Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795840 | XP_013453429.1 | 77.632 | 152 | 9 | 2 | 1 | 128 | 6 | 156 | 1.72e-65 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795840 | A0A072UEE6 | 77.632 | 152 | 9 | 2 | 1 | 128 | 6 | 156 | 8.23e-66 | 206 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0754050 | Msa0795840 | 0.877746 | 4.906935e-69 | -8.615850e-47 |
| Msa0795840 | Msa0833620 | 0.891327 | 4.395470e-74 | -8.615850e-47 |
| Msa0795840 | Msa1132810 | 0.892711 | 1.233553e-74 | -8.615850e-47 |
| Msa0580350 | Msa0795840 | 0.872570 | 2.873489e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795840 | MtrunA17_Chr5g0398841 | 77.632 | 152 | 9 | 2 | 1 | 128 | 6 | 156 | 1.59e-69 | 206 |
| Msa0795840 | MtrunA17_Chr5g0398821 | 52.000 | 150 | 43 | 6 | 5 | 128 | 9 | 155 | 4.68e-40 | 131 |
| Msa0795840 | MtrunA17_Chr5g0398831 | 44.231 | 156 | 49 | 8 | 5 | 127 | 10 | 160 | 1.61e-27 | 99.4 |
| Msa0795840 | MtrunA17_Chr4g0056621 | 32.468 | 154 | 72 | 7 | 1 | 128 | 1 | 148 | 1.39e-17 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTCAAATTTCAGTTCC+TGG | 0.242271 | 5_3:-7874482 | Msa0795840:CDS |
| ACTTCATATTGTTGTTCATT+TGG | 0.271537 | 5_3:-7872354 | Msa0795840:CDS |
| CATTTGCTGCAATCCAATTA+AGG | 0.297545 | 5_3:-7874537 | Msa0795840:CDS |
| GCATGTATGTTGTTTCATTA+AGG | 0.310653 | 5_3:-7872331 | Msa0795840:exon |
| CTTCATATTGTTGTTCATTT+GGG | 0.320896 | 5_3:-7872353 | Msa0795840:CDS |
| CCTGGCCTACTCGAAAGTTT+TGG | 0.354767 | 5_3:-7874464 | Msa0795840:intron |
| CCTGGAGGTTGCAGCAATGA+TGG | 0.402054 | 5_3:+7873993 | None:intergenic |
| GACAGAAACATGTATAATCA+TGG | 0.403279 | 5_3:+7874498 | None:intergenic |
| TTATGAGGATGATGGTGGTT+TGG | 0.421436 | 5_3:-7874682 | Msa0795840:CDS |
| GGAAGTGATGACGGAGGAGC+GGG | 0.427720 | 5_3:-7872400 | Msa0795840:CDS |
| AAAATTGCAGCTTCTTCTCC+AGG | 0.461247 | 5_3:-7874023 | Msa0795840:intron |
| ATTAAGGAGAATTTCTTGCT+TGG | 0.461758 | 5_3:-7872315 | Msa0795840:exon |
| ATTGGATTGCAGCAAATGTC+TGG | 0.495953 | 5_3:+7874542 | None:intergenic |
| CCATCATTGCTGCAACCTCC+AGG | 0.500501 | 5_3:-7873993 | Msa0795840:intron |
| TGGAAGTGATGACGGAGGAG+CGG | 0.513346 | 5_3:-7872401 | Msa0795840:CDS |
| ATTGCAGAATGTCTATTATG+AGG | 0.514995 | 5_3:-7874697 | None:intergenic |
| GCGGGGATGATCACCTTCAC+TGG | 0.521361 | 5_3:-7872382 | Msa0795840:CDS |
| CAAATGCTTCCACCTTGTGC+TGG | 0.524026 | 5_3:-7874611 | Msa0795840:CDS |
