AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0979200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0979200 MtrunA17_Chr4g0004091 72.340 141 18 1 80 220 126 245 3.77e-59 196
Msa0979200 MtrunA17_Chr4g0072161 88.542 96 11 0 372 467 154 249 3.66e-54 187
Msa0979200 MtrunA17_Chr4g0072141 84.375 96 15 0 372 467 2 97 2.09e-51 176
Msa0979200 MtrunA17_Chr4g0004831 63.830 141 30 1 80 220 121 240 5.02e-50 171
Msa0979200 MtrunA17_Chr4g0072181 77.083 96 22 0 372 467 81 176 5.29e-46 164
Msa0979200 MtrunA17_Chr2g0298001 77.778 99 22 0 372 470 283 381 6.04e-46 168
Msa0979200 MtrunA17_Chr4g0045551 71.277 94 3 1 304 373 389 482 8.55e-33 130
Msa0979200 MtrunA17_Chr2g0282041 96.296 54 2 0 1 54 147 200 8.60e-27 113
Msa0979200 MtrunA17_Chr8g0335841 47.788 113 51 1 362 466 233 345 1.28e-26 113
Msa0979200 MtrunA17_Chr4g0047751 88.889 54 6 0 1 54 158 211 7.32e-25 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0979200 AT3G11710.1 79.167 96 20 0 372 467 301 396 3.72e-47 172
Msa0979200 AT4G21660.3 81.250 64 12 0 1 64 163 226 3.97e-26 112
Msa0979200 AT3G13490.1 52.632 95 45 0 372 466 273 367 7.00e-26 111
Msa0979200 AT4G21660.2 67.532 77 13 1 1 77 163 227 3.45e-25 109
Msa0979200 AT4G21660.1 90.741 54 5 0 1 54 163 216 3.57e-25 108
Msa0979200 AT3G16170.1 44.681 141 50 2 80 220 141 253 4.82e-25 108
Msa0979200 AT1G73180.2 47.959 98 27 2 304 379 386 481 1.76e-17 85.1
Msa0979200 AT1G73180.1 48.913 92 23 2 304 373 386 475 1.30e-16 82.8

Find 197 sgRNAs with CRISPR-Local

Find 433 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATTCATGTTTCAGGTTT+TGG 0.075248 6_4:-15758628 Msa0979200:three_prime_UTR
TAAGTCCTCACTACAAAATT+TGG 0.119205 6_4:+15757256 None:intergenic
ATCTCCAACATTCATGTTTC+AGG 0.170623 6_4:-15758634 Msa0979200:three_prime_UTR
GATGAGGATGGAAGGTTTAA+AGG 0.197412 6_4:-15758125 Msa0979200:three_prime_UTR
AGCAACTGCATTGTCTTTCT+TGG 0.198801 6_4:+15757080 None:intergenic
TTCAATAGGGAGATGTTTAA+TGG 0.206830 6_4:-15757354 Msa0979200:three_prime_UTR
TGAAGAAAGTTCTAAACTTT+TGG 0.209770 6_4:-15756861 Msa0979200:three_prime_UTR
ATGGAACATGTTTATGAAAT+TGG 0.220857 6_4:-15759574 Msa0979200:CDS
GGGTGAGGATTGAAGAATTT+GGG 0.228037 6_4:+15764182 None:intergenic
AGAAATGGACATTCACAAAA+TGG 0.249033 6_4:-15761811 Msa0979200:CDS
TTCTTGCAGGGGAGCGGCTT+TGG 0.257739 6_4:-15762797 Msa0979200:intron
CATGTTGATTCTATGGAGTT+TGG 0.274376 6_4:+15764161 None:intergenic
AATACTTGACAACAACAATT+TGG 0.278361 6_4:+15761326 None:intergenic
