AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0753980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0753980 MtrunA17_Chr5g0398211 97.719 263 6 0 1 263 1 263 0.0 538
Msa0753980 MtrunA17_Chr3g0125521 49.432 176 84 3 38 212 50 221 1.47e-53 174
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0753980 AT4G22920.2 68.482 257 67 4 11 260 9 258 7.23e-124 353
Msa0753980 AT4G22920.1 68.482 257 67 4 11 260 9 258 7.23e-124 353
Msa0753980 AT4G11910.1 64.286 252 85 4 11 257 9 260 4.45e-109 316
Msa0753980 AT4G11911.1 64.935 231 78 2 11 239 9 238 3.97e-104 303
Msa0753980 AT4G11911.2 70.854 199 57 1 41 239 1 198 5.00e-100 291
Msa0753980 AT1G44000.1 53.005 183 77 5 38 216 57 234 5.61e-59 188

Find 95 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATAACCGTCTTCTATT+TGG 0.148851 5_2:-7580469 None:intergenic
CATTCTACCTTGTTGAATTC+TGG 0.170302 5_2:-7581762 None:intergenic
GAACAGGTTGCTAGGTTATT+TGG 0.187592 5_2:+7580615 Msa0753980:intron
TAAGATTGAGCTAAGAAAAT+TGG 0.198138 5_2:-7580159 None:intergenic
CCAAAGGGACCACCAAAATT+TGG 0.219438 5_2:+7581827 Msa0753980:CDS
ATTTACATTGAAAAGGGTTT+TGG 0.242894 5_2:-7582047 None:intergenic
AAATACCTGAGAGTTATTTA+TGG 0.253599 5_2:-7580778 None:intergenic
ACCAATGCTTCCTGTAATTC+AGG 0.279537 5_2:-7581714 None:intergenic
CTTCTCTATCATCATAATAA+TGG 0.299208 5_2:-7579871 None:intergenic
GCTGAGGTAGGGCCAAATTT+TGG 0.301168 5_2:-7581839 None:intergenic
TTAATTGAAGTGTTGTTTCA+TGG 0.306037 5_2:+7582252 Msa0753980:three_prime_UTR
TGTTGAGAAGAATCTTCTTT+AGG 0.306442 5_2:-7580191 None:intergenic
CACCAACTATCCTGAATTAC+AGG 0.327258 5_2:+7581704 Msa0753980:CDS
TTATTGTTGTGTATGACTTT+TGG 0.342033 5_2:-7580091 None:intergenic
TGAGTTTCAATTCCATCAAT+AGG 0.352407 5_2:-7581951 None:intergenic
TAAGTCCTTGGAAGATTTCC+TGG 0.366121 5_2:-7580702 None:intergenic
TTGTGAGTCCACAAAGATAT+TGG 0.366167 5_2:+7580344 Msa0753980:five_prime_UTR
TTCTTATATTTACATTGAAA+AGG 0.368902 5_2:-7582054 None:intergenic
GGTTGTGAAGCCTCCTTTAG+TGG 0.373904 5_2:-7581792 None:intergenic
ATTCAACAAGGTAGAATGTT+GGG 0.383024 5_2:+7581767 Msa0753980:CDS
AACTTACCACGTGGTCTTGT+TGG 0.385436 5_2:-7579957 None:intergenic
CACATACAGGAACAATTGAT+TGG 0.393271 5_2:-7580498 None:intergenic
TTCCAAATAGAAGACGGTTA+TGG 0.397479 5_2:+7580467 Msa0753980:CDS
GATACTTATGAACCTATTGA+TGG 0.400985 5_2:+7581939 Msa0753980:CDS
CATGTTCATTGTCACATTAG+TGG 0.407387 5_2:+7581050 Msa0753980:CDS
AATTACAGGAAGCATTGGTT+TGG 0.424733 5_2:+7581718 Msa0753980:CDS
ATTACAGGAAGCATTGGTTT+GGG 0.429267 5_2:+7581719 Msa0753980:CDS
ATTTGAAGCATCAAAATTGA+AGG 0.430414 5_2:+7580647 Msa0753980:CDS
AGGTTTATGTTGAGGTGAAA+AGG 0.439529 5_2:-7580440 None:intergenic
ACCTCATTAGAGCACGGCAT+TGG 0.445650 5_2:-7581909 None:intergenic
TGATTTGATTTAGGTATTGA+AGG 0.449677 5_2:+7581653 Msa0753980:intron
TTCCTGTAATTCAGGATAGT+TGG 0.452404 5_2:-7581706 None:intergenic
CCTCATTAGAGCACGGCATT+GGG 0.453522 5_2:-7581908 None:intergenic
TCCTGAATTACAGGAAGCAT+TGG 0.454594 5_2:+7581713 Msa0753980:CDS
CAATGGTCTATTCAATTCCT+AGG 0.455657 5_2:-7582187 None:intergenic
TCTTATATTTACATTGAAAA+GGG 0.457222 5_2:-7582053 None:intergenic
TTTGATGCTTCAAATATAGC+TGG 0.465176 5_2:-7580639 None:intergenic
TTCAATTGCAGTTGCAGGGA+TGG 0.488186 5_2:+7580961 Msa0753980:intron
AACTTAGAAGTGAGCATAGG+AGG 0.493060 5_2:-7580409 None:intergenic
CAATGTAAATATAAGAAAAG+TGG 0.494441 5_2:+7582060 Msa0753980:three_prime_UTR
TTCTTGACATGGCTGAGGTA+GGG 0.498887 5_2:-7581850 None:intergenic
TTTGATGAGTATAAGAATGA+AGG 0.500949 5_2:-7580266 None:intergenic
AGTTAGATCCAATATCTTTG+TGG 0.502804 5_2:-7580352 None:intergenic
AGAATGTTGGGGTCCACTAA+AGG 0.517602 5_2:+7581779 Msa0753980:CDS
GAATTGAATAGACCATTGTA+AGG 0.518903 5_2:+7582192 Msa0753980:three_prime_UTR
TCAAACCATAAATAACTCTC+AGG 0.521294 5_2:+7580773 Msa0753980:CDS
ATGGTATAATAGATTGCAAA+GGG 0.522358 5_2:+7580980 Msa0753980:CDS
CCCAATGCCGTGCTCTAATG+AGG 0.522660 5_2:+7581908 Msa0753980:CDS
AACCTACTGGTGGGACCCAA+AGG 0.523442 5_2:+7581811 Msa0753980:CDS
TTTCTTGACATGGCTGAGGT+AGG 0.526253 5_2:-7581851 None:intergenic
ATTGATGAAGACAAACATCC+AGG 0.527903 5_2:+7580684 Msa0753980:CDS
TGTGTTAACGTATAAGTCCT+TGG 0.528432 5_2:-7580714 None:intergenic
TGTAACCTCAAAACTCACTT+TGG 0.528670 5_2:+7580743 Msa0753980:CDS
TTATGTTGAGGTGAAAAGGA+AGG 0.536070 5_2:-7580436 None:intergenic
TCCCTTTGGGTCCCACCAGT+AGG 0.536170 5_2:-7581813 None:intergenic
GGCATTGGGCTCAACTTGAA+CGG 0.536494 5_2:-7581894 None:intergenic
ACCTACTGGTGGGACCCAAA+GGG 0.553910 5_2:+7581812 Msa0753980:CDS
