Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0754050 | A0A072UEE6 | 80.921 | 152 | 11 | 3 | 1 | 136 | 1 | 150 | 2.00e-68 | 213 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0754050 | Msa0795840 | 0.877746 | 4.906935e-69 | -8.615850e-47 |
| Msa0754050 | Msa0833620 | 0.976592 | 4.022514e-142 | -8.615850e-47 |
| Msa0754050 | Msa1132810 | 0.958571 | 1.695396e-116 | -8.615850e-47 |
| Msa0523720 | Msa0754050 | 0.812501 | 4.107763e-51 | -8.615850e-47 |
| Msa0580350 | Msa0754050 | 0.917869 | 3.134523e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0754050 | MtrunA17_Chr5g0398841 | 80.921 | 152 | 11 | 3 | 1 | 136 | 1 | 150 | 3.85e-72 | 213 |
| Msa0754050 | MtrunA17_Chr5g0398821 | 48.387 | 155 | 59 | 6 | 1 | 138 | 1 | 151 | 2.77e-38 | 127 |
| Msa0754050 | MtrunA17_Chr5g0398831 | 43.210 | 162 | 58 | 7 | 1 | 138 | 6 | 157 | 2.11e-32 | 112 |
| Msa0754050 | MtrunA17_Chr4g0056621 | 31.690 | 142 | 79 | 4 | 6 | 131 | 1 | 140 | 1.42e-17 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTGCTGCAATCCAATTA+AGG | 0.297545 | 5_2:+7652300 | Msa0754050:CDS |
| TTTACAGAAATGACCTACTA+TGG | 0.312030 | 5_2:+7655666 | Msa0754050:intron |
| CCTGGCCTACTCGAAAGTTT+TGG | 0.354767 | 5_2:+7652373 | Msa0754050:CDS |
| CCTGGAGGTTGCAGCAATGA+TGG | 0.402054 | 5_2:-7652848 | None:intergenic |
| GACAGAAACATGTATAATCA+TGG | 0.403279 | 5_2:-7652339 | None:intergenic |
| TTATGAGGATGATGGTGGTT+TGG | 0.421436 | 5_2:+7652155 | Msa0754050:CDS |
| GGAAGTGATGACGGAGGAGC+GGG | 0.427720 | 5_2:+7654356 | Msa0754050:CDS |
| AAAATTGCAGCTTCTTCTCC+AGG | 0.461247 | 5_2:+7652818 | Msa0754050:intron |
| ATTGGATTGCAGCAAATGTC+TGG | 0.495953 | 5_2:-7652295 | None:intergenic |
| CCATCATTGCTGCAACCTCC+AGG | 0.500501 | 5_2:+7652848 | Msa0754050:CDS |
| TGGAAGTGATGACGGAGGAG+CGG | 0.513346 | 5_2:+7654355 | Msa0754050:CDS |
| ATTGCAGAATGTCTATTATG+AGG | 0.514995 | 5_2:+7652140 | Msa0754050:CDS |
| GCGGGGATGATCACCTTCAC+TGG | 0.521361 | 5_2:+7654374 | Msa0754050:CDS |
| CAAATGCTTCCACCTTGTGC+TGG | 0.524026 | 5_2:+7652226 | Msa0754050:CDS |
| CCAAAACTTTCGAGTAGGCC+AGG | 0.539426 | 5_2:-7652373 | None:intergenic |
| ACAGAAACATGTATAATCAT+GGG | 0.545168 | 5_2:-7652338 | None:intergenic |
| TAACACCAAAACTTTCGAGT+AGG | 0.584719 | 5_2:-7652378 | None:intergenic |
| GCAACACGTGGAAGTGATGA+CGG | 0.593939 | 5_2:+7654347 | Msa0754050:intron |
| AATGTCTATTATGAGGATGA+TGG | 0.602352 | 5_2:+7652147 | Msa0754050:CDS |
| CTGGTGGATGAGTGGAATTG+AGG | 0.608601 | 5_2:-7652276 | None:intergenic |
| GCAAATGTCTGGTGGATGAG+TGG | 0.618915 | 5_2:-7652284 | None:intergenic |
| TATGAAGTAGTGTCCAGTGA+AGG | 0.634695 | 5_2:-7654387 | None:intergenic |
| GTCTATTATGAGGATGATGG+TGG | 0.635774 | 5_2:+7652150 | Msa0754050:CDS |
