628 None:intergenic 40.0%
CAGTGTCAGTGTTACATATG+AGG - tig0016220:371607-371626 Msa1358220:intron 40.0%
TGAGGTTAGAGAACTAACAC+CGG - tig0016220:371625-371644 Msa1358220:intron 40.0%
CATAAAATGCCTTGTAGTGG+AGG + tig0016220:371654-371673 None:intergenic 40.0%
AGTTAGTACTGCTTAGCCTA+AGG - tig0016220:371901-371920 Msa1358220:intron 40.0%
TCTTTCTTGGTTGCTGAAGA+TGG - tig0016220:372003-372022 Msa1358220:intron 40.0%
ATGACCATCCGTACTAGAAA+GGG + tig0016220:372064-372083 None:intergenic 40.0%
AGTACGGATGGTCATGTTAT+CGG - tig0016220:372069-372088 Msa1358220:intron 40.0%
TTATTGACCATGGGCCTATT+TGG + tig0016220:372510-372529 None:intergenic 40.0%
CCCCAAAACAAATGAGACTT+TGG - tig0016220:372578-372597 Msa1358220:CDS 40.0%
! GTAGTTTGCAGCTTTGTGTA+CGG - tig0016220:372613-372632 Msa1358220:CDS 40.0%
! GCTAATTTGTCACTACTCTG+AGG + tig0016220:372700-372719 None:intergenic 40.0%
! AGTGACAAATTAGCTTCTCC+AGG - tig0016220:372706-372725 Msa1358220:CDS 40.0%
!! AACTATACAGCTTCTGGAAC+AGG - tig0016220:372748-372767 Msa1358220:CDS 40.0%
! AAAAGTACACAACCACACAC+TGG - tig0016220:372805-372824 Msa1358220:five_prime_UTR 40.0%
GAACGGGTGAAAGTTTATTC+AGG - tig0016220:372840-372859 Msa1358220:five_prime_UTR 40.0%
ACTCTAGGTAAAATAGAGGC+CGG - tig0016220:373042-373061 Msa1358220:five_prime_UTR 40.0%
TAGAGAATGGCTCTTTGATG+AGG - tig0016220:373144-373163 Msa1358220:five_prime_UTR 40.0%
GGTAGTTCAGGAATCATAGC+TGG + tig0016220:369391-369410 None:intergenic 45.0%
ATGGGATAAGAGGGTAGTTC+AGG + tig0016220:369403-369422 None:intergenic 45.0%
TGTTTCAACAACCACCTCCT+GGG - tig0016220:369752-369771 Msa1358220:CDS 45.0%
GCTTTGTCTAATCCTCATGG+TGG - tig0016220:369781-369800 Msa1358220:CDS 45.0%
!! AATCCTCATGGTGGTTCTGA+TGG - tig0016220:369790-369809 Msa1358220:CDS 45.0%
GTGCCGTAGTTCCTTATTCA+GGG - tig0016220:369857-369876 Msa1358220:intron 45.0%
TGCCGTAGTTCCTTATTCAG+GGG - tig0016220:369858-369877 Msa1358220:intron 45.0%
CTCCCCTGAATAAGGAACTA+CGG + tig0016220:369863-369882 None:intergenic 45.0%
AGAGGAAGACCTAGGAAGTA+TGG - tig0016220:369901-369920 Msa1358220:intron 45.0%
ACATCAGGACCATACTTCCT+AGG + tig0016220:369913-369932 None:intergenic 45.0%
AGGACGAAAGCAACACAAGT+AGG - tig0016220:370317-370336 Msa1358220:intron 45.0%
GAATGGATGAACAGTTCAGC+TGG - tig0016220:370743-370762 Msa1358220:intron 45.0%
TTCCATTTCGTCGGACGTAT+AGG - tig0016220:370821-370840 Msa1358220:intron 45.0%
AACCTATACGTCCGACGAAA+TGG + tig0016220:370826-370845 None:intergenic 45.0%
