Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801790 | sp|Q07185|AOX1_SOYBN | 78.042 | 337 | 57 | 4 | 1 | 337 | 2 | 321 | 0.0 | 522 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801790 | S5FNL5 | 99.702 | 336 | 0 | 1 | 2 | 337 | 1 | 335 | 0.0 | 701 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055640 | Msa0801790 | 0.808743 | 2.665471e-50 | -8.615850e-47 |
| Msa0734280 | Msa0801790 | 0.803080 | 4.133767e-49 | -8.615850e-47 |
| Msa0734940 | Msa0801790 | 0.806087 | 9.752720e-50 | -8.615850e-47 |
| Msa0754890 | Msa0801790 | 0.812134 | 4.939316e-51 | -8.615850e-47 |
| Msa0801790 | Msa1272010 | 0.810217 | 1.286132e-50 | -8.615850e-47 |
| Msa0600590 | Msa0801790 | 0.803944 | 2.737788e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801790 | MtrunA17_Chr5g0409121 | 95.238 | 336 | 10 | 3 | 2 | 337 | 1 | 330 | 0.0 | 664 |
| Msa0801790 | MtrunA17_Chr4g0050421 | 75.600 | 250 | 61 | 0 | 88 | 337 | 96 | 345 | 1.44e-149 | 424 |
| Msa0801790 | MtrunA17_Chr5g0430001 | 67.424 | 264 | 86 | 0 | 74 | 337 | 60 | 323 | 1.12e-139 | 398 |
| Msa0801790 | MtrunA17_Chr5g0430011 | 66.667 | 273 | 88 | 1 | 68 | 337 | 52 | 324 | 2.23e-133 | 382 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801790 | AT3G22370.1 | 79.743 | 311 | 60 | 1 | 30 | 337 | 44 | 354 | 0.0 | 521 |
| Msa0801790 | AT3G22360.1 | 84.249 | 273 | 41 | 1 | 67 | 337 | 53 | 325 | 9.10e-176 | 490 |
| Msa0801790 | AT3G27620.1 | 82.528 | 269 | 39 | 1 | 77 | 337 | 61 | 329 | 6.93e-169 | 473 |
| Msa0801790 | AT1G32350.1 | 70.545 | 275 | 73 | 1 | 71 | 337 | 44 | 318 | 8.10e-154 | 434 |
| Msa0801790 | AT5G64210.1 | 68.293 | 287 | 80 | 3 | 53 | 337 | 76 | 353 | 1.04e-147 | 420 |
| Msa0801790 | AT1G32350.2 | 70.703 | 256 | 67 | 1 | 71 | 318 | 44 | 299 | 1.27e-142 | 405 |
Find 96 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCATACGGTGTGCAAATT+TGG | 0.112313 | 5_3:-15955379 | None:intergenic |
| TTCCCCAAAACTCTACTTTA+AGG | 0.165997 | 5_3:+15955514 | Msa0801790:CDS |
| AAATGCTGAAGTCAATATTT+TGG | 0.196147 | 5_3:+15956206 | Msa0801790:three_prime_UTR |
| ACCAATCTGTCGGCCTATTT+TGG | 0.207675 | 5_3:+15956153 | Msa0801790:three_prime_UTR |
| TTCTGGACAAGATGGCTTAT+TGG | 0.228191 | 5_3:+15954066 | Msa0801790:CDS |
| TTCTTCAATGCTTATTTCTT+AGG | 0.252741 | 5_3:+15955342 | Msa0801790:CDS |
| ATTGGACTGTTAAGAGTCTT+AGG | 0.253076 | 5_3:+15954084 | Msa0801790:CDS |
| ACAAAATAACCCCATTTGTT+TGG | 0.260248 | 5_3:-15953666 | None:intergenic |
| GGTGATAACAAAGATGAAAA+AGG | 0.272034 | 5_3:+15953807 | Msa0801790:CDS |
| CATCCCTTAAAGTAGAGTTT+TGG | 0.284733 | 5_3:-15955518 | None:intergenic |
| AAAAGGGATTACCAGTTATT+GGG | 0.302542 | 5_3:+15953824 | Msa0801790:CDS |
| CAGTTCACCACTACCAAAAT+AGG | 0.306627 | 5_3:-15956166 | None:intergenic |
| TCCTCCGTCGTCGTCGTCTC+AGG | 0.324683 | 5_3:+15953776 | Msa0801790:CDS |
| TTTGCAAAGAAGGGTTTATT+AGG | 0.324829 | 5_3:+15953627 | Msa0801790:CDS |
| AATGGAAATGGAATTGCTTC+AGG | 0.325465 | 5_3:+15953886 | Msa0801790:CDS |
| TTTCTCAAGGAACTTGATAA+AGG | 0.335708 | 5_3:+15955441 | Msa0801790:CDS |
| CCACTTCCATGAAAGTCATT+AGG | 0.338652 | 5_3:-15955269 | None:intergenic |
| CGTAATGTTGTTTGCAAAGA+AGG | 0.348388 | 5_3:+15953617 | Msa0801790:CDS |
| ATGATGCCAATGTATAAAAC+AGG | 0.353168 | 5_3:+15956292 | Msa0801790:three_prime_UTR |
| CAGCTATTGCTATTGACTAT+TGG | 0.356927 | 5_3:+15955487 | Msa0801790:CDS |
