Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833620 | XP_013453429.1 | 80.921 | 152 | 11 | 3 | 1 | 136 | 1 | 150 | 4.19e-68 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833620 | A0A072UEE6 | 80.921 | 152 | 11 | 3 | 1 | 136 | 1 | 150 | 2.00e-68 | 213 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036810 | Msa0833620 | 0.801497 | 8.758664e-49 | -8.615850e-47 |
| Msa0754050 | Msa0833620 | 0.976592 | 4.022514e-142 | -8.615850e-47 |
| Msa0795840 | Msa0833620 | 0.891327 | 4.395470e-74 | -8.615850e-47 |
| Msa0833620 | Msa1132810 | 0.944429 | 1.982274e-103 | -8.615850e-47 |
| Msa0206370 | Msa0833620 | 0.813824 | 2.104451e-51 | -8.615850e-47 |
| Msa0523720 | Msa0833620 | 0.809399 | 1.929345e-50 | -8.615850e-47 |
| Msa0580350 | Msa0833620 | 0.915501 | 5.464807e-85 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833620 | MtrunA17_Chr5g0398841 | 80.921 | 152 | 11 | 3 | 1 | 136 | 1 | 150 | 3.85e-72 | 213 |
| Msa0833620 | MtrunA17_Chr5g0398821 | 48.387 | 155 | 59 | 6 | 1 | 138 | 1 | 151 | 2.77e-38 | 127 |
| Msa0833620 | MtrunA17_Chr5g0398831 | 43.210 | 162 | 58 | 7 | 1 | 138 | 6 | 157 | 2.11e-32 | 112 |
| Msa0833620 | MtrunA17_Chr4g0056621 | 31.690 | 142 | 79 | 4 | 6 | 131 | 1 | 140 | 1.42e-17 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTGCTGCAATCCAATTA+AGG | 0.297545 | 5_4:-6740580 | Msa0833620:CDS |
| TTTACAGAAATGACCTACTA+TGG | 0.312030 | 5_4:-6736997 | Msa0833620:intron |
| CCTGGCCTACTCGAAAGTTT+TGG | 0.354767 | 5_4:-6740507 | Msa0833620:CDS |
| CCTGGAGGTTGCAGCAATGA+TGG | 0.402054 | 5_4:+6740031 | None:intergenic |
| GACAGAAACATGTATAATCA+TGG | 0.403279 | 5_4:+6740541 | None:intergenic |
| TTATGAGGATGATGGTGGTT+TGG | 0.421436 | 5_4:-6740725 | Msa0833620:CDS |
| GGAAGTGATGACGGAGGAGC+GGG | 0.427720 | 5_4:-6738307 | Msa0833620:CDS |
| AAAATTGCAGCTTCTTCTCC+AGG | 0.461247 | 5_4:-6740061 | Msa0833620:intron |
| ATTGGATTGCAGCAAATGTC+TGG | 0.495953 | 5_4:+6740585 | None:intergenic |
| CCATCATTGCTGCAACCTCC+AGG | 0.500501 | 5_4:-6740031 | Msa0833620:intron |
| TGGAAGTGATGACGGAGGAG+CGG | 0.513346 | 5_4:-6738308 | Msa0833620:CDS |
| ATTGCAGAATGTCTATTATG+AGG | 0.514995 | 5_4:-6740740 | Msa0833620:CDS |
| GCGGGGATGATCACCTTCAC+TGG | 0.521361 | 5_4:-6738289 | Msa0833620:CDS |
| CAAATGCTTCCACCTTGTGC+TGG | 0.524026 | 5_4:-6740654 | Msa0833620:CDS |
| CCAAAACTTTCGAGTAGGCC+AGG | 0.539426 | 5_4:+6740507 | None:intergenic |
| ACAGAAACATGTATAATCAT+GGG | 0.545168 | 5_4:+6740542 | None:intergenic |
| TAACACCAAAACTTTCGAGT+AGG | 0.584719 | 5_4:+6740502 | None:intergenic |
| GCAACACGTGGAAGTGATGA+CGG | 0.593939 | 5_4:-6738316 | Msa0833620:CDS |
| AATGTCTATTATGAGGATGA+TGG | 0.602352 | 5_4:-6740733 | Msa0833620:CDS |
| CTGGTGGATGAGTGGAATTG+AGG | 0.608601 | 5_4:+6740604 | None:intergenic |
| GCAAATGTCTGGTGGATGAG+TGG | 0.618915 | 5_4:+6740596 | None:intergenic |