TCTATTATTAATGTTGGTTC+TGG 0.280401 6_4:-15758815 Msa0979200:three_prime_UTR
GTAGAAACTTGGGTTGGTTT+TGG 0.284210 6_4:+15760259 None:intergenic
AATATATAATAAAATGAAAT+AGG 0.288228 6_4:+15761203 None:intergenic
AACAAATGCAAATTTAATTT+CGG 0.291040 6_4:+15757297 None:intergenic
GAGGCTGGTTCCAATTTGTT+AGG 0.292256 6_4:-15756980 Msa0979200:three_prime_UTR
TTACAGGAATAATGCTGATT+TGG 0.294830 6_4:-15759170 Msa0979200:intron
TGGGTGAGGATTGAAGAATT+TGG 0.313789 6_4:+15764181 None:intergenic
TTGAGTGGTGAGAATTATTA+AGG 0.316578 6_4:-15759436 Msa0979200:exon
AAACAAGGAAGATTAGAGTT+AGG 0.320485 6_4:-15763960 Msa0979200:five_prime_UTR
TATTAGGAACAGGCAGAATA+TGG 0.324406 6_4:+15761851 None:intergenic
GGTGATTGTCCCTAACAAAT+TGG 0.330595 6_4:+15756970 None:intergenic
GAGTTTGCATGTTGATTCTA+TGG 0.331195 6_4:+15764154 None:intergenic
TACAGTGTTGTTTGTGGAGT+TGG 0.334555 6_4:-15756904 Msa0979200:three_prime_UTR
CTCTTCTCAGAGGAATTATT+AGG 0.335182 6_4:+15761835 None:intergenic
ATGTTAAGAGCTTACGCTTT+GGG 0.338436 6_4:+15758067 None:intergenic
GGCACTGAATATGATTTATC+AGG 0.345491 6_4:-15763998 Msa0979200:five_prime_UTR
GAGTTTGGAGGGAGGTTCTA+AGG 0.346039 6_4:-15757106 Msa0979200:three_prime_UTR
GATGGAAGGTTTAAAGGCTT+TGG 0.349857 6_4:-15758119 Msa0979200:three_prime_UTR
TCCATGAAGATGTACCTTGC+AGG 0.355379 6_4:+15759101 None:intergenic
CTCAAGCAGCTGGTTGTTTG+TGG 0.355654 6_4:-15759598 Msa0979200:CDS
GACATGCTGTTATTCGATTT+AGG 0.356277 6_4:-15756936 Msa0979200:three_prime_UTR
CAACAACCTCTCCGCAATCT+TGG 0.359636 6_4:+15758165 None:intergenic
GAGTGTTGTCTTCATTCAAT+AGG 0.362606 6_4:-15757368 Msa0979200:three_prime_UTR
TAAGACTGTAGCTGCTATTC+AGG 0.365878 6_4:-15760176 Msa0979200:CDS
AACAAGGAAGATTAGAGTTA+GGG 0.366624 6_4:-15763959 Msa0979200:five_prime_UTR
AAAATCAAATATCATGCAAA+TGG 0.367440 6_4:-15759322 Msa0979200:three_prime_UTR
TCAAACCTTCTTCTTGTGCT+TGG 0.370945 6_4:-15761283 Msa0979200:CDS
GCCTTCTTCATTGGTCCTAC+AGG 0.371948 6_4:-15761527 Msa0979200:intron
GAAATGGACATTCACAAAAT+GGG 0.380131 6_4:-15761810 Msa0979200:CDS
CTTGGAACTTCCCTGCTTTG+TGG 0.383269 6_4:-15761265 Msa0979200:CDS
AAGTCCTCACTACAAAATTT+GGG 0.385657 6_4:+15757257 None:intergenic
AGAATTGTTAGAAATGATTC+AGG 0.387877 6_4:-15758324 Msa0979200:intron
TCCTCTGAGAAGAGTAGAAA+TGG 0.388853 6_4:-15761826 Msa0979200:CDS
ACAGCATGTCGCCCTCTTGT+AGG 0.389300 6_4:+15756949 None:intergenic
ATGTTGATTCTATGGAGTTT+GGG 0.389627 6_4:+15764162 None:intergenic
CATTCATAATATTATTCATA+AGG 0.396552 6_4:+15757228 None:intergenic