| CATGCACCTAATGACTTTCA+TGG | 0.370912 | 5_3:+15955263 | Msa0801790:CDS |
| ACCATACGGTGTGCAAATTT+GGG | 0.381391 | 5_3:-15955378 | None:intergenic |
| TCCCCAAAACTCTACTTTAA+GGG | 0.386600 | 5_3:+15955515 | Msa0801790:CDS |
| CTTCTTTGCAAACAACATTA+CGG | 0.406181 | 5_3:-15953616 | None:intergenic |
| TTAGAGAAAGAGAGAGAAAG+AGG | 0.409678 | 5_3:-15953487 | None:intergenic |
| AGGGAGGCTGCTGCTCCAAT+TGG | 0.413151 | 5_3:+15956118 | Msa0801790:CDS |
| GATCAACAACCCCTCTTGTA+AGG | 0.418814 | 5_3:+15953691 | Msa0801790:CDS |
| GGTTTATTAGGTGGTGAAGT+TGG | 0.424159 | 5_3:+15953639 | Msa0801790:CDS |
| AGGTTGAACACCCCAATAAC+TGG | 0.436601 | 5_3:-15953835 | None:intergenic |
| AAGTTGGTGTTCCAAACAAA+TGG | 0.440248 | 5_3:+15953655 | Msa0801790:CDS |
| AGTTGGTGTTCCAAACAAAT+GGG | 0.442514 | 5_3:+15953656 | Msa0801790:CDS |
| AGCATTCCTCCTACCATGCC+AGG | 0.449536 | 5_3:-15955159 | None:intergenic |
| TCGTCGTCTCAGGGTGGTGC+TGG | 0.451393 | 5_3:+15953786 | Msa0801790:CDS |
| ATTACCAAGGACGAGAGTTA+AGG | 0.452922 | 5_3:+15956098 | Msa0801790:CDS |
| TTACCAAGGACGAGAGTTAA+GGG | 0.457110 | 5_3:+15956099 | Msa0801790:CDS |
| CTGATGGTACTGAATGGAAA+TGG | 0.462655 | 5_3:+15953874 | Msa0801790:CDS |
| TGCACTTGTCATAACTGTCC+AGG | 0.463520 | 5_3:+15955314 | Msa0801790:CDS |
| CATTTCCATTCAGTACCATC+AGG | 0.464852 | 5_3:-15953873 | None:intergenic |
| ATCTTGTCCAGAAAAGTTGT+TGG | 0.465005 | 5_3:-15954056 | None:intergenic |
| GAGACAGTAGCTGCTGTCCC+TGG | 0.491184 | 5_3:+15955141 | Msa0801790:CDS |
| TCGATCCGGAACGACGAAAA+CGG | 0.491381 | 5_3:-15953545 | None:intergenic |
| ATCCACCACTGTGCTCAAAT+CGG | 0.492142 | 5_3:-15955203 | None:intergenic |
| CCTCCGTCGTCGTCGTCTCA+GGG | 0.492164 | 5_3:+15953777 | Msa0801790:CDS |
| CATCATCATCTTCTTCGATC+CGG | 0.496661 | 5_3:-15953559 | None:intergenic |
| GGTCTCTAGTGATATCCAAT+TGG | 0.498465 | 5_3:-15956133 | None:intergenic |
| GCTGCTGTCCCTGGCATGGT+AGG | 0.504751 | 5_3:+15955150 | Msa0801790:CDS |
| TACTTTAAGGGATGTTGTAG+AGG | 0.505163 | 5_3:+15955527 | Msa0801790:CDS |
| ACCCAAATTTGCACACCGTA+TGG | 0.511597 | 5_3:+15955377 | Msa0801790:CDS |
| ACCAAAATAGGCCGACAGAT+TGG | 0.512301 | 5_3:-15956154 | None:intergenic |
| CCTAATGACTTTCATGGAAG+TGG | 0.513462 | 5_3:+15955269 | Msa0801790:CDS |
| ATGGAAATGGAATTGCTTCA+GGG | 0.515778 | 5_3:+15953887 | Msa0801790:CDS |
| TAATTGAAACAGAGAAGGTA+TGG | 0.517621 | 5_3:+15955099 | Msa0801790:intron |
| CAAAACCTGATGGTACTGAA+TGG | 0.518207 | 5_3:+15953868 | Msa0801790:CDS |
| TGCTAATCTGTCAGATCAGA+AGG | 0.526688 | 5_3:+15953731 | Msa0801790:CDS |
| CCTCCCTTAACTCTCGTCCT+TGG | 0.532033 | 5_3:-15956102 | None:intergenic |
| GTAATGTTGTTTGCAAAGAA+GGG | 0.540746 | 5_3:+15953618 | Msa0801790:CDS |
| AGTGCACGCTCATACCACTT+TGG | 0.545912 | 5_3:-15955297 | None:intergenic |
| GCAAAGAAGGGTTTATTAGG+TGG | 0.547710 | 5_3:+15953630 | Msa0801790:CDS |
| TCAATAGCAATAGCTGGAGC+AGG | 0.548905 | 5_3:-15955480 | None:intergenic |
| GCTGTCCCTGGCATGGTAGG+AGG | 0.556200 | 5_3:+15955153 | Msa0801790:CDS |
| CTGTCTCAAGCATCATTGCT+CGG | 0.558637 | 5_3:-15955125 | None:intergenic |
| AAATTTGCACACCGTATGGT+TGG | 0.563076 | 5_3:+15955381 | Msa0801790:CDS |
| CTCATACACTGAGTTTCTCA+AGG | 0.566793 | 5_3:+15955428 | Msa0801790:CDS |
| CAATAGTCAATAGCAATAGC+TGG | 0.570433 | 5_3:-15955486 | None:intergenic |
| TGCTTGCGTTCCTTACAAGA+GGG | 0.572460 | 5_3:-15953701 | None:intergenic |
| TCTGCTTTGTATGTCTCCCA+TGG | 0.581364 | 5_3:-15954002 | None:intergenic |