| TATGAAGTAGTGTCCAGTGA+AGG | 0.634695 | 5_4:+6738276 | None:intergenic |
| GTCTATTATGAGGATGATGG+TGG | 0.635774 | 5_4:-6740730 | Msa0833620:CDS |
| GTCAAAGTTGTTAACTCATG+TGG | 0.638396 | 5_4:-6740465 | Msa0833620:intron |
| AGCAATGATGGAGAAAGACC+TGG | 0.643773 | 5_4:+6740043 | None:intergenic |
| TACGAATTTGCAGCAACACG+TGG | 0.655516 | 5_4:-6738328 | Msa0833620:intron |
| AACATCTTATCACCAGCACA+AGG | 0.675106 | 5_4:+6740642 | None:intergenic |
| GAAGTGATGACGGAGGAGCG+GGG | 0.687350 | 5_4:-6738306 | Msa0833620:CDS |
| GAATTGAGGTAGTCTGTGCA+TGG | 0.688761 | 5_4:+6740618 | None:intergenic |
| ATCTTATCACCAGCACAAGG+TGG | 0.690594 | 5_4:+6740645 | None:intergenic |
| GGATTGCAGCAAATGTCTGG+TGG | 0.693607 | 5_4:+6740588 | None:intergenic |
| ACACGTGGAAGTGATGACGG+AGG | 0.768255 | 5_4:-6738313 | Msa0833620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGAATTAACATTTTTTTA+AGG | + | chr5_4:6737849-6737868 | None:intergenic | 10.0% |
| !!! | ATTGATTTATTTTTAAACTT+AGG | + | chr5_4:6737979-6737998 | None:intergenic | 10.0% |
| !! | AATAATTCCATTAAAAAAAT+AGG | - | chr5_4:6738108-6738127 | Msa0833620:intron | 10.0% |
| !! | ATAATTCCATTAAAAAAATA+GGG | - | chr5_4:6738109-6738128 | Msa0833620:intron | 10.0% |
| !!! | TTATTTCTTTTTGAAATATA+GGG | + | chr5_4:6738211-6738230 | None:intergenic | 10.0% |
| !!! | ATTATTTCTTTTTGAAATAT+AGG | + | chr5_4:6738212-6738231 | None:intergenic | 10.0% |
| !!! | TTATTTCTTTTTGAAATATA+GGG | + | chr5_4:6738211-6738230 | None:intergenic | 10.0% |
| !!! | ATTATTTCTTTTTGAAATAT+AGG | + | chr5_4:6738212-6738231 | None:intergenic | 10.0% |
| !!! | GAATTTTTAATAAAAGATAA+AGG | - | chr5_4:6738922-6738941 | Msa0833620:intron | 10.0% |
| !! | TTATTCATATTTACTTAAAT+AGG | - | chr5_4:6740237-6740256 | Msa0833620:intron | 10.0% |
| !!! | ATATATCATCCAATTATTTT+CGG | - | chr5_4:6737395-6737414 | Msa0833620:intron | 15.0% |
| !!! | TTTTAAAAGAATTTTGTCTA+CGG | - | chr5_4:6737459-6737478 | Msa0833620:intron | 15.0% |
| !!! | TTTTTTAGTAGAAAATAATC+AGG | + | chr5_4:6737622-6737641 | None:intergenic | 15.0% |
| !!! | GTAGTTTTCTTTAAATAAAT+AGG | - | chr5_4:6738040-6738059 | Msa0833620:intron | 15.0% |
| !!! | ATTTTTCCCTATTTTTTTAA+TGG | + | chr5_4:6738118-6738137 | None:intergenic | 15.0% |
| !! | ATATATCATTCTCATAAATA+TGG | - | chr5_4:6738636-6738655 | Msa0833620:intron | 15.0% |
| !! | TATATCATTCTCATAAATAT+GGG | - | chr5_4:6738637-6738656 | Msa0833620:intron | 15.0% |
| !!! | AAAATAACATACTTTTTTCT+TGG | - | chr5_4:6738684-6738703 | Msa0833620:intron | 15.0% |
| !!! | AATCCTTTATCTTTTTAAAA+AGG | - | chr5_4:6738757-6738776 | Msa0833620:intron | 15.0% |
| !!! | AACTTTTTTCTAAATCATTT+CGG | + | chr5_4:6738889-6738908 | None:intergenic | 15.0% |
| !!! | CTTTTATTAAAAATTCGTTT+TGG | + | chr5_4:6738918-6738937 | None:intergenic | 15.0% |