CTCTATCATCATAATAATGG+AGG 0.557142 5_2:-7579868 None:intergenic
AAGGAGGCTTCACAACCTAC+TGG 0.560131 5_2:+7581798 Msa0753980:CDS
GGAATTCAATTGCAGTTGCA+GGG 0.565695 5_2:+7580957 Msa0753980:intron
CACTAATGTGACAATGAACA+TGG 0.571160 5_2:-7581049 None:intergenic
AATTCAACAAGGTAGAATGT+TGG 0.577576 5_2:+7581766 Msa0753980:CDS
TTGAACTTAGAAGTGAGCAT+AGG 0.579985 5_2:-7580412 None:intergenic
GAGCATAGGAGGAGGAGCAG+TGG 0.585361 5_2:-7580398 None:intergenic
TCTATACGTTCCTCATTGTG+AGG 0.592576 5_2:+7582018 Msa0753980:three_prime_UTR
TTAGAAGTGAGCATAGGAGG+AGG 0.595572 5_2:-7580406 None:intergenic
AGTTGTGGCGCAGTGGAAGA+AGG 0.597675 5_2:+7581007 Msa0753980:CDS
CTAATTTGTCTCTAATCCAA+CGG 0.599107 5_2:-7579933 None:intergenic
ATTGCAAAGGGATGAAGTTG+TGG 0.601150 5_2:+7580992 Msa0753980:CDS
TAAGTAGTAGTCTTGTGCAA+TGG 0.603108 5_2:-7580038 None:intergenic
AACATCCAGGAAATCTTCCA+AGG 0.610037 5_2:+7580697 Msa0753980:CDS
TTTGGGTTTGTGATTGCTTG+CGG 0.610355 5_2:-7580067 None:intergenic
TTTGCTTGTAACAAGTGATG+TGG 0.612852 5_2:-7580220 None:intergenic
GACAAAGAATTAACGTTACG+TGG 0.612859 5_2:-7580320 None:intergenic
GATCTAACTATACAAGAACA+TGG 0.615433 5_2:+7580366 Msa0753980:exon
GTTCATTGTCACATTAGTGG+TGG 0.617241 5_2:+7581053 Msa0753980:CDS
TTGCTTGTAACAAGTGATGT+GGG 0.620900 5_2:-7580219 None:intergenic
GGCGCAGTGGAAGAAGGTGA+AGG 0.625074 5_2:+7581013 Msa0753980:CDS
TTGATGAGTATAAGAATGAA+GGG 0.626743 5_2:-7580265 None:intergenic
TTCAACAAGGTAGAATGTTG+GGG 0.626780 5_2:+7581768 Msa0753980:CDS
GAGGCTTCACAACCTACTGG+TGG 0.627510 5_2:+7581801 Msa0753980:CDS
GCGCAGTGGAAGAAGGTGAA+GGG 0.627737 5_2:+7581014 Msa0753980:CDS
AAAAGAAACGTGTCTTAGAG+AGG 0.630491 5_2:+7579985 Msa0753980:five_prime_UTR
GGGATGAAGTTGTGGCGCAG+TGG 0.632593 5_2:+7581000 Msa0753980:CDS
GATGGTATAATAGATTGCAA+AGG 0.636493 5_2:+7580979 Msa0753980:CDS
ATTGGGCTCAACTTGAACGG+TGG 0.647840 5_2:-7581891 None:intergenic
ATGTTGGGGTCCACTAAAGG+AGG 0.649589 5_2:+7581782 Msa0753980:CDS
AGGCTTCACAACCTACTGGT+GGG 0.654541 5_2:+7581802 Msa0753980:CDS
TTGTGAACCTCATTAGAGCA+CGG 0.658169 5_2:-7581915 None:intergenic
ATCTAACTATACAAGAACAT+GGG 0.661857 5_2:+7580367 Msa0753980:exon
TAAGAAATGAGACTTTCGTG+TGG 0.719120 5_2:-7581994 None:intergenic
ATTTGTCTCTAATCCAACGG+TGG 0.720023 5_2:-7579930 None:intergenic
AAAGATTCCAGAATTCAACA+AGG 0.735332 5_2:+7581755 Msa0753980:CDS
CTTCTGCAAAGAGTTACCCG+TGG 0.735433 5_2:+7581118 Msa0753980:CDS
ATTAGTCCAACAAGACCACG+TGG 0.792998 5_2:+7579951 Msa0753980:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATAAGTATTGAATTTT+AGG + chr5_2:7580912-7580931 Msa0753980:intron 10.0%
!!! AATAATAAGTATTGAATTTT+AGG + chr5_2:7580912-7580931 Msa0753980:intron 10.0%
!! AATTTAGAAAGATTAAAGAA+AGG + chr5_2:7580539-7580558 Msa0753980:intron 15.0%
!!! AATAAAAAAGTATACAAACA+TGG + chr5_2:7580935-7580954 Msa0753980:intron 15.0%
!!! ATAAAAAAGTATACAAACAT+GGG + chr5_2:7580936-7580955 Msa0753980:intron 15.0%
!! CTAAATTTGAATTACATATA+TGG + chr5_2:7581438-7581457 Msa0753980:intron 15.0%
!! TCTTATATTTACATTGAAAA+GGG - chr5_2:7582056-7582075 None:intergenic 15.0%
!! TTCTTATATTTACATTGAAA+AGG - chr5_2:7582057-7582076 None:intergenic 15.0%
!! AATTTAGAAAGATTAAAGAA+AGG + chr5_2:7580539-7580558 Msa0753980:intron 15.0%
!!! AATAAAAAAGTATACAAACA+TGG + chr5_2:7580935-7580954 Msa0753980:intron 15.0%
!!! ATAAAAAAGTATACAAACAT+GGG + chr5_2:7580936-7580955 Msa0753980:intron 15.0%
!! CTAAATTTGAATTACATATA+TGG + chr5_2:7581438-7581457 Msa0753980:intron 15.0%
!! TCTTATATTTACATTGAAAA+GGG - chr5_2:7582056-7582075 None:intergenic 15.0%
!! TTCTTATATTTACATTGAAA+AGG - chr5_2:7582057-7582076 None:intergenic 15.0%
!! TAAAAAAAGTAAAGTAAGTG+TGG - chr5_2:7581238-7581257 None:intergenic 20.0%
!! CAAATCAAATGATAAAAAGT+TGG - chr5_2:7581535-7581554 None:intergenic 20.0%
!!! ATATGTGTTTGATTTGATTT+AGG + chr5_2:7581644-7581663 Msa0753980:intron 20.0%
!! CAATGTAAATATAAGAAAAG+TGG + chr5_2:7582060-7582079 Msa0753980:three_prime_UTR 20.0%
!! TAAAAAAAGTAAAGTAAGTG+TGG - chr5_2:7581238-7581257 None:intergenic 20.0%
!! CAAATCAAATGATAAAAAGT+TGG - chr5_2:7581535-7581554 None:intergenic 20.0%
!!! ATATGTGTTTGATTTGATTT+AGG + chr5_2:7581644-7581663 Msa0753980:intron 20.0%
!! CAATGTAAATATAAGAAAAG+TGG + chr5_2:7582060-7582079 Msa0753980:three_prime_UTR 20.0%
! CTTCTCTATCATCATAATAA+TGG - chr5_2:7579874-7579893 None:intergenic 25.0%
!!! TTTTTGGTATAGCAAACTTT+GGG - chr5_2:7579901-7579920 None:intergenic 25.0%
!!! TTTTTTGGTATAGCAAACTT+TGG - chr5_2:7579902-7579921 None:intergenic 25.0%