| GTCAAAGTTGTTAACTCATG+TGG | 0.638396 | 5_2:+7652415 | Msa0754050:CDS |
| AGCAATGATGGAGAAAGACC+TGG | 0.643773 | 5_2:-7652836 | None:intergenic |
| TACGAATTTGCAGCAACACG+TGG | 0.655516 | 5_2:+7654335 | Msa0754050:intron |
| AACATCTTATCACCAGCACA+AGG | 0.675106 | 5_2:-7652238 | None:intergenic |
| GAAGTGATGACGGAGGAGCG+GGG | 0.687350 | 5_2:+7654357 | Msa0754050:CDS |
| GAATTGAGGTAGTCTGTGCA+TGG | 0.688761 | 5_2:-7652262 | None:intergenic |
| ATCTTATCACCAGCACAAGG+TGG | 0.690594 | 5_2:-7652235 | None:intergenic |
| GGATTGCAGCAAATGTCTGG+TGG | 0.693607 | 5_2:-7652292 | None:intergenic |
| ACACGTGGAAGTGATGACGG+AGG | 0.768255 | 5_2:+7654350 | Msa0754050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGAATTAACATTTTTTTA+AGG | - | chr5_2:7652993-7653012 | None:intergenic | 10.0% |
| !!! | ATTGATTTATTTTTAAACTT+AGG | - | chr5_2:7653123-7653142 | None:intergenic | 10.0% |
| !! | AATAATTCCATTAAAAAAAT+AGG | + | chr5_2:7653252-7653271 | Msa0754050:intron | 10.0% |
| !! | ATAATTCCATTAAAAAAATA+GGG | + | chr5_2:7653253-7653272 | Msa0754050:intron | 10.0% |
| !!! | TTATTTCTTTTTGAAATATA+GGG | - | chr5_2:7653355-7653374 | None:intergenic | 10.0% |
| !!! | ATTATTTCTTTTTGAAATAT+AGG | - | chr5_2:7653356-7653375 | None:intergenic | 10.0% |
| !!! | GAATTTTTAATAAAAGATAA+AGG | + | chr5_2:7653851-7653870 | Msa0754050:intron | 10.0% |
| !! | TTATTCATATTTACTTAAAT+AGG | + | chr5_2:7655166-7655185 | Msa0754050:intron | 10.0% |
| !!! | ATATATCATCCAATTATTTT+CGG | + | chr5_2:7652540-7652559 | Msa0754050:intron | 15.0% |
| !!! | TTTTAAAAGAATTTTGTCTA+CGG | + | chr5_2:7652604-7652623 | Msa0754050:intron | 15.0% |
| !!! | TTTTTTAGTAGAAAATAATC+AGG | - | chr5_2:7652766-7652785 | None:intergenic | 15.0% |
| !!! | GTAGTTTTCTTTAAATAAAT+AGG | + | chr5_2:7653184-7653203 | Msa0754050:intron | 15.0% |
| !!! | ATTTTTCCCTATTTTTTTAA+TGG | - | chr5_2:7653262-7653281 | None:intergenic | 15.0% |
| !! | ATATATCATTCTCATAAATA+TGG | + | chr5_2:7653566-7653585 | Msa0754050:intron | 15.0% |
| !! | TATATCATTCTCATAAATAT+GGG | + | chr5_2:7653567-7653586 | Msa0754050:intron | 15.0% |
| !!! | AAAATAACATACTTTTTTCT+TGG | + | chr5_2:7653614-7653633 | Msa0754050:intron | 15.0% |
| !!! | AATCCTTTATCTTTTTAAAA+AGG | + | chr5_2:7653686-7653705 | Msa0754050:intron | 15.0% |
| !!! | AACTTTTTTCTAAATCATTT+CGG | - | chr5_2:7653818-7653837 | None:intergenic | 15.0% |
| !!! | CTTTTATTAAAAATTCGTTT+TGG | - | chr5_2:7653847-7653866 | None:intergenic | 15.0% |
| !! | TTTAAACATTATAAAAACAG+TGG | - | chr5_2:7654041-7654060 | None:intergenic | 15.0% |
| !! | ATGTAATGATGTAAAATTAT+TGG | + | chr5_2:7654195-7654214 | Msa0754050:intron | 15.0% |
| !!! | ACATCTCAAATTTTTAAAAT+TGG | - | chr5_2:7654473-7654492 | None:intergenic | 15.0% |