| !! | TTTAAACATTATAAAAACAG+TGG | + | chr5_4:6739112-6739131 | None:intergenic | 15.0% |
| !! | ATGTAATGATGTAAAATTAT+TGG | - | chr5_4:6739266-6739285 | Msa0833620:intron | 15.0% |
| !!! | ACATCTCAAATTTTTAAAAT+TGG | + | chr5_4:6739545-6739564 | None:intergenic | 15.0% |
| !! | ACAAATATAACAATTATTGT+TGG | + | chr5_4:6740480-6740499 | None:intergenic | 15.0% |
| !!! | TTAAAAATGACAAGTATTTT+AGG | + | chr5_4:6740514-6740533 | None:intergenic | 15.0% |
| !! | ATAAGTCAAAAATAAGTTAT+TGG | + | chr5_4:6740643-6740662 | None:intergenic | 15.0% |
| !! | ACACATATATATGAGTAATA+TGG | + | chr5_4:6737328-6737347 | None:intergenic | 20.0% |
| !! | ATTATTGTACCGAAAATAAT+TGG | + | chr5_4:6737407-6737426 | None:intergenic | 20.0% |
| !!! | AATAAATTACCTTTACGTTT+TGG | - | chr5_4:6737651-6737670 | Msa0833620:intron | 20.0% |
| !!! | TGTATCTATAATCTTTTTTG+AGG | - | chr5_4:6738246-6738265 | Msa0833620:intron | 20.0% |
| !!! | GTATCTATAATCTTTTTTGA+GGG | - | chr5_4:6738247-6738266 | Msa0833620:intron | 20.0% |
| !!! | TGTATCTATAATCTTTTTTG+AGG | - | chr5_4:6738246-6738265 | Msa0833620:intron | 20.0% |
| !!! | GTATCTATAATCTTTTTTGA+GGG | - | chr5_4:6738247-6738266 | Msa0833620:intron | 20.0% |
| !! | TCTTGGCTTAAATATATATT+TGG | - | chr5_4:6738701-6738720 | Msa0833620:intron | 20.0% |
| !!! | TCACCTTTTTAAAAAGATAA+AGG | + | chr5_4:6738763-6738782 | None:intergenic | 20.0% |
| !!! | ATTTTAGTCCTTATTTTCAT+TGG | - | chr5_4:6738784-6738803 | Msa0833620:intron | 20.0% |
| !! | TATCAATGCATAAAAAAAAG+TGG | - | chr5_4:6739016-6739035 | Msa0833620:intron | 20.0% |
| !!! | TCTCTTATTAAAAGTGTTAT+TGG | - | chr5_4:6739339-6739358 | Msa0833620:intron | 20.0% |
| !!! | CAAGCTAATTTTATTTGTAT+TGG | - | chr5_4:6739611-6739630 | Msa0833620:intron | 20.0% |
| !! | AATATCAAATAGTACAACTT+TGG | + | chr5_4:6739705-6739724 | None:intergenic | 20.0% |
| !!! | TTTCATTTCTATAAGCTTTT+AGG | - | chr5_4:6739777-6739796 | Msa0833620:intron | 20.0% |
| !!! | TTCATTTCTATAAGCTTTTA+GGG | - | chr5_4:6739778-6739797 | Msa0833620:intron | 20.0% |
| !!! | TATGAAATAGACTTTTAAAC+AGG | + | chr5_4:6739953-6739972 | None:intergenic | 20.0% |
| !!! | ATAATCAACATGAGTTTTTA+GGG | - | chr5_4:6740055-6740074 | Msa0833620:intron | 20.0% |
| !! | ATATAACAATTATTGTTGGA+CGG | + | chr5_4:6740476-6740495 | None:intergenic | 20.0% |
| ! | GCTTCAAAAATTTCCTTAAT+TGG | + | chr5_4:6737171-6737190 | None:intergenic | 25.0% |
| ! | ACAGAAACATGTATAATCAT+GGG | + | chr5_4:6737196-6737215 | None:intergenic | 25.0% |
| !!! | GTTTTTTGAACAAGCAAAAA+TGG | + | chr5_4:6737521-6737540 | None:intergenic | 25.0% |
| !!! | TTTCTCTCTGTCTTTATTTT+TGG | - | chr5_4:6737742-6737761 | Msa0833620:intron | 25.0% |
| !!! | TTCTCTCTGTCTTTATTTTT+GGG | - | chr5_4:6737743-6737762 | Msa0833620:intron | 25.0% |
| ! | CTTTGTAAGTAAAAGTTGTT+TGG | + | chr5_4:6738002-6738021 | None:intergenic | 25.0% |
