AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0755940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0755940 MtrunA17_Chr4g0004091 72.143 140 18 1 81 220 127 245 3.49e-58 193
Msa0755940 MtrunA17_Chr4g0072161 87.500 96 12 0 364 459 154 249 1.03e-53 185
Msa0755940 MtrunA17_Chr4g0072141 83.333 96 16 0 364 459 2 97 5.29e-51 175
Msa0755940 MtrunA17_Chr4g0004831 63.121 141 31 1 80 220 121 240 1.45e-48 167
Msa0755940 MtrunA17_Chr4g0072181 76.042 96 23 0 364 459 81 176 1.32e-45 162
Msa0755940 MtrunA17_Chr2g0298001 76.768 99 23 0 364 462 283 381 2.07e-45 167
Msa0755940 MtrunA17_Chr4g0045551 58.140 129 20 3 271 365 354 482 1.53e-33 132
Msa0755940 MtrunA17_Chr2g0282041 96.296 54 2 0 1 54 147 200 5.34e-27 114
Msa0755940 MtrunA17_Chr8g0335841 46.903 113 52 1 354 458 233 345 5.23e-26 110
Msa0755940 MtrunA17_Chr4g0047751 88.889 54 6 0 1 54 158 211 3.72e-25 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0755940 AT3G11710.1 78.125 96 21 0 364 459 301 396 1.28e-46 171
Msa0755940 AT4G21660.3 81.250 64 12 0 1 64 163 226 1.58e-26 113
Msa0755940 AT4G21660.1 90.741 54 5 0 1 54 163 216 1.97e-25 109
Msa0755940 AT4G21660.2 89.091 55 6 0 1 55 163 217 2.29e-25 109
Msa0755940 AT3G13490.1 51.579 95 46 0 364 458 273 367 2.63e-25 109
Msa0755940 AT3G16170.1 43.972 141 51 2 80 220 141 253 7.46e-24 105
Msa0755940 AT1G73180.2 42.276 123 43 3 275 371 361 481 3.32e-18 87.4
Msa0755940 AT1G73180.1 43.220 118 37 4 275 365 361 475 2.45e-17 84.7

Find 195 sgRNAs with CRISPR-Local

Find 436 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGTCCTCACTACAAAATT+TGG 0.119205 5_2:-9898180 None:intergenic
ATCTCCAACATTCATGTTTC+AGG 0.170623 5_2:+9896802 Msa0755940:three_prime_UTR
GATGAGGATGGAAGGTTTAA+AGG 0.197412 5_2:+9897311 Msa0755940:three_prime_UTR
AGCAACTGCATTGTCTTTCT+TGG 0.198801 5_2:-9898356 None:intergenic
TTCAATAGGGAGATGTTTAA+TGG 0.206830 5_2:+9898082 Msa0755940:three_prime_UTR
TGAAGAAAGTTCTAAACTTT+TGG 0.209770 5_2:+9898575 Msa0755940:three_prime_UTR
ATGGAACATGTTTATGAAAT+TGG 0.220857 5_2:+9895862 Msa0755940:CDS
GGGTGAGGATTGAAGAATTT+GGG 0.228037 5_2:-9891249 None:intergenic
AGAAATGGACATTCACAAAA+TGG 0.249033 5_2:+9893621 Msa0755940:CDS
TTCTTGCAGGGGAGCGGCTT+TGG 0.257739 5_2:+9892636 Msa0755940:intron
CATGTTGATTCTATGGAGTT+TGG 0.274376 5_2:-9891270 None:intergenic
AACAAGGAAGATTAGAGTTA+AGG 0.280092 5_2:+9891472 Msa0755940:five_prime_UTR
TCTATTATTAATGTTGGTTC+TGG 0.280401 5_2:+9896621 Msa0755940:three_prime_UTR
GTAGAAACTTGGGTTGGTTT+TGG 0.284210 5_2:-9895173 None:intergenic
AATATATAATAAAATGAAAT+AGG 0.288228 5_2:-9894229 None:intergenic
AACAAATGCAAATTTAATTT+CGG 0.291040 5_2:-9898139 None:intergenic
GAGGCTGGTTCCAATTTGTT+AGG 0.292256 5_2:+9898456 Msa0755940:three_prime_UTR
TTACAGGAATAATGCTGATT+TGG 0.294830 5_2:+9896266 Msa0755940:intron
TGGGTGAGGATTGAAGAATT+TGG 0.313789 5_2:-9891250 None:intergenic
TTGAGTGGTGAGAATTATTA+AGG 0.316578 5_2:+9896000 Msa0755940:CDS
TACACTGTTGTTTGTGGAGT+TGG 0.322008 5_2:+9898532 Msa0755940:three_prime_UTR
TATTAGGAACAAGCAGAATA+TGG 0.326580 5_2:-9893581 None:intergenic
GGTGATTGTCCCTAACAAAT+TGG 0.330595 5_2:-9898466 None:intergenic
GAGTTTGCATGTTGATTCTA+TGG 0.331195 5_2:-9891277 None:intergenic
CTCTTCTCAGAGGAATTATT+AGG 0.335182 5_2:-9893597 None:intergenic
ATGTTAAGAGCTTACGCTTT+GGG 0.338436 5_2:-9897369 None:intergenic
GGCACTGAATATGATTTATC+AGG 0.345491 5_2:+9891433 Msa0755940:five_prime_UTR
GAGTTTGGAGGGAGGTTCTA+AGG 0.346039 5_2:+9898330 Msa0755940:three_prime_UTR
GATGGAAGGTTTAAAGGCTT+TGG 0.349857 5_2:+9897317 Msa0755940:three_prime_UTR
TCCATGAAGATGTACCTTGC+AGG 0.355379 5_2:-9896335 None:intergenic
CTCAAGCAGCTGGTTGTTTG+TGG 0.355654 5_2:+9895838 Msa0755940:CDS
GACATGCTGTTATTCGATTT+AGG 0.356277 5_2:+9898500 Msa0755940:three_prime_UTR
TCCTCCTACACTGTTGTTTG+TGG 0.357537 5_2:+9898526 Msa0755940:three_prime_UTR
CAACAACCTCTCCGCAATCT+TGG 0.359636 5_2:-9897271 None:intergenic
GAGTGTTGTATTCATTCAAT+AGG 0.362606 5_2:+9898068 Msa0755940:three_prime_UTR
TAAGACTGTAGCTGCTATTC+AGG 0.365878 5_2:+9895256 Msa0755940:CDS
AAAATCAAATATCATGCAAA+TGG 0.367440 5_2:+9896114 Msa0755940:three_prime_UTR
TCAAACCTTCTTCTTGTGCT+TGG 0.370945 5_2:+9894149 Msa0755940:CDS
GCCTTCTTCATTGGTCCTAC+AGG 0.371948 5_2:+9893905 Msa0755940:CDS
CCGAGAGAGACATGGGAAGA+AGG 0.379900 5_2:-9891208 None:intergenic
GAAATGGACATTCACAAAAT+GGG 0.380131 5_2:+9893622 Msa0755940:CDS
CTTGGAACTTCCCTGCTTTG+TGG 0.383269 5_2:+9894167 Msa0755940:CDS
CGAGAGAGACATGGGAAGAA+GGG 0.384593 5_2:-9891207 None:intergenic
AAGTCCTCACTACAAAATTT+GGG 0.385657 5_2:-9898179 None:intergenic
AGAATTGTTAGAAATGATTC+AGG 0.387877 5_2:+9897112 Msa0755940:three_prime_UTR
TCCTCTGAGAAGAGTAGAAA+TGG 0.388853 5_2:+9893606 Msa0755940:CDS
ACAGCATGTCGCCCTCTTGT+AGG 0.389300 5_2:-9898487 None:intergenic
ATGTTGATTCTATGGAGTTT+GGG 0.389627 5_2:-9891269 None:intergenic
CATTCATAATATTATTCATA+AGG 0.396552 5_2:-9898208 None:intergenic
TGCAGCAGATCCTAAGTTGC+TGG 0.399151 5_2:+9892401 Msa0755940:CDS
GCCTGCAAGGTACATCTTCA+TGG 0.400385 5_2:+9896334 Msa0755940:three_prime_UTR
CCGGCAATCTTGTTTATCAT+AGG 0.401245 5_2:-9895733 None:intergenic
AGACAAATTGCCTTCTTCAT+TGG 0.402869 5_2:+9893896 Msa0755940:CDS
CAGTTGCTTGATGTGCTTAC+CGG 0.404409 5_2:+9898371 Msa0755940:three_prime_UTR
TCTCTATGTGATGAATAATT+CGG 0.408368 5_2:+9893231 Msa0755940:CDS
AAATCAAATATCATGCAAAT+GGG 0.412981 5_2:+9896115 Msa0755940:three_prime_UTR
GATGAATATGACCTACATTC+AGG 0.413598 5_2:+9896943 Msa0755940:three_prime_UTR
TAGACTTCACTCCACCCTTC+AGG 0.413847 5_2:+9896160 Msa0755940:three_prime_UTR
ACCGTCTGCGAATTTGTTGC+TGG 0.417231 5_2:+9893139 Msa0755940:CDS
GGAAGATTAGAGTTAAGGTT+TGG 0.420647 5_2:+9891477 Msa0755940:five_prime_UTR
CATTGCACATGTTCTGAGTA+TGG 0.431001 5_2:+9897050 Msa0755940:three_prime_UTR
ATTGAAATCCAGGGAAATCT+TGG 0.431539 5_2:+9893089 Msa0755940:intron
CCTAACTTACTTGGTGACTC+TGG 0.436811 5_2:-9894990 None:intergenic
TAAACTATTTGCAGGCTGAT+TGG 0.439685 5_2:+9894964 Msa0755940:intron
TGCAGTTGGGTTGGCAGAAG+AGG 0.444560 5_2:-9895201 None:intergenic
CTTAATAAGATAAAATCATA+TGG 0.444688 5_2:-9896060 None:intergenic
GGAGTGAAGTCTATTTCAAT+AGG 0.446836 5_2:-9896150 None:intergenic
ATAAACTCTATTATTAATGT+TGG 0.455272 5_2:+9896615 Msa0755940:three_prime_UTR
TAATGACTACAACGACCTAA+TGG 0.455750 5_2:+9895960 Msa0755940:CDS
TAGGTCATATTCATCAGAAA+AGG 0.460102 5_2:-9896935 None:intergenic
TTCAAGCAATATCATTTCTA+CGG 0.466633 5_2:-9898556 None:intergenic
TGGACGTACTGCTGCGCCAC+CGG 0.468971 5_2:-9895752 None:intergenic
TAATGGGTCATTGTACTTCA+AGG 0.471047 5_2:+9894858 Msa0755940:CDS
GCTTTGGCAATCACCAATCC+TGG 0.472204 5_2:+9892652 Msa0755940:CDS
CCGAACTTGTGCATTCACTT+AGG 0.473843 5_2:-9896677 None:intergenic
TCAAGCAGCTGGTTGTTTGT+GGG 0.474857 5_2:+9895839 Msa0755940:CDS
AGTGTTGTATTCATTCAATA+GGG 0.476365 5_2:+9898069 Msa0755940:three_prime_UTR