| !! | ACAAATATAACAATTATTGT+TGG | - | chr5_2:7655409-7655428 | None:intergenic | 15.0% |
| !!! | TTAAAAATGACAAGTATTTT+AGG | - | chr5_2:7655443-7655462 | None:intergenic | 15.0% |
| !! | ATAAGTCAAAAATAAGTTAT+TGG | - | chr5_2:7655571-7655590 | None:intergenic | 15.0% |
| !! | ACACATATATATGAGTAATA+TGG | - | chr5_2:7652473-7652492 | None:intergenic | 20.0% |
| !! | ATTATTGTACCGAAAATAAT+TGG | - | chr5_2:7652552-7652571 | None:intergenic | 20.0% |
| !!! | AATAAATTACCTTTACGTTT+TGG | + | chr5_2:7652795-7652814 | Msa0754050:intron | 20.0% |
| !!! | TGTATCTATAATCTTTTTTG+AGG | + | chr5_2:7653390-7653409 | Msa0754050:intron | 20.0% |
| !!! | GTATCTATAATCTTTTTTGA+GGG | + | chr5_2:7653391-7653410 | Msa0754050:intron | 20.0% |
| !! | TCTTGGCTTAAATATATATT+TGG | + | chr5_2:7653631-7653650 | Msa0754050:intron | 20.0% |
| !!! | TCACCTTTTTAAAAAGATAA+AGG | - | chr5_2:7653692-7653711 | None:intergenic | 20.0% |
| !!! | ATTTTAGTCCTTATTTTCAT+TGG | + | chr5_2:7653713-7653732 | Msa0754050:intron | 20.0% |
| !! | TATCAATGCATAAAAAAAAG+TGG | + | chr5_2:7653945-7653964 | Msa0754050:intron | 20.0% |
| !!! | TCTCTTATTAAAAGTGTTAT+TGG | + | chr5_2:7654267-7654286 | Msa0754050:intron | 20.0% |
| !!! | CAAGCTAATTTTATTTGTAT+TGG | + | chr5_2:7654539-7654558 | Msa0754050:intron | 20.0% |
| !! | AATATCAAATAGTACAACTT+TGG | - | chr5_2:7654633-7654652 | None:intergenic | 20.0% |
| !!! | TTTCATTTCTATAAGCTTTT+AGG | + | chr5_2:7654705-7654724 | Msa0754050:intron | 20.0% |
| !!! | TTCATTTCTATAAGCTTTTA+GGG | + | chr5_2:7654706-7654725 | Msa0754050:intron | 20.0% |
| !!! | TATGAAATAGACTTTTAAAC+AGG | - | chr5_2:7654881-7654900 | None:intergenic | 20.0% |
| !!! | ATAATCAACATGAGTTTTTA+GGG | + | chr5_2:7654983-7655002 | Msa0754050:intron | 20.0% |
| !! | ATATAACAATTATTGTTGGA+CGG | - | chr5_2:7655405-7655424 | None:intergenic | 20.0% |
| ! | GCTTCAAAAATTTCCTTAAT+TGG | - | chr5_2:7652316-7652335 | None:intergenic | 25.0% |
| ! | ACAGAAACATGTATAATCAT+GGG | - | chr5_2:7652341-7652360 | None:intergenic | 25.0% |
| !!! | GTTTTTTGAACAAGCAAAAA+TGG | - | chr5_2:7652666-7652685 | None:intergenic | 25.0% |
| !!! | TTTCTCTCTGTCTTTATTTT+TGG | + | chr5_2:7652886-7652905 | Msa0754050:intron | 25.0% |
| !!! | TTCTCTCTGTCTTTATTTTT+GGG | + | chr5_2:7652887-7652906 | Msa0754050:intron | 25.0% |
| ! | CTTTGTAAGTAAAAGTTGTT+TGG | - | chr5_2:7653146-7653165 | None:intergenic | 25.0% |
| !! | AATCAAAGAGTACAAAACAA+TGG | + | chr5_2:7653422-7653441 | Msa0754050:intron | 25.0% |
| ! | TACCAAAACCAATGAAAATA+AGG | - | chr5_2:7653724-7653743 | None:intergenic | 25.0% |
| !! | ATCACTCTTTAAAAAGATAG+AGG | + | chr5_2:7653762-7653781 | Msa0754050:intron | 25.0% |
| ! | AATGATGTAAAATTATTGGC+CGG | + | chr5_2:7654199-7654218 | Msa0754050:intron | 25.0% |