| !! | AATCAAAGAGTACAAAACAA+TGG | - | chr5_4:6738278-6738297 | Msa0833620:CDS | 25.0% |
| !! | AATCAAAGAGTACAAAACAA+TGG | - | chr5_4:6738278-6738297 | Msa0833620:CDS | 25.0% |
| ! | TACCAAAACCAATGAAAATA+AGG | + | chr5_4:6738795-6738814 | None:intergenic | 25.0% |
| !! | ATCACTCTTTAAAAAGATAG+AGG | - | chr5_4:6738833-6738852 | Msa0833620:intron | 25.0% |
| ! | AATGATGTAAAATTATTGGC+CGG | - | chr5_4:6739270-6739289 | Msa0833620:intron | 25.0% |
| !!! | CATTTTTTTTAAATGAGTCC+CGG | + | chr5_4:6739292-6739311 | None:intergenic | 25.0% |
| ! | ACTACTTCATATTGTTCATT+TGG | - | chr5_4:6739471-6739490 | Msa0833620:intron | 25.0% |
| ! | CTACTTCATATTGTTCATTT+GGG | - | chr5_4:6739472-6739491 | Msa0833620:intron | 25.0% |
| !!! | AGAAGTTAACATTTTTTCCA+CGG | - | chr5_4:6739666-6739685 | Msa0833620:intron | 25.0% |
| !! | AAATAGTACAACTTTGGTTT+AGG | + | chr5_4:6739699-6739718 | None:intergenic | 25.0% |
| !! | GATAATCAACATGAGTTTTT+AGG | - | chr5_4:6740054-6740073 | Msa0833620:CDS | 25.0% |
| ! | TCATATTTACTTAAATAGGC+CGG | - | chr5_4:6740241-6740260 | Msa0833620:intron | 25.0% |
| ! | CTCTATTTAAGAAAAAAGTC+TGG | - | chr5_4:6740346-6740365 | Msa0833620:intron | 25.0% |
| ! | ATAGACGAATAAAGCTTATA+GGG | + | chr5_4:6740435-6740454 | None:intergenic | 25.0% |
| ! | AATAGACGAATAAAGCTTAT+AGG | + | chr5_4:6740436-6740455 | None:intergenic | 25.0% |
| ! | TATAACAATTATTGTTGGAC+GGG | + | chr5_4:6740475-6740494 | None:intergenic | 25.0% |
| ! | AGGTCATTTCTGTAAAATTA+AGG | + | chr5_4:6740734-6740753 | None:intergenic | 25.0% |
| ATTGCAGAATGTCTATTATG+AGG | - | chr5_4:6736995-6737014 | Msa0833620:intron | 30.0% | |
| AATGTCTATTATGAGGATGA+TGG | - | chr5_4:6737002-6737021 | Msa0833620:intron | 30.0% | |
| GACAGAAACATGTATAATCA+TGG | + | chr5_4:6737197-6737216 | None:intergenic | 30.0% | |
| !!! | TTTTGGTGTTAAACTAGCTT+TGG | - | chr5_4:6737245-6737264 | Msa0833620:intron | 30.0% |
| GTATTATGTACCTTGAAGTT+TGG | + | chr5_4:6737499-6737518 | None:intergenic | 30.0% | |
| ! | TGCAATTTTCCAAAACGTAA+AGG | + | chr5_4:6737663-6737682 | None:intergenic | 30.0% |
| AATGAGTCCTAAGAATTGTT+CGG | + | chr5_4:6737773-6737792 | None:intergenic | 30.0% | |
| AAACAATGGATACATTGACA+CGG | - | chr5_4:6738292-6738311 | Msa0833620:CDS | 30.0% | |
| AAACAATGGATACATTGACA+CGG | - | chr5_4:6738292-6738311 | Msa0833620:CDS | 30.0% | |
| !! | TCCACAAAGGTATTTCTATA+GGG | - | chr5_4:6738661-6738680 | Msa0833620:intron | 30.0% |
| !!! | GTCCTTATTTTCATTGGTTT+TGG | - | chr5_4:6738790-6738809 | Msa0833620:intron | 30.0% |
| ATGATGTAAAATTATTGGCC+GGG | - | chr5_4:6739271-6739290 | Msa0833620:intron | 30.0% | |
| CGGGACTCATTTAAAAAAAA+TGG | - | chr5_4:6739290-6739309 | Msa0833620:intron | 30.0% | |
| TAAAAAAAATGGTGTGCATG+TGG | - | chr5_4:6739301-6739320 | Msa0833620:intron | 30.0% | |