| AAAGGGATTACCAGTTATTG+GGG | 0.581745 | 5_3:+15953825 | Msa0801790:CDS |
| CGCCGATTTGAGCACAGTGG+TGG | 0.585049 | 5_3:+15955201 | Msa0801790:CDS |
| GATTTGAGCACAGTGGTGGA+TGG | 0.585457 | 5_3:+15955205 | Msa0801790:CDS |
| AGTGAATAGCTTCTTCCTCA+AGG | 0.587319 | 5_3:-15955407 | None:intergenic |
| GTGCTTGCGTTCCTTACAAG+AGG | 0.587389 | 5_3:-15953702 | None:intergenic |
| CGAAGAAGATGATGATGATG+AGG | 0.590772 | 5_3:+15953565 | Msa0801790:exon |
| AGTAGCTGCTGTCCCTGGCA+TGG | 0.598186 | 5_3:+15955146 | Msa0801790:CDS |
| ATGATGAGGCATGGTGGTCA+CGG | 0.609582 | 5_3:+15953579 | Msa0801790:CDS |
| TCTAAGATCACAAAACCTGA+TGG | 0.617644 | 5_3:+15953858 | Msa0801790:CDS |
| CGATGTTAACCACTTTGCAT+CGG | 0.619490 | 5_3:+15955578 | Msa0801790:CDS |
| CCACCCTGAGACGACGACGA+CGG | 0.620652 | 5_3:-15953780 | None:intergenic |
| GCACTTGTCATAACTGTCCA+GGG | 0.622780 | 5_3:+15955315 | Msa0801790:CDS |
| ATCACTAGAGACCAATCTGT+CGG | 0.622959 | 5_3:+15956143 | Msa0801790:exon |
| CCTCAAGGTAACCAACCATA+CGG | 0.624191 | 5_3:-15955392 | None:intergenic |
| GCTTGCGTTCCTTACAAGAG+GGG | 0.632754 | 5_3:-15953700 | None:intergenic |
| GACAACATACCGATGCAAAG+TGG | 0.644093 | 5_3:-15955587 | None:intergenic |
| CCGTATGGTTGGTTACCTTG+AGG | 0.649479 | 5_3:+15955392 | Msa0801790:CDS |
| GCATTCCTCCTACCATGCCA+GGG | 0.651988 | 5_3:-15955158 | None:intergenic |
| CCCTGAGACGACGACGACGG+AGG | 0.657783 | 5_3:-15953777 | None:intergenic |
| GTTGGTGTTCCAAACAAATG+GGG | 0.661779 | 5_3:+15953657 | Msa0801790:CDS |
| TGGAAGTGGCAAAACCAAAG+TGG | 0.670752 | 5_3:+15955283 | Msa0801790:CDS |
| AAGCATTGAAGAAAACACCC+TGG | 0.672042 | 5_3:-15955332 | None:intergenic |
| TGATGCCAATGTATAAAACA+GGG | 0.675711 | 5_3:+15956293 | Msa0801790:three_prime_UTR |
| AAGATGATGATGATGAGGCA+TGG | 0.678207 | 5_3:+15953570 | Msa0801790:exon |
| TGCCAATGTATAAAACAGGG+TGG | 0.687062 | 5_3:+15956296 | Msa0801790:three_prime_UTR |
| TTGCAGGATATACATTACCA+AGG | 0.701646 | 5_3:+15956085 | Msa0801790:intron |
| CCGTCGTCGTCGTCTCAGGG+TGG | 0.709337 | 5_3:+15953780 | Msa0801790:CDS |
| ATGATGATGATGAGGCATGG+TGG | 0.746370 | 5_3:+15953573 | Msa0801790:CDS |
| CCAAGGACGAGAGTTAAGGG+AGG | 0.747025 | 5_3:+15956102 | Msa0801790:CDS |
| TTGCGCCGATTTGAGCACAG+TGG | 0.750440 | 5_3:+15955198 | Msa0801790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATTTTATTTATTTTA+TGG | + | chr5_3:15954368-15954387 | Msa0801790:intron | 0.0% |
| !!! | AAAATGATTTTTTTTTAATG+TGG | + | chr5_3:15953963-15953982 | Msa0801790:intron | 10.0% |
| !! | TATTATTATTATAAAAATCC+GGG | + | chr5_3:15954182-15954201 | Msa0801790:intron | 10.0% |
| !!! | TTATTAATTTTTTTCAAAGG+AGG | - | chr5_3:15954301-15954320 | None:intergenic | 15.0% |
| !!! | ATTTTATTTATTTTATGGTC+AGG | + | chr5_3:15954373-15954392 | Msa0801790:intron | 15.0% |
| !!! | TTTTATTTATTTTATGGTCA+GGG | + | chr5_3:15954374-15954393 | Msa0801790:intron | 15.0% |
| !! | AAATAAAAAATTGCTTAAAC+TGG | + | chr5_3:15954847-15954866 | Msa0801790:intron | 15.0% |
| !! | TTCAAATTTCATTCTTATTA+GGG | - | chr5_3:15954951-15954970 | None:intergenic | 15.0% |
| !! | ATTCAAATTTCATTCTTATT+AGG | - | chr5_3:15954952-15954971 | None:intergenic | 15.0% |
| !! | AAACTTTGAACATAATTTAT+AGG | - | chr5_3:15955018-15955037 | None:intergenic | 15.0% |
| !!! | ATTAGTATTAGTTGTTTTAT+TGG | + | chr5_3:15956261-15956280 | Msa0801790:three_prime_UTR | 15.0% |