| ! | ACTACTTCATATTGTTCATT+TGG | + | chr5_2:7654399-7654418 | Msa0754050:intron | 25.0% |
| ! | CTACTTCATATTGTTCATTT+GGG | + | chr5_2:7654400-7654419 | Msa0754050:intron | 25.0% |
| !!! | AGAAGTTAACATTTTTTCCA+CGG | + | chr5_2:7654594-7654613 | Msa0754050:intron | 25.0% |
| !! | AAATAGTACAACTTTGGTTT+AGG | - | chr5_2:7654627-7654646 | None:intergenic | 25.0% |
| !! | GATAATCAACATGAGTTTTT+AGG | + | chr5_2:7654982-7655001 | Msa0754050:intron | 25.0% |
| ! | TCATATTTACTTAAATAGGC+CGG | + | chr5_2:7655170-7655189 | Msa0754050:intron | 25.0% |
| ! | CTCTATTTAAGAAAAAAGTC+TGG | + | chr5_2:7655275-7655294 | Msa0754050:intron | 25.0% |
| ! | ATAGACGAATAAAGCTTATA+GGG | - | chr5_2:7655364-7655383 | None:intergenic | 25.0% |
| ! | AATAGACGAATAAAGCTTAT+AGG | - | chr5_2:7655365-7655384 | None:intergenic | 25.0% |
| ! | TATAACAATTATTGTTGGAC+GGG | - | chr5_2:7655404-7655423 | None:intergenic | 25.0% |
| ! | AGGTCATTTCTGTAAAATTA+AGG | - | chr5_2:7655662-7655681 | None:intergenic | 25.0% |
| ATTGCAGAATGTCTATTATG+AGG | + | chr5_2:7652140-7652159 | Msa0754050:CDS | 30.0% | |
| AATGTCTATTATGAGGATGA+TGG | + | chr5_2:7652147-7652166 | Msa0754050:CDS | 30.0% | |
| GACAGAAACATGTATAATCA+TGG | - | chr5_2:7652342-7652361 | None:intergenic | 30.0% | |
| !!! | TTTTGGTGTTAAACTAGCTT+TGG | + | chr5_2:7652390-7652409 | Msa0754050:CDS | 30.0% |
| GTATTATGTACCTTGAAGTT+TGG | - | chr5_2:7652644-7652663 | None:intergenic | 30.0% | |
| ! | TGCAATTTTCCAAAACGTAA+AGG | - | chr5_2:7652807-7652826 | None:intergenic | 30.0% |
| AATGAGTCCTAAGAATTGTT+CGG | - | chr5_2:7652917-7652936 | None:intergenic | 30.0% | |
| AAACAATGGATACATTGACA+CGG | + | chr5_2:7653436-7653455 | Msa0754050:intron | 30.0% | |
| !! | TCCACAAAGGTATTTCTATA+GGG | + | chr5_2:7653591-7653610 | Msa0754050:intron | 30.0% |
| !!! | GTCCTTATTTTCATTGGTTT+TGG | + | chr5_2:7653719-7653738 | Msa0754050:intron | 30.0% |
| ATGATGTAAAATTATTGGCC+GGG | + | chr5_2:7654200-7654219 | Msa0754050:intron | 30.0% | |
| !!! | CCATTTTTTTAAATGAGTCC+CGG | - | chr5_2:7654221-7654240 | None:intergenic | 30.0% |
| TTAAAAAAATGGTGTGCATG+TGG | + | chr5_2:7654229-7654248 | Msa0754050:intron | 30.0% | |
| TAAAAAAATGGTGTGCATGT+GGG | + | chr5_2:7654230-7654249 | Msa0754050:intron | 30.0% | |
| !!! | GCATGTATGCTGTTTTATTA+AGG | + | chr5_2:7654422-7654441 | Msa0754050:intron | 30.0% |
| ATTAAGGAGAATTTCTTGCT+TGG | + | chr5_2:7654438-7654457 | Msa0754050:intron | 30.0% | |
| TTTCTTCATTATTGTGTGTG+TGG | + | chr5_2:7654516-7654535 | Msa0754050:intron | 30.0% | |
| !!! | GAAGTTAACATTTTTTCCAC+GGG | + | chr5_2:7654595-7654614 | Msa0754050:intron | 30.0% |
| AAACGAGCAAATTAAATGCA+TGG | - | chr5_2:7654686-7654705 | None:intergenic | 30.0% | |