TGGTAAACAATTTAGAAATG+AGG 0.479474 5_2:+9895882 Msa0755940:CDS
CCTATGATAAACAAGATTGC+CGG 0.480935 5_2:+9895733 Msa0755940:CDS
TGCTCAGCTGCAATAATTGA+TGG 0.481250 5_2:+9891501 Msa0755940:five_prime_UTR
AGGCTGGTTCCAATTTGTTA+GGG 0.481872 5_2:+9898457 Msa0755940:three_prime_UTR
ATACTCGCGACTTGGCTTAG+TGG 0.485895 5_2:+9893163 Msa0755940:CDS
TTCTGGTGTGAGGAAAAGAA+TGG 0.487616 5_2:-9891172 None:intergenic
AAGTTCCAAGCACAAGAAGA+AGG 0.489149 5_2:-9894154 None:intergenic
GAGAGAGAGGGACACGTTCA+AGG 0.489746 5_2:-9891360 None:intergenic
AAATCTTGGTGGAGCTCGAA+TGG 0.490176 5_2:+9893103 Msa0755940:CDS
GAAAATTTCTTCCAAGATTG+CGG 0.490605 5_2:+9897260 Msa0755940:three_prime_UTR
TTGCAATGCCACCACAAAGC+AGG 0.490757 5_2:-9894178 None:intergenic
AAGAAGAAGGTTTGAAAGGA+TGG 0.493952 5_2:-9894141 None:intergenic
TTGCTGGAATACTCGCGACT+TGG 0.497164 5_2:+9893155 Msa0755940:CDS
CCTAAGTGAATGCACAAGTT+CGG 0.499139 5_2:+9896677 Msa0755940:three_prime_UTR
TTCCAAACACCTACCAGTCC+AGG 0.501998 5_2:-9892670 None:intergenic
TGAGCATTGGAGAAACGAAA+TGG 0.505403 5_2:+9898229 Msa0755940:three_prime_UTR
ACTCCTACCACAACAACATC+AGG 0.506236 5_2:-9892274 None:intergenic
ATGTGGTTCTTGCAGGGGAG+CGG 0.508751 5_2:+9892630 Msa0755940:intron
AGGGACACGTTCAAGGGAAG+AGG 0.509430 5_2:-9891353 None:intergenic
GATTCTATGGAGTTTGGGTG+AGG 0.512401 5_2:-9891264 None:intergenic
TATATCAACCTCTAGCTGAC+AGG 0.513541 5_2:+9896763 Msa0755940:three_prime_UTR
AGCTGCTTGAGATAAAGTTC+TGG 0.514028 5_2:-9895826 None:intergenic
TCATTGTGGTGAGCTACAAA+TGG 0.517376 5_2:-9895772 None:intergenic
CCTTCTTCCCATGTCTCTCT+CGG 0.518393 5_2:+9891208 Msa0755940:five_prime_UTR
TGTGGTGGCATTGCAAACCT+TGG 0.524276 5_2:+9894185 Msa0755940:CDS
AAAACCTGAAACATGAATGT+TGG 0.526369 5_2:-9896806 None:intergenic
GTTCAAGGGAAGAGGATAAG+AGG 0.531277 5_2:-9891345 None:intergenic
GGAACTTCCCTGCTTTGTGG+TGG 0.531729 5_2:+9894170 Msa0755940:CDS
TGAACTCAGGAGTATGTGTA+AGG 0.534167 5_2:-9895912 None:intergenic
AGAACTTTATCTCAAGCAGC+TGG 0.534987 5_2:+9895828 Msa0755940:CDS
ATGTGATGAATAATTCGGTT+CGG 0.538369 5_2:+9893236 Msa0755940:CDS
AACACCTACCAGTCCAGGAT+TGG 0.539428 5_2:-9892665 None:intergenic
GAGAGAGACATGGGAAGAAG+GGG 0.539754 5_2:-9891206 None:intergenic
TGTGACCAATGCCTAGGTAC+AGG 0.544976 5_2:-9892453 None:intergenic
GTTCTGGCTTTAAGATGTTG+TGG 0.544981 5_2:+9896637 Msa0755940:three_prime_UTR
ATAATGCTGATTTGGTTATG+TGG 0.545874 5_2:+9896274 Msa0755940:three_prime_UTR
GATTGCTTGATGTGTGATCA+AGG 0.545966 5_2:+9897074 Msa0755940:three_prime_UTR
TTCAAAATGAACCTTACCTA+AGG 0.546225 5_2:+9893463 Msa0755940:CDS
TGTTACGCTCAGCGGTAATG+AGG 0.546564 5_2:-9898412 None:intergenic
AGAGAGAGGGACACGTTCAA+GGG 0.553027 5_2:-9891359 None:intergenic
AATCTTGGTGGAGCTCGAAT+GGG 0.553086 5_2:+9893104 Msa0755940:CDS
TCAAACAAGAACCTCTTGCA+TGG 0.554165 5_2:+9891411 Msa0755940:five_prime_UTR
GGCAATCACCAATCCTGGAC+TGG 0.554841 5_2:+9892657 Msa0755940:CDS
TGAGAGGGCCGAGAGAGACA+TGG 0.554946 5_2:-9891216 None:intergenic
TTAGTGTACAAAATCAGTGC+TGG 0.555279 5_2:-9893810 None:intergenic
ACCTGTAGGACCAATGAAGA+AGG 0.555735 5_2:-9893906 None:intergenic
TTAGAACCTCCCTCCAAACT+CGG 0.557286 5_2:-9898328 None:intergenic
GAGAGGGCCGAGAGAGACAT+GGG 0.558774 5_2:-9891215 None:intergenic
TCTGCATAGCTGAGTGCAAG+TGG 0.559278 5_2:-9893199 None:intergenic
ACAGATATTAGATTGTATGC+TGG 0.559718 5_2:+9893854 Msa0755940:CDS
GATGTTGTGGAAAGCGGTGA+AGG 0.561562 5_2:+9896650 Msa0755940:three_prime_UTR
TGCAATGCCACCACAAAGCA+GGG 0.561820 5_2:-9894177 None:intergenic
TCCACAAACAACAGTGTAGG+AGG 0.564000 5_2:-9898527 None:intergenic
TCTCTATTATTACAGTTGGA+GGG 0.566642 5_2:+9894018 Msa0755940:intron
GCACAAGAAGAAGGTTTGAA+AGG 0.568007 5_2:-9894145 None:intergenic
GAAATCCAGGGAAATCTTGG+TGG 0.568219 5_2:+9893092 Msa0755940:intron
AAATCACAGGTAGTGAACTC+AGG 0.569165 5_2:-9895925 None:intergenic
TTGCTTCAGATGAGGATGGA+AGG 0.572189 5_2:+9897303 Msa0755940:three_prime_UTR
TCTATTCACGAACTCACAAA+GGG 0.572459 5_2:+9896084 Msa0755940:three_prime_UTR
TTTGGGGCTAAGAGAGTGAG+AGG 0.574621 5_2:-9891232 None:intergenic
CTCAAGACCTGATGTTGTTG+TGG 0.574621 5_2:+9892267 Msa0755940:CDS
TGTGGTGGACGATATGCAGC+AGG 0.576118 5_2:-9895230 None:intergenic
ATAATATTATGAATGAGCAT+TGG 0.576428 5_2:+9898216 Msa0755940:three_prime_UTR
TCCAGCAACAAATTCGCAGA+CGG 0.581642 5_2:-9893140 None:intergenic
GGCACTTGCAGGAACTGCAT+TGG 0.583491 5_2:+9898044 Msa0755940:intron
CGTCTTGCTTCAGATGAGGA+TGG 0.585403 5_2:+9897299 Msa0755940:three_prime_UTR
GGTGAGGATTGAAGAATTTG+GGG 0.586947 5_2:-9891248 None:intergenic
TTGTGATTATTCCATCATGA+GGG 0.591225 5_2:-9891309 None:intergenic
ATATTCAGTGCCCATGCAAG+AGG 0.591294 5_2:-9891422 None:intergenic
CTGAATATGATTTATCAGGA+TGG 0.591889 5_2:+9891437 Msa0755940:five_prime_UTR
GTCTATTCACGAACTCACAA+AGG 0.592091 5_2:+9896083 Msa0755940:three_prime_UTR
TTCAGCTTTGTTACGCTCAG+CGG 0.592093 5_2:-9898420 None:intergenic
GCAGCTGGTTGTTTGTGGGA+TGG 0.593960 5_2:+9895843 Msa0755940:CDS
GGGCTTCTTAATGCAACATG+TGG 0.594840 5_2:+9894038 Msa0755940:CDS
TTTGTGATTATTCCATCATG+AGG 0.596174 5_2:-9891310 None:intergenic
TTGGAACCAGCCTCCTCCCA+AGG 0.597641 5_2:-9898447 None:intergenic
CTAATTTCTCAAAGCCTGCA+AGG 0.598822 5_2:+9896321 Msa0755940:three_prime_UTR
TGTAGCTGCTATTCAGGCAG+AGG 0.598925 5_2:+9895262 Msa0755940:CDS
TCACAAATAGACCTGAATGT+AGG 0.603433 5_2:-9896954 None:intergenic
CAATGTGAAAATTGAGAGAG+AGG 0.603665 5_2:-9891373 None:intergenic
GCTCAGCTGCAATAATTGAT+GGG 0.603788 5_2:+9891502 Msa0755940:five_prime_UTR
AAATGGACATTCACAAAATG+GGG 0.610443 5_2:+9893623 Msa0755940:CDS
GCGGCAATCGTATTCATGAC+CGG 0.611851 5_2:-9898390 None:intergenic
CAAACAAGAACCTCTTGCAT+GGG 0.612348 5_2:+9891412 Msa0755940:five_prime_UTR
TCCATTTCTACTCTTCTCAG+AGG 0.617031 5_2:-9893607 None:intergenic
CCGTACCTGTACCTAGGCAT+TGG 0.618440 5_2:+9892448 Msa0755940:CDS
TTATCTCAATGTGTTGCTAG+AGG 0.618737 5_2:+9896838 Msa0755940:three_prime_UTR
AATCAAATATCATGCAAATG+GGG 0.623882 5_2:+9896116 Msa0755940:three_prime_UTR
GGCTTCTTAATGCAACATGT+GGG 0.624011 5_2:+9894039 Msa0755940:CDS
ACTTTACGTCAAGTTCATTG+TGG 0.629848 5_2:-9895786 None:intergenic
AACACAAACCTGTCAGCTAG+AGG 0.631156 5_2:-9896771 None:intergenic
TACGCTCAGCGGTAATGAGG+CGG 0.632249 5_2:-9898409 None:intergenic
GATGTTTGACAAGTTATACC+AGG 0.635363 5_2:+9894882 Msa0755940:CDS
TGATGTGTGATCAAGGCCCA+TGG 0.637261 5_2:+9897081 Msa0755940:three_prime_UTR
TTCAAACCGAGTTTGGAGGG+AGG 0.637516 5_2:+9898322 Msa0755940:three_prime_UTR
CTTTAAGATGTTGTGGAAAG+CGG 0.640083 5_2:+9896644 Msa0755940:three_prime_UTR
GCTACAGTCTTAGCATGTGG+TGG 0.640695 5_2:-9895245 None:intergenic
TGATAGCAATTATTATCCTG+AGG 0.652576 5_2:+9896370 Msa0755940:three_prime_UTR
CTCGCGACTTGGCTTAGTGG+AGG 0.656754 5_2:+9893166 Msa0755940:CDS
TTGAATGCACTGCACCTGAA+GGG 0.657190 5_2:-9896174 None:intergenic