TGCAGCAGATCCTAAGTTGC+TGG 0.399151 6_4:-15763032 Msa0979200:CDS
GCCTGCAAGGTACATCTTCA+TGG 0.400385 6_4:-15759102 Msa0979200:three_prime_UTR
CCGGCAATCTTGTTTATCAT+AGG 0.401245 6_4:+15759703 None:intergenic
CCGAGAGAGACATGGGAAGA+AGG 0.401978 6_4:+15764223 None:intergenic
AGACAAATTGCCTTCTTCAT+TGG 0.402869 6_4:-15761536 Msa0979200:CDS
CAGTTGCTTGATGTGCTTAC+CGG 0.404409 6_4:-15757065 Msa0979200:three_prime_UTR
CGAGAGAGACATGGGAAGAA+GGG 0.406672 6_4:+15764224 None:intergenic
TCTCTATGTGATGAATAATT+CGG 0.408368 6_4:-15762201 Msa0979200:CDS
TCCTCCTACAGTGTTGTTTG+TGG 0.411414 6_4:-15756910 Msa0979200:three_prime_UTR
TCAGAGGAATTATTAGGAAC+AGG 0.412601 6_4:+15761841 None:intergenic
AAATCAAATATCATGCAAAT+GGG 0.412981 6_4:-15759321 Msa0979200:three_prime_UTR
GATGAATATGACCTACATTC+AGG 0.413598 6_4:-15758493 Msa0979200:three_prime_UTR
TAGACTTCACTCCACCCTTC+AGG 0.413847 6_4:-15759276 Msa0979200:intron
ACCGTCTGCGAATTTGTTGC+TGG 0.417231 6_4:-15762293 Msa0979200:CDS
GGAAGATTAGAGTTAGGGTT+TGG 0.421891 6_4:-15763954 Msa0979200:five_prime_UTR
TGTGGTGGCATTGCAATCCT+TGG 0.429444 6_4:-15761247 Msa0979200:CDS
CATTGCACATGTTCTGAGTA+TGG 0.431001 6_4:-15758386 Msa0979200:three_prime_UTR
ATTGAAATCCAGGGAAATCT+TGG 0.431539 6_4:-15762343 Msa0979200:intron
TGGACGTGCTGCTGCGCCAC+CGG 0.434564 6_4:+15759684 None:intergenic
CCTAACTTACTTGGTGACTC+TGG 0.436811 6_4:+15760442 None:intergenic
TAAACTATTTGCAGGCTGAT+TGG 0.439685 6_4:-15760468 Msa0979200:intron
TGCAGTTGGGTTGGCAGAAG+AGG 0.444560 6_4:+15760231 None:intergenic
CTTAATAAGATAAAATCATA+TGG 0.444688 6_4:+15759376 None:intergenic
GGAGTGAAGTCTATTTCAAT+AGG 0.446836 6_4:+15759286 None:intergenic
ATAAACTCTATTATTAATGT+TGG 0.455272 6_4:-15758821 Msa0979200:three_prime_UTR
TAATGACTACAACGACCTAA+TGG 0.455750 6_4:-15759476 Msa0979200:CDS
TAGGTCATATTCATCAGAAA+AGG 0.460102 6_4:+15758501 None:intergenic
TTCAAGCAATATCATTTCTA+CGG 0.466633 6_4:+15756880 None:intergenic
TAATGGGTCATTGTACTTCA+AGG 0.471047 6_4:-15760574 Msa0979200:CDS
GCTTTGGCAATCACCAATCC+TGG 0.472204 6_4:-15762781 Msa0979200:CDS
CCGAACTTGTGCATTCACTT+AGG 0.473843 6_4:+15758759 None:intergenic
TCAAGCAGCTGGTTGTTTGT+GGG 0.474857 6_4:-15759597 Msa0979200:CDS
AGTGTTGTCTTCATTCAATA+GGG 0.477044 6_4:-15757367 Msa0979200:three_prime_UTR
TGGTAAACAATTTAGAAATG+AGG 0.479474 6_4:-15759554 Msa0979200:CDS
CCTATGATAAACAAGATTGC+CGG 0.480935 6_4:-15759703 Msa0979200:CDS
TGCTCAGCTGCAATAATTGA+TGG 0.481250 6_4:-15763930 Msa0979200:five_prime_UTR