| !!! | TTAATAAAAAAATGGATTCC+AGG | + | chr5_3:15954314-15954333 | Msa0801790:intron | 20.0% |
| !! | AACACACATTAAAAATATGA+TGG | - | chr5_3:15954555-15954574 | None:intergenic | 20.0% |
| !! | TTATGCATGATTGAATATTT+AGG | - | chr5_3:15954579-15954598 | None:intergenic | 20.0% |
| !!! | ATCCAATGTTTTATATTGTA+TGG | + | chr5_3:15954679-15954698 | Msa0801790:intron | 20.0% |
| !! | TACCATACAATATAAAACAT+TGG | - | chr5_3:15954684-15954703 | None:intergenic | 20.0% |
| !!! | GGATTTTTTTTTAAACCAAA+AGG | - | chr5_3:15954741-15954760 | None:intergenic | 20.0% |
| !! | ACAATTATATTGTTCTTTAG+AGG | - | chr5_3:15954788-15954807 | None:intergenic | 20.0% |
| !!! | ACATAAAATACTTTTGATCT+TGG | - | chr5_3:15955057-15955076 | None:intergenic | 20.0% |
| !! | AAAAATAAAAAGACAGATCA+TGG | - | chr5_3:15955851-15955870 | None:intergenic | 20.0% |
| !! | TCATTATACATTCAAAATCA+TGG | + | chr5_3:15955952-15955971 | Msa0801790:intron | 20.0% |
| ! | GTGATAACAAAGATGAAAAA+GGG | + | chr5_3:15953808-15953827 | Msa0801790:CDS | 25.0% |
| ! | CTCTTCTAATAAAGATTAGA+TGG | - | chr5_3:15954266-15954285 | None:intergenic | 25.0% |
| ! | CATCTAATCTTTATTAGAAG+AGG | + | chr5_3:15954264-15954283 | Msa0801790:intron | 25.0% |
| !!! | TTTTAAGGTACTTTTGTTCA+AGG | + | chr5_3:15954526-15954545 | Msa0801790:intron | 25.0% |
| ! | ACACATTAAAAATATGATGG+CGG | - | chr5_3:15954552-15954571 | None:intergenic | 25.0% |
| ! | AATAAAAATCCACCATAAGA+TGG | + | chr5_3:15954706-15954725 | Msa0801790:intron | 25.0% |
| ! | GTATTTAATTGAAACAGAGA+AGG | + | chr5_3:15955094-15955113 | Msa0801790:intron | 25.0% |
| !! | TTCTTCAATGCTTATTTCTT+AGG | + | chr5_3:15955342-15955361 | Msa0801790:CDS | 25.0% |
| !!! | AGTTTTTCAACAGAAACTAA+TGG | + | chr5_3:15955725-15955744 | Msa0801790:intron | 25.0% |
| !! | AAATGCTGAAGTCAATATTT+TGG | + | chr5_3:15956206-15956225 | Msa0801790:three_prime_UTR | 25.0% |
| CTTCTTTGCAAACAACATTA+CGG | - | chr5_3:15953619-15953638 | None:intergenic | 30.0% | |
| ! | GTAATGTTGTTTGCAAAGAA+GGG | + | chr5_3:15953618-15953637 | Msa0801790:CDS | 30.0% |
| TTTGCAAAGAAGGGTTTATT+AGG | + | chr5_3:15953627-15953646 | Msa0801790:CDS | 30.0% | |
| ACAAAATAACCCCATTTGTT+TGG | - | chr5_3:15953669-15953688 | None:intergenic | 30.0% | |
| GGTGATAACAAAGATGAAAA+AGG | + | chr5_3:15953807-15953826 | Msa0801790:CDS | 30.0% | |
| AAAAAGGGATTACCAGTTAT+TGG | + | chr5_3:15953823-15953842 | Msa0801790:CDS | 30.0% | |
| AAAAGGGATTACCAGTTATT+GGG | + | chr5_3:15953824-15953843 | Msa0801790:CDS | 30.0% | |
| ! | TCATAAACCAACAACTTTTC+TGG | + | chr5_3:15954049-15954068 | Msa0801790:CDS | 30.0% |
| TATTATAAAAATCCGGGTTC+TGG | + | chr5_3:15954188-15954207 | Msa0801790:intron | 30.0% | |
| !! | TTAAAACCTTTTCAGGAGTT+AGG | - | chr5_3:15954512-15954531 | None:intergenic | 30.0% |
| ! | TAACTCCTGAAAAGGTTTTA+AGG | + | chr5_3:15954511-15954530 | Msa0801790:intron | 30.0% |
| ! | AAGTACCTTAAAACCTTTTC+AGG | - | chr5_3:15954519-15954538 | None:intergenic | 30.0% |
| TAACAATAATAGCTAGCAAG+TGG | - | chr5_3:15954762-15954781 | None:intergenic | 30.0% | |
| TAGGATAGTAAGTTCATCAA+GGG | - | chr5_3:15954999-15955018 | None:intergenic | 30.0% | |
| ATAGGATAGTAAGTTCATCA+AGG | - | chr5_3:15955000-15955019 | None:intergenic | 30.0% | |
| TAATTGAAACAGAGAAGGTA+TGG | + | chr5_3:15955099-15955118 | Msa0801790:intron | 30.0% | |
| TTTCTCAAGGAACTTGATAA+AGG | + | chr5_3:15955441-15955460 | Msa0801790:CDS | 30.0% | |