CCAATGCCTAGGTACAGGTA+CGG 0.657807 5_2:-9892448 None:intergenic
TAGGGACAATCACCTACAAG+AGG 0.660602 5_2:+9898475 Msa0755940:three_prime_UTR
GTAACACCGTACCTGTACCT+AGG 0.660864 5_2:+9892442 Msa0755940:CDS
TGGCATTGCAAACCTTGGAG+TGG 0.662345 5_2:+9894190 Msa0755940:CDS
AACTCCACAAACAACAGTGT+AGG 0.664752 5_2:-9898530 None:intergenic
AGAGAGACATGGGAAGAAGG+GGG 0.664927 5_2:-9891205 None:intergenic
GCAGCTACAGTCTTAGCATG+TGG 0.674519 5_2:-9895248 None:intergenic
AATGCACTGCACCTGAAGGG+TGG 0.675869 5_2:-9896171 None:intergenic
ATGATAAACAAGATTGCCGG+TGG 0.677791 5_2:+9895736 Msa0755940:CDS
AATGTGAAAATTGAGAGAGA+GGG 0.678684 5_2:-9891372 None:intergenic
TGCTAGAGGCTATTGATCCG+AGG 0.679387 5_2:+9896852 Msa0755940:three_prime_UTR
ATATTGAGTACTGAAGATCA+TGG 0.680453 5_2:+9893513 Msa0755940:CDS
TGTACGTCTTGCTTCAGATG+AGG 0.681852 5_2:+9897295 Msa0755940:three_prime_UTR
TGTTGAGTTTGCAACTGCAG+TGG 0.689687 5_2:+9897343 Msa0755940:three_prime_UTR
AGGGACAATCACCTACAAGA+GGG 0.691250 5_2:+9898476 Msa0755940:three_prime_UTR
TTTCTTCCAAGATTGCGGAG+AGG 0.695206 5_2:+9897265 Msa0755940:three_prime_UTR
ATAACACAGAAAATGTTGAG+TGG 0.702673 5_2:+9895985 Msa0755940:CDS
TTGGGGCTAAGAGAGTGAGA+GGG 0.745435 5_2:-9891231 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTAATTATGTATTTT+TGG + chr5_2:9891665-9891684 Msa0755940:intron 10.0%
!! ATTTGAAAATTTCATATAAA+AGG - chr5_2:9893384-9893403 None:intergenic 10.0%
!! TATAAAATGAAAAATAACAA+AGG - chr5_2:9895507-9895526 None:intergenic 10.0%
!!! TTATAAAATCTATTGTATTT+TGG + chr5_2:9896219-9896238 Msa0755940:intron 10.0%
!!! ATTTGTATTTTTATTTTTAC+AGG + chr5_2:9896250-9896269 Msa0755940:intron 10.0%
!! AAACATACTTACAAAAAAAA+AGG - chr5_2:9891769-9891788 None:intergenic 15.0%
!!! TTTTTTTGTAAGTATGTTTT+TGG + chr5_2:9891770-9891789 Msa0755940:intron 15.0%
!!! ATTATCTTTGTTATATTGAT+TGG + chr5_2:9892721-9892740 Msa0755940:intron 15.0%
!!! TTATCTTTGTTATATTGATT+GGG + chr5_2:9892722-9892741 Msa0755940:intron 15.0%
!!! TCATTGATTAATGTTTAATT+TGG + chr5_2:9893948-9893967 Msa0755940:intron 15.0%
!! TATAAAATATGGTCAAATAA+TGG + chr5_2:9894371-9894390 Msa0755940:intron 15.0%
!! AATAAAATCATTTCTTACAT+AGG + chr5_2:9895591-9895610 Msa0755940:intron 15.0%
!! CTTAATAAGATAAAATCATA+TGG - chr5_2:9896063-9896082 None:intergenic 15.0%
!!! CATATGATTTTATCTTATTA+AGG + chr5_2:9896061-9896080 Msa0755940:three_prime_UTR 15.0%
!!! AATTTTAATCAACTTCAATA+GGG - chr5_2:9896571-9896590 None:intergenic 15.0%
!! ATAAACTCTATTATTAATGT+TGG + chr5_2:9896615-9896634 Msa0755940:three_prime_UTR 15.0%
!!! AACAAATGCAAATTTAATTT+CGG - chr5_2:9898142-9898161 None:intergenic 15.0%
!! CATTCATAATATTATTCATA+AGG - chr5_2:9898211-9898230 None:intergenic 15.0%
!! CTCATTCTTATTCTTAATTT+GGG - chr5_2:9891736-9891755 None:intergenic 20.0%
!! ACTCATTCTTATTCTTAATT+TGG - chr5_2:9891737-9891756 None:intergenic 20.0%
!! TAACTCAAACAAATAATCAA+AGG - chr5_2:9892061-9892080 None:intergenic 20.0%
!!! AGAATTAGTTTCAAATTGTT+GGG + chr5_2:9892309-9892328 Msa0755940:intron 20.0%
!! ATCTTATATATGTATGTATG+TGG + chr5_2:9892613-9892632 Msa0755940:intron 20.0%
!!! ATTTGTTTGGTGTTTTTTTT+TGG + chr5_2:9892798-9892817 Msa0755940:intron 20.0%
!! ATCAATCTGCTAAAAATTTA+AGG + chr5_2:9892962-9892981 Msa0755940:intron 20.0%
!! TTGAATACTTAGTATATTGT+TGG + chr5_2:9892989-9893008 Msa0755940:intron 20.0%
!! TGAATACTTAGTATATTGTT+GGG + chr5_2:9892990-9893009 Msa0755940:intron 20.0%
!! TCGTTTAGTCAAATTATTTA+TGG + chr5_2:9893065-9893084 Msa0755940:intron 20.0%
!!! ATATGAAATTTTCAAATAGC+TGG + chr5_2:9893387-9893406 Msa0755940:intron 20.0%
!!! ATCATATATACTTTTCACAA+AGG - chr5_2:9893433-9893452 None:intergenic 20.0%
!!! ACATTTTCAGCTTTTAAAAA+TGG + chr5_2:9893702-9893721 Msa0755940:intron 20.0%
!! AATACTTAACAACAACAATT+TGG - chr5_2:9894109-9894128 None:intergenic 20.0%
!! ATGCTATTCAGTATAAAATA+TGG + chr5_2:9894360-9894379 Msa0755940:intron 20.0%
!! ATAATGGCTATAACTTAAAT+AGG + chr5_2:9894387-9894406 Msa0755940:intron 20.0%
!! TAATGGCTATAACTTAAATA+GGG + chr5_2:9894388-9894407 Msa0755940:intron 20.0%
!! AGAAATGAGCAAATAAAAAA+AGG - chr5_2:9894708-9894727 None:intergenic 20.0%
!!! ATCAAGATTTTTCACTATAA+TGG + chr5_2:9894841-9894860 Msa0755940:CDS 20.0%
!!! TCAAGATTTTTCACTATAAT+GGG + chr5_2:9894842-9894861 Msa0755940:CDS 20.0%
!! AAGAAATAGTAGAATAAACA+TGG - chr5_2:9895087-9895106 None:intergenic 20.0%
!! AAAATCAAATATCATGCAAA+TGG + chr5_2:9896114-9896133 Msa0755940:three_prime_UTR 20.0%
!! AAATCAAATATCATGCAAAT+GGG + chr5_2:9896115-9896134 Msa0755940:three_prime_UTR 20.0%
!!! GAATTTTAATCAACTTCAAT+AGG - chr5_2:9896572-9896591 None:intergenic 20.0%
!! TGAAAAAATTCAGTTAGATA+AGG - chr5_2:9897238-9897257 None:intergenic 20.0%
!!! TTAACATTTTTTCAACTTTG+TGG + chr5_2:9897385-9897404 Msa0755940:intron 20.0%
!!! AGGTTATATGATCTTTTAAT+AGG + chr5_2:9897716-9897735 Msa0755940:intron 20.0%
!!! GGTTATATGATCTTTTAATA+GGG + chr5_2:9897717-9897736 Msa0755940:intron 20.0%
!!! GTTATATGATCTTTTAATAG+GGG + chr5_2:9897718-9897737 Msa0755940:intron 20.0%
!!! AAAAATAATAAAGCACCAAA+TGG - chr5_2:9897776-9897795 None:intergenic 20.0%
!! ATAATATTATGAATGAGCAT+TGG + chr5_2:9898216-9898235 Msa0755940:three_prime_UTR 20.0%
!!! AAATTTTTTTTTCTGGTGTG+AGG - chr5_2:9891185-9891204 None:intergenic 25.0%
!!! AAGTTGTTTAAGTTGTTGTA+AGG + chr5_2:9891616-9891635 Msa0755940:intron 25.0%
! CAATTATACAAACATCTTGT+GGG - chr5_2:9891874-9891893 None:intergenic 25.0%
! TTGTATAATTGCCTGAATTA+AGG + chr5_2:9891883-9891902 Msa0755940:intron 25.0%
!! TTAACTAATCTTTTGAGCTT+TGG + chr5_2:9891987-9892006 Msa0755940:intron 25.0%
! AATAGTTATTTACGATCACA+AGG - chr5_2:9892087-9892106 None:intergenic 25.0%
! CAATGAAATCAGGAAAATAA+TGG - chr5_2:9892163-9892182 None:intergenic 25.0%
! AAAAAAGATGCAATGAAATC+AGG - chr5_2:9892173-9892192 None:intergenic 25.0%
!! CAGAATTAGTTTCAAATTGT+TGG + chr5_2:9892308-9892327 Msa0755940:intron 25.0%
! ATGAAACATCATTTGCATAA+CGG - chr5_2:9892353-9892372 None:intergenic 25.0%
!! TGTTTCATAATTTCGTTTTC+AGG + chr5_2:9892365-9892384 Msa0755940:intron 25.0%
!!! ATAATTTCGTTTTCAGGTTT+GGG + chr5_2:9892371-9892390 Msa0755940:intron 25.0%
!! ACAAAAGAGAAAATTTTTGC+AGG + chr5_2:9892473-9892492 Msa0755940:CDS 25.0%
! CCTATAATAACTATCAAGTT+AGG - chr5_2:9892510-9892529 None:intergenic 25.0%
!! CCTAACTTGATAGTTATTAT+AGG + chr5_2:9892507-9892526 Msa0755940:intron 25.0%
! AATAAAAGAGAAACAACTCA+AGG - chr5_2:9892704-9892723 None:intergenic 25.0%
!!! TAATGCACAAGATATTTTTG+TGG + chr5_2:9892833-9892852 Msa0755940:intron 25.0%
!! TAGCAATTTTTCTCTGAATT+TGG + chr5_2:9892870-9892889 Msa0755940:intron 25.0%
! TCTCTATGTGATGAATAATT+CGG + chr5_2:9893231-9893250 Msa0755940:CDS 25.0%
! ACGTTAAACAGATAAAAGAA+AGG - chr5_2:9893300-9893319 None:intergenic 25.0%
!! ATTTTCCATTGACATTATCT+TGG + chr5_2:9893356-9893375 Msa0755940:intron 25.0%
