Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1132810 | XP_013453429.1 | 80.921 | 152 | 11 | 3 | 1 | 136 | 1 | 150 | 4.19e-68 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1132810 | A0A072UEE6 | 80.921 | 152 | 11 | 3 | 1 | 136 | 1 | 150 | 2.00e-68 | 213 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0754050 | Msa1132810 | 0.958571 | 1.695396e-116 | -8.615850e-47 |
| Msa0795840 | Msa1132810 | 0.892711 | 1.233553e-74 | -8.615850e-47 |
| Msa0833620 | Msa1132810 | 0.944429 | 1.982274e-103 | -8.615850e-47 |
| Msa0580350 | Msa1132810 | 0.893653 | 5.146519e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1132810 | MtrunA17_Chr5g0398841 | 80.921 | 152 | 11 | 3 | 1 | 136 | 1 | 150 | 3.85e-72 | 213 |
| Msa1132810 | MtrunA17_Chr5g0398821 | 48.387 | 155 | 59 | 6 | 1 | 138 | 1 | 151 | 2.77e-38 | 127 |
| Msa1132810 | MtrunA17_Chr5g0398831 | 43.210 | 162 | 58 | 7 | 1 | 138 | 6 | 157 | 2.11e-32 | 112 |
| Msa1132810 | MtrunA17_Chr4g0056621 | 31.690 | 142 | 79 | 4 | 6 | 131 | 1 | 140 | 1.42e-17 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTGCTGCAATCCAATTA+AGG | 0.297545 | 7_3:-85669961 | Msa1132810:CDS |
| TTTACAGAAATGACCTACTA+TGG | 0.312030 | 7_3:-85666395 | Msa1132810:intron |
| CCTGGCCTACTCGAAAGTTT+TGG | 0.354767 | 7_3:-85669888 | Msa1132810:CDS |
| CCTGGAGGTTGCAGCAATGA+TGG | 0.402054 | 7_3:+85669412 | None:intergenic |
| GACAGAAACATGTATAATCA+TGG | 0.403279 | 7_3:+85669922 | None:intergenic |
| TTATGAGGATGATGGTGGTT+TGG | 0.421436 | 7_3:-85670106 | Msa1132810:CDS |
| GGAAGTGATGACGGAGGAGC+GGG | 0.427720 | 7_3:-85667704 | Msa1132810:CDS |
| AAAATTGCAGCTTCTTCTCC+AGG | 0.461247 | 7_3:-85669442 | Msa1132810:intron |
| ATTGGATTGCAGCAAATGTC+TGG | 0.495953 | 7_3:+85669966 | None:intergenic |
| CCATCATTGCTGCAACCTCC+AGG | 0.500501 | 7_3:-85669412 | Msa1132810:intron |
| TGGAAGTGATGACGGAGGAG+CGG | 0.513346 | 7_3:-85667705 | Msa1132810:CDS |
| ATTGCAGAATGTCTATTATG+AGG | 0.514995 | 7_3:-85670121 | Msa1132810:CDS |
| GCGGGGATGATCACCTTCAC+TGG | 0.521361 | 7_3:-85667686 | Msa1132810:CDS |
| CAAATGCTTCCACCTTGTGC+TGG | 0.524026 | 7_3:-85670035 | Msa1132810:CDS |
| CCAAAACTTTCGAGTAGGCC+AGG | 0.539426 | 7_3:+85669888 | None:intergenic |
| ACAGAAACATGTATAATCAT+GGG | 0.545168 | 7_3:+85669923 | None:intergenic |
| TAACACCAAAACTTTCGAGT+AGG | 0.584719 | 7_3:+85669883 | None:intergenic |
| GCAACACGTGGAAGTGATGA+CGG | 0.593939 | 7_3:-85667713 | Msa1132810:CDS |
| AATGTCTATTATGAGGATGA+TGG | 0.602352 | 7_3:-85670114 | Msa1132810:CDS |
| CTGGTGGATGAGTGGAATTG+AGG | 0.608601 | 7_3:+85669985 | None:intergenic |
| GCAAATGTCTGGTGGATGAG+TGG | 0.618915 | 7_3:+85669977 | None:intergenic |
| TATGAAGTAGTGTCCAGTGA+AGG | 0.634695 | 7_3:+85667673 | None:intergenic |
| GTCTATTATGAGGATGATGG+TGG | 0.635774 | 7_3:-85670111 | Msa1132810:CDS |