| ! | ATCCCTTAAAGTAGAGTTTT+GGG | - | chr5_3:15955520-15955539 | None:intergenic | 30.0% |
| TGATCAAGTAAACTTGTGTA+AGG | + | chr5_3:15955672-15955691 | Msa0801790:intron | 30.0% | |
| GTTTCTGTTGAAAAACTGAT+AGG | - | chr5_3:15955722-15955741 | None:intergenic | 30.0% | |
| ! | TTTGTAGCTTTGCAAATTCA+AGG | - | chr5_3:15955804-15955823 | None:intergenic | 30.0% |
| !!! | GAGTACTGATTATATTTTGC+TGG | + | chr5_3:15956056-15956075 | Msa0801790:intron | 30.0% |
| ATGATGCCAATGTATAAAAC+AGG | + | chr5_3:15956292-15956311 | Msa0801790:three_prime_UTR | 30.0% | |
| TGATGCCAATGTATAAAACA+GGG | + | chr5_3:15956293-15956312 | Msa0801790:three_prime_UTR | 30.0% | |
| TTAGAGAAAGAGAGAGAAAG+AGG | - | chr5_3:15953490-15953509 | None:intergenic | 35.0% | |
| ! | CGTAATGTTGTTTGCAAAGA+AGG | + | chr5_3:15953617-15953636 | Msa0801790:CDS | 35.0% |
| !! | AAGTTGGTGTTCCAAACAAA+TGG | + | chr5_3:15953655-15953674 | Msa0801790:CDS | 35.0% |
| ! | AGTTGGTGTTCCAAACAAAT+GGG | + | chr5_3:15953656-15953675 | Msa0801790:CDS | 35.0% |
| AAAGGGATTACCAGTTATTG+GGG | + | chr5_3:15953825-15953844 | Msa0801790:CDS | 35.0% | |
| !! | TCAGGTTTTGTGATCTTAGA+AGG | - | chr5_3:15953858-15953877 | None:intergenic | 35.0% |
| ! | TCTAAGATCACAAAACCTGA+TGG | + | chr5_3:15953858-15953877 | Msa0801790:CDS | 35.0% |
| AATGGAAATGGAATTGCTTC+AGG | + | chr5_3:15953886-15953905 | Msa0801790:CDS | 35.0% | |
| ATGGAAATGGAATTGCTTCA+GGG | + | chr5_3:15953887-15953906 | Msa0801790:CDS | 35.0% | |
| !!! | ATTTTGATTGTGACAGCCAT+GGG | + | chr5_3:15953986-15954005 | Msa0801790:intron | 35.0% |
| ATCTTGTCCAGAAAAGTTGT+TGG | - | chr5_3:15954059-15954078 | None:intergenic | 35.0% | |
| ! | AACAACTTTTCTGGACAAGA+TGG | + | chr5_3:15954058-15954077 | Msa0801790:CDS | 35.0% |
| ATTGGACTGTTAAGAGTCTT+AGG | + | chr5_3:15954084-15954103 | Msa0801790:CDS | 35.0% | |
| !!! | TCCAACTGATCTCTTTTTTC+AGG | + | chr5_3:15954109-15954128 | Msa0801790:CDS | 35.0% |
| ACCTGAAAAAAGAGATCAGT+TGG | - | chr5_3:15954113-15954132 | None:intergenic | 35.0% | |
| ! | AAATGGATTCCAGGAATTAC+TGG | + | chr5_3:15954323-15954342 | Msa0801790:intron | 35.0% |
| AAAATCACACCAGTAATTCC+TGG | - | chr5_3:15954335-15954354 | None:intergenic | 35.0% | |
| TGCATAATGCATGTGATGTT+TGG | + | chr5_3:15954592-15954611 | Msa0801790:intron | 35.0% | |
| GTCAGTTGGTTACATGAAAT+GGG | + | chr5_3:15954643-15954662 | Msa0801790:intron | 35.0% | |
| !! | TAAAAAGCACCATCTTATGG+TGG | - | chr5_3:15954718-15954737 | None:intergenic | 35.0% |
| !! | AGGTAAAAAGCACCATCTTA+TGG | - | chr5_3:15954721-15954740 | None:intergenic | 35.0% |
| !! | AGATGGTGCTTTTTACCTTT+TGG | + | chr5_3:15954723-15954742 | Msa0801790:intron | 35.0% |
| AGGATAGTAAGTTCATCAAG+GGG | - | chr5_3:15954998-15955017 | None:intergenic | 35.0% | |
| CAATAGTCAATAGCAATAGC+TGG | - | chr5_3:15955489-15955508 | None:intergenic | 35.0% | |
| ! | CAGCTATTGCTATTGACTAT+TGG | + | chr5_3:15955487-15955506 | Msa0801790:CDS | 35.0% |
| TTCCCCAAAACTCTACTTTA+AGG | + | chr5_3:15955514-15955533 | Msa0801790:CDS | 35.0% | |
| TCCCCAAAACTCTACTTTAA+GGG | + | chr5_3:15955515-15955534 | Msa0801790:CDS | 35.0% | |
| ! | TCCCTTAAAGTAGAGTTTTG+GGG | - | chr5_3:15955519-15955538 | None:intergenic | 35.0% |
| ! | CATCCCTTAAAGTAGAGTTT+TGG | - | chr5_3:15955521-15955540 | None:intergenic | 35.0% |
| ! | TACTTTAAGGGATGTTGTAG+AGG | + | chr5_3:15955527-15955546 | Msa0801790:CDS | 35.0% |