!!! AGTTTGCTATACCAAAAAAT+TGG + chr5_2:7579903-7579922 Msa0753980:five_prime_UTR 25.0%
!! TTATTGTTGTGTATGACTTT+TGG - chr5_2:7580094-7580113 None:intergenic 25.0%
! TAAGATTGAGCTAAGAAAAT+TGG - chr5_2:7580162-7580181 None:intergenic 25.0%
! TTGATGAGTATAAGAATGAA+GGG - chr5_2:7580268-7580287 None:intergenic 25.0%
! TTTGATGAGTATAAGAATGA+AGG - chr5_2:7580269-7580288 None:intergenic 25.0%
! ATCTAACTATACAAGAACAT+GGG + chr5_2:7580367-7580386 Msa0753980:exon 25.0%
!! TTGATTTGACTTTCTATTTG+TGG + chr5_2:7580575-7580594 Msa0753980:intron 25.0%
!! TGATTTGACTTTCTATTTGT+GGG + chr5_2:7580576-7580595 Msa0753980:intron 25.0%
!! ATTTGAAGCATCAAAATTGA+AGG + chr5_2:7580647-7580666 Msa0753980:CDS 25.0%
!!! AAATTGAAGGTTTTGTTCTT+AGG + chr5_2:7580660-7580679 Msa0753980:CDS 25.0%
! AAATACCTGAGAGTTATTTA+TGG - chr5_2:7580781-7580800 None:intergenic 25.0%
! TTACTTCCATCAAACTAATA+GGG - chr5_2:7580847-7580866 None:intergenic 25.0%
! ATGGTATAATAGATTGCAAA+GGG + chr5_2:7580980-7580999 Msa0753980:CDS 25.0%
! CGAATATATCCAACAAAAAA+TGG - chr5_2:7581079-7581098 None:intergenic 25.0%
!!! AGTTTTTTTCTTGTACCTTA+AGG + chr5_2:7581297-7581316 Msa0753980:intron 25.0%
!!! TTTTCATCTCAATTGATAGT+AGG + chr5_2:7581393-7581412 Msa0753980:intron 25.0%
! TTACATATATGGCAATAACT+CGG + chr5_2:7581449-7581468 Msa0753980:intron 25.0%
! ATTTGGTCAACAAATTATCA+AGG + chr5_2:7581474-7581493 Msa0753980:intron 25.0%
! GACATGACAAATATATGATT+AGG + chr5_2:7581571-7581590 Msa0753980:intron 25.0%
!!! TGATTTGATTTAGGTATTGA+AGG + chr5_2:7581653-7581672 Msa0753980:intron 25.0%
!! ATTTACATTGAAAAGGGTTT+TGG - chr5_2:7582050-7582069 None:intergenic 25.0%
!!! GTAAACAAGTATTTTTACCT+AGG + chr5_2:7582170-7582189 Msa0753980:three_prime_UTR 25.0%
!!! TTAATTGAAGTGTTGTTTCA+TGG + chr5_2:7582252-7582271 Msa0753980:three_prime_UTR 25.0%
! CTTCTCTATCATCATAATAA+TGG - chr5_2:7579874-7579893 None:intergenic 25.0%
!!! TTTTTGGTATAGCAAACTTT+GGG - chr5_2:7579901-7579920 None:intergenic 25.0%
!!! TTTTTTGGTATAGCAAACTT+TGG - chr5_2:7579902-7579921 None:intergenic 25.0%
!!! AGTTTGCTATACCAAAAAAT+TGG + chr5_2:7579903-7579922 Msa0753980:five_prime_UTR 25.0%
!! TTATTGTTGTGTATGACTTT+TGG - chr5_2:7580094-7580113 None:intergenic 25.0%
! TAAGATTGAGCTAAGAAAAT+TGG - chr5_2:7580162-7580181 None:intergenic 25.0%
! TTGATGAGTATAAGAATGAA+GGG - chr5_2:7580268-7580287 None:intergenic 25.0%
! TTTGATGAGTATAAGAATGA+AGG - chr5_2:7580269-7580288 None:intergenic 25.0%
! ATCTAACTATACAAGAACAT+GGG + chr5_2:7580367-7580386 Msa0753980:exon 25.0%
!! TTGATTTGACTTTCTATTTG+TGG + chr5_2:7580575-7580594 Msa0753980:intron 25.0%
!! TGATTTGACTTTCTATTTGT+GGG + chr5_2:7580576-7580595 Msa0753980:intron 25.0%
!! ATTTGAAGCATCAAAATTGA+AGG + chr5_2:7580647-7580666 Msa0753980:CDS 25.0%
!!! AAATTGAAGGTTTTGTTCTT+AGG + chr5_2:7580660-7580679 Msa0753980:CDS 25.0%
! AAATACCTGAGAGTTATTTA+TGG - chr5_2:7580781-7580800 None:intergenic 25.0%
! TTACTTCCATCAAACTAATA+GGG - chr5_2:7580847-7580866 None:intergenic 25.0%
! ATGGTATAATAGATTGCAAA+GGG + chr5_2:7580980-7580999 Msa0753980:CDS 25.0%
! CGAATATATCCAACAAAAAA+TGG - chr5_2:7581079-7581098 None:intergenic 25.0%
!!! AGTTTTTTTCTTGTACCTTA+AGG + chr5_2:7581297-7581316 Msa0753980:intron 25.0%
!!! TTTTCATCTCAATTGATAGT+AGG + chr5_2:7581393-7581412 Msa0753980:intron 25.0%
! TTACATATATGGCAATAACT+CGG + chr5_2:7581449-7581468 Msa0753980:intron 25.0%
! ATTTGGTCAACAAATTATCA+AGG + chr5_2:7581474-7581493 Msa0753980:intron 25.0%
! GACATGACAAATATATGATT+AGG + chr5_2:7581571-7581590 Msa0753980:intron 25.0%
!!! TGATTTGATTTAGGTATTGA+AGG + chr5_2:7581653-7581672 Msa0753980:intron 25.0%
!! ATTTACATTGAAAAGGGTTT+TGG - chr5_2:7582050-7582069 None:intergenic 25.0%
!!! GTAAACAAGTATTTTTACCT+AGG + chr5_2:7582170-7582189 Msa0753980:three_prime_UTR 25.0%
CTCTATCATCATAATAATGG+AGG - chr5_2:7579871-7579890 None:intergenic 30.0%
! CTAATTTGTCTCTAATCCAA+CGG - chr5_2:7579936-7579955 None:intergenic 30.0%
!!! TGTGTATGACTTTTGGTTTT+GGG - chr5_2:7580087-7580106 None:intergenic 30.0%
!!! TTGTGTATGACTTTTGGTTT+TGG - chr5_2:7580088-7580107 None:intergenic 30.0%
TGTTGAGAAGAATCTTCTTT+AGG - chr5_2:7580194-7580213 None:intergenic 30.0%
AGTTAGATCCAATATCTTTG+TGG - chr5_2:7580355-7580374 None:intergenic 30.0%
GATCTAACTATACAAGAACA+TGG + chr5_2:7580366-7580385 Msa0753980:exon 30.0%
! CTCTTTTTCCAAATAGAAGA+CGG + chr5_2:7580461-7580480 Msa0753980:CDS 30.0%
AAAGAGAAAGAAACACATAC+AGG - chr5_2:7580514-7580533 None:intergenic 30.0%