| GTCAAAGTTGTTAACTCATG+TGG | 0.638396 | 7_3:-85669846 | Msa1132810:intron |
| AGCAATGATGGAGAAAGACC+TGG | 0.643773 | 7_3:+85669424 | None:intergenic |
| TACGAATTTGCAGCAACACG+TGG | 0.655516 | 7_3:-85667725 | Msa1132810:intron |
| AACATCTTATCACCAGCACA+AGG | 0.675106 | 7_3:+85670023 | None:intergenic |
| GAAGTGATGACGGAGGAGCG+GGG | 0.687350 | 7_3:-85667703 | Msa1132810:CDS |
| GAATTGAGGTAGTCTGTGCA+TGG | 0.688761 | 7_3:+85669999 | None:intergenic |
| ATCTTATCACCAGCACAAGG+TGG | 0.690594 | 7_3:+85670026 | None:intergenic |
| GGATTGCAGCAAATGTCTGG+TGG | 0.693607 | 7_3:+85669969 | None:intergenic |
| ACACGTGGAAGTGATGACGG+AGG | 0.768255 | 7_3:-85667710 | Msa1132810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGAATTAACATTTTTTTA+AGG | + | chr7_3:85667247-85667266 | None:intergenic | 10.0% |
| !!! | ATTGATTTATTTTTAAACTT+AGG | + | chr7_3:85667377-85667396 | None:intergenic | 10.0% |
| !! | AATAATTCCATTAAAAAAAT+AGG | - | chr7_3:85667506-85667525 | Msa1132810:intron | 10.0% |
| !! | ATAATTCCATTAAAAAAATA+GGG | - | chr7_3:85667507-85667526 | Msa1132810:intron | 10.0% |
| !!! | TTATTTCTTTTTGAAATATA+GGG | + | chr7_3:85667609-85667628 | None:intergenic | 10.0% |
| !!! | ATTATTTCTTTTTGAAATAT+AGG | + | chr7_3:85667610-85667629 | None:intergenic | 10.0% |
| !!! | TTATTTCTTTTTGAAATATA+GGG | + | chr7_3:85667609-85667628 | None:intergenic | 10.0% |
| !!! | ATTATTTCTTTTTGAAATAT+AGG | + | chr7_3:85667610-85667629 | None:intergenic | 10.0% |
| !!! | GAATTTTTAATAAAAGATAA+AGG | - | chr7_3:85668304-85668323 | Msa1132810:intron | 10.0% |
| !! | TTATTCATATTTACTTAAAT+AGG | - | chr7_3:85669619-85669638 | Msa1132810:intron | 10.0% |
| !!! | ATATATCATCCAATTATTTT+CGG | - | chr7_3:85666793-85666812 | Msa1132810:intron | 15.0% |
| !!! | TTTTAAAAGAATTTTGTCTA+CGG | - | chr7_3:85666857-85666876 | Msa1132810:intron | 15.0% |
| !!! | TTTTTTAGTAGAAAATAATC+AGG | + | chr7_3:85667020-85667039 | None:intergenic | 15.0% |
| !!! | GTAGTTTTCTTTAAATAAAT+AGG | - | chr7_3:85667438-85667457 | Msa1132810:intron | 15.0% |
| !!! | ATTTTTCCCTATTTTTTTAA+TGG | + | chr7_3:85667516-85667535 | None:intergenic | 15.0% |
| !! | ATATATCATTCTCATAAATA+TGG | - | chr7_3:85668018-85668037 | Msa1132810:intron | 15.0% |
| !! | TATATCATTCTCATAAATAT+GGG | - | chr7_3:85668019-85668038 | Msa1132810:intron | 15.0% |
| !!! | AAAATAACATACTTTTTTCT+TGG | - | chr7_3:85668066-85668085 | Msa1132810:intron | 15.0% |
| !!! | AATCCTTTATCTTTTTAAAA+AGG | - | chr7_3:85668139-85668158 | Msa1132810:intron | 15.0% |
| !!! | AACTTTTTTCTAAATCATTT+CGG | + | chr7_3:85668271-85668290 | None:intergenic | 15.0% |
| !!! | CTTTTATTAAAAATTCGTTT+TGG | + | chr7_3:85668300-85668319 | None:intergenic | 15.0% |
| !! | TTTAAACATTATAAAAACAG+TGG | + | chr7_3:85668494-85668513 | None:intergenic | 15.0% |
| !! | ATGTAATGATGTAAAATTAT+TGG | - | chr7_3:85668648-85668667 | Msa1132810:intron | 15.0% |
