AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0689230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0689230 MtrunA17_Chr5g0397551 95.327 321 15 0 1 321 1 321 0.0 627
Msa0689230 MtrunA17_Chr8g0386741 64.306 353 92 8 1 321 1 351 1.27e-129 373
Msa0689230 MtrunA17_Chr8g0349091 48.649 259 124 5 69 321 88 343 6.61e-68 216
Msa0689230 MtrunA17_Chr7g0247431 43.220 354 160 13 1 321 1 346 1.07e-61 199
Msa0689230 MtrunA17_Chr4g0054661 50.521 192 76 6 70 249 73 257 1.70e-48 165
Msa0689230 MtrunA17_Chr7g0245841 45.575 226 114 4 68 289 58 278 1.37e-46 160
Msa0689230 MtrunA17_Chr1g0179461 44.286 210 103 3 66 261 65 274 4.39e-46 160
Msa0689230 MtrunA17_Chr8g0351761 41.923 260 132 5 68 312 69 324 3.14e-44 154
Msa0689230 MtrunA17_Chr4g0056761 49.519 208 92 6 70 264 72 279 1.59e-40 144
Msa0689230 MtrunA17_Chr1g0188211 45.370 216 94 7 59 251 37 251 3.47e-39 141
Msa0689230 MtrunA17_Chr5g0398621 40.670 209 106 3 46 249 22 217 3.66e-38 135
Msa0689230 MtrunA17_Chr6g0476061 37.234 282 138 9 1 264 1 261 2.64e-31 119
Msa0689230 MtrunA17_Chr7g0274821 37.647 255 131 8 69 317 73 305 3.48e-29 115
Msa0689230 MtrunA17_Chr4g0027371 46.923 130 65 3 123 248 8 137 6.95e-28 108
Msa0689230 MtrunA17_Chr4g0027331 46.565 131 66 3 123 249 8 138 2.09e-27 104
Msa0689230 MtrunA17_Chr1g0190011 38.596 228 107 11 70 285 43 249 3.54e-27 108
Msa0689230 MtrunA17_Chr4g0027351 47.154 123 61 3 123 243 8 128 1.46e-25 99.8
Msa0689230 MtrunA17_Chr1g0165101 37.037 216 107 6 59 252 74 282 3.03e-25 103
Msa0689230 MtrunA17_Chr3g0133051 35.542 166 102 3 85 248 55 217 8.65e-24 98.6
Msa0689230 MtrunA17_Chr5g0443311 37.427 171 98 4 81 251 32 193 3.90e-21 90.9
Msa0689230 MtrunA17_Chr5g0398531 38.323 167 89 4 104 269 100 253 1.19e-20 90.9
Msa0689230 MtrunA17_Chr5g0427311 40.476 126 70 4 126 248 72 195 3.34e-20 87.8
Msa0689230 MtrunA17_Chr8g0351651 40.411 146 80 3 104 248 86 225 6.64e-20 88.2
Msa0689230 MtrunA17_Chr5g0417581 38.333 120 71 3 125 242 10 128 2.59e-19 84.3
Msa0689230 MtrunA17_Chr1g0168121 38.776 147 83 4 103 248 41 181 3.90e-19 85.5
Msa0689230 MtrunA17_Chr6g0476241 33.981 206 111 7 70 270 120 305 3.47e-17 80.5
Msa0689230 MtrunA17_Chr4g0027301 39.516 124 71 3 124 243 16 139 4.25e-17 77.0
Msa0689230 MtrunA17_Chr1g0190051 35.593 177 101 5 96 271 66 230 1.38e-16 79.0
Msa0689230 MtrunA17_Chr3g0112131 40.678 118 66 3 132 248 104 218 2.43e-14 72.4
Msa0689230 MtrunA17_Chr7g0250031 46.970 66 35 0 137 202 87 152 3.95e-14 71.2
Msa0689230 MtrunA17_Chr4g0054651 38.261 115 63 2 137 248 106 215 5.10e-14 71.2
Msa0689230 MtrunA17_Chr3g0094471 29.412 170 90 4 104 248 55 219 1.08e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0689230 AT1G63470.1 48.958 384 127 13 1 321 1 378 3.65e-94 284
Msa0689230 AT1G63480.2 47.059 340 125 11 1 294 1 331 5.02e-81 250
Msa0689230 AT1G63480.1 47.059 340 125 11 1 294 1 331 5.02e-81 250
Msa0689230 AT1G63480.5 46.407 334 124 11 7 294 1 325 1.48e-77 241
Msa0689230 AT1G63480.7 46.407 334 124 11 7 294 1 325 1.48e-77 241
Msa0689230 AT1G63480.4 46.407 334 124 11 7 294 1 325 1.48e-77 241
Msa0689230 AT1G63480.3 46.407 334 124 11 7 294 1 325 1.48e-77 241
Msa0689230 AT1G63480.6 46.407 334 124 11 7 294 1 325 1.48e-77 241
Msa0689230 AT2G45850.1 43.296 358 156 11 1 321 1 348 1.70e-72 228
Msa0689230 AT2G45850.2 43.296 358 156 11 1 321 1 348 1.70e-72 228
Msa0689230 AT3G61310.1 41.667 360 165 9 1 321 1 354 3.73e-67 214
Msa0689230 AT2G45850.3 46.403 278 118 5 1 248 1 277 2.15e-61 197
Msa0689230 AT4G12080.1 49.074 216 86 5 69 261 88 302 2.70e-56 186
Msa0689230 AT2G33620.1 52.261 199 82 5 64 254 91 284 7.34e-54 180
Msa0689230 AT2G33620.4 52.261 199 82 5 64 254 91 284 7.34e-54 180
Msa0689230 AT2G33620.2 52.261 199 82 5 64 254 91 284 7.34e-54 180
Msa0689230 AT2G33620.3 52.261 199 82 5 64 254 91 284 7.34e-54 180
Msa0689230 AT4G17950.1 43.154 241 94 7 69 275 130 361 3.05e-46 162
Msa0689230 AT4G25320.1 35.842 279 131 5 69 308 85 354 9.04e-45 157
Msa0689230 AT4G22770.2 45.175 228 99 7 69 281 71 287 1.03e-43 153
Msa0689230 AT4G22770.1 45.175 228 99 7 69 281 71 287 1.03e-43 153
Msa0689230 AT5G46640.1 45.089 224 98 5 66 269 98 316 1.61e-43 154
Msa0689230 AT4G00200.2 47.573 206 82 4 59 249 45 239 1.50e-39 142
Msa0689230 AT4G00200.1 47.573 206 82 4 59 249 45 239 1.50e-39 142
Msa0689230 AT5G62260.1 40.000 215 104 4 58 249 64 276 2.13e-38 140
Msa0689230 AT5G62260.3 40.000 215 104 4 58 249 64 276 2.13e-38 140
Msa0689230 AT5G51590.1 39.091 220 97 4 69 251 77 296 1.43e-37 139
Msa0689230 AT5G62260.2 38.605 215 107 4 58 249 64 276 2.07e-36 132