| AGGTTATCCTCTCAATGTAA+AGG | + | chr5_3:15955692-15955711 | Msa0801790:intron | 35.0% | |
| AGGATAACCTTTACATTGAG+AGG | - | chr5_3:15955702-15955721 | None:intergenic | 35.0% | |
| ACAGAAACTAATGGTGTGTT+TGG | + | chr5_3:15955734-15955753 | Msa0801790:intron | 35.0% | |
| TGCAAAGCTACAAATTCAAG+AGG | + | chr5_3:15955810-15955829 | Msa0801790:intron | 35.0% | |
| ! | ATTTTGCTGGAATGAATTGC+AGG | + | chr5_3:15956069-15956088 | Msa0801790:intron | 35.0% |
| TTGCAGGATATACATTACCA+AGG | + | chr5_3:15956085-15956104 | Msa0801790:intron | 35.0% | |
| ! | TTCCACCCTGTTTTATACAT+TGG | - | chr5_3:15956301-15956320 | None:intergenic | 35.0% |
| CATCATCATCTTCTTCGATC+CGG | - | chr5_3:15953562-15953581 | None:intergenic | 40.0% | |
| ! | CGAAGAAGATGATGATGATG+AGG | + | chr5_3:15953565-15953584 | Msa0801790:exon | 40.0% |
| ! | AAGATGATGATGATGAGGCA+TGG | + | chr5_3:15953570-15953589 | Msa0801790:exon | 40.0% |
| GCAAAGAAGGGTTTATTAGG+TGG | + | chr5_3:15953630-15953649 | Msa0801790:CDS | 40.0% | |
| GGTTTATTAGGTGGTGAAGT+TGG | + | chr5_3:15953639-15953658 | Msa0801790:CDS | 40.0% | |
| ! | GTTGGTGTTCCAAACAAATG+GGG | + | chr5_3:15953657-15953676 | Msa0801790:CDS | 40.0% |
| TGCTAATCTGTCAGATCAGA+AGG | + | chr5_3:15953731-15953750 | Msa0801790:CDS | 40.0% | |
| ! | CAAAACCTGATGGTACTGAA+TGG | + | chr5_3:15953868-15953887 | Msa0801790:CDS | 40.0% |
| CATTTCCATTCAGTACCATC+AGG | - | chr5_3:15953876-15953895 | None:intergenic | 40.0% | |
| ! | CTGATGGTACTGAATGGAAA+TGG | + | chr5_3:15953874-15953893 | Msa0801790:CDS | 40.0% |
| !!! | GATTTTGATTGTGACAGCCA+TGG | + | chr5_3:15953985-15954004 | Msa0801790:intron | 40.0% |
| TTCTGGACAAGATGGCTTAT+TGG | + | chr5_3:15954066-15954085 | Msa0801790:CDS | 40.0% | |
| TAGATGGTTCGCTACATTGT+GGG | - | chr5_3:15954250-15954269 | None:intergenic | 40.0% | |
| TTAGATGGTTCGCTACATTG+TGG | - | chr5_3:15954251-15954270 | None:intergenic | 40.0% | |
| GTTACACCTAACTCCTGAAA+AGG | + | chr5_3:15954503-15954522 | Msa0801790:intron | 40.0% | |
| !! | CATGTGATGTTTGGCTTGTT+TGG | + | chr5_3:15954601-15954620 | Msa0801790:intron | 40.0% |
| GGTCAGTTGGTTACATGAAA+TGG | + | chr5_3:15954642-15954661 | Msa0801790:intron | 40.0% | |
| CATGCACCTAATGACTTTCA+TGG | + | chr5_3:15955263-15955282 | Msa0801790:CDS | 40.0% | |
| CCACTTCCATGAAAGTCATT+AGG | - | chr5_3:15955272-15955291 | None:intergenic | 40.0% | |
| CCTAATGACTTTCATGGAAG+TGG | + | chr5_3:15955269-15955288 | Msa0801790:CDS | 40.0% | |
| !! | AAGCATTGAAGAAAACACCC+TGG | - | chr5_3:15955335-15955354 | None:intergenic | 40.0% |
| ACCATACGGTGTGCAAATTT+GGG | - | chr5_3:15955381-15955400 | None:intergenic | 40.0% | |
| AACCATACGGTGTGCAAATT+TGG | - | chr5_3:15955382-15955401 | None:intergenic | 40.0% | |
| AAATTTGCACACCGTATGGT+TGG | + | chr5_3:15955381-15955400 | Msa0801790:CDS | 40.0% | |
| AGTGAATAGCTTCTTCCTCA+AGG | - | chr5_3:15955410-15955429 | None:intergenic | 40.0% | |
| CTCATACACTGAGTTTCTCA+AGG | + | chr5_3:15955428-15955447 | Msa0801790:CDS | 40.0% | |
| CGATGTTAACCACTTTGCAT+CGG | + | chr5_3:15955578-15955597 | Msa0801790:CDS | 40.0% | |
| ATTACCAAGGACGAGAGTTA+AGG | + | chr5_3:15956098-15956117 | Msa0801790:CDS | 40.0% | |
| TTACCAAGGACGAGAGTTAA+GGG | + | chr5_3:15956099-15956118 | Msa0801790:CDS | 40.0% | |
| GGTCTCTAGTGATATCCAAT+TGG | - | chr5_3:15956136-15956155 | None:intergenic | 40.0% | |
| ATCACTAGAGACCAATCTGT+CGG | + | chr5_3:15956143-15956162 | Msa0801790:exon | 40.0% | |