| !!! | ACATCTCAAATTTTTAAAAT+TGG | + | chr7_3:85668927-85668946 | None:intergenic | 15.0% |
| !! | TACAAATATAACATTATTGT+TGG | + | chr7_3:85669862-85669881 | None:intergenic | 15.0% |
| !!! | TTAAAAATGACAAGTATTTT+AGG | + | chr7_3:85669895-85669914 | None:intergenic | 15.0% |
| !! | ATAAGTCAAAAATAAGTTAT+TGG | + | chr7_3:85670024-85670043 | None:intergenic | 15.0% |
| !! | ACACATATATATGAGTAATA+TGG | + | chr7_3:85666726-85666745 | None:intergenic | 20.0% |
| !! | ATTATTGTACCGAAAATAAT+TGG | + | chr7_3:85666805-85666824 | None:intergenic | 20.0% |
| !!! | AATAAATTACCTTTACGTTT+TGG | - | chr7_3:85667049-85667068 | Msa1132810:intron | 20.0% |
| !!! | TGTATCTATAATCTTTTTTG+AGG | - | chr7_3:85667644-85667663 | Msa1132810:intron | 20.0% |
| !!! | GTATCTATAATCTTTTTTGA+GGG | - | chr7_3:85667645-85667664 | Msa1132810:intron | 20.0% |
| !!! | TGTATCTATAATCTTTTTTG+AGG | - | chr7_3:85667644-85667663 | Msa1132810:intron | 20.0% |
| !!! | GTATCTATAATCTTTTTTGA+GGG | - | chr7_3:85667645-85667664 | Msa1132810:intron | 20.0% |
| !! | TCTTGGCTTAAATATATATT+TGG | - | chr7_3:85668083-85668102 | Msa1132810:intron | 20.0% |
| !!! | TCACCTTTTTAAAAAGATAA+AGG | + | chr7_3:85668145-85668164 | None:intergenic | 20.0% |
| !!! | ATTTTAGTCCTTATTTTCAT+TGG | - | chr7_3:85668166-85668185 | Msa1132810:intron | 20.0% |
| !! | TATCAATGCATAAAAAAAAG+TGG | - | chr7_3:85668398-85668417 | Msa1132810:intron | 20.0% |
| !!! | TCTCTTATTAAAAGTGTTAT+TGG | - | chr7_3:85668721-85668740 | Msa1132810:intron | 20.0% |
| !!! | CAAGCTAATTTTATTTGTAT+TGG | - | chr7_3:85668993-85669012 | Msa1132810:intron | 20.0% |
| !! | AATATCAAATAGTACAACTT+TGG | + | chr7_3:85669087-85669106 | None:intergenic | 20.0% |
| !!! | TTTCATTTCTATAAGCTTTT+AGG | - | chr7_3:85669159-85669178 | Msa1132810:intron | 20.0% |
| !!! | TTCATTTCTATAAGCTTTTA+GGG | - | chr7_3:85669160-85669179 | Msa1132810:intron | 20.0% |
| !!! | TATGAAATAGACTTTTAAAC+AGG | + | chr7_3:85669335-85669354 | None:intergenic | 20.0% |
| !!! | ATAATCAACATGAGTTTTTA+GGG | - | chr7_3:85669437-85669456 | Msa1132810:intron | 20.0% |
| !! | AATATAACATTATTGTTGGA+CGG | + | chr7_3:85669858-85669877 | None:intergenic | 20.0% |
| ! | GCTTCAAAAATTTCCTTAAT+TGG | + | chr7_3:85666569-85666588 | None:intergenic | 25.0% |
| ! | ACAGAAACATGTATAATCAT+GGG | + | chr7_3:85666594-85666613 | None:intergenic | 25.0% |
| !!! | GTTTTTTGAACAAGCAAAAA+TGG | + | chr7_3:85666919-85666938 | None:intergenic | 25.0% |
| !!! | TTTCTCTCTGTCTTTATTTT+TGG | - | chr7_3:85667140-85667159 | Msa1132810:intron | 25.0% |
| !!! | TTCTCTCTGTCTTTATTTTT+GGG | - | chr7_3:85667141-85667160 | Msa1132810:intron | 25.0% |
| ! | CTTTGTAAGTAAAAGTTGTT+TGG | + | chr7_3:85667400-85667419 | None:intergenic | 25.0% |
| !! | AATCAAAGAGTACAAAACAA+TGG | - | chr7_3:85667676-85667695 | Msa1132810:CDS | 25.0% |