Msa0689230 AT3G04590.1 37.615 218 113 6 41 248 79 283 6.49e-35 129
Msa0689230 AT3G04590.2 37.615 218 113 6 41 248 79 283 1.30e-34 130
Msa0689230 AT3G60870.1 34.906 212 101 8 46 248 13 196 6.98e-23 96.3
Msa0689230 AT1G76500.1 38.065 155 80 4 104 248 72 220 2.47e-20 89.7
Msa0689230 AT5G49700.1 33.140 172 92 6 92 248 39 202 3.82e-19 85.9
Msa0689230 AT4G14465.1 42.000 100 55 1 103 202 66 162 4.61e-18 83.2
Msa0689230 AT2G45430.1 34.066 182 102 5 104 280 89 257 1.03e-17 82.8
Msa0689230 AT2G36560.1 37.190 121 73 3 131 248 102 222 7.05e-17 81.6
Msa0689230 AT4G12050.1 40.136 147 80 4 104 248 118 258 7.22e-17 80.5
Msa0689230 AT3G04570.1 35.294 153 86 3 104 248 80 227 1.30e-16 79.3
Msa0689230 AT1G14490.2 34.132 167 96 5 87 248 11 168 1.78e-16 77.8
Msa0689230 AT2G35270.1 34.459 148 86 3 104 248 78 217 2.38e-16 78.2
Msa0689230 AT4G22810.1 38.926 149 81 4 104 248 105 247 2.77e-16 78.6
Msa0689230 AT1G14490.1 34.899 149 87 4 105 248 6 149 3.81e-16 76.3
Msa0689230 AT2G42940.1 38.655 119 68 2 86 202 33 148 2.27e-15 75.1
Msa0689230 AT5G28590.1 35.484 155 69 5 128 281 24 148 9.62e-14 69.7
Msa0689230 AT1G20900.1 36.129 155 83 4 104 248 86 234 1.05e-13 70.9
Msa0689230 AT3G55560.1 40.351 114 65 3 137 249 118 229 2.56e-12 67.0
Msa0689230 AT4G17800.1 40.909 66 39 0 137 202 112 177 6.82e-12 65.5
Msa0689230 AT4G35390.1 35.811 148 86 4 104 248 63 204 4.55e-11 63.2

Find 112 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACTAGTCAGCTTATTAA+TGG 0.189729 4_4:-56207248 Msa0689230:three_prime_UTR
ATGCTTATCTGGTTCTTTCT+TGG 0.208399 4_4:-56208364 Msa0689230:CDS
TGAAGAGAGAAAACTCAAAA+TGG 0.252221 4_4:+56210935 None:intergenic
AACCAGATAAGCATAATATT+TGG 0.258954 4_4:+56208373 None:intergenic
GGTGCCGTAGTTCCTTATTC+AGG 0.267238 4_4:-56210498 Msa0689230:CDS
TTCCAAATATTATGCTTATC+TGG 0.278941 4_4:-56208375 Msa0689230:CDS
AATCAAAACTATACAGCTTC+TGG 0.279195 4_4:-56207612 Msa0689230:CDS
TGATTAGGTGGCTCACTTCC+TGG 0.283204 4_4:+56207630 None:intergenic
TGTTGCTTCCTTCCACTTCC+CGG 0.301637 4_4:+56210339 None:intergenic
GGCCGGTTCTATTTGACTTT+AGG 0.307914 4_4:-56207295 Msa0689230:three_prime_UTR
CTCGGCCGTTTCTCCGAATC+AGG 0.320939 4_4:+56210372 None:intergenic
AACCCTAGATTTCAAAATCT+AGG 0.341061 4_4:-56211010 Msa0689230:five_prime_UTR
TCTTTCTTGGTTGCTGAAGA+TGG 0.344581 4_4:-56208351 Msa0689230:CDS
TTATGCATCTTGTCAGGAAC+TGG 0.345983 4_4:-56208809 Msa0689230:CDS
ACAGACAGCTCCCCTGAATA+AGG 0.360120 4_4:+56210486 None:intergenic
TCAGCTTATTAATGGAAGTT+TGG 0.364139 4_4:-56207240 Msa0689230:three_prime_UTR
GATGGGAAAAGAATAGAGTT+TGG 0.366174 4_4:+56211067 None:intergenic
GAACGGGTGAAAGTTTATTC+AGG 0.376058 4_4:-56207514 Msa0689230:exon
ATGGGATAAGAGGGTAGTTC+AGG 0.377740 4_4:+56210954 None:intergenic
AATTACCTCTTGAGCTTCAA+TGG 0.384245 4_4:+56209562 None:intergenic
AACTATACAGCTTCTGGAAC+AGG 0.388590 4_4:-56207606 Msa0689230:CDS
TTTATCCCTTCTAAGGTGAA+TGG 0.390199 4_4:-56209628 Msa0689230:intron
AATCATAGCTGGAACGCATT+TGG 0.390721 4_4:+56210977 None:intergenic
AAAACTCAAAATGGGATAAG+AGG 0.394158 4_4:+56210944 None:intergenic
TGCTAATTCCACTCCTGATT+CGG 0.413237 4_4:-56210385 Msa0689230:CDS
ATTCAATATCTAGAGCTACT+AGG 0.420750 4_4:-56210882 Msa0689230:five_prime_UTR
AATGCAGAGAAAACAGAAAA+GGG 0.430304 4_4:+56210850 None:intergenic
AGTACGGATGGTCATGTTAT+CGG 0.434375 4_4:-56208285 Msa0689230:CDS
AAATGCAGAGAAAACAGAAA+AGG 0.437943 4_4:+56210849 None:intergenic
AGAGGAAGACCTAGGAAGTA+TGG 0.440247 4_4:-56210453 Msa0689230:CDS
CTTATTAATGGAAGTTTGGT+AGG 0.440811 4_4:-56207236 Msa0689230:three_prime_UTR
GGAGAAAGTCTCAAAGAAAC+AGG 0.441189 4_4:+56210420 None:intergenic
TAGTGTTTCCCTTTCTAGTA+CGG 0.442988 4_4:-56208301 Msa0689230:CDS
AGAGGACGGCCACCGGGAAG+TGG 0.446219 4_4:-56210351 Msa0689230:CDS
GATGAACAGTTCAGCTGGAC+AGG 0.447850 4_4:-56209606 Msa0689230:CDS
CTCAAAGAAACAGGTACATC+AGG 0.448430 4_4:+56210429 None:intergenic
GTGCCGTAGTTCCTTATTCA+GGG 0.450813 4_4:-56210497 Msa0689230:CDS
ACGGCCGAGAGGACGGCCAC+CGG 0.451090 4_4:-56210358 Msa0689230:CDS
ACCCTAGATTTCAAAATCTA+GGG 0.451823 4_4:-56211009 Msa0689230:five_prime_UTR
CGCGCTTTATGCATCTTGTC+AGG 0.452328 4_4:-56208815 Msa0689230:CDS
GTGTTTCAACAACCACCTCC+TGG 0.454565 4_4:-56210603 Msa0689230:CDS
AACCTAAAGTCAAATAGAAC+CGG 0.458889 4_4:+56207293 None:intergenic
AAAAGAATAGAGTTTGGTTG+TGG 0.459763 4_4:+56211073 None:intergenic
CGGCCGAGAGGACGGCCACC+GGG 0.469316 4_4:-56210357 Msa0689230:CDS
AATTAAGAATATACCTGGAC+AGG 0.469513 4_4:+56208231 None:intergenic
AATCCTCATGGTGGTTCTGA+TGG 0.470012 4_4:-56210564 Msa0689230:CDS