TTTGATGCTTCAAATATAGC+TGG - chr5_2:7580642-7580661 None:intergenic 30.0%
TCAAACCATAAATAACTCTC+AGG + chr5_2:7580773-7580792 Msa0753980:CDS 30.0%
GTTACTTCCATCAAACTAAT+AGG - chr5_2:7580848-7580867 None:intergenic 30.0%
GATGGTATAATAGATTGCAA+AGG + chr5_2:7580979-7580998 Msa0753980:CDS 30.0%
ATGGGTATTATGAGTTTGAA+AGG + chr5_2:7581167-7581186 Msa0753980:intron 30.0%
TGGGTATTATGAGTTTGAAA+GGG + chr5_2:7581168-7581187 Msa0753980:intron 30.0%
TGAGTTTGAAAGGGTAAATA+TGG + chr5_2:7581177-7581196 Msa0753980:intron 30.0%
GAGTTTGAAAGGGTAAATAT+GGG + chr5_2:7581178-7581197 Msa0753980:intron 30.0%
AGTTTGAAAGGGTAAATATG+GGG + chr5_2:7581179-7581198 Msa0753980:intron 30.0%
AAAAAAACTCGCAAATTGGT+CGG - chr5_2:7581286-7581305 None:intergenic 30.0%
CAAGAAAAAAACTCGCAAAT+TGG - chr5_2:7581290-7581309 None:intergenic 30.0%
TTAAAACCCCCTATTAATTG+AGG + chr5_2:7581336-7581355 Msa0753980:intron 30.0%
TAAAACCCCCTATTAATTGA+GGG + chr5_2:7581337-7581356 Msa0753980:intron 30.0%
TAAAACCCCTCAATTAATAG+GGG - chr5_2:7581346-7581365 None:intergenic 30.0%
CTAAAACCCCTCAATTAATA+GGG - chr5_2:7581347-7581366 None:intergenic 30.0%
! TCTAAAACCCCTCAATTAAT+AGG - chr5_2:7581348-7581367 None:intergenic 30.0%
AAAGATTCCAGAATTCAACA+AGG + chr5_2:7581755-7581774 Msa0753980:CDS 30.0%
AATTCAACAAGGTAGAATGT+TGG + chr5_2:7581766-7581785 Msa0753980:CDS 30.0%
ATTCAACAAGGTAGAATGTT+GGG + chr5_2:7581767-7581786 Msa0753980:CDS 30.0%
GATACTTATGAACCTATTGA+TGG + chr5_2:7581939-7581958 Msa0753980:CDS 30.0%
TGAGTTTCAATTCCATCAAT+AGG - chr5_2:7581954-7581973 None:intergenic 30.0%
GAATTGAATAGACCATTGTA+AGG + chr5_2:7582192-7582211 Msa0753980:three_prime_UTR 30.0%
! TGCAATTTTGAACCTTACAA+TGG - chr5_2:7582207-7582226 None:intergenic 30.0%
CTCTATCATCATAATAATGG+AGG - chr5_2:7579871-7579890 None:intergenic 30.0%
! CTAATTTGTCTCTAATCCAA+CGG - chr5_2:7579936-7579955 None:intergenic 30.0%
!!! TGTGTATGACTTTTGGTTTT+GGG - chr5_2:7580087-7580106 None:intergenic 30.0%
!!! TTGTGTATGACTTTTGGTTT+TGG - chr5_2:7580088-7580107 None:intergenic 30.0%
TGTTGAGAAGAATCTTCTTT+AGG - chr5_2:7580194-7580213 None:intergenic 30.0%
AGTTAGATCCAATATCTTTG+TGG - chr5_2:7580355-7580374 None:intergenic 30.0%
GATCTAACTATACAAGAACA+TGG + chr5_2:7580366-7580385 Msa0753980:exon 30.0%
! CTCTTTTTCCAAATAGAAGA+CGG + chr5_2:7580461-7580480 Msa0753980:CDS 30.0%
AAAGAGAAAGAAACACATAC+AGG - chr5_2:7580514-7580533 None:intergenic 30.0%
TTTGATGCTTCAAATATAGC+TGG - chr5_2:7580642-7580661 None:intergenic 30.0%
TCAAACCATAAATAACTCTC+AGG + chr5_2:7580773-7580792 Msa0753980:CDS 30.0%
GTTACTTCCATCAAACTAAT+AGG - chr5_2:7580848-7580867 None:intergenic 30.0%
GATGGTATAATAGATTGCAA+AGG + chr5_2:7580979-7580998 Msa0753980:CDS 30.0%
ATGGGTATTATGAGTTTGAA+AGG + chr5_2:7581167-7581186 Msa0753980:intron 30.0%
TGGGTATTATGAGTTTGAAA+GGG + chr5_2:7581168-7581187 Msa0753980:intron 30.0%
TGAGTTTGAAAGGGTAAATA+TGG + chr5_2:7581177-7581196 Msa0753980:intron 30.0%
GAGTTTGAAAGGGTAAATAT+GGG + chr5_2:7581178-7581197 Msa0753980:intron 30.0%
AGTTTGAAAGGGTAAATATG+GGG + chr5_2:7581179-7581198 Msa0753980:intron 30.0%
AAAAAAACTCGCAAATTGGT+CGG - chr5_2:7581286-7581305 None:intergenic 30.0%
CAAGAAAAAAACTCGCAAAT+TGG - chr5_2:7581290-7581309 None:intergenic 30.0%
TTAAAACCCCCTATTAATTG+AGG + chr5_2:7581336-7581355 Msa0753980:intron 30.0%
TAAAACCCCCTATTAATTGA+GGG + chr5_2:7581337-7581356 Msa0753980:intron 30.0%
TAAAACCCCTCAATTAATAG+GGG - chr5_2:7581346-7581365 None:intergenic 30.0%
CTAAAACCCCTCAATTAATA+GGG - chr5_2:7581347-7581366 None:intergenic 30.0%
! TCTAAAACCCCTCAATTAAT+AGG - chr5_2:7581348-7581367 None:intergenic 30.0%
AAAGATTCCAGAATTCAACA+AGG + chr5_2:7581755-7581774 Msa0753980:CDS 30.0%
AATTCAACAAGGTAGAATGT+TGG + chr5_2:7581766-7581785 Msa0753980:CDS 30.0%
ATTCAACAAGGTAGAATGTT+GGG + chr5_2:7581767-7581786 Msa0753980:CDS 30.0%
GATACTTATGAACCTATTGA+TGG + chr5_2:7581939-7581958 Msa0753980:CDS 30.0%
TGAGTTTCAATTCCATCAAT+AGG - chr5_2:7581954-7581973 None:intergenic 30.0%
GAATTGAATAGACCATTGTA+AGG + chr5_2:7582192-7582211 Msa0753980:three_prime_UTR 30.0%
! TGCAATTTTGAACCTTACAA+TGG - chr5_2:7582207-7582226 None:intergenic 30.0%
! TTTTGTGTTAACTTACCACG+TGG - chr5_2:7579969-7579988 None:intergenic 35.0%
AAAAGAAACGTGTCTTAGAG+AGG + chr5_2:7579985-7580004 Msa0753980:five_prime_UTR 35.0%
! TGTGCAATGGTGTCTATTTT+CGG - chr5_2:7580028-7580047 None:intergenic 35.0%
!! TAAGTAGTAGTCTTGTGCAA+TGG - chr5_2:7580041-7580060 None:intergenic 35.0%
TTGCTTGTAACAAGTGATGT+GGG - chr5_2:7580222-7580241 None:intergenic 35.0%