| CAGTTCACCACTACCAAAAT+AGG | - | chr5_3:15956169-15956188 | None:intergenic | 40.0% | |
| TGCCAATGTATAAAACAGGG+TGG | + | chr5_3:15956296-15956315 | Msa0801790:three_prime_UTR | 40.0% | |
| ! | ATGATGATGATGAGGCATGG+TGG | + | chr5_3:15953573-15953592 | Msa0801790:CDS | 45.0% |
| GATCAACAACCCCTCTTGTA+AGG | + | chr5_3:15953691-15953710 | Msa0801790:CDS | 45.0% | |
| TGCTTGCGTTCCTTACAAGA+GGG | - | chr5_3:15953704-15953723 | None:intergenic | 45.0% | |
| AGGTTGAACACCCCAATAAC+TGG | - | chr5_3:15953838-15953857 | None:intergenic | 45.0% | |
| TCTGCTTTGTATGTCTCCCA+TGG | - | chr5_3:15954005-15954024 | None:intergenic | 45.0% | |
| TGAGAGTTGGATCTAGCAGA+AGG | + | chr5_3:15954216-15954235 | Msa0801790:intron | 45.0% | |
| GAGAGTTGGATCTAGCAGAA+GGG | + | chr5_3:15954217-15954236 | Msa0801790:intron | 45.0% | |
| TTGTTTGGACGCATGTGCTT+TGG | + | chr5_3:15954616-15954635 | Msa0801790:intron | 45.0% | |
| TGTGCTTTGGTAAGGTCAGT+TGG | + | chr5_3:15954629-15954648 | Msa0801790:intron | 45.0% | |
| CTGTCTCAAGCATCATTGCT+CGG | - | chr5_3:15955128-15955147 | None:intergenic | 45.0% | |
| ATCCACCACTGTGCTCAAAT+CGG | - | chr5_3:15955206-15955225 | None:intergenic | 45.0% | |
| TGGAAGTGGCAAAACCAAAG+TGG | + | chr5_3:15955283-15955302 | Msa0801790:CDS | 45.0% | |
| TGCACTTGTCATAACTGTCC+AGG | + | chr5_3:15955314-15955333 | Msa0801790:CDS | 45.0% | |
| GCACTTGTCATAACTGTCCA+GGG | + | chr5_3:15955315-15955334 | Msa0801790:CDS | 45.0% | |
| ACCCAAATTTGCACACCGTA+TGG | + | chr5_3:15955377-15955396 | Msa0801790:CDS | 45.0% | |
| CCTCAAGGTAACCAACCATA+CGG | - | chr5_3:15955395-15955414 | None:intergenic | 45.0% | |
| TCAATAGCAATAGCTGGAGC+AGG | - | chr5_3:15955483-15955502 | None:intergenic | 45.0% | |
| GACAACATACCGATGCAAAG+TGG | - | chr5_3:15955590-15955609 | None:intergenic | 45.0% | |
| TTGAGTGAGAGCGAGACAAA+GGG | - | chr5_3:15955616-15955635 | None:intergenic | 45.0% | |
| ATTGAGTGAGAGCGAGACAA+AGG | - | chr5_3:15955617-15955636 | None:intergenic | 45.0% | |
| CTTAGCACACAAGATTGGCA+TGG | - | chr5_3:15955771-15955790 | None:intergenic | 45.0% | |
| CATGCCAATCTTGTGTGCTA+AGG | + | chr5_3:15955769-15955788 | Msa0801790:intron | 45.0% | |
| CTTGCCTTAGCACACAAGAT+TGG | - | chr5_3:15955776-15955795 | None:intergenic | 45.0% | |
| ! | ACCAATCTGTCGGCCTATTT+TGG | + | chr5_3:15956153-15956172 | Msa0801790:three_prime_UTR | 45.0% |
| ACCAAAATAGGCCGACAGAT+TGG | - | chr5_3:15956157-15956176 | None:intergenic | 45.0% | |
| !! | TTATTATTATTATAAAAATC+CGG | + | chr5_3:15954181-15954200 | Msa0801790:intron | 5.0% |
| !!! | TTTTTATTAATTTTTTTCAA+AGG | - | chr5_3:15954304-15954323 | None:intergenic | 5.0% |
| !! | GAAAAAAATTAATAAAAAAA+TGG | + | chr5_3:15954306-15954325 | Msa0801790:intron | 5.0% |
| !!! | TCTTGCCGTTTTCGTCGTTC+CGG | + | chr5_3:15953540-15953559 | Msa0801790:five_prime_UTR | 50.0% |
| TCGATCCGGAACGACGAAAA+CGG | - | chr5_3:15953548-15953567 | None:intergenic | 50.0% | |
| ATGATGAGGCATGGTGGTCA+CGG | + | chr5_3:15953579-15953598 | Msa0801790:CDS | 50.0% | |
| GCTTGCGTTCCTTACAAGAG+GGG | - | chr5_3:15953703-15953722 | None:intergenic | 50.0% | |
| GTGCTTGCGTTCCTTACAAG+AGG | - | chr5_3:15953705-15953724 | None:intergenic | 50.0% | |
| ACTCTCATCGATCCAGAACC+CGG | - | chr5_3:15954203-15954222 | None:intergenic | 50.0% | |
| !! | GGTTCTGGATCGATGAGAGT+TGG | + | chr5_3:15954203-15954222 | Msa0801790:intron | 50.0% |