GAAGAGAGAAAACTCAAAAT+GGG 0.473523 4_4:+56210936 None:intergenic
AGTGCAGAGTGTAATAATGA+TGG 0.475460 4_4:+56211049 None:intergenic
CATGACCATCCGTACTAGAA+AGG 0.475896 4_4:+56208292 None:intergenic
TATTGCTGCAAGCCCTGTCC+AGG 0.478697 4_4:-56208244 Msa0689230:intron
TTCAATATCTAGAGCTACTA+GGG 0.479360 4_4:-56210881 Msa0689230:five_prime_UTR
CTGGTATTGATTTGATGAAC+GGG 0.480347 4_4:-56207530 Msa0689230:CDS
ATGACCATCCGTACTAGAAA+GGG 0.483763 4_4:+56208293 None:intergenic
TTATCGGTGGTGGTGTTGCT+AGG 0.492524 4_4:-56208269 Msa0689230:CDS
CAGTGTCAGTGTTACATATG+AGG 0.494038 4_4:-56208747 Msa0689230:intron
AGAGCTTTGTCTAATCCTCA+TGG 0.497003 4_4:-56210576 Msa0689230:CDS
GGTGGACCTCACAATAGAAC+TGG 0.506766 4_4:-56208330 Msa0689230:CDS
GAATGGATGAACAGTTCAGC+TGG 0.511176 4_4:-56209611 Msa0689230:CDS
CTTCCCGGTGGCCGTCCTCT+CGG 0.520916 4_4:+56210354 None:intergenic
TGAAACTCTAGGTAAAATAG+AGG 0.527313 4_4:-56207316 Msa0689230:three_prime_UTR
GGTAGTTCAGGAATCATAGC+TGG 0.531965 4_4:+56210966 None:intergenic
CCACTCCTGATTCGGAGAAA+CGG 0.532902 4_4:-56210377 Msa0689230:CDS
AGTGACAAATTAGCTTCTCC+AGG 0.534618 4_4:-56207648 Msa0689230:CDS
GTTTCCCTTTCTAGTACGGA+TGG 0.539742 4_4:-56208297 Msa0689230:CDS
GTGCAAAGAAATGAAACTCT+AGG 0.541757 4_4:-56207327 Msa0689230:three_prime_UTR
ACATCAGGACCATACTTCCT+AGG 0.542327 4_4:+56210444 None:intergenic
TGATTCGTTTGTTACAGCAT+AGG 0.543040 4_4:+56207378 None:intergenic
AAGCAACAGCTAGCTGCTCT+AGG 0.543103 4_4:-56210324 Msa0689230:intron
CGGAGAAACGGCCGAGAGGA+CGG 0.543303 4_4:-56210365 Msa0689230:CDS
GCACAATGTGGCATGGATCA+AGG 0.545853 4_4:-56207584 Msa0689230:CDS
TTCTTGGTTGCTGAAGATGG+TGG 0.546001 4_4:-56208348 Msa0689230:CDS
GACGGCCACCGGGAAGTGGA+AGG 0.550895 4_4:-56210347 Msa0689230:CDS
TATGCATCTTGTCAGGAACT+GGG 0.554881 4_4:-56208808 Msa0689230:CDS
GTAGTTTGCAGCTTTGTGTA+CGG 0.556100 4_4:-56207741 Msa0689230:CDS
TGTTTCAACAACCACCTCCT+GGG 0.564423 4_4:-56210602 Msa0689230:CDS
GTTTGGTAGGAAATAGAGAA+TGG 0.564956 4_4:-56207223 Msa0689230:three_prime_UTR
CTCATATGTAACACTGACAC+TGG 0.565778 4_4:+56208748 None:intergenic
GAATTAGCAGTAGCAGACAT+AGG 0.567416 4_4:+56210399 None:intergenic
CTCCCCTGAATAAGGAACTA+CGG 0.572244 4_4:+56210494 None:intergenic
GTGCAGAGTGTAATAATGAT+GGG 0.575446 4_4:+56211050 None:intergenic
AAACTCAAAATGGGATAAGA+GGG 0.580219 4_4:+56210945 None:intergenic
ACTCTAGGTAAAATAGAGGC+CGG 0.582374 4_4:-56207312 Msa0689230:three_prime_UTR
TATCACCATTGAAGCTCAAG+AGG 0.586931 4_4:-56209567 Msa0689230:intron
ACACTGACACTGGTAGAAGC+AGG 0.587023 4_4:+56208758 None:intergenic
GATGGTCATGTTATCGGTGG+TGG 0.597066 4_4:-56208279 Msa0689230:CDS
AAAAGAAAAGAGGAAGACCT+AGG 0.598976 4_4:-56210461 Msa0689230:CDS
CCGTTTCTCCGAATCAGGAG+TGG 0.602529 4_4:+56210377 None:intergenic
TGACACTGGTAGAAGCAGGC+TGG 0.603686 4_4:+56208762 None:intergenic
AAAGCTCTAAACCCAGGAGG+TGG 0.606520 4_4:+56210591 None:intergenic
GGAACAGGCACAATGTGGCA+TGG 0.608270 4_4:-56207591 Msa0689230:CDS
CGGGTGAAAGTTTATTCAGG+AGG 0.610764 4_4:-56207511 Msa0689230:exon
TGCCGTAGTTCCTTATTCAG+GGG 0.617863 4_4:-56210496 Msa0689230:CDS
TAGAGAATGGCTCTTTGATG+AGG 0.620948 4_4:-56207210 Msa0689230:three_prime_UTR
GTTTGCAGCTTTGTGTACGG+TGG 0.633716 4_4:-56207738 Msa0689230:CDS
GCTTTGTCTAATCCTCATGG+TGG 0.633942 4_4:-56210573 Msa0689230:CDS
ACTGGTATTGATTTGATGAA+CGG 0.640757 4_4:-56207531 Msa0689230:CDS
ATTAAGAATATACCTGGACA+GGG 0.640852 4_4:+56208232 None:intergenic
ATGCAGAGAAAACAGAAAAG+GGG 0.641114 4_4:+56210851 None:intergenic
GGACCTCACAATAGAACTGG+TGG 0.645571 4_4:-56208327 Msa0689230:CDS
GACAAGATGCATAAAGCGCG+TGG 0.650446 4_4:+56208818 None:intergenic
ACGGATGGTCATGTTATCGG+TGG 0.655178 4_4:-56208282 Msa0689230:CDS
ATCAAATCAATACCAGTGTG+TGG 0.655711 4_4:+56207537 None:intergenic
TGCTTCCTTCCACTTCCCGG+TGG 0.663805 4_4:+56210342 None:intergenic
AAAAGTACACAACCACACAC+TGG 0.665666 4_4:-56207549 Msa0689230:CDS
TTAGACAAAGCTCTAAACCC+AGG 0.670436 4_4:+56210585 None:intergenic
ATGCCACCAGTTCTATTGTG+AGG 0.672283 4_4:+56208324 None:intergenic
GCTAATTTGTCACTACTCTG+AGG 0.677251 4_4:+56207657 None:intergenic
GATTCGGAGAAACGGCCGAG+AGG 0.704001 4_4:-56210369 Msa0689230:CDS
CTTCTGGAACAGGCACAATG+TGG 0.706254 4_4:-56207596 Msa0689230:CDS
GACAAAGCTCTAAACCCAGG+AGG 0.733182 4_4:+56210588 None:intergenic
GCTTCAATGGTGATAACATG+AGG 0.739912 4_4:+56209575 None:intergenic
GAACCATCAGAACCACCATG+AGG 0.742787 4_4:+56210561 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAAATTATAACTATTTAA+GGG + chr4_4:56209632-56209651 None:intergenic 10.0%
!! AACTAAATTATAACTATTTA+AGG + chr4_4:56209633-56209652 None:intergenic 10.0%