TTTGCTTGTAACAAGTGATG+TGG - chr5_2:7580223-7580242 None:intergenic 35.0%
GACAAAGAATTAACGTTACG+TGG - chr5_2:7580323-7580342 None:intergenic 35.0%
TTGTGAGTCCACAAAGATAT+TGG + chr5_2:7580344-7580363 Msa0753980:five_prime_UTR 35.0%
TTGAACTTAGAAGTGAGCAT+AGG - chr5_2:7580415-7580434 None:intergenic 35.0%
TTATGTTGAGGTGAAAAGGA+AGG - chr5_2:7580439-7580458 None:intergenic 35.0%
AGGTTTATGTTGAGGTGAAA+AGG - chr5_2:7580443-7580462 None:intergenic 35.0%
GGAAAAAGAGGTTTATGTTG+AGG - chr5_2:7580451-7580470 None:intergenic 35.0%
CGTCTTCTATTTGGAAAAAG+AGG - chr5_2:7580463-7580482 None:intergenic 35.0%
TTCCAAATAGAAGACGGTTA+TGG + chr5_2:7580467-7580486 Msa0753980:CDS 35.0%
TTCCATAACCGTCTTCTATT+TGG - chr5_2:7580472-7580491 None:intergenic 35.0%
CACATACAGGAACAATTGAT+TGG - chr5_2:7580501-7580520 None:intergenic 35.0%
TGACTTTCTATTTGTGGGTT+TGG + chr5_2:7580581-7580600 Msa0753980:intron 35.0%
! TTCTATTTGTGGGTTTGGTT+TGG + chr5_2:7580586-7580605 Msa0753980:intron 35.0%
!!! TTTGGTTTGGATTTTGGAAC+AGG + chr5_2:7580599-7580618 Msa0753980:intron 35.0%
ATTGATGAAGACAAACATCC+AGG + chr5_2:7580684-7580703 Msa0753980:CDS 35.0%
TGTGTTAACGTATAAGTCCT+TGG - chr5_2:7580717-7580736 None:intergenic 35.0%
TGTAACCTCAAAACTCACTT+TGG + chr5_2:7580743-7580762 Msa0753980:CDS 35.0%
! AATTGCCAAAGTGAGTTTTG+AGG - chr5_2:7580751-7580770 None:intergenic 35.0%
! TGTCTTCCCTATTAGTTTGA+TGG + chr5_2:7580838-7580857 Msa0753980:intron 35.0%
GTAACAAAACAGAGTTGAAG+AGG + chr5_2:7580863-7580882 Msa0753980:intron 35.0%
CACTAATGTGACAATGAACA+TGG - chr5_2:7581052-7581071 None:intergenic 35.0%
CATGTTCATTGTCACATTAG+TGG + chr5_2:7581050-7581069 Msa0753980:CDS 35.0%
AAAAAAGACATGCTTACCAC+GGG - chr5_2:7581137-7581156 None:intergenic 35.0%
GAAAAAAGACATGCTTACCA+CGG - chr5_2:7581138-7581157 None:intergenic 35.0%
!!! TCTTTTTTCACACACACGAT+GGG + chr5_2:7581149-7581168 Msa0753980:intron 35.0%
TCGGTAGGAAAACAATGTTT+CGG - chr5_2:7581267-7581286 None:intergenic 35.0%
AATCTTTGCAGTGTTCCTTA+AGG - chr5_2:7581315-7581334 None:intergenic 35.0%
AAAACCCCCTATTAATTGAG+GGG + chr5_2:7581338-7581357 Msa0753980:intron 35.0%
AAAACCCCTCAATTAATAGG+GGG - chr5_2:7581345-7581364 None:intergenic 35.0%
TGGTCAACAAATTATCAAGG+AGG + chr5_2:7581477-7581496 Msa0753980:intron 35.0%
! GTATTGAAGGCTTTTGTACA+CGG + chr5_2:7581666-7581685 Msa0753980:CDS 35.0%
TTCCTGTAATTCAGGATAGT+TGG - chr5_2:7581709-7581728 None:intergenic 35.0%
!! AATTACAGGAAGCATTGGTT+TGG + chr5_2:7581718-7581737 Msa0753980:CDS 35.0%
!! ATTACAGGAAGCATTGGTTT+GGG + chr5_2:7581719-7581738 Msa0753980:CDS 35.0%
CATTCTACCTTGTTGAATTC+TGG - chr5_2:7581765-7581784 None:intergenic 35.0%
TTCAACAAGGTAGAATGTTG+GGG + chr5_2:7581768-7581787 Msa0753980:CDS 35.0%
! CACTCACAATTTTCTTGACA+TGG - chr5_2:7581864-7581883 None:intergenic 35.0%
TAAGAAATGAGACTTTCGTG+TGG - chr5_2:7581997-7582016 None:intergenic 35.0%
! TTGGATTTTTCCTCACAATG+AGG - chr5_2:7582031-7582050 None:intergenic 35.0%
CAATGGTCTATTCAATTCCT+AGG - chr5_2:7582190-7582209 None:intergenic 35.0%
! TTTTGTGTTAACTTACCACG+TGG - chr5_2:7579969-7579988 None:intergenic 35.0%
AAAAGAAACGTGTCTTAGAG+AGG + chr5_2:7579985-7580004 Msa0753980:five_prime_UTR 35.0%
! TGTGCAATGGTGTCTATTTT+CGG - chr5_2:7580028-7580047 None:intergenic 35.0%
!! TAAGTAGTAGTCTTGTGCAA+TGG - chr5_2:7580041-7580060 None:intergenic 35.0%
TTGCTTGTAACAAGTGATGT+GGG - chr5_2:7580222-7580241 None:intergenic 35.0%
TTTGCTTGTAACAAGTGATG+TGG - chr5_2:7580223-7580242 None:intergenic 35.0%
GACAAAGAATTAACGTTACG+TGG - chr5_2:7580323-7580342 None:intergenic 35.0%
TTGTGAGTCCACAAAGATAT+TGG + chr5_2:7580344-7580363 Msa0753980:five_prime_UTR 35.0%
TTGAACTTAGAAGTGAGCAT+AGG - chr5_2:7580415-7580434 None:intergenic 35.0%
TTATGTTGAGGTGAAAAGGA+AGG - chr5_2:7580439-7580458 None:intergenic 35.0%
AGGTTTATGTTGAGGTGAAA+AGG - chr5_2:7580443-7580462 None:intergenic 35.0%
GGAAAAAGAGGTTTATGTTG+AGG - chr5_2:7580451-7580470 None:intergenic 35.0%
CGTCTTCTATTTGGAAAAAG+AGG - chr5_2:7580463-7580482 None:intergenic 35.0%
TTCCAAATAGAAGACGGTTA+TGG + chr5_2:7580467-7580486 Msa0753980:CDS 35.0%
TTCCATAACCGTCTTCTATT+TGG - chr5_2:7580472-7580491 None:intergenic 35.0%
CACATACAGGAACAATTGAT+TGG - chr5_2:7580501-7580520 None:intergenic 35.0%
TGACTTTCTATTTGTGGGTT+TGG + chr5_2:7580581-7580600 Msa0753980:intron 35.0%
! TTCTATTTGTGGGTTTGGTT+TGG + chr5_2:7580586-7580605 Msa0753980:intron 35.0%
!!! TTTGGTTTGGATTTTGGAAC+AGG + chr5_2:7580599-7580618 Msa0753980:intron 35.0%
ATTGATGAAGACAAACATCC+AGG + chr5_2:7580684-7580703 Msa0753980:CDS 35.0%