| CCAAAACTTTCGAGTAGGCC+AGG | 0.539426 | 5_3:+7874464 | None:intergenic |
| ACAGAAACATGTATAATCAT+GGG | 0.545168 | 5_3:+7874499 | None:intergenic |
| TAACACCAAAACTTTCGAGT+AGG | 0.584719 | 5_3:+7874459 | None:intergenic |
| GCAACACGTGGAAGTGATGA+CGG | 0.593939 | 5_3:-7872409 | Msa0795840:CDS |
| ATTTCTTGATCTTAACGAAG+AGG | 0.601751 | 5_3:+7872174 | None:intergenic |
| AATGTCTATTATGAGGATGA+TGG | 0.602352 | 5_3:-7874690 | Msa0795840:CDS |
| CTGGTGGATGAGTGGAATTG+AGG | 0.608601 | 5_3:+7874561 | None:intergenic |
| GCAAATGTCTGGTGGATGAG+TGG | 0.618915 | 5_3:+7874553 | None:intergenic |
| TATGAAGTAGTGTCCAGTGA+AGG | 0.634695 | 5_3:+7872369 | None:intergenic |
| GTCTATTATGAGGATGATGG+TGG | 0.635774 | 5_3:-7874687 | Msa0795840:CDS |
| TTGGTTTAGATAGTTGTCCG+TGG | 0.641346 | 5_3:+7872140 | None:intergenic |
| AGCAATGATGGAGAAAGACC+TGG | 0.643773 | 5_3:+7874005 | None:intergenic |
| TACGAATTTGCAGCAACACG+TGG | 0.655516 | 5_3:-7872421 | Msa0795840:intron |
| AACATCTTATCACCAGCACA+AGG | 0.675106 | 5_3:+7874599 | None:intergenic |
| GAAGTGATGACGGAGGAGCG+GGG | 0.687350 | 5_3:-7872399 | Msa0795840:CDS |
| GAATTGAGGTAGTCTGTGCA+TGG | 0.688761 | 5_3:+7874575 | None:intergenic |
| ATCTTATCACCAGCACAAGG+TGG | 0.690594 | 5_3:+7874602 | None:intergenic |
| GGATTGCAGCAAATGTCTGG+TGG | 0.693607 | 5_3:+7874545 | None:intergenic |
| ACACGTGGAAGTGATGACGG+AGG | 0.768255 | 5_3:-7872406 | Msa0795840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATTTATTTTTAAACTT+AGG | + | chr5_3:7873120-7873139 | None:intergenic | 10.0% |
| !! | ATAATTCCATTAAAAAAATA+AGG | - | chr5_3:7873250-7873269 | Msa0795840:intron | 10.0% |
| !!! | TTTTTTCCTTATTTTTTTAA+TGG | + | chr5_3:7873259-7873278 | None:intergenic | 10.0% |
| !!! | TTATTTCTATTTGAAATATA+GGG | + | chr5_3:7873353-7873372 | None:intergenic | 10.0% |
| !!! | ATTATTTCTATTTGAAATAT+AGG | + | chr5_3:7873354-7873373 | None:intergenic | 10.0% |
| !! | AAAAAAAATTCTCATAAATA+TGG | - | chr5_3:7873629-7873648 | Msa0795840:intron | 10.0% |
| !!! | CTTTTATTAAAAATTCATTT+TGG | + | chr5_3:7873920-7873939 | None:intergenic | 10.0% |
| !!! | GAATTTTTAATAAAAGATAA+AGG | - | chr5_3:7873924-7873943 | Msa0795840:intron | 10.0% |
| !! | TTTAAACATTATAAAAACAA+TGG | + | chr5_3:7874116-7874135 | None:intergenic | 10.0% |
| !!! | ATATATCATCCAATTATTTT+CGG | - | chr5_3:7872541-7872560 | Msa0795840:intron | 15.0% |