!!! CATTTGTTTTTCATATCCTT+TGG + chr5_2:9893774-9893793 Msa0755940:intron 25.0%
!! TTTTTCATATCCTTTGGATT+AGG + chr5_2:9893780-9893799 Msa0755940:intron 25.0%
!! GAACAATTTTATATACCTGT+AGG - chr5_2:9893923-9893942 None:intergenic 25.0%
! GTATTCTCTATTATTACAGT+TGG + chr5_2:9894014-9894033 Msa0755940:intron 25.0%
!! GTTGTTAAGTATTCTCTTTT+AGG + chr5_2:9894116-9894135 Msa0755940:intron 25.0%
! AAATAATTCAAGAACCAAAC+AGG - chr5_2:9894476-9894495 None:intergenic 25.0%
! TAAACCAAATATAGTAGTGA+TGG - chr5_2:9894537-9894556 None:intergenic 25.0%
!! TAAAAAAAGGAATGTTTTCG+TGG - chr5_2:9894695-9894714 None:intergenic 25.0%
! ATGAATCAGAAAACATGTTA+TGG + chr5_2:9894736-9894755 Msa0755940:intron 25.0%
! TGAATCAGAAAACATGTTAT+GGG + chr5_2:9894737-9894756 Msa0755940:intron 25.0%
! AATGAAAAATGCTTTCTTAG+TGG - chr5_2:9894795-9894814 None:intergenic 25.0%
!! TTTTGTTCTTTTTCCATTGA+AGG + chr5_2:9894818-9894837 Msa0755940:intron 25.0%
! AGAAACAATTAACAGATCAT+TGG - chr5_2:9895303-9895322 None:intergenic 25.0%
!!! GATTTTATTTCTCGATTATG+TGG - chr5_2:9895580-9895599 None:intergenic 25.0%
! AACAAACCTCCATAAAATTA+AGG - chr5_2:9895628-9895647 None:intergenic 25.0%
! ATGGAACATGTTTATGAAAT+TGG + chr5_2:9895862-9895881 Msa0755940:CDS 25.0%
! TGGTAAACAATTTAGAAATG+AGG + chr5_2:9895882-9895901 Msa0755940:CDS 25.0%
! ATAAGCCATATAAAAATCAC+AGG - chr5_2:9895941-9895960 None:intergenic 25.0%
! AATCAAATATCATGCAAATG+GGG + chr5_2:9896116-9896135 Msa0755940:three_prime_UTR 25.0%
!!! GTGGTTTTATTATTCTTCTA+TGG + chr5_2:9896293-9896312 Msa0755940:three_prime_UTR 25.0%
!!! TCTATTATTAATGTTGGTTC+TGG + chr5_2:9896621-9896640 Msa0755940:three_prime_UTR 25.0%
!! ACAATTCTGAATTTTTCCAT+GGG - chr5_2:9897100-9897119 None:intergenic 25.0%
!! AACAATTCTGAATTTTTCCA+TGG - chr5_2:9897101-9897120 None:intergenic 25.0%
! AGAATTGTTAGAAATGATTC+AGG + chr5_2:9897112-9897131 Msa0755940:three_prime_UTR 25.0%
! AAGTAGAAAATTAGAGAGTA+AGG + chr5_2:9897208-9897227 Msa0755940:intron 25.0%
! AGTAGAAAATTAGAGAGTAA+GGG + chr5_2:9897209-9897228 Msa0755940:intron 25.0%
!! GGGAAGTATAAATCAATATT+AGG + chr5_2:9897696-9897715 Msa0755940:intron 25.0%
!! AACAAAAAGCATAAAATTCC+TGG - chr5_2:9897930-9897949 None:intergenic 25.0%
!!! TTTGGTATTTTGATAAGATC+TGG + chr5_2:9897973-9897992 Msa0755940:intron 25.0%
!! AAGTTGAAGAACAAAGTTTT+TGG - chr5_2:9898009-9898028 None:intergenic 25.0%
! AGTGTTGTATTCATTCAATA+GGG + chr5_2:9898069-9898088 Msa0755940:three_prime_UTR 25.0%
! TTCAAGCAATATCATTTCTA+CGG - chr5_2:9898559-9898578 None:intergenic 25.0%
!!! TGAAGAAAGTTCTAAACTTT+TGG + chr5_2:9898575-9898594 Msa0755940:three_prime_UTR 25.0%
!!! AAGGGGGAAATTTTTTTTTC+TGG - chr5_2:9891192-9891211 None:intergenic 30.0%
!! ATGTTGATTCTATGGAGTTT+GGG - chr5_2:9891272-9891291 None:intergenic 30.0%
TTGTGATTATTCCATCATGA+GGG - chr5_2:9891312-9891331 None:intergenic 30.0%
TTTGTGATTATTCCATCATG+AGG - chr5_2:9891313-9891332 None:intergenic 30.0%
AATGTGAAAATTGAGAGAGA+GGG - chr5_2:9891375-9891394 None:intergenic 30.0%
! TCTCTCTCAATTTTCACATT+GGG + chr5_2:9891375-9891394 Msa0755940:five_prime_UTR 30.0%
CTGAATATGATTTATCAGGA+TGG + chr5_2:9891437-9891456 Msa0755940:five_prime_UTR 30.0%
AACAAGGAAGATTAGAGTTA+AGG + chr5_2:9891472-9891491 Msa0755940:five_prime_UTR 30.0%
GCAATTATACAAACATCTTG+TGG - chr5_2:9891875-9891894 None:intergenic 30.0%
TAACACACTCACAATATGAA+AGG - chr5_2:9891949-9891968 None:intergenic 30.0%
ATTCACATATTCCTTAAGAG+AGG - chr5_2:9892022-9892041 None:intergenic 30.0%
!! CATATTCTGAAGTTTACATC+AGG + chr5_2:9892128-9892147 Msa0755940:intron 30.0%
!!! TCATTGCATCTTTTTTTTGC+AGG + chr5_2:9892177-9892196 Msa0755940:intron 30.0%
!!! CATAATTTCGTTTTCAGGTT+TGG + chr5_2:9892370-9892389 Msa0755940:intron 30.0%
TGAAAACGATGAAGTCAATA+AGG + chr5_2:9892587-9892606 Msa0755940:intron 30.0%
ATTGAGGAGAATAAAAGTTG+AGG + chr5_2:9892926-9892945 Msa0755940:intron 30.0%
! TATTTATGGCATTGAAATCC+AGG + chr5_2:9893079-9893098 Msa0755940:intron 30.0%
! ATTTATGGCATTGAAATCCA+GGG + chr5_2:9893080-9893099 Msa0755940:intron 30.0%
ATGTGATGAATAATTCGGTT+CGG + chr5_2:9893236-9893255 Msa0755940:CDS 30.0%
CTTGTGAACATTAAGAATTC+AGG + chr5_2:9893324-9893343 Msa0755940:intron 30.0%
TTCAAAATGAACCTTACCTA+AGG + chr5_2:9893463-9893482 Msa0755940:CDS 30.0%
! ACATTTTTCTTCCTTAGGTA+AGG - chr5_2:9893477-9893496 None:intergenic 30.0%
TACCTAAGGAAGAAAAATGT+TGG + chr5_2:9893477-9893496 Msa0755940:CDS 30.0%
!! ATATTGAGTACTGAAGATCA+TGG + chr5_2:9893513-9893532 Msa0755940:CDS 30.0%
!! AAACTGAGAAGAGGTTTTAT+TGG - chr5_2:9893559-9893578 None:intergenic 30.0%
AATATGGAAAAACTGAGAAG+AGG - chr5_2:9893568-9893587 None:intergenic 30.0%
TATTAGGAACAAGCAGAATA+TGG - chr5_2:9893584-9893603 None:intergenic 30.0%
AGAAATGGACATTCACAAAA+TGG + chr5_2:9893621-9893640 Msa0755940:CDS 30.0%
GAAATGGACATTCACAAAAT+GGG + chr5_2:9893622-9893641 Msa0755940:CDS 30.0%
AAATGGACATTCACAAAATG+GGG + chr5_2:9893623-9893642 Msa0755940:CDS 30.0%
! TTGATCTTTCGACATTTTTC+AGG - chr5_2:9893671-9893690 None:intergenic 30.0%
ACAGATATTAGATTGTATGC+TGG + chr5_2:9893854-9893873 Msa0755940:CDS 30.0%
TTCTCTATTATTACAGTTGG+AGG + chr5_2:9894017-9894036 Msa0755940:intron 30.0%
TCTCTATTATTACAGTTGGA+GGG + chr5_2:9894018-9894037 Msa0755940:intron 30.0%
! TTTCAAGTCTGGTAATAGTA+TGG + chr5_2:9894426-9894445 Msa0755940:intron 30.0%
!!! GCTAGATTAGTTTTTCATGT+TGG + chr5_2:9894448-9894467 Msa0755940:intron 30.0%
CTTTCCATCACTACTATATT+TGG + chr5_2:9894530-9894549 Msa0755940:intron 30.0%
GAATGCATTTGTAGTTTCTT+CGG + chr5_2:9894595-9894614 Msa0755940:intron 30.0%
TTCTTCGGAAAAACTAACAA+AGG + chr5_2:9894610-9894629 Msa0755940:intron 30.0%
GAAAAATCTTGATCCTTCAA+TGG - chr5_2:9894834-9894853 None:intergenic 30.0%
ATTGTGTGTAAACTATTTGC+AGG + chr5_2:9894956-9894975 Msa0755940:intron 30.0%
CTTGAAGATTAAAAACCATC+AGG + chr5_2:9895054-9895073 Msa0755940:intron 30.0%
CCATAAAATTAAGGTCATCA+AGG - chr5_2:9895619-9895638 None:intergenic 30.0%
!! CCTTGATGACCTTAATTTTA+TGG + chr5_2:9895616-9895635 Msa0755940:intron 30.0%
! TGATGACCTTAATTTTATGG+AGG + chr5_2:9895619-9895638 Msa0755940:intron 30.0%
TGGAAGAAATTATAAGCAAC+TGG - chr5_2:9895672-9895691 None:intergenic 30.0%
AAGTAGTGAAAAGAATAGGT+AGG - chr5_2:9895700-9895719 None:intergenic 30.0%
CTGAAAGTAGTGAAAAGAAT+AGG - chr5_2:9895704-9895723 None:intergenic 30.0%
! CTATTCTTTTCACTACTTTC+AGG + chr5_2:9895702-9895721 Msa0755940:intron 30.0%
! CACTACCTGTGATTTTTATA+TGG + chr5_2:9895933-9895952 Msa0755940:CDS 30.0%
ATAACACAGAAAATGTTGAG+TGG + chr5_2:9895985-9896004 Msa0755940:CDS 30.0%
TTGAGTGGTGAGAATTATTA+AGG + chr5_2:9896000-9896019 Msa0755940:CDS 30.0%
! TTACAGGAATAATGCTGATT+TGG + chr5_2:9896266-9896285 Msa0755940:intron 30.0%
!! ATAATGCTGATTTGGTTATG+TGG + chr5_2:9896274-9896293 Msa0755940:three_prime_UTR 30.0%
TGATAGCAATTATTATCCTG+AGG + chr5_2:9896370-9896389 Msa0755940:three_prime_UTR 30.0%