ATGTTGAGGGGTTATGCAAG+TGG - tig0016220:371231-371250 Msa1358220:intron 45.0%
TTCTTGGTTGCTGAAGATGG+TGG - tig0016220:372006-372025 Msa1358220:intron 45.0%
ATGCCACCAGTTCTATTGTG+AGG + tig0016220:372033-372052 None:intergenic 45.0%
! GTTTCCCTTTCTAGTACGGA+TGG - tig0016220:372057-372076 Msa1358220:intron 45.0%
CATGACCATCCGTACTAGAA+AGG + tig0016220:372065-372084 None:intergenic 45.0%
AAAACACTTACGGTGGCGAT+TGG - tig0016220:372236-372255 Msa1358220:intron 45.0%
ACTGTTTCCCTAAGCTATCC+TGG - tig0016220:372398-372417 Msa1358220:intron 45.0%
AAGCTCTCCAGGATAGCTTA+GGG + tig0016220:372408-372427 None:intergenic 45.0%
TATCCTGGAGAGCTTGTGAT+TGG - tig0016220:372413-372432 Msa1358220:CDS 45.0%
TTTCCAATCACAAGCTCTCC+AGG + tig0016220:372419-372438 None:intergenic 45.0%
AACCAATCCAAATAGGCCCA+TGG - tig0016220:372500-372519 Msa1358220:CDS 45.0%
AATGAGACTTTGGTTGCTGC+AGG - tig0016220:372588-372607 Msa1358220:CDS 45.0%
CGGGTGAAAGTTTATTCAGG+AGG - tig0016220:372843-372862 Msa1358220:five_prime_UTR 45.0%
! GGCCGGTTCTATTTGACTTT+AGG - tig0016220:373059-373078 Msa1358220:five_prime_UTR 45.0%
!! AATTAAAAAAATATATACTT+TGG - tig0016220:370188-370207 Msa1358220:intron 5.0%
!! TATGATTTAAAAATATAATA+TGG + tig0016220:370954-370973 None:intergenic 5.0%
GTGTTTCAACAACCACCTCC+TGG - tig0016220:369751-369770 Msa1358220:CDS 50.0%
!! AAAGCTCTAAACCCAGGAGG+TGG + tig0016220:369766-369785 None:intergenic 50.0%
!! GACAAAGCTCTAAACCCAGG+AGG + tig0016220:369769-369788 None:intergenic 50.0%
GAACCATCAGAACCACCATG+AGG + tig0016220:369796-369815 None:intergenic 50.0%
! GGTGCCGTAGTTCCTTATTC+AGG - tig0016220:369856-369875 Msa1358220:intron 50.0%
ACAGACAGCTCCCCTGAATA+AGG + tig0016220:369871-369890 None:intergenic 50.0%
!! CCACTCCTGATTCGGAGAAA+CGG - tig0016220:369977-369996 Msa1358220:intron 50.0%
! TGTTGCTTCCTTCCACTTCC+CGG + tig0016220:370018-370037 None:intergenic 50.0%
AAGCAACAGCTAGCTGCTCT+AGG - tig0016220:370030-370049 Msa1358220:intron 50.0%
! ACAGCTAGCTGCTCTAGGTA+TGG - tig0016220:370035-370054 Msa1358220:intron 50.0%
GATGAACAGTTCAGCTGGAC+AGG - tig0016220:370748-370767 Msa1358220:intron 50.0%
AAAAACGTGCGCAAGCCTCA+TGG - tig0016220:371143-371162 Msa1358220:intron 50.0%
GACAAGATGCATAAAGCGCG+TGG + tig0016220:371539-371558 None:intergenic 50.0%
CGCGCTTTATGCATCTTGTC+AGG - tig0016220:371539-371558 Msa1358220:intron 50.0%
ACACTGACACTGGTAGAAGC+AGG + tig0016220:371599-371618 None:intergenic 50.0%
GGTGGACCTCACAATAGAAC+TGG - tig0016220:372024-372043 Msa1358220:intron 50.0%