| !!! | TTTTAAAAGAATTTTGTCTA+CGG | - | chr5_3:7872605-7872624 | Msa0795840:intron | 15.0% |
| !!! | TTTTTTAGTAGAAAATAATC+AGG | + | chr5_3:7872762-7872781 | None:intergenic | 15.0% |
| !!! | GTAGTTTTCTTTAAATAAAT+AGG | - | chr5_3:7873181-7873200 | Msa0795840:intron | 15.0% |
| !!! | TTTTTTTAAAATAGACGAAA+TGG | + | chr5_3:7873610-7873629 | None:intergenic | 15.0% |
| !!! | AAATAACATACTTTTTTCTT+CGG | - | chr5_3:7873681-7873700 | Msa0795840:intron | 15.0% |
| !!! | AATCCTTTATCTTTTTAAAA+AGG | - | chr5_3:7873759-7873778 | Msa0795840:intron | 15.0% |
| !!! | AACTTTTTTCTAAATCATTT+TGG | + | chr5_3:7873891-7873910 | None:intergenic | 15.0% |
| !!! | ACATCTCAAATTTTTAAAAT+TGG | + | chr5_3:7874557-7874576 | None:intergenic | 15.0% |
| !! | ACACATATATATGAGTAATA+TGG | + | chr5_3:7872473-7872492 | None:intergenic | 20.0% |
| !!! | TGTGTGAAATTTTAAAAACA+TGG | - | chr5_3:7872488-7872507 | Msa0795840:intron | 20.0% |
| !! | ATTATTGTACCGAAAATAAT+TGG | + | chr5_3:7872553-7872572 | None:intergenic | 20.0% |
| !!! | AATAAATTACCTTTACGTTT+TGG | - | chr5_3:7872791-7872810 | Msa0795840:intron | 20.0% |
| !! | TAAGATAATAGTTAAAAGAC+AGG | - | chr5_3:7873285-7873304 | Msa0795840:intron | 20.0% |
| !!! | TGTATCTATAATCTTTTTTG+AGG | - | chr5_3:7873388-7873407 | Msa0795840:intron | 20.0% |
| !!! | GTATCTATAATCTTTTTTGA+GGG | - | chr5_3:7873389-7873408 | Msa0795840:intron | 20.0% |
| !!! | TCACCTTTTTAAAAAGATAA+AGG | + | chr5_3:7873765-7873784 | None:intergenic | 20.0% |
| !!! | ATTTTAGTCCTTATTTTCAT+TGG | - | chr5_3:7873786-7873805 | Msa0795840:intron | 20.0% |
| !!! | ATCACTCTTTAAAAAGATAA+AGG | - | chr5_3:7873835-7873854 | Msa0795840:intron | 20.0% |
| !! | TATCATATGCATAAAAAAAG+TGG | - | chr5_3:7874020-7874039 | Msa0795840:intron | 20.0% |
| !! | AATGATGTAAAATTATTAGC+CGG | - | chr5_3:7874273-7874292 | Msa0795840:intron | 20.0% |
| !!! | ATTTTTTTTAAAATGAGTCC+CGG | + | chr5_3:7874295-7874314 | None:intergenic | 20.0% |
| !!! | CAAGCTAATTTTATTTGTAT+TGG | - | chr5_3:7874624-7874643 | Msa0795840:CDS | 20.0% |
| ! | GCTTCAAAAATTTCCTTAAT+TGG | + | chr5_3:7872316-7872335 | None:intergenic | 25.0% |
| ! | ACAGAAACATGTATAATCAT+GGG | + | chr5_3:7872341-7872360 | None:intergenic | 25.0% |
| !!! | GTTTTTTGAACAAGCAAAAA+TGG | + | chr5_3:7872667-7872686 | None:intergenic | 25.0% |
| !!! | TTTCTCTCTGTCTTTATTTT+TGG | - | chr5_3:7872882-7872901 | Msa0795840:intron | 25.0% |