CTTAATGACACATTAATAGC+AGG - chr5_2:9896444-9896463 None:intergenic 30.0%
AAAACCTGAAACATGAATGT+TGG - chr5_2:9896809-9896828 None:intergenic 30.0%
AGTTGCTACTGAAAAAATCA+TGG - chr5_2:9896902-9896921 None:intergenic 30.0%
!!! GATTTTTTCAGTAGCAACTT+AGG + chr5_2:9896903-9896922 Msa0755940:three_prime_UTR 30.0%
TAGGTCATATTCATCAGAAA+AGG - chr5_2:9896938-9896957 None:intergenic 30.0%
!! CAATAACTTGCCAACATTTT+TGG + chr5_2:9897022-9897041 Msa0755940:three_prime_UTR 30.0%
GAAAATTTCTTCCAAGATTG+CGG + chr5_2:9897260-9897279 Msa0755940:three_prime_UTR 30.0%
GAATCCAGAAACAAATTACT+TGG - chr5_2:9897439-9897458 None:intergenic 30.0%
AAAGCAAGATACTAAATACC+TGG - chr5_2:9897579-9897598 None:intergenic 30.0%
!!! ATGACCAAGGTTTTAAATCT+CGG + chr5_2:9897600-9897619 Msa0755940:intron 30.0%
! ATAACCGAGATTTAAAACCT+TGG - chr5_2:9897607-9897626 None:intergenic 30.0%
CTATTATTGTGCTTGTGATA+TGG + chr5_2:9897663-9897682 Msa0755940:intron 30.0%
! AAAAGCATAAAATTCCTGGT+GGG - chr5_2:9897926-9897945 None:intergenic 30.0%
! AAAAAGCATAAAATTCCTGG+TGG - chr5_2:9897927-9897946 None:intergenic 30.0%
!!! TGCATACATGTTGTTGATTT+TGG + chr5_2:9897955-9897974 Msa0755940:intron 30.0%
! GAGTGTTGTATTCATTCAAT+AGG + chr5_2:9898068-9898087 Msa0755940:three_prime_UTR 30.0%
TTCAATAGGGAGATGTTTAA+TGG + chr5_2:9898082-9898101 Msa0755940:three_prime_UTR 30.0%
AAGTCCTCACTACAAAATTT+GGG - chr5_2:9898182-9898201 None:intergenic 30.0%
TAAGTCCTCACTACAAAATT+TGG - chr5_2:9898183-9898202 None:intergenic 30.0%
TAACAAAGCTGAAAAATCCT+TGG + chr5_2:9898430-9898449 Msa0755940:three_prime_UTR 30.0%
AACAAAGCTGAAAAATCCTT+GGG + chr5_2:9898431-9898450 Msa0755940:three_prime_UTR 30.0%
!! AACTTTTGGAAATTGTATGC+TGG + chr5_2:9898589-9898608 Msa0755940:three_prime_UTR 30.0%
!! CATGTTGATTCTATGGAGTT+TGG - chr5_2:9891273-9891292 None:intergenic 35.0%
!! GAGTTTGCATGTTGATTCTA+TGG - chr5_2:9891280-9891299 None:intergenic 35.0%
!! TCATTTTTGAACCCTCATGA+TGG + chr5_2:9891298-9891317 Msa0755940:five_prime_UTR 35.0%
CAATGTGAAAATTGAGAGAG+AGG - chr5_2:9891376-9891395 None:intergenic 35.0%
! CTCTCTCTCAATTTTCACAT+TGG + chr5_2:9891374-9891393 Msa0755940:five_prime_UTR 35.0%
! GGCACTGAATATGATTTATC+AGG + chr5_2:9891433-9891452 Msa0755940:five_prime_UTR 35.0%
! ATGGTCTGAAGCAAAAAACA+AGG + chr5_2:9891456-9891475 Msa0755940:five_prime_UTR 35.0%
GGAAGATTAGAGTTAAGGTT+TGG + chr5_2:9891477-9891496 Msa0755940:five_prime_UTR 35.0%
! AGTAGTGTTGTTAGAGTTTG+AGG + chr5_2:9891702-9891721 Msa0755940:intron 35.0%
AATTGCCTGAATTAAGGTGT+AGG + chr5_2:9891889-9891908 Msa0755940:intron 35.0%
TGTGAGTGTGTTATGATTCA+AGG + chr5_2:9891956-9891975 Msa0755940:intron 35.0%
GGAATGTAAATCCTCTCTTA+AGG + chr5_2:9892008-9892027 Msa0755940:intron 35.0%
TTCAAAAACACCAGCAACTT+AGG - chr5_2:9892414-9892433 None:intergenic 35.0%
AATGATGTAAGCATGTCTGA+TGG + chr5_2:9892532-9892551 Msa0755940:intron 35.0%
! TGTTGTGCACAAGATTTGTT+TGG + chr5_2:9892785-9892804 Msa0755940:intron 35.0%
!!! TGGTGTTTTTTTTTGGAGTG+AGG + chr5_2:9892805-9892824 Msa0755940:intron 35.0%
!! ACAAGATATTTTTGTGGCCT+TGG + chr5_2:9892839-9892858 Msa0755940:intron 35.0%
AGTCGAAACACAATGTATTG+AGG + chr5_2:9892910-9892929 Msa0755940:intron 35.0%
ATTGAAATCCAGGGAAATCT+TGG + chr5_2:9893089-9893108 Msa0755940:intron 35.0%
AGGTACCAAGATAATGTCAA+TGG - chr5_2:9893364-9893383 None:intergenic 35.0%
CTCTTCTCAGAGGAATTATT+AGG - chr5_2:9893600-9893619 None:intergenic 35.0%
! ATCTTCGTATCAGTTTTCTG+AGG + chr5_2:9893737-9893756 Msa0755940:intron 35.0%
TTAGTGTACAAAATCAGTGC+TGG - chr5_2:9893813-9893832 None:intergenic 35.0%
!!! GCACTGATTTTGTACACTAA+CGG + chr5_2:9893813-9893832 Msa0755940:CDS 35.0%
!!! CACTGATTTTGTACACTAAC+GGG + chr5_2:9893814-9893833 Msa0755940:CDS 35.0%
AGACAAATTGCCTTCTTCAT+TGG + chr5_2:9893896-9893915 Msa0755940:CDS 35.0%
AAGAAGAAGGTTTGAAAGGA+TGG - chr5_2:9894144-9894163 None:intergenic 35.0%
TTATACTGAATAGCATGTCG+CGG - chr5_2:9894356-9894375 None:intergenic 35.0%
! TTTTCATGTTGGTACCTGTT+TGG + chr5_2:9894459-9894478 Msa0755940:intron 35.0%
TTCAATCATCACACTTGTGA+TGG + chr5_2:9894646-9894665 Msa0755940:intron 35.0%
! ATGGGAGAATATTTTGCTGA+TGG + chr5_2:9894755-9894774 Msa0755940:intron 35.0%
! TAATGGGTCATTGTACTTCA+AGG + chr5_2:9894858-9894877 Msa0755940:CDS 35.0%
GATGTTTGACAAGTTATACC+AGG + chr5_2:9894882-9894901 Msa0755940:CDS 35.0%
TAAACTATTTGCAGGCTGAT+TGG + chr5_2:9894964-9894983 Msa0755940:intron 35.0%
AAACATGGTAAAGAACCTGA+TGG - chr5_2:9895072-9895091 None:intergenic 35.0%
! AGAGGCTTTTGTAGAAACTT+GGG - chr5_2:9895186-9895205 None:intergenic 35.0%
! AAGAGGCTTTTGTAGAAACT+TGG - chr5_2:9895187-9895206 None:intergenic 35.0%
ACTTCAGCAATAAGTTTGCA+TGG + chr5_2:9895343-9895362 Msa0755940:intron 35.0%
!! ATAATGGATGGTGACACAAA+AGG - chr5_2:9895394-9895413 None:intergenic 35.0%
! GCGAAAGTCATAATAATGGA+TGG - chr5_2:9895406-9895425 None:intergenic 35.0%
CACAGCGAAAGTCATAATAA+TGG - chr5_2:9895410-9895429 None:intergenic 35.0%
TCTGATATGAGATGTGAAGT+TGG + chr5_2:9895459-9895478 Msa0755940:intron 35.0%
CTGATATGAGATGTGAAGTT+GGG + chr5_2:9895460-9895479 Msa0755940:intron 35.0%
TGATATGAGATGTGAAGTTG+GGG + chr5_2:9895461-9895480 Msa0755940:intron 35.0%
AGACCACTGTTAATAGATGA+GGG - chr5_2:9895545-9895564 None:intergenic 35.0%
AAAAGAATAGGTAGGAGGAA+TGG - chr5_2:9895692-9895711 None:intergenic 35.0%
TAGTGAAAAGAATAGGTAGG+AGG - chr5_2:9895697-9895716 None:intergenic 35.0%
CCTATGATAAACAAGATTGC+CGG + chr5_2:9895733-9895752 Msa0755940:CDS 35.0%
ACTTTACGTCAAGTTCATTG+TGG - chr5_2:9895789-9895808 None:intergenic 35.0%
TAATGACTACAACGACCTAA+TGG + chr5_2:9895960-9895979 Msa0755940:CDS 35.0%
! TTTTCTGTGTTATCGCCATT+AGG - chr5_2:9895978-9895997 None:intergenic 35.0%
TCTATTCACGAACTCACAAA+GGG + chr5_2:9896084-9896103 Msa0755940:three_prime_UTR 35.0%
GGAGTGAAGTCTATTTCAAT+AGG - chr5_2:9896153-9896172 None:intergenic 35.0%
!! TGATCAACAAAAAGTACCTC+AGG - chr5_2:9896389-9896408 None:intergenic 35.0%
!! CTTTAAGATGTTGTGGAAAG+CGG + chr5_2:9896644-9896663 Msa0755940:three_prime_UTR 35.0%
ATCTCCAACATTCATGTTTC+AGG + chr5_2:9896802-9896821 Msa0755940:three_prime_UTR 35.0%
! TTATCTCAATGTGTTGCTAG+AGG + chr5_2:9896838-9896857 Msa0755940:three_prime_UTR 35.0%
!! GTACAAAAGTCGTTTTACCT+CGG - chr5_2:9896872-9896891 None:intergenic 35.0%
GATGAATATGACCTACATTC+AGG + chr5_2:9896943-9896962 Msa0755940:three_prime_UTR 35.0%
TCACAAATAGACCTGAATGT+AGG - chr5_2:9896957-9896976 None:intergenic 35.0%
!!! AACTTGCCAACATTTTTGGT+TGG + chr5_2:9897026-9897045 Msa0755940:three_prime_UTR 35.0%
CAATGACCAACCAAAAATGT+TGG - chr5_2:9897035-9897054 None:intergenic 35.0%
ATGTTAAGAGCTTACGCTTT+GGG - chr5_2:9897372-9897391 None:intergenic 35.0%
AATGTTAAGAGCTTACGCTT+TGG - chr5_2:9897373-9897392 None:intergenic 35.0%
!! GCTTCCAAGTAATTTGTTTC+TGG + chr5_2:9897432-9897451 Msa0755940:intron 35.0%