| AAAAAAAATGGTGTGCATGT+GGG | - | chr5_4:6739302-6739321 | Msa0833620:intron | 30.0% | |
| !!! | GCATGTATGCTGTTTTATTA+AGG | - | chr5_4:6739494-6739513 | Msa0833620:intron | 30.0% |
| ATTAAGGAGAATTTCTTGCT+TGG | - | chr5_4:6739510-6739529 | Msa0833620:intron | 30.0% | |
| TTTCTTCATTATTGTGTGTG+TGG | - | chr5_4:6739588-6739607 | Msa0833620:intron | 30.0% | |
| !!! | GAAGTTAACATTTTTTCCAC+GGG | - | chr5_4:6739667-6739686 | Msa0833620:intron | 30.0% |
| AAACGAGCAAATTAAATGCA+TGG | + | chr5_4:6739758-6739777 | None:intergenic | 30.0% | |
| !! | TTTCTATAAGCTTTTAGGGA+TGG | - | chr5_4:6739782-6739801 | Msa0833620:intron | 30.0% |
| CTAAAAAGTAAGTCTATGAC+AGG | + | chr5_4:6739889-6739908 | None:intergenic | 30.0% | |
| !!! | CTGTCATAGACTTACTTTTT+AGG | - | chr5_4:6739887-6739906 | Msa0833620:intron | 30.0% |
| ! | CCTATTTAGCTTAATAAGTC+AGG | + | chr5_4:6740304-6740323 | None:intergenic | 30.0% |
| CCTGACTTATTAAGCTAAAT+AGG | - | chr5_4:6740301-6740320 | Msa0833620:intron | 30.0% | |
| !! | ATAGGCTTTTAAAAAAGCCT+AGG | - | chr5_4:6740319-6740338 | Msa0833620:intron | 30.0% |
| TTCTTAAATAGAGAAAGCCT+AGG | + | chr5_4:6740339-6740358 | None:intergenic | 30.0% | |
| ! | GCTTTATTCGTCTATTATGT+AGG | - | chr5_4:6740440-6740459 | Msa0833620:intron | 30.0% |
| TTTACAGAAATGACCTACTA+TGG | - | chr5_4:6740738-6740757 | Msa0833620:CDS | 30.0% | |
| ! | CATTTGCTGCAATCCAATTA+AGG | - | chr5_4:6737155-6737174 | Msa0833620:intron | 35.0% |
| TTCTGTCAAATTTCAGTTCC+TGG | - | chr5_4:6737210-6737229 | Msa0833620:intron | 35.0% | |
| ! | TAACACCAAAACTTTCGAGT+AGG | + | chr5_4:6737236-6737255 | None:intergenic | 35.0% |
| GTCAAAGTTGTTAACTCATG+TGG | - | chr5_4:6737270-6737289 | Msa0833620:intron | 35.0% | |
| ACACAATAGCATATGAAGCT+TGG | - | chr5_4:6737366-6737385 | Msa0833620:intron | 35.0% | |
| ! | TTGAAGTTTGGTGAGATACT+TGG | + | chr5_4:6737487-6737506 | None:intergenic | 35.0% |
| AAGTATCTCACCAAACTTCA+AGG | - | chr5_4:6737486-6737505 | Msa0833620:intron | 35.0% | |
| GGACATCAATGCTTTAGTTA+AGG | + | chr5_4:6737601-6737620 | None:intergenic | 35.0% | |
| ! | AAATTGAGAGGCTTTTTACC+TGG | + | chr5_4:6737725-6737744 | None:intergenic | 35.0% |
| AAAGACAGAGAGAAATTGAG+AGG | + | chr5_4:6737737-6737756 | None:intergenic | 35.0% | |
| TTACTTACAAAGTGACACAC+CGG | - | chr5_4:6738010-6738029 | Msa0833620:intron | 35.0% | |
| !! | CTCCACAAAGGTATTTCTAT+AGG | - | chr5_4:6738660-6738679 | Msa0833620:intron | 35.0% |
| TCCCTATAGAAATACCTTTG+TGG | + | chr5_4:6738665-6738684 | None:intergenic | 35.0% | |
| !! | TGGAAAGTATTGCTAGTGTT+AGG | - | chr5_4:6739036-6739055 | Msa0833620:intron | 35.0% |
| TCGTAAAAACTCAGGATCAT+TGG | + | chr5_4:6739392-6739411 | None:intergenic | 35.0% | |
| CTGCAAATTCGTAAAAACTC+AGG | + | chr5_4:6739400-6739419 | None:intergenic | 35.0% | |
| ACTTCTTGATCTTAACGAAG+AGG | + | chr5_4:6739652-6739671 | None:intergenic | 35.0% | |