| !!! | TTCTCTCTGTCTTTATTTTT+GGG | - | chr5_3:7872883-7872902 | Msa0795840:intron | 25.0% |
| ! | CTTTGTAAGTAAAAGTTGTT+TGG | + | chr5_3:7873143-7873162 | None:intergenic | 25.0% |
| !! | AATCAAAGAGTACAAAACAA+TGG | - | chr5_3:7873420-7873439 | Msa0795840:intron | 25.0% |
| ! | GCTTGGCTTAAATATATATT+TGG | - | chr5_3:7873707-7873726 | Msa0795840:intron | 25.0% |
| ! | TACCAAAACCAATGAAAATA+AGG | + | chr5_3:7873797-7873816 | None:intergenic | 25.0% |
| ! | ATGATGTAAAATTATTAGCC+GGG | - | chr5_3:7874274-7874293 | Msa0795840:intron | 25.0% |
| !!! | GGGACTCATTTTAAAAAAAA+TGG | - | chr5_3:7874294-7874313 | Msa0795840:intron | 25.0% |
| !!! | TCTCTTAGTAAAAGTGTTAT+TGG | - | chr5_3:7874343-7874362 | Msa0795840:intron | 25.0% |
| !! | ACTTCATATTGTTGTTCATT+TGG | - | chr5_3:7874483-7874502 | Msa0795840:CDS | 25.0% |
| !! | CTTCATATTGTTGTTCATTT+GGG | - | chr5_3:7874484-7874503 | Msa0795840:CDS | 25.0% |
| !!! | TTTTTTCATTATTGTGTGTG+TGG | - | chr5_3:7874601-7874620 | Msa0795840:CDS | 25.0% |
| !!! | AGAAATTGACATTTTTTCCA+CGG | - | chr5_3:7874680-7874699 | Msa0795840:CDS | 25.0% |
| GACAGAAACATGTATAATCA+TGG | + | chr5_3:7872342-7872361 | None:intergenic | 30.0% | |
| !!! | TTTTGGTGTTAAACTAGCTT+TGG | - | chr5_3:7872390-7872409 | Msa0795840:CDS | 30.0% |
| GTATTATGTACCTTGAAGTT+TGG | + | chr5_3:7872645-7872664 | None:intergenic | 30.0% | |
| ! | TGCAATTTTCCAAAACGTAA+AGG | + | chr5_3:7872803-7872822 | None:intergenic | 30.0% |
| AATGAGTCCTAAGAATTGTT+TGG | + | chr5_3:7872913-7872932 | None:intergenic | 30.0% | |
| AAACAATGGATACATTGACA+CGG | - | chr5_3:7873434-7873453 | Msa0795840:intron | 30.0% | |
| !!! | TCCACAAAGGTATTTTTCTA+GGG | - | chr5_3:7873657-7873676 | Msa0795840:intron | 30.0% |
| !!! | GTCCTTATTTTCATTGGTTT+TGG | - | chr5_3:7873792-7873811 | Msa0795840:intron | 30.0% |
| TAAAAAAAATGGTGTGCATG+TGG | - | chr5_3:7874305-7874324 | Msa0795840:intron | 30.0% | |
| AAAAAAAATGGTGTGCATGT+GGG | - | chr5_3:7874306-7874325 | Msa0795840:intron | 30.0% | |
| GTAAAAACTCAGGATCATAT+TGG | + | chr5_3:7874399-7874418 | None:intergenic | 30.0% | |
| !! | GCATGTATGTTGTTTCATTA+AGG | - | chr5_3:7874506-7874525 | Msa0795840:CDS | 30.0% |
| ATTAAGGAGAATTTCTTGCT+TGG | - | chr5_3:7874522-7874541 | Msa0795840:CDS | 30.0% | |
| ATTTCTTGATCTTAACGAAG+AGG | + | chr5_3:7874666-7874685 | None:intergenic | 30.0% | |
| ! | CATTTGCTGCAATCCAATTA+AGG | - | chr5_3:7872300-7872319 | Msa0795840:three_prime_UTR | 35.0% |