| TGGACGCATGTGCTTTGGTA+AGG | + | chr5_3:15954621-15954640 | Msa0801790:intron | 50.0% | |
| ! | GATTTGAGCACAGTGGTGGA+TGG | + | chr5_3:15955205-15955224 | Msa0801790:CDS | 50.0% |
| AGTGCACGCTCATACCACTT+TGG | - | chr5_3:15955300-15955319 | None:intergenic | 50.0% | |
| ! | CCGTATGGTTGGTTACCTTG+AGG | + | chr5_3:15955392-15955411 | Msa0801790:CDS | 50.0% |
| !!! | CTGTCGGCCTATTTTGGTAG+TGG | + | chr5_3:15956159-15956178 | Msa0801790:three_prime_UTR | 50.0% |
| GCATTCCTCCTACCATGCCA+GGG | - | chr5_3:15955161-15955180 | None:intergenic | 55.0% | |
| AGCATTCCTCCTACCATGCC+AGG | - | chr5_3:15955162-15955181 | None:intergenic | 55.0% | |
| !! | TTGCGCCGATTTGAGCACAG+TGG | + | chr5_3:15955198-15955217 | Msa0801790:CDS | 55.0% |
| CCTCCCTTAACTCTCGTCCT+TGG | - | chr5_3:15956105-15956124 | None:intergenic | 55.0% | |
| CCAAGGACGAGAGTTAAGGG+AGG | + | chr5_3:15956102-15956121 | Msa0801790:CDS | 55.0% | |
| GAGACAGTAGCTGCTGTCCC+TGG | + | chr5_3:15955141-15955160 | Msa0801790:CDS | 60.0% | |
| AGTAGCTGCTGTCCCTGGCA+TGG | + | chr5_3:15955146-15955165 | Msa0801790:CDS | 60.0% | |
| !! | CGCCGATTTGAGCACAGTGG+TGG | + | chr5_3:15955201-15955220 | Msa0801790:CDS | 60.0% |
| AGGGAGGCTGCTGCTCCAAT+TGG | + | chr5_3:15956118-15956137 | Msa0801790:CDS | 60.0% | |
| TCCTCCGTCGTCGTCGTCTC+AGG | + | chr5_3:15953776-15953795 | Msa0801790:CDS | 65.0% | |
| CCTCCGTCGTCGTCGTCTCA+GGG | + | chr5_3:15953777-15953796 | Msa0801790:CDS | 65.0% | |
| CCACCCTGAGACGACGACGA+CGG | - | chr5_3:15953783-15953802 | None:intergenic | 65.0% | |
| TCGTCGTCTCAGGGTGGTGC+TGG | + | chr5_3:15953786-15953805 | Msa0801790:CDS | 65.0% | |
| GCTGCTGTCCCTGGCATGGT+AGG | + | chr5_3:15955150-15955169 | Msa0801790:CDS | 65.0% | |
| GCTGTCCCTGGCATGGTAGG+AGG | + | chr5_3:15955153-15955172 | Msa0801790:CDS | 65.0% | |
| CCCTGAGACGACGACGACGG+AGG | - | chr5_3:15953780-15953799 | None:intergenic | 70.0% | |
| CCGTCGTCGTCGTCTCAGGG+TGG | + | chr5_3:15953780-15953799 | Msa0801790:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 15953481 | 15956343 | 15953481 | ID=Msa0801790;Name=Msa0801790 |
| chr5_3 | mRNA | 15953481 | 15956343 | 15953481 | ID=Msa0801790-mRNA-1;Parent=Msa0801790;Name=Msa0801790-mRNA-1;_AED=0.04;_eAED=0.04;_QI=92|1|1|1|1|1|4|193|337 |
| chr5_3 | exon | 15953481 | 15953908 | 15953481 | ID=Msa0801790-mRNA-1:exon:6604;Parent=Msa0801790-mRNA-1 |
| chr5_3 | exon | 15954002 | 15954130 | 15954002 | ID=Msa0801790-mRNA-1:exon:6605;Parent=Msa0801790-mRNA-1 |
| chr5_3 | exon | 15955111 | 15955599 | 15955111 | ID=Msa0801790-mRNA-1:exon:6606;Parent=Msa0801790-mRNA-1 |
| chr5_3 | exon | 15956091 | 15956343 | 15956091 | ID=Msa0801790-mRNA-1:exon:6607;Parent=Msa0801790-mRNA-1 |
| chr5_3 | five_prime_UTR | 15953481 | 15953572 | 15953481 | ID=Msa0801790-mRNA-1:five_prime_utr;Parent=Msa0801790-mRNA-1 |
| chr5_3 | CDS | 15953573 | 15953908 | 15953573 | ID=Msa0801790-mRNA-1:cds;Parent=Msa0801790-mRNA-1 |
| chr5_3 | CDS | 15954002 | 15954130 | 15954002 | ID=Msa0801790-mRNA-1:cds;Parent=Msa0801790-mRNA-1 |
| chr5_3 | CDS | 15955111 | 15955599 | 15955111 | ID=Msa0801790-mRNA-1:cds;Parent=Msa0801790-mRNA-1 |
| chr5_3 | CDS | 15956091 | 15956150 | 15956091 | ID=Msa0801790-mRNA-1:cds;Parent=Msa0801790-mRNA-1 |
| chr5_3 | three_prime_UTR | 15956151 | 15956343 | 15956151 | ID=Msa0801790-mRNA-1:three_prime_utr;Parent=Msa0801790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