TGTGTTAACGTATAAGTCCT+TGG - chr5_2:7580717-7580736 None:intergenic 35.0%
TGTAACCTCAAAACTCACTT+TGG + chr5_2:7580743-7580762 Msa0753980:CDS 35.0%
! AATTGCCAAAGTGAGTTTTG+AGG - chr5_2:7580751-7580770 None:intergenic 35.0%
! TGTCTTCCCTATTAGTTTGA+TGG + chr5_2:7580838-7580857 Msa0753980:intron 35.0%
GTAACAAAACAGAGTTGAAG+AGG + chr5_2:7580863-7580882 Msa0753980:intron 35.0%
CACTAATGTGACAATGAACA+TGG - chr5_2:7581052-7581071 None:intergenic 35.0%
CATGTTCATTGTCACATTAG+TGG + chr5_2:7581050-7581069 Msa0753980:CDS 35.0%
AAAAAAGACATGCTTACCAC+GGG - chr5_2:7581137-7581156 None:intergenic 35.0%
GAAAAAAGACATGCTTACCA+CGG - chr5_2:7581138-7581157 None:intergenic 35.0%
!!! TCTTTTTTCACACACACGAT+GGG + chr5_2:7581149-7581168 Msa0753980:intron 35.0%
TCGGTAGGAAAACAATGTTT+CGG - chr5_2:7581267-7581286 None:intergenic 35.0%
AATCTTTGCAGTGTTCCTTA+AGG - chr5_2:7581315-7581334 None:intergenic 35.0%
AAAACCCCCTATTAATTGAG+GGG + chr5_2:7581338-7581357 Msa0753980:intron 35.0%
AAAACCCCTCAATTAATAGG+GGG - chr5_2:7581345-7581364 None:intergenic 35.0%
TGGTCAACAAATTATCAAGG+AGG + chr5_2:7581477-7581496 Msa0753980:intron 35.0%
! GTATTGAAGGCTTTTGTACA+CGG + chr5_2:7581666-7581685 Msa0753980:CDS 35.0%
TTCCTGTAATTCAGGATAGT+TGG - chr5_2:7581709-7581728 None:intergenic 35.0%
!! AATTACAGGAAGCATTGGTT+TGG + chr5_2:7581718-7581737 Msa0753980:CDS 35.0%
!! ATTACAGGAAGCATTGGTTT+GGG + chr5_2:7581719-7581738 Msa0753980:CDS 35.0%
CATTCTACCTTGTTGAATTC+TGG - chr5_2:7581765-7581784 None:intergenic 35.0%
TTCAACAAGGTAGAATGTTG+GGG + chr5_2:7581768-7581787 Msa0753980:CDS 35.0%
! CACTCACAATTTTCTTGACA+TGG - chr5_2:7581864-7581883 None:intergenic 35.0%
TAAGAAATGAGACTTTCGTG+TGG - chr5_2:7581997-7582016 None:intergenic 35.0%
! TTGGATTTTTCCTCACAATG+AGG - chr5_2:7582031-7582050 None:intergenic 35.0%
CAATGGTCTATTCAATTCCT+AGG - chr5_2:7582190-7582209 None:intergenic 35.0%
!!! ACGGTGGTAGACCAATTTTT+TGG - chr5_2:7579917-7579936 None:intergenic 40.0%
! AAAAATTGGTCTACCACCGT+TGG + chr5_2:7579917-7579936 Msa0753980:five_prime_UTR 40.0%
ATTTGTCTCTAATCCAACGG+TGG - chr5_2:7579933-7579952 None:intergenic 40.0%
! TTTGGGTTTGTGATTGCTTG+CGG - chr5_2:7580070-7580089 None:intergenic 40.0%
AACTTAGAAGTGAGCATAGG+AGG - chr5_2:7580412-7580431 None:intergenic 40.0%
!!! TGTGGGTTTGGTTTGGATTT+TGG + chr5_2:7580593-7580612 Msa0753980:intron 40.0%
GAACAGGTTGCTAGGTTATT+TGG + chr5_2:7580615-7580634 Msa0753980:intron 40.0%
AACATCCAGGAAATCTTCCA+AGG + chr5_2:7580697-7580716 Msa0753980:CDS 40.0%
TAAGTCCTTGGAAGATTTCC+TGG - chr5_2:7580705-7580724 None:intergenic 40.0%
GGAATTCAATTGCAGTTGCA+GGG + chr5_2:7580957-7580976 Msa0753980:intron 40.0%
ATTGCAAAGGGATGAAGTTG+TGG + chr5_2:7580992-7581011 Msa0753980:CDS 40.0%
GTTCATTGTCACATTAGTGG+TGG + chr5_2:7581053-7581072 Msa0753980:CDS 40.0%
!!! TAGTGGTGGCCATTTTTTGT+TGG + chr5_2:7581067-7581086 Msa0753980:CDS 40.0%
!!! GTCTTTTTTCACACACACGA+TGG + chr5_2:7581148-7581167 Msa0753980:intron 40.0%
ATGGCAATAACTCGGCAATT+TGG + chr5_2:7581457-7581476 Msa0753980:intron 40.0%
CACCAACTATCCTGAATTAC+AGG + chr5_2:7581704-7581723 Msa0753980:CDS 40.0%
! TCCTGAATTACAGGAAGCAT+TGG + chr5_2:7581713-7581732 Msa0753980:CDS 40.0%
ACCAATGCTTCCTGTAATTC+AGG - chr5_2:7581717-7581736 None:intergenic 40.0%
!! CAAATTTTGGTGGTCCCTTT+GGG - chr5_2:7581829-7581848 None:intergenic 40.0%
! CAATTTTCTTGACATGGCTG+AGG - chr5_2:7581858-7581877 None:intergenic 40.0%
TTGTGAACCTCATTAGAGCA+CGG - chr5_2:7581918-7581937 None:intergenic 40.0%
TCTATACGTTCCTCATTGTG+AGG + chr5_2:7582018-7582037 Msa0753980:three_prime_UTR 40.0%
!!! ACGGTGGTAGACCAATTTTT+TGG - chr5_2:7579917-7579936 None:intergenic 40.0%
! AAAAATTGGTCTACCACCGT+TGG + chr5_2:7579917-7579936 Msa0753980:five_prime_UTR 40.0%
ATTTGTCTCTAATCCAACGG+TGG - chr5_2:7579933-7579952 None:intergenic 40.0%
! TTTGGGTTTGTGATTGCTTG+CGG - chr5_2:7580070-7580089 None:intergenic 40.0%
AACTTAGAAGTGAGCATAGG+AGG - chr5_2:7580412-7580431 None:intergenic 40.0%
!!! TGTGGGTTTGGTTTGGATTT+TGG + chr5_2:7580593-7580612 Msa0753980:intron 40.0%
GAACAGGTTGCTAGGTTATT+TGG + chr5_2:7580615-7580634 Msa0753980:intron 40.0%
AACATCCAGGAAATCTTCCA+AGG + chr5_2:7580697-7580716 Msa0753980:CDS 40.0%
TAAGTCCTTGGAAGATTTCC+TGG - chr5_2:7580705-7580724 None:intergenic 40.0%
GGAATTCAATTGCAGTTGCA+GGG + chr5_2:7580957-7580976 Msa0753980:intron 40.0%
ATTGCAAAGGGATGAAGTTG+TGG + chr5_2:7580992-7581011 Msa0753980:CDS 40.0%
GTTCATTGTCACATTAGTGG+TGG + chr5_2:7581053-7581072 Msa0753980:CDS 40.0%