| TTCTGTCAAATTTCAGTTCC+TGG | - | chr5_3:7872355-7872374 | Msa0795840:CDS | 35.0% | |
| ! | TAACACCAAAACTTTCGAGT+AGG | + | chr5_3:7872381-7872400 | None:intergenic | 35.0% |
| GTCAAAGTTGTTAACTCATG+TGG | - | chr5_3:7872415-7872434 | Msa0795840:intron | 35.0% | |
| CACAATAGCATATGAAGCTT+TGG | - | chr5_3:7872512-7872531 | Msa0795840:intron | 35.0% | |
| ! | TTGAAGTTTGGTGAGATACT+TGG | + | chr5_3:7872633-7872652 | None:intergenic | 35.0% |
| AAGTATCTCACCAAACTTCA+AGG | - | chr5_3:7872632-7872651 | Msa0795840:intron | 35.0% | |
| GGACATCAATGCTTTAGTTA+AGG | + | chr5_3:7872741-7872760 | None:intergenic | 35.0% | |
| ! | AAATTGAGAGGCTTTTTACC+TGG | + | chr5_3:7872865-7872884 | None:intergenic | 35.0% |
| AAAGACAGAGAGAAATTGAG+AGG | + | chr5_3:7872877-7872896 | None:intergenic | 35.0% | |
| GGGATTACCAAACAATTCTT+AGG | - | chr5_3:7872903-7872922 | Msa0795840:intron | 35.0% | |
| TTACTTACAAAGTGACACAC+CGG | - | chr5_3:7873151-7873170 | Msa0795840:intron | 35.0% | |
| GGCAAAATGCTGAAATTGTT+AGG | - | chr5_3:7873522-7873541 | Msa0795840:intron | 35.0% | |
| AAATGCTGAAATTGTTAGGC+CGG | - | chr5_3:7873526-7873545 | Msa0795840:intron | 35.0% | |
| CATTATAAACTCACAAGTGG+AGG | + | chr5_3:7873581-7873600 | None:intergenic | 35.0% | |
| CTCCACTTGTGAGTTTATAA+TGG | - | chr5_3:7873579-7873598 | Msa0795840:intron | 35.0% | |
| AGCCATTATAAACTCACAAG+TGG | + | chr5_3:7873584-7873603 | None:intergenic | 35.0% | |
| CTAGAAAAATACCTTTGTGG+AGG | + | chr5_3:7873658-7873677 | None:intergenic | 35.0% | |
| !!! | CTCCACAAAGGTATTTTTCT+AGG | - | chr5_3:7873656-7873675 | Msa0795840:intron | 35.0% |
| TCCCTAGAAAAATACCTTTG+TGG | + | chr5_3:7873661-7873680 | None:intergenic | 35.0% | |
| !! | TGGAAAGTATTGCTAGTGTT+AGG | - | chr5_3:7874040-7874059 | Msa0795840:intron | 35.0% |
| CTGCAAATTCGTAAAAACTC+AGG | + | chr5_3:7874409-7874428 | None:intergenic | 35.0% | |
| ! | GTCTATTATGAGGATGATGG+TGG | - | chr5_3:7872150-7872169 | Msa0795840:three_prime_UTR | 40.0% |
| !! | TTATGAGGATGATGGTGGTT+TGG | - | chr5_3:7872155-7872174 | Msa0795840:three_prime_UTR | 40.0% |
| AACATCTTATCACCAGCACA+AGG | + | chr5_3:7872241-7872260 | None:intergenic | 40.0% | |
| ATTGGATTGCAGCAAATGTC+TGG | + | chr5_3:7872298-7872317 | None:intergenic | 40.0% | |
| TAATATGGTACCTTTGCAGG+AGG | + | chr5_3:7872458-7872477 | None:intergenic | 40.0% | |