| !! | TTTCTATAAGCTTTTAGGGA+TGG | + | chr5_2:7654710-7654729 | Msa0754050:intron | 30.0% |
| CTAAAAAGTAAGTCTATGAC+AGG | - | chr5_2:7654817-7654836 | None:intergenic | 30.0% | |
| !!! | CTGTCATAGACTTACTTTTT+AGG | + | chr5_2:7654815-7654834 | Msa0754050:intron | 30.0% |
| ! | CCTATTTAGCTTAATAAGTC+AGG | - | chr5_2:7655233-7655252 | None:intergenic | 30.0% |
| CCTGACTTATTAAGCTAAAT+AGG | + | chr5_2:7655230-7655249 | Msa0754050:intron | 30.0% | |
| !! | ATAGGCTTTTAAAAAAGCCT+AGG | + | chr5_2:7655248-7655267 | Msa0754050:intron | 30.0% |
| TTCTTAAATAGAGAAAGCCT+AGG | - | chr5_2:7655268-7655287 | None:intergenic | 30.0% | |
| ! | GCTTTATTCGTCTATTATGT+AGG | + | chr5_2:7655369-7655388 | Msa0754050:intron | 30.0% |
| TTTACAGAAATGACCTACTA+TGG | + | chr5_2:7655666-7655685 | Msa0754050:intron | 30.0% | |
| ! | CATTTGCTGCAATCCAATTA+AGG | + | chr5_2:7652300-7652319 | Msa0754050:CDS | 35.0% |
| TTCTGTCAAATTTCAGTTCC+TGG | + | chr5_2:7652355-7652374 | Msa0754050:intron | 35.0% | |
| ! | TAACACCAAAACTTTCGAGT+AGG | - | chr5_2:7652381-7652400 | None:intergenic | 35.0% |
| GTCAAAGTTGTTAACTCATG+TGG | + | chr5_2:7652415-7652434 | Msa0754050:CDS | 35.0% | |
| ACACAATAGCATATGAAGCT+TGG | + | chr5_2:7652511-7652530 | Msa0754050:intron | 35.0% | |
| ! | TTGAAGTTTGGTGAGATACT+TGG | - | chr5_2:7652632-7652651 | None:intergenic | 35.0% |
| AAGTATCTCACCAAACTTCA+AGG | + | chr5_2:7652631-7652650 | Msa0754050:intron | 35.0% | |
| GGACATCAATGCTTTAGTTA+AGG | - | chr5_2:7652745-7652764 | None:intergenic | 35.0% | |
| ! | AAATTGAGAGGCTTTTTACC+TGG | - | chr5_2:7652869-7652888 | None:intergenic | 35.0% |
| AAAGACAGAGAGAAATTGAG+AGG | - | chr5_2:7652881-7652900 | None:intergenic | 35.0% | |
| TTACTTACAAAGTGACACAC+CGG | + | chr5_2:7653154-7653173 | Msa0754050:intron | 35.0% | |
| !! | CTCCACAAAGGTATTTCTAT+AGG | + | chr5_2:7653590-7653609 | Msa0754050:intron | 35.0% |
| TCCCTATAGAAATACCTTTG+TGG | - | chr5_2:7653595-7653614 | None:intergenic | 35.0% | |
| !! | TGGAAAGTATTGCTAGTGTT+AGG | + | chr5_2:7653965-7653984 | Msa0754050:intron | 35.0% |
| CCGGGACTCATTTAAAAAAA+TGG | + | chr5_2:7654218-7654237 | Msa0754050:intron | 35.0% | |
| TCGTAAAAACTCAGGATCAT+TGG | - | chr5_2:7654320-7654339 | None:intergenic | 35.0% | |
| CTGCAAATTCGTAAAAACTC+AGG | - | chr5_2:7654328-7654347 | None:intergenic | 35.0% | |
| ACTTCTTGATCTTAACGAAG+AGG | - | chr5_2:7654580-7654599 | None:intergenic | 35.0% | |
| !! | AAGCTTTTAGGGATGGAAAT+AGG | + | chr5_2:7654717-7654736 | Msa0754050:intron | 35.0% |
| TTTAGGGATGGAAATAGGTT+AGG | + | chr5_2:7654722-7654741 | Msa0754050:intron | 35.0% | |
| GCTTAGGCCTTCAAAAAAAT+TGG | - | chr5_2:7654783-7654802 | None:intergenic | 35.0% | |