!! AACTTTAGTAAAAAAAAAGT+TGG - chr4_4:56207511-56207530 Msa0689230:exon 15.0%
!! ACTTTAGTAAAAAAAAAGTT+GGG - chr4_4:56207512-56207531 Msa0689230:exon 15.0%
!! AAAAATATAATATGGAAAGT+CGG + chr4_4:56208862-56208881 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTTTGCAG+TGG - chr4_4:56209792-56209811 Msa0689230:intron 15.0%
!! TTGATTGTATGTATTGTTTA+AGG - chr4_4:56208002-56208021 Msa0689230:intron 20.0%
!! AATTACTGAATAATAACACT+TGG + chr4_4:56208409-56208428 None:intergenic 20.0%
!!! AGTGTTATTATTCAGTAATT+TGG - chr4_4:56208409-56208428 Msa0689230:intron 20.0%
!! ACAACTAAATATAAACAAAG+TGG + chr4_4:56208770-56208789 None:intergenic 20.0%
!! ATTTAAGGGATTTAGTAAAA+GGG + chr4_4:56209618-56209637 None:intergenic 20.0%
!! TATTTAAGGGATTTAGTAAA+AGG + chr4_4:56209619-56209638 None:intergenic 20.0%
!! AGTTATGACTATTAAAGAAA+AGG - chr4_4:56209682-56209701 Msa0689230:intron 20.0%
!! GTTATGACTATTAAAGAAAA+GGG - chr4_4:56209683-56209702 Msa0689230:intron 20.0%
!!! TTTTATTTTTCATGTTTTGC+AGG - chr4_4:56209867-56209886 Msa0689230:intron 20.0%
!!! TTTATTTTTCATGTTTTGCA+GGG - chr4_4:56209868-56209887 Msa0689230:intron 20.0%
!!! TTAAGTTGTTTATCTAAACA+GGG + chr4_4:56210184-56210203 None:intergenic 20.0%
!!! ATTAAGTTGTTTATCTAAAC+AGG + chr4_4:56210185-56210204 None:intergenic 20.0%
!! ACTGTATTTATATAAGCTAT+AGG - chr4_4:56210288-56210307 Msa0689230:intron 20.0%
!!! TTTCATACTTTTTTGTCATC+TGG - chr4_4:56207472-56207491 Msa0689230:three_prime_UTR 25.0%
!!! TTCATACTTTTTTGTCATCT+GGG - chr4_4:56207473-56207492 Msa0689230:three_prime_UTR 25.0%
!! TTTTAGTGTTAGTTAATGCA+TGG - chr4_4:56207582-56207601 Msa0689230:CDS 25.0%
!!! GTATGGTTTGTGTTTTTATA+TGG - chr4_4:56207968-56207987 Msa0689230:intron 25.0%
! GTATGTATTGTTTAAGGATT+TGG - chr4_4:56208008-56208027 Msa0689230:intron 25.0%
! AAGGATTTGGATTTGTAATT+TGG - chr4_4:56208021-56208040 Msa0689230:intron 25.0%
!!! TTATCAACTTGCTAATAGAT+TGG - chr4_4:56208184-56208203 Msa0689230:intron 25.0%
!! AAGTATAAAGCATCTAGAAA+TGG + chr4_4:56208292-56208311 None:intergenic 25.0%
! GATAAAAGCAAAAGAAAAGA+AGG + chr4_4:56208335-56208354 None:intergenic 25.0%
!! ATTGTTGTGTTTTATATTGG+CGG - chr4_4:56208382-56208401 Msa0689230:CDS 25.0%
! GTCAAAAATGACTAAATTGA+TGG - chr4_4:56208470-56208489 Msa0689230:intron 25.0%
!! ATGACTAAATTGATGGTAAT+TGG - chr4_4:56208477-56208496 Msa0689230:intron 25.0%
! ATAGATAACCATATCTATCA+TGG - chr4_4:56208554-56208573 Msa0689230:intron 25.0%
! TTTAAATCATAATACCCCAT+AGG - chr4_4:56208879-56208898 Msa0689230:intron 25.0%
! TTAACCAATAATGATGTTGA+GGG - chr4_4:56209134-56209153 Msa0689230:intron 25.0%
! CAAAAGAAAATATCCATTCA+AGG + chr4_4:56209387-56209406 None:intergenic 25.0%
!!! TGGATATTTTCTTTTGTTTC+AGG - chr4_4:56209391-56209410 Msa0689230:intron 25.0%
! TTCCAAATATTATGCTTATC+TGG - chr4_4:56209895-56209914 Msa0689230:intron 25.0%
! AACCAGATAAGCATAATATT+TGG + chr4_4:56209900-56209919 None:intergenic 25.0%
! ATTGCAATTAAGAATATACC+TGG + chr4_4:56210047-56210066 None:intergenic 25.0%
! ATTCTTAATTGCAATCTCAA+TGG - chr4_4:56210052-56210071 Msa0689230:intron 25.0%
! ACATTAAGTCAAAACACTTA+CGG - chr4_4:56210142-56210161 Msa0689230:intron 25.0%
!!! TATTTGGATTGGTTTATTTG+AGG + chr4_4:56210410-56210429 None:intergenic 25.0%
! TCAAATAAACCAATCCAAAT+AGG - chr4_4:56210409-56210428 Msa0689230:CDS 25.0%
!! TGTAACAAACGAATCATTTT+AGG - chr4_4:56210899-56210918 Msa0689230:five_prime_UTR 25.0%
!! GTAACAAACGAATCATTTTA+GGG - chr4_4:56210900-56210919 Msa0689230:five_prime_UTR 25.0%
AAAAGAATAGAGTTTGGTTG+TGG + chr4_4:56207200-56207219 None:intergenic 30.0%
AACCCTAGATTTCAAAATCT+AGG - chr4_4:56207260-56207279 Msa0689230:three_prime_UTR 30.0%
ACCCTAGATTTCAAAATCTA+GGG - chr4_4:56207261-56207280 Msa0689230:three_prime_UTR 30.0%
!!! ACCCTAGATTTTGAAATCTA+GGG + chr4_4:56207265-56207284 None:intergenic 30.0%
!!! AACCCTAGATTTTGAAATCT+AGG + chr4_4:56207266-56207285 None:intergenic 30.0%
AAACTCAAAATGGGATAAGA+GGG + chr4_4:56207328-56207347 None:intergenic 30.0%
AAAACTCAAAATGGGATAAG+AGG + chr4_4:56207329-56207348 None:intergenic 30.0%
GAAGAGAGAAAACTCAAAAT+GGG + chr4_4:56207337-56207356 None:intergenic 30.0%
TGAAGAGAGAAAACTCAAAA+TGG + chr4_4:56207338-56207357 None:intergenic 30.0%
! ATTCAATATCTAGAGCTACT+AGG - chr4_4:56207388-56207407 Msa0689230:three_prime_UTR 30.0%
! TTCAATATCTAGAGCTACTA+GGG - chr4_4:56207389-56207408 Msa0689230:three_prime_UTR 30.0%
AATGCAGAGAAAACAGAAAA+GGG + chr4_4:56207423-56207442 None:intergenic 30.0%
AAATGCAGAGAAAACAGAAA+AGG + chr4_4:56207424-56207443 None:intergenic 30.0%