| GAGTAATATGGTACCTTTGC+AGG | + | chr5_3:7872461-7872480 | None:intergenic | 40.0% | |
| AAAATTGCAGCTTCTTCTCC+AGG | - | chr5_3:7872814-7872833 | Msa0795840:intron | 40.0% | |
| AAAGAAAACTACTCAGCCAC+CGG | + | chr5_3:7873173-7873192 | None:intergenic | 40.0% | |
| GAAAAATACCTTTGTGGAGG+CGG | + | chr5_3:7873655-7873674 | None:intergenic | 40.0% | |
| !!! | ACTTTTTTCTTCGGTTCGCT+TGG | - | chr5_3:7873690-7873709 | Msa0795840:intron | 40.0% |
| TATGAAGTAGTGTCCAGTGA+AGG | + | chr5_3:7874471-7874490 | None:intergenic | 40.0% | |
| ATCTTATCACCAGCACAAGG+TGG | + | chr5_3:7872238-7872257 | None:intergenic | 45.0% | |
| GAATTGAGGTAGTCTGTGCA+TGG | + | chr5_3:7872265-7872284 | None:intergenic | 45.0% | |
| ! | AGCAATGATGGAGAAAGACC+TGG | + | chr5_3:7872835-7872854 | None:intergenic | 45.0% |
| ! | TTGAGAGGCTTTTTACCTGG+AGG | + | chr5_3:7872862-7872881 | None:intergenic | 45.0% |
| ! | AGCATTTTGCCAGTTGAGCT+AGG | + | chr5_3:7873513-7873532 | None:intergenic | 45.0% |
| TACGAATTTGCAGCAACACG+TGG | - | chr5_3:7874416-7874435 | Msa0795840:intron | 45.0% | |
| CAAATGCTTCCACCTTGTGC+TGG | - | chr5_3:7872226-7872245 | Msa0795840:three_prime_UTR | 50.0% | |
| ! | CTGGTGGATGAGTGGAATTG+AGG | + | chr5_3:7872279-7872298 | None:intergenic | 50.0% |
| ! | GCAAATGTCTGGTGGATGAG+TGG | + | chr5_3:7872287-7872306 | None:intergenic | 50.0% |
| GGATTGCAGCAAATGTCTGG+TGG | + | chr5_3:7872295-7872314 | None:intergenic | 50.0% | |
| ! | CCAAAACTTTCGAGTAGGCC+AGG | + | chr5_3:7872376-7872395 | None:intergenic | 50.0% |
| ! | CCTGGCCTACTCGAAAGTTT+TGG | - | chr5_3:7872373-7872392 | Msa0795840:CDS | 50.0% |
| ATGGTACCTTTGCAGGAGGT+GGG | + | chr5_3:7872454-7872473 | None:intergenic | 50.0% | |
| TATGGTACCTTTGCAGGAGG+TGG | + | chr5_3:7872455-7872474 | None:intergenic | 50.0% | |
| CTTACAAAGTGACACACCGG+TGG | - | chr5_3:7873154-7873173 | Msa0795840:intron | 50.0% | |
| TCCAGAAGTCCTAGCTCAAC+TGG | - | chr5_3:7873501-7873520 | Msa0795840:intron | 50.0% | |
| ACTCACAAGTGGAGGAACCA+GGG | + | chr5_3:7873573-7873592 | None:intergenic | 50.0% | |
| AACTCACAAGTGGAGGAACC+AGG | + | chr5_3:7873574-7873593 | None:intergenic | 50.0% | |
| AAATATGGCCGCCTCCACAA+AGG | - | chr5_3:7873644-7873663 | Msa0795840:intron | 50.0% | |
| GCAACACGTGGAAGTGATGA+CGG | - | chr5_3:7874428-7874447 | Msa0795840:intron | 50.0% | |
| TTCGATCCCACCTCCTGCAA+AGG | - | chr5_3:7872445-7872464 | Msa0795840:intron | 55.0% | |