| ! | AGACTTTTAAACAGGCTAGT+AGG | - | chr5_2:7654873-7654892 | None:intergenic | 35.0% |
| CGAATAAAGCTTATAGGGAT+GGG | - | chr5_2:7655359-7655378 | None:intergenic | 35.0% | |
| ACGAATAAAGCTTATAGGGA+TGG | - | chr5_2:7655360-7655379 | None:intergenic | 35.0% | |
| ! | GTCTATTATGAGGATGATGG+TGG | + | chr5_2:7652150-7652169 | Msa0754050:CDS | 40.0% |
| !! | TTATGAGGATGATGGTGGTT+TGG | + | chr5_2:7652155-7652174 | Msa0754050:CDS | 40.0% |
| AACATCTTATCACCAGCACA+AGG | - | chr5_2:7652241-7652260 | None:intergenic | 40.0% | |
| ATTGGATTGCAGCAAATGTC+TGG | - | chr5_2:7652298-7652317 | None:intergenic | 40.0% | |
| TAATATGGTACCTTTGCAGG+AGG | - | chr5_2:7652458-7652477 | None:intergenic | 40.0% | |
| GAGTAATATGGTACCTTTGC+AGG | - | chr5_2:7652461-7652480 | None:intergenic | 40.0% | |
| AAAATTGCAGCTTCTTCTCC+AGG | + | chr5_2:7652818-7652837 | Msa0754050:intron | 40.0% | |
| GGGATTACCGAACAATTCTT+AGG | + | chr5_2:7652907-7652926 | Msa0754050:intron | 40.0% | |
| AAAGAAAACTACTCAGCCAC+CGG | - | chr5_2:7653176-7653195 | None:intergenic | 40.0% | |
| CATAAATATGGGCTCCACAA+AGG | + | chr5_2:7653578-7653597 | Msa0754050:intron | 40.0% | |
| TATGAAGTAGTGTCCAGTGA+AGG | - | chr5_2:7654390-7654409 | None:intergenic | 40.0% | |
| TTCAAAAAAATTGGCAGGCC+AGG | - | chr5_2:7654774-7654793 | None:intergenic | 40.0% | |
| !!! | TGGCCTGCCAATTTTTTTGA+AGG | + | chr5_2:7654773-7654792 | Msa0754050:intron | 40.0% |
| AGGCCTTCAAAAAAATTGGC+AGG | - | chr5_2:7654779-7654798 | None:intergenic | 40.0% | |
| !!! | TTACTTTTTAGGCCTGAACC+TGG | + | chr5_2:7654826-7654845 | Msa0754050:intron | 40.0% |
| AAAAGCCTCTTAGGCCTATT+AGG | - | chr5_2:7655196-7655215 | None:intergenic | 40.0% | |
| GGTCATTCAAAAAGCCTCTT+AGG | - | chr5_2:7655205-7655224 | None:intergenic | 40.0% | |
| AGCTTAATAAGTCAGGTCAC+AGG | - | chr5_2:7655226-7655245 | None:intergenic | 40.0% | |
| AAGCTTATAGGGATGGGAAT+AGG | - | chr5_2:7655353-7655372 | None:intergenic | 40.0% | |
| ATCTTATCACCAGCACAAGG+TGG | - | chr5_2:7652238-7652257 | None:intergenic | 45.0% | |
| GAATTGAGGTAGTCTGTGCA+TGG | - | chr5_2:7652265-7652284 | None:intergenic | 45.0% | |
| ! | AGCAATGATGGAGAAAGACC+TGG | - | chr5_2:7652839-7652858 | None:intergenic | 45.0% |
| ! | TTGAGAGGCTTTTTACCTGG+AGG | - | chr5_2:7652866-7652885 | None:intergenic | 45.0% |
| TACGAATTTGCAGCAACACG+TGG | + | chr5_2:7654335-7654354 | Msa0754050:intron | 45.0% | |
| CTTAAATAGGCCGGCCTAAT+AGG | + | chr5_2:7655179-7655198 | Msa0754050:intron | 45.0% | |
| TATAGGGATGGGAATAGGTC+AGG | - | chr5_2:7655348-7655367 | None:intergenic | 45.0% | |
| CAAATGCTTCCACCTTGTGC+TGG | + | chr5_2:7652226-7652245 | Msa0754050:CDS | 50.0% | |
| ! | CTGGTGGATGAGTGGAATTG+AGG | - | chr5_2:7652279-7652298 | None:intergenic | 50.0% |