GGACCTCACAATAGAACTGG+TGG - tig0016220:372027-372046 Msa1358220:intron 50.0%
ACGGATGGTCATGTTATCGG+TGG - tig0016220:372072-372091 Msa1358220:intron 50.0%
GATGGTCATGTTATCGGTGG+TGG - tig0016220:372075-372094 Msa1358220:intron 50.0%
!! TTATCGGTGGTGGTGTTGCT+AGG - tig0016220:372085-372104 Msa1358220:intron 50.0%
CAAGCTCTCCAGGATAGCTT+AGG + tig0016220:372409-372428 None:intergenic 50.0%
GACCATGGGCCTATTTGGAT+TGG + tig0016220:372505-372524 None:intergenic 50.0%
! GTTTGCAGCTTTGTGTACGG+TGG - tig0016220:372616-372635 Msa1358220:CDS 50.0%
TGATTAGGTGGCTCACTTCC+TGG + tig0016220:372727-372746 None:intergenic 50.0%
!! CTTCTGGAACAGGCACAATG+TGG - tig0016220:372758-372777 Msa1358220:exon 50.0%
GCACAATGTGGCATGGATCA+AGG - tig0016220:372770-372789 Msa1358220:exon 50.0%
CCGTTTCTCCGAATCAGGAG+TGG + tig0016220:369980-369999 None:intergenic 55.0%
TGACACTGGTAGAAGCAGGC+TGG + tig0016220:371595-371614 None:intergenic 55.0%
! TGCCTTGTAGTGGAGGTAGC+CGG + tig0016220:371647-371666 None:intergenic 55.0%
TATTGCTGCAAGCCCTGTCC+AGG - tig0016220:372110-372129 Msa1358220:intron 55.0%
ACTTACGGTGGCGATTGGCA+TGG - tig0016220:372241-372260 Msa1358220:intron 55.0%
GAGACTTTGGTTGCTGCAGG+TGG - tig0016220:372591-372610 Msa1358220:CDS 55.0%
GGAACAGGCACAATGTGGCA+TGG - tig0016220:372763-372782 Msa1358220:exon 55.0%
CTCGGCCGTTTCTCCGAATC+AGG + tig0016220:369985-370004 None:intergenic 60.0%
GATTCGGAGAAACGGCCGAG+AGG - tig0016220:369985-370004 Msa1358220:intron 60.0%
TGCTTCCTTCCACTTCCCGG+TGG + tig0016220:370015-370034 None:intergenic 60.0%
! CACCGGCTACCTCCACTACA+AGG - tig0016220:371642-371661 Msa1358220:intron 60.0%
CGGAGAAACGGCCGAGAGGA+CGG - tig0016220:369989-370008 Msa1358220:intron 65.0%
CTTCCCGGTGGCCGTCCTCT+CGG + tig0016220:370003-370022 None:intergenic 70.0%
AGAGGACGGCCACCGGGAAG+TGG - tig0016220:370003-370022 Msa1358220:intron 70.0%
GACGGCCACCGGGAAGTGGA+AGG - tig0016220:370007-370026 Msa1358220:intron 70.0%
ACGGCCGAGAGGACGGCCAC+CGG - tig0016220:369996-370015 Msa1358220:intron 75.0%
! CGGCCGAGAGGACGGCCACC+GGG - tig0016220:369997-370016 Msa1358220:intron 80.0%
Chromosome Type Strat End Strand Name
tig0016220 gene 369255 373205 369255 ID=Msa1358220;Name=Msa1358220
tig0016220 mRNA 369255 373205 369255 ID=Msa1358220-mRNA-1;Parent=Msa1358220;Name=Msa1358220-mRNA-1;_AED=0.01;_eAED=0.01;_QI=430|1|1|1|1|1|5|356|321
tig0016220 exon 369255 369850 369255 ID=Msa1358220-mRNA-1:exon:10697;Parent=Msa1358220-mRNA-1