! TTTCTGTTTTCTCTGCATTT+TGG - chr4_4:56207424-56207443 Msa0689230:three_prime_UTR 30.0%
! AAAAAGTTGGGTTTTTGAAC+TGG - chr4_4:56207524-56207543 Msa0689230:exon 30.0%
!!! AAGCTATGTCATTTTCTGAT+GGG - chr4_4:56207614-56207633 Msa0689230:CDS 30.0%
!! GGTTTGTGTTTTTATATGGA+TGG - chr4_4:56207972-56207991 Msa0689230:intron 30.0%
!!! ATTTGGCTTGTTCATTTTAG+AGG - chr4_4:56208038-56208057 Msa0689230:intron 30.0%
!!! TTTGGCTTGTTCATTTTAGA+GGG - chr4_4:56208039-56208058 Msa0689230:intron 30.0%
TATAAAACACAACAATGGCA+AGG + chr4_4:56208378-56208397 None:intergenic 30.0%
! GCCATTGTTGTGTTTTATAT+TGG - chr4_4:56208379-56208398 Msa0689230:CDS 30.0%
GCCAATATAAAACACAACAA+TGG + chr4_4:56208383-56208402 None:intergenic 30.0%
!! AACTAGTCTTATACATGTCT+GGG + chr4_4:56208516-56208535 None:intergenic 30.0%
!! AAACTAGTCTTATACATGTC+TGG + chr4_4:56208517-56208536 None:intergenic 30.0%
TTATCTATGTATAACTGCCT+CGG + chr4_4:56208542-56208561 None:intergenic 30.0%
ATCAGAAACCATGATAGATA+TGG + chr4_4:56208565-56208584 None:intergenic 30.0%
!! GTTTTTGTTTATCCCTTCTA+AGG - chr4_4:56208635-56208654 Msa0689230:intron 30.0%
ATTGTATTCTTCCATTTCGT+CGG - chr4_4:56208728-56208747 Msa0689230:intron 30.0%
ATCTGAATACAATGATGTTG+AGG - chr4_4:56208801-56208820 Msa0689230:CDS 30.0%
! TGTATTGAAACAGAGGATTT+TGG - chr4_4:56208829-56208848 Msa0689230:CDS 30.0%
AAGTCATAATGTAGCAACTT+TGG + chr4_4:56208966-56208985 None:intergenic 30.0%
!!! ATGGCAATAGAGAGATTTTT+TGG - chr4_4:56209032-56209051 Msa0689230:intron 30.0%
!!! CAATAGAGAGATTTTTTGGA+GGG - chr4_4:56209036-56209055 Msa0689230:intron 30.0%
ATCTTATCAAACTATCCATG+AGG + chr4_4:56209077-56209096 None:intergenic 30.0%
CTTAACCAATAATGATGTTG+AGG - chr4_4:56209133-56209152 Msa0689230:intron 30.0%
TAACCAATAATGATGTTGAG+GGG - chr4_4:56209135-56209154 Msa0689230:intron 30.0%
AAACATAAAATGCCTTGTAG+TGG + chr4_4:56209573-56209592 None:intergenic 30.0%
TAAAGAAAAGGGACGTTTAA+TGG - chr4_4:56209694-56209713 Msa0689230:intron 30.0%
ATTAAGAATATACCTGGACA+GGG + chr4_4:56210041-56210060 None:intergenic 30.0%
AATTAAGAATATACCTGGAC+AGG + chr4_4:56210042-56210061 None:intergenic 30.0%
!!! TCTCAATGGTTTTGTAACAA+TGG - chr4_4:56210066-56210085 Msa0689230:intron 30.0%
TTGAGGTTATCTAATAGCAT+GGG + chr4_4:56210393-56210412 None:intergenic 30.0%
! TTTGAGGTTATCTAATAGCA+TGG + chr4_4:56210394-56210413 None:intergenic 30.0%
CCTATATCATTATTGACCAT+GGG + chr4_4:56210435-56210454 None:intergenic 30.0%
TATAGGCAATTGTACATCTT+AGG - chr4_4:56210449-56210468 Msa0689230:CDS 30.0%
!! ACCAAAGTCTCATTTGTTTT+GGG + chr4_4:56210498-56210517 None:intergenic 30.0%
! AACCAAAGTCTCATTTGTTT+TGG + chr4_4:56210499-56210518 None:intergenic 30.0%
!!! GTTTCTTGTTTTGTTGTCTT+TGG + chr4_4:56210565-56210584 None:intergenic 30.0%
!!! GAAGCTGTATAGTTTTGATT+AGG + chr4_4:56210658-56210677 None:intergenic 30.0%
AATCAAAACTATACAGCTTC+TGG - chr4_4:56210658-56210677 Msa0689230:CDS 30.0%
!! ACTGGTATTGATTTGATGAA+CGG - chr4_4:56210739-56210758 Msa0689230:five_prime_UTR 30.0%
TGAAACTCTAGGTAAAATAG+AGG - chr4_4:56210954-56210973 Msa0689230:five_prime_UTR 30.0%
AACCTAAAGTCAAATAGAAC+CGG + chr4_4:56210980-56210999 None:intergenic 30.0%
CAAACTAGTCAGCTTATTAA+TGG - chr4_4:56211022-56211041 Msa0689230:five_prime_UTR 30.0%
TCAGCTTATTAATGGAAGTT+TGG - chr4_4:56211030-56211049 Msa0689230:five_prime_UTR 30.0%
CTTATTAATGGAAGTTTGGT+AGG - chr4_4:56211034-56211053 Msa0689230:five_prime_UTR 30.0%
GATGGGAAAAGAATAGAGTT+TGG + chr4_4:56207206-56207225 None:intergenic 35.0%
GTGCAGAGTGTAATAATGAT+GGG + chr4_4:56207223-56207242 None:intergenic 35.0%
AGTGCAGAGTGTAATAATGA+TGG + chr4_4:56207224-56207243 None:intergenic 35.0%
ATGCAGAGAAAACAGAAAAG+GGG + chr4_4:56207422-56207441 None:intergenic 35.0%
!!! GAAGCTATGTCATTTTCTGA+TGG - chr4_4:56207613-56207632 Msa0689230:CDS 35.0%
!!! ATGTCATTTTCTGATGGGTT+TGG - chr4_4:56207619-56207638 Msa0689230:CDS 35.0%
!!! CAACATGGTAGTTTTAGTCA+TGG - chr4_4:56207751-56207770 Msa0689230:intron 35.0%
CTGTCTGTGAAAAAGAAAAG+AGG - chr4_4:56207799-56207818 Msa0689230:intron 35.0%
AAAAGAAAAGAGGAAGACCT+AGG - chr4_4:56207809-56207828 Msa0689230:intron 35.0%
ATACTTTGGACCTCAAGAAT+TGG - chr4_4:56208118-56208137 Msa0689230:intron 35.0%
TTAGCAAGTGAACAACATCA+AGG + chr4_4:56208145-56208164 None:intergenic 35.0%
AAAGTCACTGTCTACCTAAA+GGG + chr4_4:56208211-56208230 None:intergenic 35.0%
AAAAGTCACTGTCTACCTAA+AGG + chr4_4:56208212-56208231 None:intergenic 35.0%
! TAGGTAGACAGTGACTTTTA+AGG - chr4_4:56208213-56208232 Msa0689230:intron 35.0%
GGAACAAAAATAGTTGCAAC+TGG + chr4_4:56208357-56208376 None:intergenic 35.0%