| ! | GCAAATGTCTGGTGGATGAG+TGG | - | chr5_2:7652287-7652306 | None:intergenic | 50.0% |
| GGATTGCAGCAAATGTCTGG+TGG | - | chr5_2:7652295-7652314 | None:intergenic | 50.0% | |
| ! | CCAAAACTTTCGAGTAGGCC+AGG | - | chr5_2:7652376-7652395 | None:intergenic | 50.0% |
| ! | CCTGGCCTACTCGAAAGTTT+TGG | + | chr5_2:7652373-7652392 | Msa0754050:CDS | 50.0% |
| ATGGTACCTTTGCAGGAGGT+GGG | - | chr5_2:7652454-7652473 | None:intergenic | 50.0% | |
| TATGGTACCTTTGCAGGAGG+TGG | - | chr5_2:7652455-7652474 | None:intergenic | 50.0% | |
| CTTACAAAGTGACACACCGG+TGG | + | chr5_2:7653157-7653176 | Msa0754050:intron | 50.0% | |
| GCAACACGTGGAAGTGATGA+CGG | + | chr5_2:7654347-7654366 | Msa0754050:intron | 50.0% | |
| TTGGTTTAGGTAGATGCCCG+TGG | - | chr5_2:7654614-7654633 | None:intergenic | 50.0% | |
| GAAATAGGTTAGGCCGAGCT+AGG | + | chr5_2:7654732-7654751 | Msa0754050:intron | 50.0% | |
| AGGCCTTACAAAGCCTAGCT+CGG | - | chr5_2:7654748-7654767 | None:intergenic | 50.0% | |
| TAAGTCTATGACAGGCCGCA+GGG | - | chr5_2:7654809-7654828 | None:intergenic | 50.0% | |
| TACTAGGCTTTCAGAAGGCC+AGG | - | chr5_2:7654847-7654866 | None:intergenic | 50.0% | |
| ! | GGCCTTCTGAAAGCCTAGTA+CGG | + | chr5_2:7654847-7654866 | Msa0754050:intron | 50.0% |
| GAAAAAAGTCTGGCCTGACC+TGG | + | chr5_2:7655285-7655304 | Msa0754050:intron | 50.0% | |
| TTCGATCCCACCTCCTGCAA+AGG | + | chr5_2:7652445-7652464 | Msa0754050:intron | 55.0% | |
| CCTGGAGGTTGCAGCAATGA+TGG | - | chr5_2:7652851-7652870 | None:intergenic | 55.0% | |
| CCATCATTGCTGCAACCTCC+AGG | + | chr5_2:7652848-7652867 | Msa0754050:CDS | 55.0% | |
| !! | ACACGTGGAAGTGATGACGG+AGG | + | chr5_2:7654350-7654369 | Msa0754050:CDS | 55.0% |
| !! | TGGAAGTGATGACGGAGGAG+CGG | + | chr5_2:7654355-7654374 | Msa0754050:CDS | 55.0% |
| ! | AGGCCGAGCTAGGCTTTGTA+AGG | + | chr5_2:7654742-7654761 | Msa0754050:intron | 55.0% |
| AAAATTGGCAGGCCAGGCTC+AGG | - | chr5_2:7654768-7654787 | None:intergenic | 55.0% | |
| GTAAGTCTATGACAGGCCGC+AGG | - | chr5_2:7654810-7654829 | None:intergenic | 55.0% | |
| GCTTTCAGAAGGCCAGGTTC+AGG | - | chr5_2:7654841-7654860 | None:intergenic | 55.0% | |
| GGCCGTACTAGGCTTTCAGA+AGG | - | chr5_2:7654852-7654871 | None:intergenic | 55.0% | |
| ACAGGCTAGTAGGCCGTACT+AGG | - | chr5_2:7654863-7654882 | None:intergenic | 55.0% | |
| GCCTCTTAGGCCTATTAGGC+CGG | - | chr5_2:7655192-7655211 | None:intergenic | 55.0% | |
| TCTGTCGTAGGCTAGGCTGT+AGG | + | chr5_2:7655308-7655327 | Msa0754050:intron | 55.0% | |
| !! | GGAAGTGATGACGGAGGAGC+GGG | + | chr5_2:7654356-7654375 | Msa0754050:CDS | 60.0% |
| !! | GAAGTGATGACGGAGGAGCG+GGG | + | chr5_2:7654357-7654376 | Msa0754050:CDS | 60.0% |
| GCGGGGATGATCACCTTCAC+TGG | + | chr5_2:7654374-7654393 | Msa0754050:CDS | 60.0% | |