TTGTGATATGGTCTCTATTC+AGG + chr5_2:9897675-9897694 Msa0755940:intron 35.0%
TGTGATATGGTCTCTATTCA+GGG + chr5_2:9897676-9897695 Msa0755940:intron 35.0%
!!! GTGATCACTTTTTCTCCATT+TGG + chr5_2:9897758-9897777 Msa0755940:intron 35.0%
AAAGCATAAAATTCCTGGTG+GGG - chr5_2:9897925-9897944 None:intergenic 35.0%
! CAACTTTTTATCTGCACTTG+TGG + chr5_2:9898023-9898042 Msa0755940:intron 35.0%
! TAGTCCCAAATTTTGTAGTG+AGG + chr5_2:9898175-9898194 Msa0755940:three_prime_UTR 35.0%
!! AGCATTTTTCAAACCGAGTT+TGG + chr5_2:9898315-9898334 Msa0755940:three_prime_UTR 35.0%
!! ATTTTTCAAACCGAGTTTGG+AGG + chr5_2:9898318-9898337 Msa0755940:three_prime_UTR 35.0%
!! TTTTTCAAACCGAGTTTGGA+GGG + chr5_2:9898319-9898338 Msa0755940:three_prime_UTR 35.0%
GACATGCTGTTATTCGATTT+AGG + chr5_2:9898500-9898519 Msa0755940:three_prime_UTR 35.0%
GGTGAGGATTGAAGAATTTG+GGG - chr5_2:9891251-9891270 None:intergenic 40.0%
GGGTGAGGATTGAAGAATTT+GGG - chr5_2:9891252-9891271 None:intergenic 40.0%
TGGGTGAGGATTGAAGAATT+TGG - chr5_2:9891253-9891272 None:intergenic 40.0%
TCAAACAAGAACCTCTTGCA+TGG + chr5_2:9891411-9891430 Msa0755940:five_prime_UTR 40.0%
CAAACAAGAACCTCTTGCAT+GGG + chr5_2:9891412-9891431 Msa0755940:five_prime_UTR 40.0%
TGCTCAGCTGCAATAATTGA+TGG + chr5_2:9891501-9891520 Msa0755940:five_prime_UTR 40.0%
GCTCAGCTGCAATAATTGAT+GGG + chr5_2:9891502-9891521 Msa0755940:five_prime_UTR 40.0%
!!! GTTCTGTTTTTGCTGATTGC+TGG + chr5_2:9891545-9891564 Msa0755940:intron 40.0%
ACACTCCTACACCTTAATTC+AGG - chr5_2:9891897-9891916 None:intergenic 40.0%
! TTGGGTATCCGCTTCTTTTA+AGG + chr5_2:9892327-9892346 Msa0755940:intron 40.0%
CATAACGGCCTTAAAAGAAG+CGG - chr5_2:9892338-9892357 None:intergenic 40.0%
ATTAGTACATCACTCACGCA+AGG - chr5_2:9892563-9892582 None:intergenic 40.0%
TGCGTGAGTGATGTACTAAT+AGG + chr5_2:9892563-9892582 Msa0755940:intron 40.0%
GCGTGAGTGATGTACTAATA+GGG + chr5_2:9892564-9892583 Msa0755940:intron 40.0%
TGTATGTATGTGGTTCTTGC+AGG + chr5_2:9892623-9892642 Msa0755940:intron 40.0%
GTATGTATGTGGTTCTTGCA+GGG + chr5_2:9892624-9892643 Msa0755940:intron 40.0%
TATGTATGTGGTTCTTGCAG+GGG + chr5_2:9892625-9892644 Msa0755940:intron 40.0%
ACTGGTAGGTGTTTGGAAAT+GGG + chr5_2:9892675-9892694 Msa0755940:intron 40.0%
AAATTGCTATATCTGCGCCA+AGG - chr5_2:9892859-9892878 None:intergenic 40.0%
! GAATTTGGTTCATTTGACCG+AGG + chr5_2:9892885-9892904 Msa0755940:intron 40.0%
! CGCCAACATTTTTCTTCCTT+AGG - chr5_2:9893482-9893501 None:intergenic 40.0%
! TCCTCTGAGAAGAGTAGAAA+TGG + chr5_2:9893606-9893625 Msa0755940:CDS 40.0%
TCCATTTCTACTCTTCTCAG+AGG - chr5_2:9893610-9893629 None:intergenic 40.0%
TGGATCTTCACCTAATCCAA+AGG - chr5_2:9893793-9893812 None:intergenic 40.0%
GGCTTCTTAATGCAACATGT+GGG + chr5_2:9894039-9894058 Msa0755940:CDS 40.0%
GCACAAGAAGAAGGTTTGAA+AGG - chr5_2:9894148-9894167 None:intergenic 40.0%
TCAAACCTTCTTCTTGTGCT+TGG + chr5_2:9894149-9894168 Msa0755940:CDS 40.0%
AAGTTCCAAGCACAAGAAGA+AGG - chr5_2:9894157-9894176 None:intergenic 40.0%
!!! CTTTTTTTTGCTCCACTCCA+AGG - chr5_2:9894205-9894224 None:intergenic 40.0%
CTTGGAGTGGAGCAAAAAAA+AGG + chr5_2:9894203-9894222 Msa0755940:CDS 40.0%
ATTGTTTGCGAATGTCAGTG+AGG + chr5_2:9894294-9894313 Msa0755940:intron 40.0%
TAAATAGGGTGCAGACTTGA+TGG + chr5_2:9894402-9894421 Msa0755940:intron 40.0%
!!! GACTTGATGGTTTTCAAGTC+TGG + chr5_2:9894415-9894434 Msa0755940:intron 40.0%
ATTCGCGAAGATAGCGAATA+AGG - chr5_2:9894579-9894598 None:intergenic 40.0%
CTGATGTCACCTAACTTACT+TGG - chr5_2:9895002-9895021 None:intergenic 40.0%
! GAATACCCTGAACTTTTTGC+AGG + chr5_2:9895143-9895162 Msa0755940:intron 40.0%
CTTGACCTGCAAAAAGTTCA+GGG - chr5_2:9895151-9895170 None:intergenic 40.0%
!!! GTAGAAACTTGGGTTGGTTT+TGG - chr5_2:9895176-9895195 None:intergenic 40.0%
! GCTTTTGTAGAAACTTGGGT+TGG - chr5_2:9895182-9895201 None:intergenic 40.0%
TAAGACTGTAGCTGCTATTC+AGG + chr5_2:9895256-9895275 Msa0755940:CDS 40.0%
GATATGAGATGTGAAGTTGG+GGG + chr5_2:9895462-9895481 Msa0755940:intron 40.0%
ATATGAGATGTGAAGTTGGG+GGG + chr5_2:9895463-9895482 Msa0755940:intron 40.0%
CATCCCTCATCTATTAACAG+TGG + chr5_2:9895539-9895558 Msa0755940:intron 40.0%
GAGACCACTGTTAATAGATG+AGG - chr5_2:9895546-9895565 None:intergenic 40.0%
! CCGGCAATCTTGTTTATCAT+AGG - chr5_2:9895736-9895755 None:intergenic 40.0%
ATGATAAACAAGATTGCCGG+TGG + chr5_2:9895736-9895755 Msa0755940:CDS 40.0%
TCATTGTGGTGAGCTACAAA+TGG - chr5_2:9895775-9895794 None:intergenic 40.0%
AGCTGCTTGAGATAAAGTTC+TGG - chr5_2:9895829-9895848 None:intergenic 40.0%
AGAACTTTATCTCAAGCAGC+TGG + chr5_2:9895828-9895847 Msa0755940:CDS 40.0%
! TGAACTCAGGAGTATGTGTA+AGG - chr5_2:9895915-9895934 None:intergenic 40.0%
AAATCACAGGTAGTGAACTC+AGG - chr5_2:9895928-9895947 None:intergenic 40.0%
GTCTATTCACGAACTCACAA+AGG + chr5_2:9896083-9896102 Msa0755940:three_prime_UTR 40.0%
CTAATTTCTCAAAGCCTGCA+AGG + chr5_2:9896321-9896340 Msa0755940:three_prime_UTR 40.0%
!! GTTCTGGCTTTAAGATGTTG+TGG + chr5_2:9896637-9896656 Msa0755940:three_prime_UTR 40.0%
CCTAAGTGAATGCACAAGTT+CGG + chr5_2:9896677-9896696 Msa0755940:three_prime_UTR 40.0%
TATATCAACCTCTAGCTGAC+AGG + chr5_2:9896763-9896782 Msa0755940:three_prime_UTR 40.0%
! CATTGCACATGTTCTGAGTA+TGG + chr5_2:9897050-9897069 Msa0755940:three_prime_UTR 40.0%
GATTGCTTGATGTGTGATCA+AGG + chr5_2:9897074-9897093 Msa0755940:three_prime_UTR 40.0%
GATGAGGATGGAAGGTTTAA+AGG + chr5_2:9897311-9897330 Msa0755940:three_prime_UTR 40.0%
GATGGAAGGTTTAAAGGCTT+TGG + chr5_2:9897317-9897336 Msa0755940:three_prime_UTR 40.0%
TCTATCTAGCATTAGATGCC+AGG + chr5_2:9897558-9897577 Msa0755940:intron 40.0%
GTATCTTGCTTTCATGACCA+AGG + chr5_2:9897587-9897606 Msa0755940:intron 40.0%
! ATGCTTTGAGTGTAGTGAAC+TGG + chr5_2:9897805-9897824 Msa0755940:intron 40.0%
!!! ATATTTTTTGCTTCCCCACC+AGG + chr5_2:9897909-9897928 Msa0755940:intron 40.0%
!! TGAGCATTGGAGAAACGAAA+TGG + chr5_2:9898229-9898248 Msa0755940:three_prime_UTR 40.0%
AGCAACTGCATTGTCTTTCT+TGG - chr5_2:9898359-9898378 None:intergenic 40.0%
AAAGCTGAAAAATCCTTGGG+AGG + chr5_2:9898434-9898453 Msa0755940:three_prime_UTR 40.0%
!! AGGCTGGTTCCAATTTGTTA+GGG + chr5_2:9898457-9898476 Msa0755940:three_prime_UTR 40.0%
GGTGATTGTCCCTAACAAAT+TGG - chr5_2:9898469-9898488 None:intergenic 40.0%
AACTCCACAAACAACAGTGT+AGG - chr5_2:9898533-9898552 None:intergenic 40.0%
! TACACTGTTGTTTGTGGAGT+TGG + chr5_2:9898532-9898551 Msa0755940:three_prime_UTR 40.0%
GATTCTATGGAGTTTGGGTG+AGG - chr5_2:9891267-9891286 None:intergenic 45.0%
GTTCAAGGGAAGAGGATAAG+AGG - chr5_2:9891348-9891367 None:intergenic 45.0%
ATATTCAGTGCCCATGCAAG+AGG - chr5_2:9891425-9891444 None:intergenic 45.0%
CTCAAGACCTGATGTTGTTG+TGG + chr5_2:9892267-9892286 Msa0755940:CDS 45.0%
AGACCTGATGTTGTTGTGGT+AGG + chr5_2:9892271-9892290 Msa0755940:intron 45.0%
ACTCCTACCACAACAACATC+AGG - chr5_2:9892277-9892296 None:intergenic 45.0%