!! TAATTTGGTGTCTCTTGACT+TGG - chr4_4:56208424-56208443 Msa0689230:intron 35.0%
!! GTATAAGACTAGTTTAACCG+AGG - chr4_4:56208522-56208541 Msa0689230:intron 35.0%
!! TTTATCCCTTCTAAGGTGAA+TGG - chr4_4:56208642-56208661 Msa0689230:intron 35.0%
TTCATCCATTCACCTTAGAA+GGG + chr4_4:56208650-56208669 None:intergenic 35.0%
AATTACCTCTTGAGCTTCAA+TGG + chr4_4:56208711-56208730 None:intergenic 35.0%
TTGGTATCATTAGACCTATG+GGG + chr4_4:56208896-56208915 None:intergenic 35.0%
GTTGGTATCATTAGACCTAT+GGG + chr4_4:56208897-56208916 None:intergenic 35.0%
TGTTGGTATCATTAGACCTA+TGG + chr4_4:56208898-56208917 None:intergenic 35.0%
AAAAAAGCCTAAGAGTCGTA+TGG - chr4_4:56209013-56209032 Msa0689230:intron 35.0%
!!! GCAATAGAGAGATTTTTTGG+AGG - chr4_4:56209035-56209054 Msa0689230:intron 35.0%
TAACCCCTCAACATCATTAT+TGG + chr4_4:56209141-56209160 None:intergenic 35.0%
AACTTTGAGTACAAGCTTGA+AGG + chr4_4:56209364-56209383 None:intergenic 35.0%
TGTACTCAAAGTTCCTTGAA+TGG - chr4_4:56209371-56209390 Msa0689230:intron 35.0%
GTCATTAATTTCTGTCATCG+CGG - chr4_4:56209723-56209742 Msa0689230:intron 35.0%
GCTTCATATGAACAAACCTT+AGG + chr4_4:56209836-56209855 None:intergenic 35.0%
!! ATGCTTATCTGGTTCTTTCT+TGG - chr4_4:56209906-56209925 Msa0689230:intron 35.0%
! TAGTGTTTCCCTTTCTAGTA+CGG - chr4_4:56209969-56209988 Msa0689230:intron 35.0%
TTAAGTCAAAACACTTACGG+TGG - chr4_4:56210145-56210164 Msa0689230:intron 35.0%
CCCATGGTCAATAATGATAT+AGG - chr4_4:56210432-56210451 Msa0689230:CDS 35.0%
GCCTATATCATTATTGACCA+TGG + chr4_4:56210436-56210455 None:intergenic 35.0%
!!! TCTCATTTGTTTTGGGGAAA+AGG + chr4_4:56210491-56210510 None:intergenic 35.0%
!!! CCAAAGTCTCATTTGTTTTG+GGG + chr4_4:56210497-56210516 None:intergenic 35.0%
!!! GCTGTATAGTTTTGATTAGG+TGG + chr4_4:56210655-56210674 None:intergenic 35.0%
ATCAAATCAATACCAGTGTG+TGG + chr4_4:56210736-56210755 None:intergenic 35.0%
!! CTGGTATTGATTTGATGAAC+GGG - chr4_4:56210740-56210759 Msa0689230:five_prime_UTR 35.0%
! TGATTCGTTTGTTACAGCAT+AGG + chr4_4:56210895-56210914 None:intergenic 35.0%
GTGCAAAGAAATGAAACTCT+AGG - chr4_4:56210943-56210962 Msa0689230:five_prime_UTR 35.0%
GTTTGGTAGGAAATAGAGAA+TGG - chr4_4:56211047-56211066 Msa0689230:five_prime_UTR 35.0%
AATCATAGCTGGAACGCATT+TGG + chr4_4:56207296-56207315 None:intergenic 40.0%
!! TTAGACAAAGCTCTAAACCC+AGG + chr4_4:56207688-56207707 None:intergenic 40.0%
! AGAGCTTTGTCTAATCCTCA+TGG - chr4_4:56207694-56207713 Msa0689230:CDS 40.0%
!! TTTTCAGCAGAGCATCAACA+TGG - chr4_4:56207736-56207755 Msa0689230:CDS 40.0%
CTCAAAGAAACAGGTACATC+AGG + chr4_4:56207844-56207863 None:intergenic 40.0%
GGAGAAAGTCTCAAAGAAAC+AGG + chr4_4:56207853-56207872 None:intergenic 40.0%
GAATTAGCAGTAGCAGACAT+AGG + chr4_4:56207874-56207893 None:intergenic 40.0%
TGCTAATTCCACTCCTGATT+CGG - chr4_4:56207885-56207904 Msa0689230:intron 40.0%
ACATCAAGGACCAATTCTTG+AGG + chr4_4:56208131-56208150 None:intergenic 40.0%
! GCTAATAGATTGGTCCCTTT+AGG - chr4_4:56208194-56208213 Msa0689230:intron 40.0%
GTTCATCCATTCACCTTAGA+AGG + chr4_4:56208651-56208670 None:intergenic 40.0%
GCTTCAATGGTGATAACATG+AGG + chr4_4:56208698-56208717 None:intergenic 40.0%
TATCACCATTGAAGCTCAAG+AGG - chr4_4:56208703-56208722 Msa0689230:intron 40.0%
GGCTGTATGTATTGAAACAG+AGG - chr4_4:56208822-56208841 Msa0689230:CDS 40.0%
GTCGATGTCAACAATGATGT+TGG + chr4_4:56208915-56208934 None:intergenic 40.0%
TCATTGTTGACATCGACGTA+AGG - chr4_4:56208918-56208937 Msa0689230:intron 40.0%
TCTATTGCCATACGACTCTT+AGG + chr4_4:56209023-56209042 None:intergenic 40.0%
ATGCAAGTGGAAATTGCTGA+AGG - chr4_4:56209160-56209179 Msa0689230:intron 40.0%
TTATGCATCTTGTCAGGAAC+TGG - chr4_4:56209461-56209480 Msa0689230:intron 40.0%
TATGCATCTTGTCAGGAACT+GGG - chr4_4:56209462-56209481 Msa0689230:intron 40.0%
CTCATATGTAACACTGACAC+TGG + chr4_4:56209525-56209544 None:intergenic 40.0%
CAGTGTCAGTGTTACATATG+AGG - chr4_4:56209523-56209542 Msa0689230:intron 40.0%
TGAGGTTAGAGAACTAACAC+CGG - chr4_4:56209541-56209560 Msa0689230:intron 40.0%
CATAAAATGCCTTGTAGTGG+AGG + chr4_4:56209570-56209589 None:intergenic 40.0%
AGTTAGTACTGCTTAGCCTA+AGG - chr4_4:56209817-56209836 Msa0689230:intron 40.0%
TCTTTCTTGGTTGCTGAAGA+TGG - chr4_4:56209919-56209938 Msa0689230:intron 40.0%
ATGACCATCCGTACTAGAAA+GGG + chr4_4:56209980-56209999 None:intergenic 40.0%
AGTACGGATGGTCATGTTAT+CGG - chr4_4:56209985-56210004 Msa0689230:intron 40.0%
TTATTGACCATGGGCCTATT+TGG + chr4_4:56210426-56210445 None:intergenic 40.0%
CCCCAAAACAAATGAGACTT+TGG - chr4_4:56210494-56210513 Msa0689230:CDS 40.0%