| !! | AAGCTTTTAGGGATGGAAAT+AGG | - | chr5_4:6739789-6739808 | Msa0833620:intron | 35.0% |
| TTTAGGGATGGAAATAGGTT+AGG | - | chr5_4:6739794-6739813 | Msa0833620:intron | 35.0% | |
| GCTTAGGCCTTCAAAAAAAT+TGG | + | chr5_4:6739855-6739874 | None:intergenic | 35.0% | |
| ! | AGACTTTTAAACAGGCTAGT+AGG | + | chr5_4:6739945-6739964 | None:intergenic | 35.0% |
| CGAATAAAGCTTATAGGGAT+GGG | + | chr5_4:6740430-6740449 | None:intergenic | 35.0% | |
| ACGAATAAAGCTTATAGGGA+TGG | + | chr5_4:6740431-6740450 | None:intergenic | 35.0% | |
| ! | GTCTATTATGAGGATGATGG+TGG | - | chr5_4:6737005-6737024 | Msa0833620:intron | 40.0% |
| !! | TTATGAGGATGATGGTGGTT+TGG | - | chr5_4:6737010-6737029 | Msa0833620:intron | 40.0% |
| AACATCTTATCACCAGCACA+AGG | + | chr5_4:6737096-6737115 | None:intergenic | 40.0% | |
| ATTGGATTGCAGCAAATGTC+TGG | + | chr5_4:6737153-6737172 | None:intergenic | 40.0% | |
| TAATATGGTACCTTTGCAGG+AGG | + | chr5_4:6737313-6737332 | None:intergenic | 40.0% | |
| GAGTAATATGGTACCTTTGC+AGG | + | chr5_4:6737316-6737335 | None:intergenic | 40.0% | |
| AAAATTGCAGCTTCTTCTCC+AGG | - | chr5_4:6737674-6737693 | Msa0833620:intron | 40.0% | |
| GGGATTACCGAACAATTCTT+AGG | - | chr5_4:6737763-6737782 | Msa0833620:intron | 40.0% | |
| AAAGAAAACTACTCAGCCAC+CGG | + | chr5_4:6738032-6738051 | None:intergenic | 40.0% | |
| CATAAATATGGGCTCCACAA+AGG | - | chr5_4:6738648-6738667 | Msa0833620:intron | 40.0% | |
| TATGAAGTAGTGTCCAGTGA+AGG | + | chr5_4:6739462-6739481 | None:intergenic | 40.0% | |
| TTCAAAAAAATTGGCAGGCC+AGG | + | chr5_4:6739846-6739865 | None:intergenic | 40.0% | |
| !!! | TGGCCTGCCAATTTTTTTGA+AGG | - | chr5_4:6739845-6739864 | Msa0833620:intron | 40.0% |
| AGGCCTTCAAAAAAATTGGC+AGG | + | chr5_4:6739851-6739870 | None:intergenic | 40.0% | |
| !!! | TTACTTTTTAGGCCTGAACC+TGG | - | chr5_4:6739898-6739917 | Msa0833620:intron | 40.0% |
| AAAAGCCTCTTAGGCCTATT+AGG | + | chr5_4:6740267-6740286 | None:intergenic | 40.0% | |
| GGTCATTCAAAAAGCCTCTT+AGG | + | chr5_4:6740276-6740295 | None:intergenic | 40.0% | |
| AGCTTAATAAGTCAGGTCAC+AGG | + | chr5_4:6740297-6740316 | None:intergenic | 40.0% | |
| AAGCTTATAGGGATGGGAAT+AGG | + | chr5_4:6740424-6740443 | None:intergenic | 40.0% | |
| ATCTTATCACCAGCACAAGG+TGG | + | chr5_4:6737093-6737112 | None:intergenic | 45.0% | |
| GAATTGAGGTAGTCTGTGCA+TGG | + | chr5_4:6737120-6737139 | None:intergenic | 45.0% | |
| ! | AGCAATGATGGAGAAAGACC+TGG | + | chr5_4:6737695-6737714 | None:intergenic | 45.0% |
| ! | TTGAGAGGCTTTTTACCTGG+AGG | + | chr5_4:6737722-6737741 | None:intergenic | 45.0% |
| TACGAATTTGCAGCAACACG+TGG | - | chr5_4:6739407-6739426 | Msa0833620:intron | 45.0% | |
| CTTAAATAGGCCGGCCTAAT+AGG | - | chr5_4:6740250-6740269 | Msa0833620:intron | 45.0% | |
| TATAGGGATGGGAATAGGTC+AGG | + | chr5_4:6740419-6740438 | None:intergenic | 45.0% | |