| !! | AATCAAAGAGTACAAAACAA+TGG | - | chr7_3:85667676-85667695 | Msa1132810:CDS | 25.0% |
| ! | TACCAAAACCAATGAAAATA+AGG | + | chr7_3:85668177-85668196 | None:intergenic | 25.0% |
| !! | ATCACTCTTTAAAAAGATAG+AGG | - | chr7_3:85668215-85668234 | Msa1132810:intron | 25.0% |
| !!! | CATTTTTTTTAAATGAGTCG+CGG | + | chr7_3:85668674-85668693 | None:intergenic | 25.0% |
| ! | ACTACTTCATATTGTTCATT+TGG | - | chr7_3:85668853-85668872 | Msa1132810:intron | 25.0% |
| ! | CTACTTCATATTGTTCATTT+GGG | - | chr7_3:85668854-85668873 | Msa1132810:intron | 25.0% |
| !!! | AGAAGTTAACATTTTTTCCA+CGG | - | chr7_3:85669048-85669067 | Msa1132810:intron | 25.0% |
| !! | AAATAGTACAACTTTGGTTT+AGG | + | chr7_3:85669081-85669100 | None:intergenic | 25.0% |
| !! | GATAATCAACATGAGTTTTT+AGG | - | chr7_3:85669436-85669455 | Msa1132810:intron | 25.0% |
| ! | TCATATTTACTTAAATAGGC+CGG | - | chr7_3:85669623-85669642 | Msa1132810:intron | 25.0% |
| ! | CTCTATTTAAGAAAAAAGTC+TGG | - | chr7_3:85669728-85669747 | Msa1132810:intron | 25.0% |
| ! | ATAGACGAATAAAGCTTATA+GGG | + | chr7_3:85669817-85669836 | None:intergenic | 25.0% |
| ! | AATAGACGAATAAAGCTTAT+AGG | + | chr7_3:85669818-85669837 | None:intergenic | 25.0% |
| ! | ATATAACATTATTGTTGGAC+GGG | + | chr7_3:85669857-85669876 | None:intergenic | 25.0% |
| ! | AGGTCATTTCTGTAAAATTA+AGG | + | chr7_3:85670115-85670134 | None:intergenic | 25.0% |
| ATTGCAGAATGTCTATTATG+AGG | - | chr7_3:85666393-85666412 | Msa1132810:intron | 30.0% | |
| AATGTCTATTATGAGGATGA+TGG | - | chr7_3:85666400-85666419 | Msa1132810:intron | 30.0% | |
| GACAGAAACATGTATAATCA+TGG | + | chr7_3:85666595-85666614 | None:intergenic | 30.0% | |
| !!! | TTTTGGTGTTAAACTAGCTT+TGG | - | chr7_3:85666643-85666662 | Msa1132810:intron | 30.0% |
| GTATTATGTACCTTGAAGTT+TGG | + | chr7_3:85666897-85666916 | None:intergenic | 30.0% | |
| ! | TGCAATTTTCCAAAACGTAA+AGG | + | chr7_3:85667061-85667080 | None:intergenic | 30.0% |
| AATGAGTCCTAAGAATTGTT+CGG | + | chr7_3:85667171-85667190 | None:intergenic | 30.0% | |
| AAACAATGGATACATTGACA+CGG | - | chr7_3:85667690-85667709 | Msa1132810:CDS | 30.0% | |
| AAACAATGGATACATTGACA+CGG | - | chr7_3:85667690-85667709 | Msa1132810:CDS | 30.0% | |
| !! | TCCACAAAGGTATTTCTATA+GGG | - | chr7_3:85668043-85668062 | Msa1132810:intron | 30.0% |
| !!! | GTCCTTATTTTCATTGGTTT+TGG | - | chr7_3:85668172-85668191 | Msa1132810:intron | 30.0% |
| CGCGACTCATTTAAAAAAAA+TGG | - | chr7_3:85668672-85668691 | Msa1132810:intron | 30.0% | |
| TAAAAAAAATGGTGTGCATG+TGG | - | chr7_3:85668683-85668702 | Msa1132810:intron | 30.0% | |
| AAAAAAAATGGTGTGCATGT+GGG | - | chr7_3:85668684-85668703 | Msa1132810:intron | 30.0% | |
| !!! | GCATGTATGCTGTTTTATTA+AGG | - | chr7_3:85668876-85668895 | Msa1132810:intron | 30.0% |
| ATTAAGGAGAATTTCTTGCT+TGG | - | chr7_3:85668892-85668911 | Msa1132810:intron | 30.0% | |