AGGCTGGTTCCAATTTGTTA+GGG 0.481872 6_4:-15756979 Msa0979200:three_prime_UTR
ATACTCGCGACTTGGCTTAG+TGG 0.485895 6_4:-15762269 Msa0979200:CDS
TTCTGGTGTGAGGAAAAGAA+TGG 0.487616 6_4:+15764259 None:intergenic
AAGTTCCAAGCACAAGAAGA+AGG 0.489149 6_4:+15761278 None:intergenic
GAGAGAGAGGGACACGTTCA+AGG 0.489746 6_4:+15764071 None:intergenic
GAAAATTTCTTCCAAGATTG+CGG 0.490605 6_4:-15758176 Msa0979200:three_prime_UTR
AATCTTGGTGGAGCTCGAAT+AGG 0.490823 6_4:-15762328 Msa0979200:CDS
AAGAAGAAGGTTTGAAAGGA+TGG 0.493952 6_4:+15761291 None:intergenic
TTGCAATGCCACCACAAAGC+AGG 0.496918 6_4:+15761254 None:intergenic
TTGCTGGAATACTCGCGACT+TGG 0.497164 6_4:-15762277 Msa0979200:CDS
CCTAAGTGAATGCACAAGTT+CGG 0.499139 6_4:-15758759 Msa0979200:three_prime_UTR
TTCCAAACACCTACCAGTCC+AGG 0.501998 6_4:+15762763 None:intergenic
CCTTCTTCCCATGTCTCTCT+CGG 0.503575 6_4:-15764223 Msa0979200:five_prime_UTR
TGAGCATTGGAGAAACGAAA+TGG 0.505403 6_4:-15757207 Msa0979200:three_prime_UTR
ACTCCTACCACAACAACATC+AGG 0.506236 6_4:+15763159 None:intergenic
ATGTGGTTCTTGCAGGGGAG+CGG 0.508751 6_4:-15762803 Msa0979200:intron
AGGGACACGTTCAAGGGAAG+AGG 0.509430 6_4:+15764078 None:intergenic
GATTCTATGGAGTTTGGGTG+AGG 0.512401 6_4:+15764167 None:intergenic
TATATCAACCTCTAGCTGAC+AGG 0.513541 6_4:-15758673 Msa0979200:three_prime_UTR
AGCTGCTTGAGATAAAGTTC+TGG 0.514028 6_4:+15759610 None:intergenic
TCATTGTGGTGAGCTACAAA+TGG 0.517376 6_4:+15759664 None:intergenic
GTTCAAGGGAAGAGGATAAG+AGG 0.531277 6_4:+15764086 None:intergenic
GGAACTTCCCTGCTTTGTGG+TGG 0.531729 6_4:-15761262 Msa0979200:CDS
TGAACTCAGGAGTATGTGTA+AGG 0.534167 6_4:+15759524 None:intergenic
AGAACTTTATCTCAAGCAGC+TGG 0.534987 6_4:-15759608 Msa0979200:CDS
ATGTGATGAATAATTCGGTT+CGG 0.538369 6_4:-15762196 Msa0979200:intron
AACACCTACCAGTCCAGGAT+TGG 0.539428 6_4:+15762768 None:intergenic
AAAACCTGAAACATGAATGT+TGG 0.543763 6_4:+15758630 None:intergenic
TGTGACCAATGCCTAGGTAC+AGG 0.544976 6_4:+15762980 None:intergenic
GTTCTGGCTTTAAGATGTTG+TGG 0.544981 6_4:-15758799 Msa0979200:three_prime_UTR
ATAATGCTGATTTGGTTATG+TGG 0.545874 6_4:-15759162 Msa0979200:three_prime_UTR
GATTGCTTGATGTGTGATCA+AGG 0.545966 6_4:-15758362 Msa0979200:three_prime_UTR
TTCAAAATGAACCTTACCTA+AGG 0.546225 6_4:-15761969 Msa0979200:CDS
TGTTACGCTCAGCGGTAATG+AGG 0.546564 6_4:+15757024 None:intergenic
AGAGAGAGGGACACGTTCAA+GGG 0.553027 6_4:+15764072 None:intergenic
TCAAACAAGAACCTCTTGCA+TGG 0.554165 6_4:-15764020 Msa0979200:five_prime_UTR