! CTCTTTTGTGACCAATGCCT+AGG - chr5_2:9892462-9892481 None:intergenic 45.0%
GACTGGTAGGTGTTTGGAAA+TGG + chr5_2:9892674-9892693 Msa0755940:intron 45.0%
CATTGTGTTTCGACTGTCCT+CGG - chr5_2:9892905-9892924 None:intergenic 45.0%
GAAATCCAGGGAAATCTTGG+TGG + chr5_2:9893092-9893111 Msa0755940:intron 45.0%
AAATCTTGGTGGAGCTCGAA+TGG + chr5_2:9893103-9893122 Msa0755940:CDS 45.0%
AATCTTGGTGGAGCTCGAAT+GGG + chr5_2:9893104-9893123 Msa0755940:CDS 45.0%
TCCAGCAACAAATTCGCAGA+CGG - chr5_2:9893143-9893162 None:intergenic 45.0%
ACCTGTAGGACCAATGAAGA+AGG - chr5_2:9893909-9893928 None:intergenic 45.0%
GGGCTTCTTAATGCAACATG+TGG + chr5_2:9894038-9894057 Msa0755940:CDS 45.0%
AGTTCGAGATACTACTGACC+TGG - chr5_2:9894903-9894922 None:intergenic 45.0%
! CCTAACTTACTTGGTGACTC+TGG - chr5_2:9894993-9895012 None:intergenic 45.0%
CCAGAGTCACCAAGTAAGTT+AGG + chr5_2:9894990-9895009 Msa0755940:intron 45.0%
CCTTGACCTGCAAAAAGTTC+AGG - chr5_2:9895152-9895171 None:intergenic 45.0%
! CCTGAACTTTTTGCAGGTCA+AGG + chr5_2:9895149-9895168 Msa0755940:intron 45.0%
! AGGTTTTTGTGCAGTTGGGT+TGG - chr5_2:9895213-9895232 None:intergenic 45.0%
! CAGCAGGTTTTTGTGCAGTT+GGG - chr5_2:9895217-9895236 None:intergenic 45.0%
GCAACTGGCATCAGAATACT+TGG - chr5_2:9895657-9895676 None:intergenic 45.0%
TCAAGCAGCTGGTTGTTTGT+GGG + chr5_2:9895839-9895858 Msa0755940:CDS 45.0%
TTGAATGCACTGCACCTGAA+GGG - chr5_2:9896177-9896196 None:intergenic 45.0%
TTTGAATGCACTGCACCTGA+AGG - chr5_2:9896178-9896197 None:intergenic 45.0%
TCCATGAAGATGTACCTTGC+AGG - chr5_2:9896338-9896357 None:intergenic 45.0%
CCGAACTTGTGCATTCACTT+AGG - chr5_2:9896680-9896699 None:intergenic 45.0%
AACACAAACCTGTCAGCTAG+AGG - chr5_2:9896774-9896793 None:intergenic 45.0%
TTTCTTCCAAGATTGCGGAG+AGG + chr5_2:9897265-9897284 Msa0755940:three_prime_UTR 45.0%
TGTACGTCTTGCTTCAGATG+AGG + chr5_2:9897295-9897314 Msa0755940:three_prime_UTR 45.0%
TTGCTTCAGATGAGGATGGA+AGG + chr5_2:9897303-9897322 Msa0755940:three_prime_UTR 45.0%
TGTTGAGTTTGCAACTGCAG+TGG + chr5_2:9897343-9897362 Msa0755940:three_prime_UTR 45.0%
TTAGAACCTCCCTCCAAACT+CGG - chr5_2:9898331-9898350 None:intergenic 45.0%
CAGTTGCTTGATGTGCTTAC+CGG + chr5_2:9898371-9898390 Msa0755940:three_prime_UTR 45.0%
!! TTCAGCTTTGTTACGCTCAG+CGG - chr5_2:9898423-9898442 None:intergenic 45.0%
! GAGGCTGGTTCCAATTTGTT+AGG + chr5_2:9898456-9898475 Msa0755940:three_prime_UTR 45.0%
TAGGGACAATCACCTACAAG+AGG + chr5_2:9898475-9898494 Msa0755940:three_prime_UTR 45.0%
AGGGACAATCACCTACAAGA+GGG + chr5_2:9898476-9898495 Msa0755940:three_prime_UTR 45.0%
! TCCTCCTACACTGTTGTTTG+TGG + chr5_2:9898526-9898545 Msa0755940:three_prime_UTR 45.0%
TCCACAAACAACAGTGTAGG+AGG - chr5_2:9898530-9898549 None:intergenic 45.0%
!! AATATATAATAAAATGAAAT+AGG - chr5_2:9894232-9894251 None:intergenic 5.0%
AGAGAGACATGGGAAGAAGG+GGG - chr5_2:9891208-9891227 None:intergenic 50.0%
GAGAGAGACATGGGAAGAAG+GGG - chr5_2:9891209-9891228 None:intergenic 50.0%
CGAGAGAGACATGGGAAGAA+GGG - chr5_2:9891210-9891229 None:intergenic 50.0%
CCTTCTTCCCATGTCTCTCT+CGG + chr5_2:9891208-9891227 Msa0755940:five_prime_UTR 50.0%
TTGGGGCTAAGAGAGTGAGA+GGG - chr5_2:9891234-9891253 None:intergenic 50.0%
! TTTGGGGCTAAGAGAGTGAG+AGG - chr5_2:9891235-9891254 None:intergenic 50.0%
AGAGAGAGGGACACGTTCAA+GGG - chr5_2:9891362-9891381 None:intergenic 50.0%
TGCAGCAGATCCTAAGTTGC+TGG + chr5_2:9892401-9892420 Msa0755940:CDS 50.0%
GTAACACCGTACCTGTACCT+AGG + chr5_2:9892442-9892461 Msa0755940:CDS 50.0%
CCAATGCCTAGGTACAGGTA+CGG - chr5_2:9892451-9892470 None:intergenic 50.0%
TGTGACCAATGCCTAGGTAC+AGG - chr5_2:9892456-9892475 None:intergenic 50.0%
GCTTTGGCAATCACCAATCC+TGG + chr5_2:9892652-9892671 Msa0755940:CDS 50.0%
!! ATCACCAATCCTGGACTGGT+AGG + chr5_2:9892661-9892680 Msa0755940:intron 50.0%
AACACCTACCAGTCCAGGAT+TGG - chr5_2:9892668-9892687 None:intergenic 50.0%
!! ATCCTGGACTGGTAGGTGTT+TGG + chr5_2:9892668-9892687 Msa0755940:intron 50.0%
TTCCAAACACCTACCAGTCC+AGG - chr5_2:9892673-9892692 None:intergenic 50.0%
!! ACCGTCTGCGAATTTGTTGC+TGG + chr5_2:9893139-9893158 Msa0755940:CDS 50.0%
TTGCTGGAATACTCGCGACT+TGG + chr5_2:9893155-9893174 Msa0755940:CDS 50.0%
! ATACTCGCGACTTGGCTTAG+TGG + chr5_2:9893163-9893182 Msa0755940:CDS 50.0%
TCTGCATAGCTGAGTGCAAG+TGG - chr5_2:9893202-9893221 None:intergenic 50.0%
GCCTTCTTCATTGGTCCTAC+AGG + chr5_2:9893905-9893924 Msa0755940:CDS 50.0%
CTTGGAACTTCCCTGCTTTG+TGG + chr5_2:9894167-9894186 Msa0755940:CDS 50.0%
TGCAATGCCACCACAAAGCA+GGG - chr5_2:9894180-9894199 None:intergenic 50.0%
TTGCAATGCCACCACAAAGC+AGG - chr5_2:9894181-9894200 None:intergenic 50.0%
TGTGGTGGCATTGCAAACCT+TGG + chr5_2:9894185-9894204 Msa0755940:CDS 50.0%
TGGCATTGCAAACCTTGGAG+TGG + chr5_2:9894190-9894209 Msa0755940:CDS 50.0%
GAATGTCAGTGAGGTTAGCG+TGG + chr5_2:9894303-9894322 Msa0755940:intron 50.0%
! GCAGCAGGTTTTTGTGCAGT+TGG - chr5_2:9895218-9895237 None:intergenic 50.0%
GCTACAGTCTTAGCATGTGG+TGG - chr5_2:9895248-9895267 None:intergenic 50.0%
GCAGCTACAGTCTTAGCATG+TGG - chr5_2:9895251-9895270 None:intergenic 50.0%
TGTAGCTGCTATTCAGGCAG+AGG + chr5_2:9895262-9895281 Msa0755940:CDS 50.0%
ATGTGAAGTTGGGGGGAGAA+GGG + chr5_2:9895470-9895489 Msa0755940:intron 50.0%
CTCAAGCAGCTGGTTGTTTG+TGG + chr5_2:9895838-9895857 Msa0755940:CDS 50.0%
GCCTGCAAGGTACATCTTCA+TGG + chr5_2:9896334-9896353 Msa0755940:three_prime_UTR 50.0%
GATGTTGTGGAAAGCGGTGA+AGG + chr5_2:9896650-9896669 Msa0755940:three_prime_UTR 50.0%
TGCTAGAGGCTATTGATCCG+AGG + chr5_2:9896852-9896871 Msa0755940:three_prime_UTR 50.0%
TGATGTGTGATCAAGGCCCA+TGG + chr5_2:9897081-9897100 Msa0755940:three_prime_UTR 50.0%
CAACAACCTCTCCGCAATCT+TGG - chr5_2:9897274-9897293 None:intergenic 50.0%
CGTCTTGCTTCAGATGAGGA+TGG + chr5_2:9897299-9897318 Msa0755940:three_prime_UTR 50.0%
TTCAAACCGAGTTTGGAGGG+AGG + chr5_2:9898322-9898341 Msa0755940:three_prime_UTR 50.0%
GAGTTTGGAGGGAGGTTCTA+AGG + chr5_2:9898330-9898349 Msa0755940:three_prime_UTR 50.0%
GCGGCAATCGTATTCATGAC+CGG - chr5_2:9898393-9898412 None:intergenic 50.0%
TGTTACGCTCAGCGGTAATG+AGG - chr5_2:9898415-9898434 None:intergenic 50.0%
GCTGAAAAATCCTTGGGAGG+AGG + chr5_2:9898437-9898456 Msa0755940:three_prime_UTR 50.0%
AAAAATCCTTGGGAGGAGGC+TGG + chr5_2:9898441-9898460 Msa0755940:three_prime_UTR 50.0%
CCGAGAGAGACATGGGAAGA+AGG - chr5_2:9891211-9891230 None:intergenic 55.0%
AGGGACACGTTCAAGGGAAG+AGG - chr5_2:9891356-9891375 None:intergenic 55.0%
GAGAGAGAGGGACACGTTCA+AGG - chr5_2:9891363-9891382 None:intergenic 55.0%
CCGTACCTGTACCTAGGCAT+TGG + chr5_2:9892448-9892467 Msa0755940:CDS 55.0%
ATGTGGTTCTTGCAGGGGAG+CGG + chr5_2:9892630-9892649 Msa0755940:intron 55.0%
GGCAATCACCAATCCTGGAC+TGG + chr5_2:9892657-9892676 Msa0755940:CDS 55.0%
GAGCTCCACCAAGATTTCCC+TGG - chr5_2:9893100-9893119 None:intergenic 55.0%
GGAACTTCCCTGCTTTGTGG+TGG + chr5_2:9894170-9894189 Msa0755940:CDS 55.0%