| TTTCTTCATTATTGTGTGTG+TGG | - | chr7_3:85668970-85668989 | Msa1132810:intron | 30.0% | |
| !!! | GAAGTTAACATTTTTTCCAC+GGG | - | chr7_3:85669049-85669068 | Msa1132810:intron | 30.0% |
| AAACGAGCAAATTAAATGCA+TGG | + | chr7_3:85669140-85669159 | None:intergenic | 30.0% | |
| !! | TTTCTATAAGCTTTTAGGGA+TGG | - | chr7_3:85669164-85669183 | Msa1132810:intron | 30.0% |
| CTAAAAAGTAAGTCTATGAC+AGG | + | chr7_3:85669271-85669290 | None:intergenic | 30.0% | |
| !!! | CTGTCATAGACTTACTTTTT+AGG | - | chr7_3:85669269-85669288 | Msa1132810:intron | 30.0% |
| ! | CCTATTTAGCTTAATAAGTC+AGG | + | chr7_3:85669686-85669705 | None:intergenic | 30.0% |
| CCTGACTTATTAAGCTAAAT+AGG | - | chr7_3:85669683-85669702 | Msa1132810:intron | 30.0% | |
| !! | ATAGGCTTTTAAAAAAGCCT+AGG | - | chr7_3:85669701-85669720 | Msa1132810:intron | 30.0% |
| TTCTTAAATAGAGAAAGCCT+AGG | + | chr7_3:85669721-85669740 | None:intergenic | 30.0% | |
| ! | GCTTTATTCGTCTATTATGT+AGG | - | chr7_3:85669822-85669841 | Msa1132810:intron | 30.0% |
| TTTACAGAAATGACCTACTA+TGG | - | chr7_3:85670119-85670138 | Msa1132810:CDS | 30.0% | |
| ! | CATTTGCTGCAATCCAATTA+AGG | - | chr7_3:85666553-85666572 | Msa1132810:intron | 35.0% |
| TTCTGTCAAATTTCAGTTCC+TGG | - | chr7_3:85666608-85666627 | Msa1132810:intron | 35.0% | |
| ! | TAACACCAAAACTTTCGAGT+AGG | + | chr7_3:85666634-85666653 | None:intergenic | 35.0% |
| GTCAAAGTTGTTAACTCATG+TGG | - | chr7_3:85666668-85666687 | Msa1132810:intron | 35.0% | |
| ACACAATAGCATATGAAGCT+TGG | - | chr7_3:85666764-85666783 | Msa1132810:intron | 35.0% | |
| ! | TTGAAGTTTGGTGAGATACT+TGG | + | chr7_3:85666885-85666904 | None:intergenic | 35.0% |
| AAGTATCTCACCAAACTTCA+AGG | - | chr7_3:85666884-85666903 | Msa1132810:intron | 35.0% | |
| GGACATCAATGCTTTAGTTA+AGG | + | chr7_3:85666999-85667018 | None:intergenic | 35.0% | |
| ! | AAATTGAGAGGCTTTTTACC+TGG | + | chr7_3:85667123-85667142 | None:intergenic | 35.0% |
| AAAGACAGAGAGAAATTGAG+AGG | + | chr7_3:85667135-85667154 | None:intergenic | 35.0% | |
| TTACTTACAAAGTGACACAC+CGG | - | chr7_3:85667408-85667427 | Msa1132810:intron | 35.0% | |
| !! | CTCCACAAAGGTATTTCTAT+AGG | - | chr7_3:85668042-85668061 | Msa1132810:intron | 35.0% |
| TCCCTATAGAAATACCTTTG+TGG | + | chr7_3:85668047-85668066 | None:intergenic | 35.0% | |
| !! | TGGAAAGTATTGCTAGTGTT+AGG | - | chr7_3:85668418-85668437 | Msa1132810:intron | 35.0% |
| TCGTAAAAACTCAGGATCAT+TGG | + | chr7_3:85668774-85668793 | None:intergenic | 35.0% | |
| CTGCAAATTCGTAAAAACTC+AGG | + | chr7_3:85668782-85668801 | None:intergenic | 35.0% | |
| ACTTCTTGATCTTAACGAAG+AGG | + | chr7_3:85669034-85669053 | None:intergenic | 35.0% | |
| !! | AAGCTTTTAGGGATGGAAAT+AGG | - | chr7_3:85669171-85669190 | Msa1132810:intron | 35.0% |
| TTTAGGGATGGAAATAGGTT+AGG | - | chr7_3:85669176-85669195 | Msa1132810:intron | 35.0% | |