| ! | GGCTTTGTAAGGCCTGAGCC+TGG | + | chr5_2:7654753-7654772 | Msa0754050:intron | 60.0% |
| GCCGGCCTAATAGGCCTAAG+AGG | + | chr5_2:7655188-7655207 | Msa0754050:intron | 60.0% | |
| AGCCTACGACAGACCAGGTC+AGG | - | chr5_2:7655301-7655320 | None:intergenic | 60.0% | |
| GACCTGGTCTGTCGTAGGCT+AGG | + | chr5_2:7655301-7655320 | Msa0754050:intron | 60.0% | |
| AGCCTAGCCTACGACAGACC+AGG | - | chr5_2:7655306-7655325 | None:intergenic | 60.0% | |
| ATAGGTCAGGCCGGCCTACA+GGG | - | chr5_2:7655335-7655354 | None:intergenic | 60.0% | |
| AATAGGTCAGGCCGGCCTAC+AGG | - | chr5_2:7655336-7655355 | None:intergenic | 60.0% | |
| GGGATGGGAATAGGTCAGGC+CGG | - | chr5_2:7655344-7655363 | None:intergenic | 60.0% | |
| GAAGGCCTAAGCCTGCCCTG+CGG | + | chr5_2:7654791-7654810 | Msa0754050:intron | 65.0% | |
| TCTATGACAGGCCGCAGGGC+AGG | - | chr5_2:7654805-7654824 | None:intergenic | 65.0% | |
| GGCCTGACCTGGTCTGTCGT+AGG | + | chr5_2:7655296-7655315 | Msa0754050:intron | 65.0% | |
| GCTAGGCTGTAGGCCCCTGT+AGG | + | chr5_2:7655318-7655337 | Msa0754050:intron | 65.0% | |
| TAGGTCAGGCCGGCCTACAG+GGG | - | chr5_2:7655334-7655353 | None:intergenic | 65.0% | |
| ACAGGCCGCAGGGCAGGCTT+AGG | - | chr5_2:7654799-7654818 | None:intergenic | 70.0% | |
| GGCTGTAGGCCCCTGTAGGC+CGG | + | chr5_2:7655322-7655341 | Msa0754050:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 7652133 | 7655697 | 7652133 | ID=Msa0754050;Name=Msa0754050 |
| chr5_2 | mRNA | 7652133 | 7655697 | 7652133 | ID=Msa0754050-mRNA-1;Parent=Msa0754050;Name=Msa0754050-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0.25|0.2|0.8|0|0|5|0|138 |
| chr5_2 | exon | 7652133 | 7652352 | 7652133 | ID=Msa0754050-mRNA-1:exon:3445;Parent=Msa0754050-mRNA-1 |
| chr5_2 | exon | 7652371 | 7652436 | 7652371 | ID=Msa0754050-mRNA-1:exon:3446;Parent=Msa0754050-mRNA-1 |
| chr5_2 | exon | 7652828 | 7652869 | 7652828 | ID=Msa0754050-mRNA-1:exon:3447;Parent=Msa0754050-mRNA-1 |
| chr5_2 | exon | 7654348 | 7654411 | 7654348 | ID=Msa0754050-mRNA-1:exon:3448;Parent=Msa0754050-mRNA-1 |
| chr5_2 | exon | 7655673 | 7655697 | 7655673 | ID=Msa0754050-mRNA-1:exon:3449;Parent=Msa0754050-mRNA-1 |
| chr5_2 | CDS | 7652133 | 7652352 | 7652133 | ID=Msa0754050-mRNA-1:cds;Parent=Msa0754050-mRNA-1 |
| chr5_2 | CDS | 7652371 | 7652436 | 7652371 | ID=Msa0754050-mRNA-1:cds;Parent=Msa0754050-mRNA-1 |
| chr5_2 | CDS | 7652828 | 7652869 | 7652828 | ID=Msa0754050-mRNA-1:cds;Parent=Msa0754050-mRNA-1 |
| chr5_2 | CDS | 7654348 | 7654411 | 7654348 | ID=Msa0754050-mRNA-1:cds;Parent=Msa0754050-mRNA-1 |
| chr5_2 | CDS | 7655673 | 7655697 | 7655673 | ID=Msa0754050-mRNA-1:cds;Parent=Msa0754050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