GTCAGTGAGGTTAGCGTGGA+TGG + chr5_2:9894307-9894326 Msa0755940:intron 55.0%
!! TGCAGTTGGGTTGGCAGAAG+AGG - chr5_2:9895204-9895223 None:intergenic 55.0%
!! TGTGGTGGACGATATGCAGC+AGG - chr5_2:9895233-9895252 None:intergenic 55.0%
GATGTGAAGTTGGGGGGAGA+AGG + chr5_2:9895469-9895488 Msa0755940:intron 55.0%
GCAGCTGGTTGTTTGTGGGA+TGG + chr5_2:9895843-9895862 Msa0755940:CDS 55.0%
TCTGCACTTGTGGCACTTGC+AGG + chr5_2:9898033-9898052 Msa0755940:intron 55.0%
GGCACTTGCAGGAACTGCAT+TGG + chr5_2:9898044-9898063 Msa0755940:intron 55.0%
TACGCTCAGCGGTAATGAGG+CGG - chr5_2:9898412-9898431 None:intergenic 55.0%
ACAGCATGTCGCCCTCTTGT+AGG - chr5_2:9898490-9898509 None:intergenic 55.0%
GAGAGGGCCGAGAGAGACAT+GGG - chr5_2:9891218-9891237 None:intergenic 60.0%
TGAGAGGGCCGAGAGAGACA+TGG - chr5_2:9891219-9891238 None:intergenic 60.0%
TTCTTGCAGGGGAGCGGCTT+TGG + chr5_2:9892636-9892655 Msa0755940:intron 60.0%
! CTCGCGACTTGGCTTAGTGG+AGG + chr5_2:9893166-9893185 Msa0755940:CDS 60.0%
TTGGAACCAGCCTCCTCCCA+AGG - chr5_2:9898450-9898469 None:intergenic 60.0%
TGGACGTACTGCTGCGCCAC+CGG - chr5_2:9895755-9895774 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 9891174 9898634 9891174 ID=Msa0755940;Name=Msa0755940
chr5_2 mRNA 9891174 9898634 9891174 ID=Msa0755940-mRNA-1;Parent=Msa0755940;Name=Msa0755940-mRNA-1;_AED=0.22;_eAED=0.22;_QI=389|0.68|0.64|1|0.56|0.70|17|1505|462
chr5_2 exon 9891174 9891523 9891174 ID=Msa0755940-mRNA-1:exon:4564;Parent=Msa0755940-mRNA-1
chr5_2 exon 9892199 9892288 9892199 ID=Msa0755940-mRNA-1:exon:4565;Parent=Msa0755940-mRNA-1
chr5_2 exon 9892387 9892494 9892387 ID=Msa0755940-mRNA-1:exon:4566;Parent=Msa0755940-mRNA-1
chr5_2 exon 9892645 9892678 9892645 ID=Msa0755940-mRNA-1:exon:4567;Parent=Msa0755940-mRNA-1
chr5_2 exon 9893101 9893257 9893101 ID=Msa0755940-mRNA-1:exon:4568;Parent=Msa0755940-mRNA-1
chr5_2 exon 9893443 9893690 9893443 ID=Msa0755940-mRNA-1:exon:4569;Parent=Msa0755940-mRNA-1
chr5_2 exon 9893802 9893926 9893802 ID=Msa0755940-mRNA-1:exon:4570;Parent=Msa0755940-mRNA-1
chr5_2 exon 9894033 9894068 9894033 ID=Msa0755940-mRNA-1:exon:4571;Parent=Msa0755940-mRNA-1
chr5_2 exon 9894138 9894262 9894138 ID=Msa0755940-mRNA-1:exon:4572;Parent=Msa0755940-mRNA-1
chr5_2 exon 9894840 9894903 9894840 ID=Msa0755940-mRNA-1:exon:4573;Parent=Msa0755940-mRNA-1
chr5_2 exon 9894978 9895002 9894978 ID=Msa0755940-mRNA-1:exon:4574;Parent=Msa0755940-mRNA-1
chr5_2 exon 9895165 9895283 9895165 ID=Msa0755940-mRNA-1:exon:4575;Parent=Msa0755940-mRNA-1
chr5_2 exon 9895724 9896181 9895724 ID=Msa0755940-mRNA-1:exon:4576;Parent=Msa0755940-mRNA-1
chr5_2 exon 9896272 9896391 9896272 ID=Msa0755940-mRNA-1:exon:4577;Parent=Msa0755940-mRNA-1
chr5_2 exon 9896608 9897133 9896608 ID=Msa0755940-mRNA-1:exon:4578;Parent=Msa0755940-mRNA-1
chr5_2 exon 9897259 9897376 9897259 ID=Msa0755940-mRNA-1:exon:4579;Parent=Msa0755940-mRNA-1
chr5_2 exon 9898055 9898634 9898055 ID=Msa0755940-mRNA-1:exon:4580;Parent=Msa0755940-mRNA-1
chr5_2 five_prime_UTR 9891174 9891523 9891174 ID=Msa0755940-mRNA-1:five_prime_utr;Parent=Msa0755940-mRNA-1
chr5_2 five_prime_UTR 9892199 9892237 9892199 ID=Msa0755940-mRNA-1:five_prime_utr;Parent=Msa0755940-mRNA-1
chr5_2 CDS 9892238 9892288 9892238 ID=Msa0755940-mRNA-1:cds;Parent=Msa0755940-mRNA-1
chr5_2 CDS 9892387 9892494 9892387 ID=Msa0755940-mRNA-1:cds;Parent=Msa0755940-mRNA-1
chr5_2 CDS 9892645 9892678 9892645 ID=Msa0755940-mRNA-1:cds;Parent=Msa0755940-mRNA-1
chr5_2 CDS 9893101 9893257 9893101 ID=Msa0755940-mRNA-1:cds;Parent=Msa0755940-mRNA-1
chr5_2 CDS 9893443 9893690 9893443 ID=Msa0755940-mRNA-1:cds;Parent=Msa0755940-mRNA-1
chr5_2 CDS 9893802 9893926 9893802 ID=Msa0755940-mRNA-1:cds;Parent=Msa0755940-mRNA-1
chr5_2 CDS 9894033 9894068 9894033 ID=Msa0755940-mRNA-1:cds;Parent=Msa0755940-mRNA-1
chr5_2 CDS 9894138 9894262 9894138 ID=Msa0755940-mRNA-1:cds;Parent=Msa0755940-mRNA-1
chr5_2 CDS 9894840 9894903 9894840 ID=Msa0755940-mRNA-1:cds;Parent=Msa0755940-mRNA-1
chr5_2 CDS 9894978 9895002 9894978 ID=Msa0755940-mRNA-1:cds;Parent=Msa0755940-mRNA-1
chr5_2 CDS 9895165 9895283 9895165 ID=Msa0755940-mRNA-1:cds;Parent=Msa0755940-mRNA-1
chr5_2 CDS 9895724 9896020 9895724 ID=Msa0755940-mRNA-1:cds;Parent=Msa0755940-mRNA-1
chr5_2 three_prime_UTR 9896021 9896181 9896021 ID=Msa0755940-mRNA-1:three_prime_utr;Parent=Msa0755940-mRNA-1
chr5_2 three_prime_UTR 9896272 9896391 9896272 ID=Msa0755940-mRNA-1:three_prime_utr;Parent=Msa0755940-mRNA-1
chr5_2 three_prime_UTR 9896608 9897133 9896608 ID=Msa0755940-mRNA-1:three_prime_utr;Parent=Msa0755940-mRNA-1
chr5_2 three_prime_UTR 9897259 9897376 9897259 ID=Msa0755940-mRNA-1:three_prime_utr;Parent=Msa0755940-mRNA-1
chr5_2 three_prime_UTR 9898055 9898634 9898055 ID=Msa0755940-mRNA-1:three_prime_utr;Parent=Msa0755940-mRNA-1
Gene Sequence

>Msa0755940

ATGAAAATTGCTGAACTAGAACAAGTTAGCTCAAGACCTGATGTTGTTGTGGTTTGGGATGCTACTGCAGCAGATCCTAAGTTGCTGGTGTTTTTGAAATCTTATCGTAACACCGTACCTGTACCTAGGCATTGGTCACAAAAGAGAAAATTTTTGCAGGGGAGCGGCTTTGGCAATCACCAATCCTGGACTGGGAAATCTTGGTGGAGCTCGAATGGGAATAGTTGCGAAACCGTCTGCGAATTTGTTGCTGGAATACTCGCGACTTGGCTTAGTGGAGGTGTTGTTGTTCCACTTGCACTCAGCTATGCAGAAGTAGAGCTTCTCTATGTGATGAATAATTCGGTTCGTATATATGATGTAAATATGCTTCAAAATGAACCTTACCTAAGGAAGAAAAATGTTGGCGATGTGTCTGCTATATTGAGTACTGAAGATCATGGTGAATTAATGCAAAGCATTGCCAATAAAACCTCTTCTCAGTTTTTCCATATTCTGCTTGTTCCTAATAATTCCTCTGAGAAGAGTAGAAATGGACATTCACAAAATGGGGAAATTGATGCAGACAGAATTTTCCTGAAAAATGTCGAAAGATCAAGTGAAGATCCAGCACTGATTTTGTACACTAACGGGACAACAGTTAAAAACAAACAGATATTAGATTGTATGCTGGTTGTTACTTCAAATTTTGCAGACAAATTGCCTTCTTCATTGGTCCTACAGTTGGAGGGCTTCTTAATGCAACATGTGGGAATATTAGTTCCATCCTTTCAAACCTTCTTCTTGTGCTTGGAACTTCCCTGCTTTGTGGTGGCATTGCAAACCTTGGAGTGGAGCAAAAAAAAGGAAGCCTATTTCATTTTATTATATATTGTCAAATATAAGATCAAGATTTTTCACTATAATGGGTCATTGTACTTCAAGGAGATGTTTGACAAGTTATACCAGGCTGATTGGAAACCAGAGTCACCAAGTCAAGGACCAAAACCAACCCAAGTTTCTACAAAAGCCTCTTCTGCCAACCCAACTGCACAAAAACCTGCTGCATATCGTCCACCACATGCTAAGACTGTAGCTGCTATTCAGGCAGAGGTTGAAACACCTATGATAAACAAGATTGCCGGTGGCGCAGCAGTACGTCCATTTGTAGCTCACCACAATGAACTTGACGTAAAGTTGTTCATGAGAATTGCTCCAGAACTTTATCTCAAGCAGCTGGTTGTTTGTGGGATGGAACATGTTTATGAAATTGGTAAACAATTTAGAAATGAGGATATAGACCTTACACATACTCCTGAGTTCACTACCTGTGATTTTTATATGGCTTATAATGACTACAACGACCTAATGGCGATAACACAGAAAATGTTGAGTGGTGAGAATTATTAA
Protein sequence

>Msa0755940

MKIAELEQVSSRPDVVVVWDATAADPKLLVFLKSYRNTVPVPRHWSQKRKFLQGSGFGNHQSWTGKSWWSSNGNSCETVCEFVAGILATWLSGGVVVPLALSYAEVELLYVMNNSVRIYDVNMLQNEPYLRKKNVGDVSAILSTEDHGELMQSIANKTSSQFFHILLVPNNSSEKSRNGHSQNGEIDADRIFLKNVERSSEDPALILYTNGTTVKNKQILDCMLVVTSNFADKLPSSLVLQLEGFLMQHVGILVPSFQTFFLCLELPCFVVALQTLEWSKKKEAYFILLYIVKYKIKIFHYNGSLYFKEMFDKLYQADWKPESPSQGPKPTQVSTKASSANPTAQKPAAYRPPHAKTVAAIQAEVETPMINKIAGGAAVRPFVAHHNELDVKLFMRIAPELYLKQLVVCGMEHVYEIGKQFRNEDIDLTHTPEFTTCDFYMAYNDYNDLMAITQKMLSGENY*