| GCTTAGGCCTTCAAAAAAAT+TGG | + | chr7_3:85669237-85669256 | None:intergenic | 35.0% | |
| ! | AGACTTTTAAACAGGCTAGT+AGG | + | chr7_3:85669327-85669346 | None:intergenic | 35.0% |
| CGAATAAAGCTTATAGGGAT+GGG | + | chr7_3:85669812-85669831 | None:intergenic | 35.0% | |
| ACGAATAAAGCTTATAGGGA+TGG | + | chr7_3:85669813-85669832 | None:intergenic | 35.0% | |
| ! | GTCTATTATGAGGATGATGG+TGG | - | chr7_3:85666403-85666422 | Msa1132810:intron | 40.0% |
| !! | TTATGAGGATGATGGTGGTT+TGG | - | chr7_3:85666408-85666427 | Msa1132810:intron | 40.0% |
| AACATCTTATCACCAGCACA+AGG | + | chr7_3:85666494-85666513 | None:intergenic | 40.0% | |
| ATTGGATTGCAGCAAATGTC+TGG | + | chr7_3:85666551-85666570 | None:intergenic | 40.0% | |
| TAATATGGTACCTTTGCAGG+AGG | + | chr7_3:85666711-85666730 | None:intergenic | 40.0% | |
| GAGTAATATGGTACCTTTGC+AGG | + | chr7_3:85666714-85666733 | None:intergenic | 40.0% | |
| AAAATTGCAGCTTCTTCTCC+AGG | - | chr7_3:85667072-85667091 | Msa1132810:intron | 40.0% | |
| GGGATTACCGAACAATTCTT+AGG | - | chr7_3:85667161-85667180 | Msa1132810:intron | 40.0% | |
| AAAGAAAACTACTCAGCCAC+CGG | + | chr7_3:85667430-85667449 | None:intergenic | 40.0% | |
| CATAAATATGGGCTCCACAA+AGG | - | chr7_3:85668030-85668049 | Msa1132810:intron | 40.0% | |
| TATGAAGTAGTGTCCAGTGA+AGG | + | chr7_3:85668844-85668863 | None:intergenic | 40.0% | |
| TTCAAAAAAATTGGCAGGCC+AGG | + | chr7_3:85669228-85669247 | None:intergenic | 40.0% | |
| !!! | TGGCCTGCCAATTTTTTTGA+AGG | - | chr7_3:85669227-85669246 | Msa1132810:intron | 40.0% |
| AGGCCTTCAAAAAAATTGGC+AGG | + | chr7_3:85669233-85669252 | None:intergenic | 40.0% | |
| !!! | TTACTTTTTAGGCCTGAACC+TGG | - | chr7_3:85669280-85669299 | Msa1132810:intron | 40.0% |
| AAAAGCCTCTTAGGCCTATT+AGG | + | chr7_3:85669649-85669668 | None:intergenic | 40.0% | |
| GGTCATTCAAAAAGCCTCTT+AGG | + | chr7_3:85669658-85669677 | None:intergenic | 40.0% | |
| AGCTTAATAAGTCAGGTCAC+AGG | + | chr7_3:85669679-85669698 | None:intergenic | 40.0% | |
| AAGCTTATAGGGATGGGAAT+AGG | + | chr7_3:85669806-85669825 | None:intergenic | 40.0% | |
| ATCTTATCACCAGCACAAGG+TGG | + | chr7_3:85666491-85666510 | None:intergenic | 45.0% | |
| GAATTGAGGTAGTCTGTGCA+TGG | + | chr7_3:85666518-85666537 | None:intergenic | 45.0% | |
| ! | AGCAATGATGGAGAAAGACC+TGG | + | chr7_3:85667093-85667112 | None:intergenic | 45.0% |
| ! | TTGAGAGGCTTTTTACCTGG+AGG | + | chr7_3:85667120-85667139 | None:intergenic | 45.0% |
| TACGAATTTGCAGCAACACG+TGG | - | chr7_3:85668789-85668808 | Msa1132810:intron | 45.0% | |
| CTTAAATAGGCCGGCCTAAT+AGG | - | chr7_3:85669632-85669651 | Msa1132810:intron | 45.0% | |
| TATAGGGATGGGAATAGGTC+AGG | + | chr7_3:85669801-85669820 | None:intergenic | 45.0% | |
| CAAATGCTTCCACCTTGTGC+TGG | - | chr7_3:85666479-85666498 | Msa1132810:intron | 50.0% | |