! GTAGTTTGCAGCTTTGTGTA+CGG - chr4_4:56210529-56210548 Msa0689230:CDS 40.0%
! GCTAATTTGTCACTACTCTG+AGG + chr4_4:56210616-56210635 None:intergenic 40.0%
! AGTGACAAATTAGCTTCTCC+AGG - chr4_4:56210622-56210641 Msa0689230:CDS 40.0%
!! AACTATACAGCTTCTGGAAC+AGG - chr4_4:56210664-56210683 Msa0689230:CDS 40.0%
! AAAAGTACACAACCACACAC+TGG - chr4_4:56210721-56210740 Msa0689230:five_prime_UTR 40.0%
GAACGGGTGAAAGTTTATTC+AGG - chr4_4:56210756-56210775 Msa0689230:five_prime_UTR 40.0%
ACTCTAGGTAAAATAGAGGC+CGG - chr4_4:56210958-56210977 Msa0689230:five_prime_UTR 40.0%
TAGAGAATGGCTCTTTGATG+AGG - chr4_4:56211060-56211079 Msa0689230:five_prime_UTR 40.0%
GGTAGTTCAGGAATCATAGC+TGG + chr4_4:56207307-56207326 None:intergenic 45.0%
ATGGGATAAGAGGGTAGTTC+AGG + chr4_4:56207319-56207338 None:intergenic 45.0%
TGTTTCAACAACCACCTCCT+GGG - chr4_4:56207668-56207687 Msa0689230:CDS 45.0%
GCTTTGTCTAATCCTCATGG+TGG - chr4_4:56207697-56207716 Msa0689230:CDS 45.0%
!! AATCCTCATGGTGGTTCTGA+TGG - chr4_4:56207706-56207725 Msa0689230:CDS 45.0%
GTGCCGTAGTTCCTTATTCA+GGG - chr4_4:56207773-56207792 Msa0689230:intron 45.0%
TGCCGTAGTTCCTTATTCAG+GGG - chr4_4:56207774-56207793 Msa0689230:intron 45.0%
CTCCCCTGAATAAGGAACTA+CGG + chr4_4:56207779-56207798 None:intergenic 45.0%
AGAGGAAGACCTAGGAAGTA+TGG - chr4_4:56207817-56207836 Msa0689230:intron 45.0%
ACATCAGGACCATACTTCCT+AGG + chr4_4:56207829-56207848 None:intergenic 45.0%
AGGACGAAAGCAACACAAGT+AGG - chr4_4:56208233-56208252 Msa0689230:intron 45.0%
GAATGGATGAACAGTTCAGC+TGG - chr4_4:56208659-56208678 Msa0689230:intron 45.0%
TTCCATTTCGTCGGACGTAT+AGG - chr4_4:56208737-56208756 Msa0689230:intron 45.0%
AACCTATACGTCCGACGAAA+TGG + chr4_4:56208742-56208761 None:intergenic 45.0%
ATGTTGAGGGGTTATGCAAG+TGG - chr4_4:56209147-56209166 Msa0689230:intron 45.0%
TTCTTGGTTGCTGAAGATGG+TGG - chr4_4:56209922-56209941 Msa0689230:intron 45.0%
ATGCCACCAGTTCTATTGTG+AGG + chr4_4:56209949-56209968 None:intergenic 45.0%
! GTTTCCCTTTCTAGTACGGA+TGG - chr4_4:56209973-56209992 Msa0689230:intron 45.0%
CATGACCATCCGTACTAGAA+AGG + chr4_4:56209981-56210000 None:intergenic 45.0%
AAAACACTTACGGTGGCGAT+TGG - chr4_4:56210152-56210171 Msa0689230:intron 45.0%
ACTGTTTCCCTAAGCTATCC+TGG - chr4_4:56210314-56210333 Msa0689230:intron 45.0%
AAGCTCTCCAGGATAGCTTA+GGG + chr4_4:56210324-56210343 None:intergenic 45.0%
TATCCTGGAGAGCTTGTGAT+TGG - chr4_4:56210329-56210348 Msa0689230:CDS 45.0%
TTTCCAATCACAAGCTCTCC+AGG + chr4_4:56210335-56210354 None:intergenic 45.0%
AACCAATCCAAATAGGCCCA+TGG - chr4_4:56210416-56210435 Msa0689230:CDS 45.0%
AATGAGACTTTGGTTGCTGC+AGG - chr4_4:56210504-56210523 Msa0689230:CDS 45.0%
CGGGTGAAAGTTTATTCAGG+AGG - chr4_4:56210759-56210778 Msa0689230:five_prime_UTR 45.0%
! GGCCGGTTCTATTTGACTTT+AGG - chr4_4:56210975-56210994 Msa0689230:five_prime_UTR 45.0%
!! AATTAAAAAAATATATACTT+TGG - chr4_4:56208104-56208123 Msa0689230:intron 5.0%
!! TATGATTTAAAAATATAATA+TGG + chr4_4:56208870-56208889 None:intergenic 5.0%
GTGTTTCAACAACCACCTCC+TGG - chr4_4:56207667-56207686 Msa0689230:CDS 50.0%
!! AAAGCTCTAAACCCAGGAGG+TGG + chr4_4:56207682-56207701 None:intergenic 50.0%
!! GACAAAGCTCTAAACCCAGG+AGG + chr4_4:56207685-56207704 None:intergenic 50.0%
GAACCATCAGAACCACCATG+AGG + chr4_4:56207712-56207731 None:intergenic 50.0%
! GGTGCCGTAGTTCCTTATTC+AGG - chr4_4:56207772-56207791 Msa0689230:intron 50.0%
ACAGACAGCTCCCCTGAATA+AGG + chr4_4:56207787-56207806 None:intergenic 50.0%
!! CCACTCCTGATTCGGAGAAA+CGG - chr4_4:56207893-56207912 Msa0689230:intron 50.0%
! TGTTGCTTCCTTCCACTTCC+CGG + chr4_4:56207934-56207953 None:intergenic 50.0%
AAGCAACAGCTAGCTGCTCT+AGG - chr4_4:56207946-56207965 Msa0689230:intron 50.0%
! ACAGCTAGCTGCTCTAGGTA+TGG - chr4_4:56207951-56207970 Msa0689230:intron 50.0%
GATGAACAGTTCAGCTGGAC+AGG - chr4_4:56208664-56208683 Msa0689230:intron 50.0%
AAAAACGTGCGCAAGCCTCA+TGG - chr4_4:56209059-56209078 Msa0689230:intron 50.0%
GACAAGATGCATAAAGCGCG+TGG + chr4_4:56209455-56209474 None:intergenic 50.0%
CGCGCTTTATGCATCTTGTC+AGG - chr4_4:56209455-56209474 Msa0689230:intron 50.0%
ACACTGACACTGGTAGAAGC+AGG + chr4_4:56209515-56209534 None:intergenic 50.0%
GGTGGACCTCACAATAGAAC+TGG - chr4_4:56209940-56209959 Msa0689230:intron 50.0%
GGACCTCACAATAGAACTGG+TGG - chr4_4:56209943-56209962 Msa0689230:intron 50.0%
ACGGATGGTCATGTTATCGG+TGG - chr4_4:56209988-56210007 Msa0689230:intron 50.0%
GATGGTCATGTTATCGGTGG+TGG - chr4_4:56209991-56210010 Msa0689230:intron 50.0%
!! TTATCGGTGGTGGTGTTGCT+AGG - chr4_4:56210001-56210020 Msa0689230:intron 50.0%
CAAGCTCTCCAGGATAGCTT+AGG + chr4_4:56210325-56210344 None:intergenic 50.0%