| CAAATGCTTCCACCTTGTGC+TGG | - | chr5_4:6737081-6737100 | Msa0833620:intron | 50.0% | |
| ! | CTGGTGGATGAGTGGAATTG+AGG | + | chr5_4:6737134-6737153 | None:intergenic | 50.0% |
| ! | GCAAATGTCTGGTGGATGAG+TGG | + | chr5_4:6737142-6737161 | None:intergenic | 50.0% |
| GGATTGCAGCAAATGTCTGG+TGG | + | chr5_4:6737150-6737169 | None:intergenic | 50.0% | |
| ! | CCAAAACTTTCGAGTAGGCC+AGG | + | chr5_4:6737231-6737250 | None:intergenic | 50.0% |
| ! | CCTGGCCTACTCGAAAGTTT+TGG | - | chr5_4:6737228-6737247 | Msa0833620:intron | 50.0% |
| ATGGTACCTTTGCAGGAGGT+GGG | + | chr5_4:6737309-6737328 | None:intergenic | 50.0% | |
| TATGGTACCTTTGCAGGAGG+TGG | + | chr5_4:6737310-6737329 | None:intergenic | 50.0% | |
| CTTACAAAGTGACACACCGG+TGG | - | chr5_4:6738013-6738032 | Msa0833620:intron | 50.0% | |
| GCAACACGTGGAAGTGATGA+CGG | - | chr5_4:6739419-6739438 | Msa0833620:intron | 50.0% | |
| TTGGTTTAGGTAGATGCCCG+TGG | + | chr5_4:6739686-6739705 | None:intergenic | 50.0% | |
| GAAATAGGTTAGGCCGAGCT+AGG | - | chr5_4:6739804-6739823 | Msa0833620:intron | 50.0% | |
| AGGCCTTACAAAGCCTAGCT+CGG | + | chr5_4:6739820-6739839 | None:intergenic | 50.0% | |
| TAAGTCTATGACAGGCCGCA+GGG | + | chr5_4:6739881-6739900 | None:intergenic | 50.0% | |
| TACTAGGCTTTCAGAAGGCC+AGG | + | chr5_4:6739919-6739938 | None:intergenic | 50.0% | |
| ! | GGCCTTCTGAAAGCCTAGTA+CGG | - | chr5_4:6739919-6739938 | Msa0833620:intron | 50.0% |
| GAAAAAAGTCTGGCCTGACC+TGG | - | chr5_4:6740356-6740375 | Msa0833620:intron | 50.0% | |
| TTCGATCCCACCTCCTGCAA+AGG | - | chr5_4:6737300-6737319 | Msa0833620:intron | 55.0% | |
| CCTGGAGGTTGCAGCAATGA+TGG | + | chr5_4:6737707-6737726 | None:intergenic | 55.0% | |
| CCATCATTGCTGCAACCTCC+AGG | - | chr5_4:6737704-6737723 | Msa0833620:intron | 55.0% | |
| !! | ACACGTGGAAGTGATGACGG+AGG | - | chr5_4:6739422-6739441 | Msa0833620:intron | 55.0% |
| !! | TGGAAGTGATGACGGAGGAG+CGG | - | chr5_4:6739427-6739446 | Msa0833620:intron | 55.0% |
| ! | AGGCCGAGCTAGGCTTTGTA+AGG | - | chr5_4:6739814-6739833 | Msa0833620:intron | 55.0% |
| AAAATTGGCAGGCCAGGCTC+AGG | + | chr5_4:6739840-6739859 | None:intergenic | 55.0% | |
| GTAAGTCTATGACAGGCCGC+AGG | + | chr5_4:6739882-6739901 | None:intergenic | 55.0% | |
| GCTTTCAGAAGGCCAGGTTC+AGG | + | chr5_4:6739913-6739932 | None:intergenic | 55.0% | |
| GGCCGTACTAGGCTTTCAGA+AGG | + | chr5_4:6739924-6739943 | None:intergenic | 55.0% | |
| ACAGGCTAGTAGGCCGTACT+AGG | + | chr5_4:6739935-6739954 | None:intergenic | 55.0% | |
| GCCTCTTAGGCCTATTAGGC+CGG | + | chr5_4:6740263-6740282 | None:intergenic | 55.0% | |
| TCTGTCGTAGGCTAGGCTGT+AGG | - | chr5_4:6740379-6740398 | Msa0833620:intron | 55.0% | |
| !! | GGAAGTGATGACGGAGGAGC+GGG | - | chr5_4:6739428-6739447 | Msa0833620:intron | 60.0% |
| !! | GAAGTGATGACGGAGGAGCG+GGG | - | chr5_4:6739429-6739448 | Msa0833620:intron | 60.0% |