!!! TAGTGGTGGCCATTTTTTGT+TGG + chr5_2:7581067-7581086 Msa0753980:CDS 40.0%
!!! GTCTTTTTTCACACACACGA+TGG + chr5_2:7581148-7581167 Msa0753980:intron 40.0%
ATGGCAATAACTCGGCAATT+TGG + chr5_2:7581457-7581476 Msa0753980:intron 40.0%
CACCAACTATCCTGAATTAC+AGG + chr5_2:7581704-7581723 Msa0753980:CDS 40.0%
! TCCTGAATTACAGGAAGCAT+TGG + chr5_2:7581713-7581732 Msa0753980:CDS 40.0%
ACCAATGCTTCCTGTAATTC+AGG - chr5_2:7581717-7581736 None:intergenic 40.0%
!! CAAATTTTGGTGGTCCCTTT+GGG - chr5_2:7581829-7581848 None:intergenic 40.0%
! CAATTTTCTTGACATGGCTG+AGG - chr5_2:7581858-7581877 None:intergenic 40.0%
TTGTGAACCTCATTAGAGCA+CGG - chr5_2:7581918-7581937 None:intergenic 40.0%
TCTATACGTTCCTCATTGTG+AGG + chr5_2:7582018-7582037 Msa0753980:three_prime_UTR 40.0%
ATTAGTCCAACAAGACCACG+TGG + chr5_2:7579951-7579970 Msa0753980:five_prime_UTR 45.0%
!! AACTTACCACGTGGTCTTGT+TGG - chr5_2:7579960-7579979 None:intergenic 45.0%
TTAGAAGTGAGCATAGGAGG+AGG - chr5_2:7580409-7580428 None:intergenic 45.0%
!!! GGATTTTGGAACAGGTTGCT+AGG + chr5_2:7580607-7580626 Msa0753980:intron 45.0%
GGGAATTCAATTGCAGTTGC+AGG + chr5_2:7580956-7580975 Msa0753980:intron 45.0%
TTCAATTGCAGTTGCAGGGA+TGG + chr5_2:7580961-7580980 Msa0753980:intron 45.0%
AAACTCGCAAATTGGTCGGT+AGG - chr5_2:7581282-7581301 None:intergenic 45.0%
! TGATTTGCACCTACGAGACA+TGG + chr5_2:7581548-7581567 Msa0753980:intron 45.0%
GATTTGCACCTACGAGACAT+GGG + chr5_2:7581549-7581568 Msa0753980:intron 45.0%
! AAGGCTTTTGTACACGGTGA+CGG + chr5_2:7581672-7581691 Msa0753980:CDS 45.0%
AGAATGTTGGGGTCCACTAA+AGG + chr5_2:7581779-7581798 Msa0753980:CDS 45.0%
!! CCAAATTTTGGTGGTCCCTT+TGG - chr5_2:7581830-7581849 None:intergenic 45.0%
CCAAAGGGACCACCAAAATT+TGG + chr5_2:7581827-7581846 Msa0753980:CDS 45.0%
TTCTTGACATGGCTGAGGTA+GGG - chr5_2:7581853-7581872 None:intergenic 45.0%
TTTCTTGACATGGCTGAGGT+AGG - chr5_2:7581854-7581873 None:intergenic 45.0%
ATTAGTCCAACAAGACCACG+TGG + chr5_2:7579951-7579970 Msa0753980:five_prime_UTR 45.0%
!! AACTTACCACGTGGTCTTGT+TGG - chr5_2:7579960-7579979 None:intergenic 45.0%
TTAGAAGTGAGCATAGGAGG+AGG - chr5_2:7580409-7580428 None:intergenic 45.0%
!!! GGATTTTGGAACAGGTTGCT+AGG + chr5_2:7580607-7580626 Msa0753980:intron 45.0%
GGGAATTCAATTGCAGTTGC+AGG + chr5_2:7580956-7580975 Msa0753980:intron 45.0%
TTCAATTGCAGTTGCAGGGA+TGG + chr5_2:7580961-7580980 Msa0753980:intron 45.0%
AAACTCGCAAATTGGTCGGT+AGG - chr5_2:7581282-7581301 None:intergenic 45.0%
! TGATTTGCACCTACGAGACA+TGG + chr5_2:7581548-7581567 Msa0753980:intron 45.0%
GATTTGCACCTACGAGACAT+GGG + chr5_2:7581549-7581568 Msa0753980:intron 45.0%
! AAGGCTTTTGTACACGGTGA+CGG + chr5_2:7581672-7581691 Msa0753980:CDS 45.0%
AGAATGTTGGGGTCCACTAA+AGG + chr5_2:7581779-7581798 Msa0753980:CDS 45.0%
!! CCAAATTTTGGTGGTCCCTT+TGG - chr5_2:7581830-7581849 None:intergenic 45.0%
CCAAAGGGACCACCAAAATT+TGG + chr5_2:7581827-7581846 Msa0753980:CDS 45.0%
TTCTTGACATGGCTGAGGTA+GGG - chr5_2:7581853-7581872 None:intergenic 45.0%
TTTCTTGACATGGCTGAGGT+AGG - chr5_2:7581854-7581873 None:intergenic 45.0%
!!! TTTTATTTTACTTTTTTTTT+TGG + chr5_2:7582097-7582116 Msa0753980:three_prime_UTR 5.0%
!! TTATTTAATTCATAAAAATT+AGG + chr5_2:7582130-7582149 Msa0753980:three_prime_UTR 5.0%
!!! TTTTATTTTACTTTTTTTTT+TGG + chr5_2:7582097-7582116 Msa0753980:three_prime_UTR 5.0%
!! TTATTTAATTCATAAAAATT+AGG + chr5_2:7582130-7582149 Msa0753980:three_prime_UTR 5.0%
CTTCTGCAAAGAGTTACCCG+TGG + chr5_2:7581118-7581137 Msa0753980:CDS 50.0%
TGTCATGTCCCATGTCTCGT+AGG - chr5_2:7581560-7581579 None:intergenic 50.0%
ATGTTGGGGTCCACTAAAGG+AGG + chr5_2:7581782-7581801 Msa0753980:CDS 50.0%
GGTTGTGAAGCCTCCTTTAG+TGG - chr5_2:7581795-7581814 None:intergenic 50.0%
AAGGAGGCTTCACAACCTAC+TGG + chr5_2:7581798-7581817 Msa0753980:CDS 50.0%
AGGCTTCACAACCTACTGGT+GGG + chr5_2:7581802-7581821 Msa0753980:CDS 50.0%
! GAGGTAGGGCCAAATTTTGG+TGG - chr5_2:7581839-7581858 None:intergenic 50.0%
! GCTGAGGTAGGGCCAAATTT+TGG - chr5_2:7581842-7581861 None:intergenic 50.0%
ATTGGGCTCAACTTGAACGG+TGG - chr5_2:7581894-7581913 None:intergenic 50.0%
! GGCATTGGGCTCAACTTGAA+CGG - chr5_2:7581897-7581916 None:intergenic 50.0%
CCTCATTAGAGCACGGCATT+GGG - chr5_2:7581911-7581930 None:intergenic 50.0%
ACCTCATTAGAGCACGGCAT+TGG - chr5_2:7581912-7581931 None:intergenic 50.0%
CTTCTGCAAAGAGTTACCCG+TGG + chr5_2:7581118-7581137 Msa0753980:CDS 50.0%
TGTCATGTCCCATGTCTCGT+AGG - chr5_2:7581560-7581579 None:intergenic 50.0%
ATGTTGGGGTCCACTAAAGG+AGG + chr5_2:7581782-7581801 Msa0753980:CDS 50.0%