| ! | CTGGTGGATGAGTGGAATTG+AGG | + | chr7_3:85666532-85666551 | None:intergenic | 50.0% |
| ! | GCAAATGTCTGGTGGATGAG+TGG | + | chr7_3:85666540-85666559 | None:intergenic | 50.0% |
| GGATTGCAGCAAATGTCTGG+TGG | + | chr7_3:85666548-85666567 | None:intergenic | 50.0% | |
| ! | CCAAAACTTTCGAGTAGGCC+AGG | + | chr7_3:85666629-85666648 | None:intergenic | 50.0% |
| ! | CCTGGCCTACTCGAAAGTTT+TGG | - | chr7_3:85666626-85666645 | Msa1132810:intron | 50.0% |
| ATGGTACCTTTGCAGGAGGT+GGG | + | chr7_3:85666707-85666726 | None:intergenic | 50.0% | |
| TATGGTACCTTTGCAGGAGG+TGG | + | chr7_3:85666708-85666727 | None:intergenic | 50.0% | |
| CTTACAAAGTGACACACCGG+TGG | - | chr7_3:85667411-85667430 | Msa1132810:intron | 50.0% | |
| GCAACACGTGGAAGTGATGA+CGG | - | chr7_3:85668801-85668820 | Msa1132810:intron | 50.0% | |
| TTGGTTTAGGTAGATGCCCG+TGG | + | chr7_3:85669068-85669087 | None:intergenic | 50.0% | |
| GAAATAGGTTAGGCCGAGCT+AGG | - | chr7_3:85669186-85669205 | Msa1132810:intron | 50.0% | |
| AGGCCTTACAAAGCCTAGCT+CGG | + | chr7_3:85669202-85669221 | None:intergenic | 50.0% | |
| TAAGTCTATGACAGGCCGCA+GGG | + | chr7_3:85669263-85669282 | None:intergenic | 50.0% | |
| TACTAGGCTTTCAGAAGGCC+AGG | + | chr7_3:85669301-85669320 | None:intergenic | 50.0% | |
| ! | GGCCTTCTGAAAGCCTAGTA+CGG | - | chr7_3:85669301-85669320 | Msa1132810:intron | 50.0% |
| GAAAAAAGTCTGGCCTGACC+TGG | - | chr7_3:85669738-85669757 | Msa1132810:intron | 50.0% | |
| TTCGATCCCACCTCCTGCAA+AGG | - | chr7_3:85666698-85666717 | Msa1132810:intron | 55.0% | |
| CCTGGAGGTTGCAGCAATGA+TGG | + | chr7_3:85667105-85667124 | None:intergenic | 55.0% | |
| CCATCATTGCTGCAACCTCC+AGG | - | chr7_3:85667102-85667121 | Msa1132810:intron | 55.0% | |
| !! | ACACGTGGAAGTGATGACGG+AGG | - | chr7_3:85668804-85668823 | Msa1132810:intron | 55.0% |
| !! | TGGAAGTGATGACGGAGGAG+CGG | - | chr7_3:85668809-85668828 | Msa1132810:intron | 55.0% |
| ! | AGGCCGAGCTAGGCTTTGTA+AGG | - | chr7_3:85669196-85669215 | Msa1132810:intron | 55.0% |
| AAAATTGGCAGGCCAGGCTC+AGG | + | chr7_3:85669222-85669241 | None:intergenic | 55.0% | |
| GTAAGTCTATGACAGGCCGC+AGG | + | chr7_3:85669264-85669283 | None:intergenic | 55.0% | |
| GCTTTCAGAAGGCCAGGTTC+AGG | + | chr7_3:85669295-85669314 | None:intergenic | 55.0% | |
| GGCCGTACTAGGCTTTCAGA+AGG | + | chr7_3:85669306-85669325 | None:intergenic | 55.0% | |
| ACAGGCTAGTAGGCCGTACT+AGG | + | chr7_3:85669317-85669336 | None:intergenic | 55.0% | |
| GCCTCTTAGGCCTATTAGGC+CGG | + | chr7_3:85669645-85669664 | None:intergenic | 55.0% | |
| TCTGTCGTAGGCTAGGCTGT+AGG | - | chr7_3:85669761-85669780 | Msa1132810:intron | 55.0% | |
| !! | GGAAGTGATGACGGAGGAGC+GGG | - | chr7_3:85668810-85668829 | Msa1132810:intron | 60.0% |
| !! | GAAGTGATGACGGAGGAGCG+GGG | - | chr7_3:85668811-85668830 | Msa1132810:intron | 60.0% |