| GCGGGGATGATCACCTTCAC+TGG | - | chr5_4:6739446-6739465 | Msa0833620:intron | 60.0% | |
| ! | GGCTTTGTAAGGCCTGAGCC+TGG | - | chr5_4:6739825-6739844 | Msa0833620:intron | 60.0% |
| GCCGGCCTAATAGGCCTAAG+AGG | - | chr5_4:6740259-6740278 | Msa0833620:intron | 60.0% | |
| AGCCTACGACAGACCAGGTC+AGG | + | chr5_4:6740372-6740391 | None:intergenic | 60.0% | |
| GACCTGGTCTGTCGTAGGCT+AGG | - | chr5_4:6740372-6740391 | Msa0833620:intron | 60.0% | |
| AGCCTAGCCTACGACAGACC+AGG | + | chr5_4:6740377-6740396 | None:intergenic | 60.0% | |
| ATAGGTCAGGCCGGCCTACA+GGG | + | chr5_4:6740406-6740425 | None:intergenic | 60.0% | |
| AATAGGTCAGGCCGGCCTAC+AGG | + | chr5_4:6740407-6740426 | None:intergenic | 60.0% | |
| GGGATGGGAATAGGTCAGGC+CGG | + | chr5_4:6740415-6740434 | None:intergenic | 60.0% | |
| GAAGGCCTAAGCCTGCCCTG+CGG | - | chr5_4:6739863-6739882 | Msa0833620:intron | 65.0% | |
| TCTATGACAGGCCGCAGGGC+AGG | + | chr5_4:6739877-6739896 | None:intergenic | 65.0% | |
| GGCCTGACCTGGTCTGTCGT+AGG | - | chr5_4:6740367-6740386 | Msa0833620:intron | 65.0% | |
| GCTAGGCTGTAGGCCCCTGT+AGG | - | chr5_4:6740389-6740408 | Msa0833620:intron | 65.0% | |
| TAGGTCAGGCCGGCCTACAG+GGG | + | chr5_4:6740405-6740424 | None:intergenic | 65.0% | |
| ACAGGCCGCAGGGCAGGCTT+AGG | + | chr5_4:6739871-6739890 | None:intergenic | 70.0% | |
| GGCTGTAGGCCCCTGTAGGC+CGG | - | chr5_4:6740393-6740412 | Msa0833620:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 6736988 | 6740769 | 6736988 | ID=Msa0833620;Name=Msa0833620 |
| chr5_4 | mRNA | 6736988 | 6740769 | 6736988 | ID=Msa0833620-mRNA-1;Parent=Msa0833620;Name=Msa0833620-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0.25|0.2|0.8|0|0|5|0|138 |
| chr5_4 | exon | 6740550 | 6740769 | 6740550 | ID=Msa0833620-mRNA-1:exon:2990;Parent=Msa0833620-mRNA-1 |
| chr5_4 | exon | 6740466 | 6740531 | 6740466 | ID=Msa0833620-mRNA-1:exon:2989;Parent=Msa0833620-mRNA-1 |
| chr5_4 | exon | 6740032 | 6740073 | 6740032 | ID=Msa0833620-mRNA-1:exon:2988;Parent=Msa0833620-mRNA-1 |
| chr5_4 | exon | 6738274 | 6738337 | 6738274 | ID=Msa0833620-mRNA-1:exon:2987;Parent=Msa0833620-mRNA-1 |
| chr5_4 | exon | 6736988 | 6737012 | 6736988 | ID=Msa0833620-mRNA-1:exon:2986;Parent=Msa0833620-mRNA-1 |
| chr5_4 | CDS | 6740550 | 6740769 | 6740550 | ID=Msa0833620-mRNA-1:cds;Parent=Msa0833620-mRNA-1 |
| chr5_4 | CDS | 6740466 | 6740531 | 6740466 | ID=Msa0833620-mRNA-1:cds;Parent=Msa0833620-mRNA-1 |
| chr5_4 | CDS | 6740032 | 6740073 | 6740032 | ID=Msa0833620-mRNA-1:cds;Parent=Msa0833620-mRNA-1 |
| chr5_4 | CDS | 6738274 | 6738337 | 6738274 | ID=Msa0833620-mRNA-1:cds;Parent=Msa0833620-mRNA-1 |
| chr5_4 | CDS | 6736988 | 6737012 | 6736988 | ID=Msa0833620-mRNA-1:cds;Parent=Msa0833620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