GGTTGTGAAGCCTCCTTTAG+TGG - chr5_2:7581795-7581814 None:intergenic 50.0%
AAGGAGGCTTCACAACCTAC+TGG + chr5_2:7581798-7581817 Msa0753980:CDS 50.0%
AGGCTTCACAACCTACTGGT+GGG + chr5_2:7581802-7581821 Msa0753980:CDS 50.0%
! GAGGTAGGGCCAAATTTTGG+TGG - chr5_2:7581839-7581858 None:intergenic 50.0%
! GCTGAGGTAGGGCCAAATTT+TGG - chr5_2:7581842-7581861 None:intergenic 50.0%
ATTGGGCTCAACTTGAACGG+TGG - chr5_2:7581894-7581913 None:intergenic 50.0%
! GGCATTGGGCTCAACTTGAA+CGG - chr5_2:7581897-7581916 None:intergenic 50.0%
CCTCATTAGAGCACGGCATT+GGG - chr5_2:7581911-7581930 None:intergenic 50.0%
ACCTCATTAGAGCACGGCAT+TGG - chr5_2:7581912-7581931 None:intergenic 50.0%
AGTTGTGGCGCAGTGGAAGA+AGG + chr5_2:7581007-7581026 Msa0753980:CDS 55.0%
GCGCAGTGGAAGAAGGTGAA+GGG + chr5_2:7581014-7581033 Msa0753980:CDS 55.0%
GAGGCTTCACAACCTACTGG+TGG + chr5_2:7581801-7581820 Msa0753980:CDS 55.0%
AACCTACTGGTGGGACCCAA+AGG + chr5_2:7581811-7581830 Msa0753980:CDS 55.0%
ACCTACTGGTGGGACCCAAA+GGG + chr5_2:7581812-7581831 Msa0753980:CDS 55.0%
CCCAATGCCGTGCTCTAATG+AGG + chr5_2:7581908-7581927 Msa0753980:CDS 55.0%
AGTTGTGGCGCAGTGGAAGA+AGG + chr5_2:7581007-7581026 Msa0753980:CDS 55.0%
GCGCAGTGGAAGAAGGTGAA+GGG + chr5_2:7581014-7581033 Msa0753980:CDS 55.0%
GAGGCTTCACAACCTACTGG+TGG + chr5_2:7581801-7581820 Msa0753980:CDS 55.0%
AACCTACTGGTGGGACCCAA+AGG + chr5_2:7581811-7581830 Msa0753980:CDS 55.0%
ACCTACTGGTGGGACCCAAA+GGG + chr5_2:7581812-7581831 Msa0753980:CDS 55.0%
CCCAATGCCGTGCTCTAATG+AGG + chr5_2:7581908-7581927 Msa0753980:CDS 55.0%
GAGCATAGGAGGAGGAGCAG+TGG - chr5_2:7580401-7580420 None:intergenic 60.0%
GGGATGAAGTTGTGGCGCAG+TGG + chr5_2:7581000-7581019 Msa0753980:CDS 60.0%
GGCGCAGTGGAAGAAGGTGA+AGG + chr5_2:7581013-7581032 Msa0753980:CDS 60.0%
TCCCTTTGGGTCCCACCAGT+AGG - chr5_2:7581816-7581835 None:intergenic 60.0%
GAGCATAGGAGGAGGAGCAG+TGG - chr5_2:7580401-7580420 None:intergenic 60.0%
GGGATGAAGTTGTGGCGCAG+TGG + chr5_2:7581000-7581019 Msa0753980:CDS 60.0%
GGCGCAGTGGAAGAAGGTGA+AGG + chr5_2:7581013-7581032 Msa0753980:CDS 60.0%
TCCCTTTGGGTCCCACCAGT+AGG - chr5_2:7581816-7581835 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 7579842 7582274 7579842 ID=Msa0753980;Name=Msa0753980
chr5_2 mRNA 7579842 7582274 7579842 ID=Msa0753980-mRNA-1;Parent=Msa0753980;Name=Msa0753980-mRNA-1;_AED=0.16;_eAED=0.16;_QI=543|1|1|1|1|1|4|288|263
chr5_2 exon 7579842 7580513 7579842 ID=Msa0753980-mRNA-1:exon:3374;Parent=Msa0753980-mRNA-1
chr5_2 exon 7580621 7580794 7580621 ID=Msa0753980-mRNA-1:exon:3375;Parent=Msa0753980-mRNA-1
chr5_2 exon 7580972 7581139 7580972 ID=Msa0753980-mRNA-1:exon:3376;Parent=Msa0753980-mRNA-1
chr5_2 exon 7581666 7582274 7581666 ID=Msa0753980-mRNA-1:exon:3377;Parent=Msa0753980-mRNA-1
chr5_2 five_prime_UTR 7579842 7580384 7579842 ID=Msa0753980-mRNA-1:five_prime_utr;Parent=Msa0753980-mRNA-1
chr5_2 CDS 7580385 7580513 7580385 ID=Msa0753980-mRNA-1:cds;Parent=Msa0753980-mRNA-1
chr5_2 CDS 7580621 7580794 7580621 ID=Msa0753980-mRNA-1:cds;Parent=Msa0753980-mRNA-1
chr5_2 CDS 7580972 7581139 7580972 ID=Msa0753980-mRNA-1:cds;Parent=Msa0753980-mRNA-1
chr5_2 CDS 7581666 7581986 7581666 ID=Msa0753980-mRNA-1:cds;Parent=Msa0753980-mRNA-1
chr5_2 three_prime_UTR 7581987 7582274 7581987 ID=Msa0753980-mRNA-1:three_prime_utr;Parent=Msa0753980-mRNA-1
Gene Sequence

>Msa0753980

ATGGGTACTCTAACCACTGCTCCTCCTCCTATGCTCACTTCTAAGTTCAAACCTTCCTTTTCACCTCAACATAAACCTCTTTTTCCAAATAGAAGACGGTTATGGAAGAAGAACCAATCAATTGTTCCTGTTGCTAGGTTATTTGGACCAGCTATATTTGAAGCATCAAAATTGAAGGTTTTGTTCTTAGGAATTGATGAAGACAAACATCCAGGAAATCTTCCAAGGACTTATACGTTAACACATAGTGATGTAACCTCAAAACTCACTTTGGCAATTTCTCAAACCATAAATAACTCTCAGTTGCAGGGATGGTATAATAGATTGCAAAGGGATGAAGTTGTGGCGCAGTGGAAGAAGGTGAAGGGAAAGATGTCTCTCCATGTTCATTGTCACATTAGTGGTGGCCATTTTTTGTTGGATATATTCGCTAGACTAAGATATTTCATCTTCTGCAAAGAGTTACCCGTGGTATTGAAGGCTTTTGTACACGGTGACGGCAATTTATTCACCAACTATCCTGAATTACAGGAAGCATTGGTTTGGGTATATTTTCATTCAAAGATTCCAGAATTCAACAAGGTAGAATGTTGGGGTCCACTAAAGGAGGCTTCACAACCTACTGGTGGGACCCAAAGGGACCACCAAAATTTGGCCCTACCTCAGCCATGTCAAGAAAATTGTGAGTGCTGCTTTCCACCGTTCAAGTTGAGCCCAATGCCGTGCTCTAATGAGGTTCACAATGATACTTATGAACCTATTGATGGAATTGAAACTCAACAATCACTGTAA
Protein sequence

>Msa0753980

MGTLTTAPPPMLTSKFKPSFSPQHKPLFPNRRRLWKKNQSIVPVARLFGPAIFEASKLKVLFLGIDEDKHPGNLPRTYTLTHSDVTSKLTLAISQTINNSQLQGWYNRLQRDEVVAQWKKVKGKMSLHVHCHISGGHFLLDIFARLRYFIFCKELPVVLKAFVHGDGNLFTNYPELQEALVWVYFHSKIPEFNKVECWGPLKEASQPTGGTQRDHQNLALPQPCQENCECCFPPFKLSPMPCSNEVHNDTYEPIDGIETQQSL*