| CCTGGAGGTTGCAGCAATGA+TGG | + | chr5_3:7872847-7872866 | None:intergenic | 55.0% | |
| CCATCATTGCTGCAACCTCC+AGG | - | chr5_3:7872844-7872863 | Msa0795840:intron | 55.0% | |
| GCCAGTTGAGCTAGGACTTC+TGG | + | chr5_3:7873505-7873524 | None:intergenic | 55.0% | |
| !! | ACACGTGGAAGTGATGACGG+AGG | - | chr5_3:7874431-7874450 | Msa0795840:intron | 55.0% |
| !! | TGGAAGTGATGACGGAGGAG+CGG | - | chr5_3:7874436-7874455 | Msa0795840:intron | 55.0% |
| GTTAGGCCGGATGCCATGAC+CGG | - | chr5_3:7873539-7873558 | Msa0795840:intron | 60.0% | |
| TTAGGCCGGATGCCATGACC+GGG | - | chr5_3:7873540-7873559 | Msa0795840:intron | 60.0% | |
| AGGAACCAGGGTTCGAACCC+CGG | + | chr5_3:7873561-7873580 | None:intergenic | 60.0% | |
| !! | GGAAGTGATGACGGAGGAGC+GGG | - | chr5_3:7874437-7874456 | Msa0795840:intron | 60.0% |
| !! | GAAGTGATGACGGAGGAGCG+GGG | - | chr5_3:7874438-7874457 | Msa0795840:intron | 60.0% |
| GCGGGGATGATCACCTTCAC+TGG | - | chr5_3:7874455-7874474 | Msa0795840:intron | 60.0% | |
| TAGGCCGGATGCCATGACCG+GGG | - | chr5_3:7873541-7873560 | Msa0795840:intron | 65.0% | |
| CGAACCCCGGTCATGGCATC+CGG | + | chr5_3:7873548-7873567 | None:intergenic | 65.0% | |
| CAGGGTTCGAACCCCGGTCA+TGG | + | chr5_3:7873555-7873574 | None:intergenic | 65.0% | |
| CATGACCGGGGTTCGAACCC+TGG | - | chr5_3:7873553-7873572 | Msa0795840:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 7872148 | 7874711 | 7872148 | ID=Msa0795840;Name=Msa0795840 |
| chr5_3 | mRNA | 7872148 | 7874711 | 7872148 | ID=Msa0795840-mRNA-1;Parent=Msa0795840;Name=Msa0795840-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.5|0.66|1|0|0.33|3|185|128 |
| chr5_3 | exon | 7872148 | 7872430 | 7872148 | ID=Msa0795840-mRNA-1:exon:3257;Parent=Msa0795840-mRNA-1 |
| chr5_3 | exon | 7873994 | 7874035 | 7873994 | ID=Msa0795840-mRNA-1:exon:3256;Parent=Msa0795840-mRNA-1 |
| chr5_3 | exon | 7874465 | 7874711 | 7874465 | ID=Msa0795840-mRNA-1:exon:3255;Parent=Msa0795840-mRNA-1 |
| chr5_3 | CDS | 7874465 | 7874711 | 7874465 | ID=Msa0795840-mRNA-1:cds;Parent=Msa0795840-mRNA-1 |
| chr5_3 | CDS | 7873994 | 7874035 | 7873994 | ID=Msa0795840-mRNA-1:cds;Parent=Msa0795840-mRNA-1 |
| chr5_3 | CDS | 7872333 | 7872430 | 7872333 | ID=Msa0795840-mRNA-1:cds;Parent=Msa0795840-mRNA-1 |
| chr5_3 | three_prime_UTR | 7872148 | 7872332 | 7872148 | ID=Msa0795840-mRNA-1:three_prime_utr;Parent=Msa0795840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