GACCATGGGCCTATTTGGAT+TGG + chr4_4:56210421-56210440 None:intergenic 50.0%
! GTTTGCAGCTTTGTGTACGG+TGG - chr4_4:56210532-56210551 Msa0689230:CDS 50.0%
TGATTAGGTGGCTCACTTCC+TGG + chr4_4:56210643-56210662 None:intergenic 50.0%
!! CTTCTGGAACAGGCACAATG+TGG - chr4_4:56210674-56210693 Msa0689230:exon 50.0%
GCACAATGTGGCATGGATCA+AGG - chr4_4:56210686-56210705 Msa0689230:exon 50.0%
CCGTTTCTCCGAATCAGGAG+TGG + chr4_4:56207896-56207915 None:intergenic 55.0%
TGACACTGGTAGAAGCAGGC+TGG + chr4_4:56209511-56209530 None:intergenic 55.0%
! TGCCTTGTAGTGGAGGTAGC+CGG + chr4_4:56209563-56209582 None:intergenic 55.0%
TATTGCTGCAAGCCCTGTCC+AGG - chr4_4:56210026-56210045 Msa0689230:intron 55.0%
ACTTACGGTGGCGATTGGCA+TGG - chr4_4:56210157-56210176 Msa0689230:intron 55.0%
GAGACTTTGGTTGCTGCAGG+TGG - chr4_4:56210507-56210526 Msa0689230:CDS 55.0%
GGAACAGGCACAATGTGGCA+TGG - chr4_4:56210679-56210698 Msa0689230:exon 55.0%
CTCGGCCGTTTCTCCGAATC+AGG + chr4_4:56207901-56207920 None:intergenic 60.0%
GATTCGGAGAAACGGCCGAG+AGG - chr4_4:56207901-56207920 Msa0689230:intron 60.0%
TGCTTCCTTCCACTTCCCGG+TGG + chr4_4:56207931-56207950 None:intergenic 60.0%
! CACCGGCTACCTCCACTACA+AGG - chr4_4:56209558-56209577 Msa0689230:intron 60.0%
CGGAGAAACGGCCGAGAGGA+CGG - chr4_4:56207905-56207924 Msa0689230:intron 65.0%
CTTCCCGGTGGCCGTCCTCT+CGG + chr4_4:56207919-56207938 None:intergenic 70.0%
AGAGGACGGCCACCGGGAAG+TGG - chr4_4:56207919-56207938 Msa0689230:intron 70.0%
GACGGCCACCGGGAAGTGGA+AGG - chr4_4:56207923-56207942 Msa0689230:intron 70.0%
ACGGCCGAGAGGACGGCCAC+CGG - chr4_4:56207912-56207931 Msa0689230:intron 75.0%
! CGGCCGAGAGGACGGCCACC+GGG - chr4_4:56207913-56207932 Msa0689230:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 56207171 56211121 56207171 ID=Msa0689230;Name=Msa0689230
chr4_4 mRNA 56207171 56211121 56207171 ID=Msa0689230-mRNA-1;Parent=Msa0689230;Name=Msa0689230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=430|1|1|1|1|1|5|356|321
chr4_4 exon 56207171 56207766 56207171 ID=Msa0689230-mRNA-1:exon:14767;Parent=Msa0689230-mRNA-1
chr4_4 exon 56208245 56208403 56208245 ID=Msa0689230-mRNA-1:exon:14766;Parent=Msa0689230-mRNA-1
chr4_4 exon 56208748 56208879 56208748 ID=Msa0689230-mRNA-1:exon:14765;Parent=Msa0689230-mRNA-1
chr4_4 exon 56209568 56209635 56209568 ID=Msa0689230-mRNA-1:exon:14764;Parent=Msa0689230-mRNA-1
chr4_4 exon 56210325 56211121 56210325 ID=Msa0689230-mRNA-1:exon:14763;Parent=Msa0689230-mRNA-1
chr4_4 five_prime_UTR 56210692 56211121 56210692 ID=Msa0689230-mRNA-1:five_prime_utr;Parent=Msa0689230-mRNA-1
chr4_4 CDS 56210325 56210691 56210325 ID=Msa0689230-mRNA-1:cds;Parent=Msa0689230-mRNA-1
chr4_4 CDS 56209568 56209635 56209568 ID=Msa0689230-mRNA-1:cds;Parent=Msa0689230-mRNA-1
chr4_4 CDS 56208748 56208879 56208748 ID=Msa0689230-mRNA-1:cds;Parent=Msa0689230-mRNA-1
chr4_4 CDS 56208245 56208403 56208245 ID=Msa0689230-mRNA-1:cds;Parent=Msa0689230-mRNA-1
chr4_4 CDS 56207527 56207766 56207527 ID=Msa0689230-mRNA-1:cds;Parent=Msa0689230-mRNA-1
chr4_4 three_prime_UTR 56207171 56207526 56207171 ID=Msa0689230-mRNA-1:three_prime_utr;Parent=Msa0689230-mRNA-1
Gene Sequence

>Msa0689230

ATGGATGAGAGAGAAGCTATGTCATTTTCTGATGGGTTTGGTTCATATTACATGCATAGAGAAAGAGTGTTTCAACAACCACCTCCTGGGTTTAGAGCTTTGTCTAATCCTCATGGTGGTTCTGATGGTTCTGCATTTTCAGCAGAGCATCAACATGGTAGTTTTAGTCATGGTGCCGTAGTTCCTTATTCAGGGGAGCTGTCTGTGAAAAAGAAAAGAGGAAGACCTAGGAAGTATGGTCCTGATGTACCTGTTTCTTTGAGACTTTCTCCTATGTCTGCTACTGCTAATTCCACTCCTGATTCGGAGAAACGGCCGAGAGGACGGCCACCGGGAAGTGGAAGGAAGCAACAGCTAGCTGCTCTAGGTGAATGGATGAACAGTTCAGCTGGACAGGCTTTTTCACCTCATGTTATCACCATTGAAGCTCAAGAGGACATTGTAGCAAAGTTATTGTCATTTTCACAACATAGACCACGCGCTTTATGCATCTTGTCAGGAACTGGGACTGTATCTTCAGTCACTCTGCGCCAGCCTGCTTCTACCAGTGTCAGTGTTACATATGAGGGTCGATTCCAAATATTATGCTTATCTGGTTCTTTCTTGGTTGCTGAAGATGGTGGACCTCACAATAGAACTGGTGGCATTAGTGTTTCCCTTTCTAGTACGGATGGTCATGTTATCGGTGGTGGTGTTGCTAGGCTTATTGCTGCAAGCCCTGTCCAGGTGGTAGTTTGCAGCTTTGTGTACGGTGGTTCTAAGCCAAAGACAACAAAACAAGAAACTGCTGCAAAAGAAGATGATGATTCTGAGCCTCAGAGTAGTGACAAATTAGCTTCTCCAGGAAGTGAGCCACCTAATCAAAACTATACAGCTTCTGGAACAGGCACAATGTGGCATGGATCAAGGACAGTAGACGTGAAAAGTACACAACCACACACTGGTATTGATTTGATGAACGGGTGA
Protein sequence

>Msa0689230

MDEREAMSFSDGFGSYYMHRERVFQQPPPGFRALSNPHGGSDGSAFSAEHQHGSFSHGAVVPYSGELSVKKKRGRPRKYGPDVPVSLRLSPMSATANSTPDSEKRPRGRPPGSGRKQQLAALGEWMNSSAGQAFSPHVITIEAQEDIVAKLLSFSQHRPRALCILSGTGTVSSVTLRQPASTSVSVTYEGRFQILCLSGSFLVAEDGGPHNRTGGISVSLSSTDGHVIGGGVARLIAASPVQVVVCSFVYGGSKPKTTKQETAAKEDDDSEPQSSDKLASPGSEPPNQNYTASGTGTMWHGSRTVDVKSTQPHTGIDLMNG*