tig0016220 exon 370329 370487 370329 ID=Msa1358220-mRNA-1:exon:10696;Parent=Msa1358220-mRNA-1
tig0016220 exon 370832 370963 370832 ID=Msa1358220-mRNA-1:exon:10695;Parent=Msa1358220-mRNA-1
tig0016220 exon 371652 371719 371652 ID=Msa1358220-mRNA-1:exon:10694;Parent=Msa1358220-mRNA-1
tig0016220 exon 372409 373205 372409 ID=Msa1358220-mRNA-1:exon:10693;Parent=Msa1358220-mRNA-1
tig0016220 five_prime_UTR 372776 373205 372776 ID=Msa1358220-mRNA-1:five_prime_utr;Parent=Msa1358220-mRNA-1
tig0016220 CDS 372409 372775 372409 ID=Msa1358220-mRNA-1:cds;Parent=Msa1358220-mRNA-1
tig0016220 CDS 371652 371719 371652 ID=Msa1358220-mRNA-1:cds;Parent=Msa1358220-mRNA-1
tig0016220 CDS 370832 370963 370832 ID=Msa1358220-mRNA-1:cds;Parent=Msa1358220-mRNA-1
tig0016220 CDS 370329 370487 370329 ID=Msa1358220-mRNA-1:cds;Parent=Msa1358220-mRNA-1
tig0016220 CDS 369611 369850 369611 ID=Msa1358220-mRNA-1:cds;Parent=Msa1358220-mRNA-1
tig0016220 three_prime_UTR 369255 369610 369255 ID=Msa1358220-mRNA-1:three_prime_utr;Parent=Msa1358220-mRNA-1
Gene Sequence

>Msa1358220

ATGGATGAGAGAGAAGCTATGTCATTTTCTGATGGGTTTGGTTCATATTACATGCATAGAGAAAGAGTGTTTCAACAACCACCTCCTGGGTTTAGAGCTTTGTCTAATCCTCATGGTGGTTCTGATGGTTCTGCATTTTCAGCAGAGCATCAACATGGTAGTTTTAGTCATGGTGCCGTAGTTCCTTATTCAGGGGAGCTGTCTGTGAAAAAGAAAAGAGGAAGACCTAGGAAGTATGGTCCTGATGTACCTGTTTCTTTGAGACTTTCTCCTATGTCTGCTACTGCTAATTCCACTCCTGATTCGGAGAAACGGCCGAGAGGACGGCCACCGGGAAGTGGAAGGAAGCAACAGCTAGCTGCTCTAGGTGAATGGATGAACAGTTCAGCTGGACAGGCTTTTTCACCTCATGTTATCACCATTGAAGCTCAAGAGGACATTGTAGCAAAGTTATTGTCATTTTCACAACATAGACCACGCGCTTTATGCATCTTGTCAGGAACTGGGACTGTATCTTCAGTCACTCTGCGCCAGCCTGCTTCTACCAGTGTCAGTGTTACATATGAGGGTCGATTCCAAATATTATGCTTATCTGGTTCTTTCTTGGTTGCTGAAGATGGTGGACCTCACAATAGAACTGGTGGCATTAGTGTTTCCCTTTCTAGTACGGATGGTCATGTTATCGGTGGTGGTGTTGCTAGGCTTATTGCTGCAAGCCCTGTCCAGGTGGTAGTTTGCAGCTTTGTGTACGGTGGTTCTAAGCCAAAGACAACAAAACAAGAAACTGCTGCAAAAGAAGATGATGATTCTGAGCCTCAGAGTAGTGACAAATTAGCTTCTCCAGGAAGTGAGCCACCTAATCAAAACTATACAGCTTCTGGAACAGGCACAATGTGGCATGGATCAAGGACAGTAGACGTGAAAAGTACACAACCACACACTGGTATTGATTTGATGAACGGGTGA
Protein sequence

>Msa1358220

MDEREAMSFSDGFGSYYMHRERVFQQPPPGFRALSNPHGGSDGSAFSAEHQHGSFSHGAVVPYSGELSVKKKRGRPRKYGPDVPVSLRLSPMSATANSTPDSEKRPRGRPPGSGRKQQLAALGEWMNSSAGQAFSPHVITIEAQEDIVAKLLSFSQHRPRALCILSGTGTVSSVTLRQPASTSVSVTYEGRFQILCLSGSFLVAEDGGPHNRTGGISVSLSSTDGHVIGGGVARLIAASPVQVVVCSFVYGGSKPKTTKQETAAKEDDDSEPQSSDKLASPGSEPPNQNYTASGTGTMWHGSRTVDVKSTQPHTGIDLMNG*