| GCGGGGATGATCACCTTCAC+TGG | - | chr7_3:85668828-85668847 | Msa1132810:intron | 60.0% | |
| ! | GGCTTTGTAAGGCCTGAGCC+TGG | - | chr7_3:85669207-85669226 | Msa1132810:intron | 60.0% |
| GCCGGCCTAATAGGCCTAAG+AGG | - | chr7_3:85669641-85669660 | Msa1132810:intron | 60.0% | |
| AGCCTACGACAGACCAGGTC+AGG | + | chr7_3:85669754-85669773 | None:intergenic | 60.0% | |
| GACCTGGTCTGTCGTAGGCT+AGG | - | chr7_3:85669754-85669773 | Msa1132810:intron | 60.0% | |
| AGCCTAGCCTACGACAGACC+AGG | + | chr7_3:85669759-85669778 | None:intergenic | 60.0% | |
| ATAGGTCAGGCCGGCCTACA+GGG | + | chr7_3:85669788-85669807 | None:intergenic | 60.0% | |
| AATAGGTCAGGCCGGCCTAC+AGG | + | chr7_3:85669789-85669808 | None:intergenic | 60.0% | |
| GGGATGGGAATAGGTCAGGC+CGG | + | chr7_3:85669797-85669816 | None:intergenic | 60.0% | |
| GAAGGCCTAAGCCTGCCCTG+CGG | - | chr7_3:85669245-85669264 | Msa1132810:intron | 65.0% | |
| TCTATGACAGGCCGCAGGGC+AGG | + | chr7_3:85669259-85669278 | None:intergenic | 65.0% | |
| GGCCTGACCTGGTCTGTCGT+AGG | - | chr7_3:85669749-85669768 | Msa1132810:intron | 65.0% | |
| GCTAGGCTGTAGGCCCCTGT+AGG | - | chr7_3:85669771-85669790 | Msa1132810:intron | 65.0% | |
| TAGGTCAGGCCGGCCTACAG+GGG | + | chr7_3:85669787-85669806 | None:intergenic | 65.0% | |
| ACAGGCCGCAGGGCAGGCTT+AGG | + | chr7_3:85669253-85669272 | None:intergenic | 70.0% | |
| GGCTGTAGGCCCCTGTAGGC+CGG | - | chr7_3:85669775-85669794 | Msa1132810:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 85666386 | 85670150 | 85666386 | ID=Msa1132810;Name=Msa1132810 |
| chr7_3 | mRNA | 85666386 | 85670150 | 85666386 | ID=Msa1132810-mRNA-1;Parent=Msa1132810;Name=Msa1132810-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0.25|0.2|0.8|0|0|5|0|138 |
| chr7_3 | exon | 85669931 | 85670150 | 85669931 | ID=Msa1132810-mRNA-1:exon:25723;Parent=Msa1132810-mRNA-1 |
| chr7_3 | exon | 85669847 | 85669912 | 85669847 | ID=Msa1132810-mRNA-1:exon:25722;Parent=Msa1132810-mRNA-1 |
| chr7_3 | exon | 85669413 | 85669454 | 85669413 | ID=Msa1132810-mRNA-1:exon:25721;Parent=Msa1132810-mRNA-1 |
| chr7_3 | exon | 85667671 | 85667734 | 85667671 | ID=Msa1132810-mRNA-1:exon:25720;Parent=Msa1132810-mRNA-1 |
| chr7_3 | exon | 85666386 | 85666410 | 85666386 | ID=Msa1132810-mRNA-1:exon:25719;Parent=Msa1132810-mRNA-1 |
| chr7_3 | CDS | 85669931 | 85670150 | 85669931 | ID=Msa1132810-mRNA-1:cds;Parent=Msa1132810-mRNA-1 |
| chr7_3 | CDS | 85669847 | 85669912 | 85669847 | ID=Msa1132810-mRNA-1:cds;Parent=Msa1132810-mRNA-1 |
| chr7_3 | CDS | 85669413 | 85669454 | 85669413 | ID=Msa1132810-mRNA-1:cds;Parent=Msa1132810-mRNA-1 |
| chr7_3 | CDS | 85667671 | 85667734 | 85667671 | ID=Msa1132810-mRNA-1:cds;Parent=Msa1132810-mRNA-1 |
| chr7_3 | CDS | 85666386 | 85666410 | 85666386 | ID=Msa1132810-mRNA-1:cds;Parent=Msa1132810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