GGCAATCACCAATCCTGGAC+TGG 0.554841 6_4:-15762776 Msa0979200:intron
TGAGAGGGCCGAGAGAGACA+TGG 0.554946 6_4:+15764215 None:intergenic
TTAGTGTACAAAATCAGTGC+TGG 0.555279 6_4:+15761622 None:intergenic
ACCTGTAGGACCAATGAAGA+AGG 0.555735 6_4:+15761526 None:intergenic
TTAGAACCTCCCTCCAAACT+CGG 0.557286 6_4:+15757108 None:intergenic
GAGAGGGCCGAGAGAGACAT+GGG 0.558774 6_4:+15764216 None:intergenic
TCTGCATAGCTGAGTGCAAG+TGG 0.559278 6_4:+15762233 None:intergenic
ACAGATATTAGATTGTATGC+TGG 0.559718 6_4:-15761578 Msa0979200:CDS
TGCAATGCCACCACAAAGCA+GGG 0.561410 6_4:+15761255 None:intergenic
GATGTTGTGGAAAGCGGTGA+AGG 0.561562 6_4:-15758786 Msa0979200:three_prime_UTR
TCCACAAACAACACTGTAGG+AGG 0.562703 6_4:+15756909 None:intergenic
TCTCTATTATTACAGTTGGA+GGG 0.566642 6_4:-15761414 Msa0979200:intron
GCACAAGAAGAAGGTTTGAA+AGG 0.568007 6_4:+15761287 None:intergenic
GAAATCCAGGGAAATCTTGG+TGG 0.568219 6_4:-15762340 Msa0979200:intron
AAATCACAGGTAGTGAACTC+AGG 0.569165 6_4:+15759511 None:intergenic
TTGCTTCAGATGAGGATGGA+AGG 0.572189 6_4:-15758133 Msa0979200:three_prime_UTR
TCTATTCACGAACTCACAAA+GGG 0.572459 6_4:-15759352 Msa0979200:three_prime_UTR
CTCAAGACCTGATGTTGTTG+TGG 0.574621 6_4:-15763166 Msa0979200:intron
TTTGGGGCTAAGAGAGTGAG+AGG 0.574621 6_4:+15764199 None:intergenic
TGTGGTGGACGATATGCAGC+AGG 0.576118 6_4:+15760202 None:intergenic
ATAATATTATGAATGAGCAT+TGG 0.576428 6_4:-15757220 Msa0979200:three_prime_UTR
TCCAGCAACAAATTCGCAGA+CGG 0.581642 6_4:+15762292 None:intergenic
GGCACTTGCAGGAACTGCAT+TGG 0.583491 6_4:-15757392 Msa0979200:intron
CGTCTTGCTTCAGATGAGGA+TGG 0.585403 6_4:-15758137 Msa0979200:three_prime_UTR
GGTGAGGATTGAAGAATTTG+GGG 0.586947 6_4:+15764183 None:intergenic
TTGTGATTATTCCATCATGA+GGG 0.591225 6_4:+15764122 None:intergenic
ATATTCAGTGCCCATGCAAG+AGG 0.591294 6_4:+15764009 None:intergenic
CTGAATATGATTTATCAGGA+TGG 0.591889 6_4:-15763994 Msa0979200:five_prime_UTR
GTCTATTCACGAACTCACAA+AGG 0.592091 6_4:-15759353 Msa0979200:three_prime_UTR
TTCAGCTTTGTTACGCTCAG+CGG 0.592093 6_4:+15757016 None:intergenic
GCAGCTGGTTGTTTGTGGGA+TGG 0.593960 6_4:-15759593 Msa0979200:CDS
GGGCTTCTTAATGCAACATG+TGG 0.594840 6_4:-15761394 Msa0979200:CDS
TTTGTGATTATTCCATCATG+AGG 0.596174 6_4:+15764121 None:intergenic
CAAGGTGAAAATTGAGAGAG+AGG 0.597039 6_4:+15764058 None:intergenic
TTGGAACCAGCCTCCTCCCA+AGG 0.597641 6_4:+15756989 None:intergenic
GAGAGAGACATGGGAAGAAG+GGG 0.598055 6_4:+15764225 None:intergenic
CTAATTTCTCAAAGCCTGCA+AGG 0.598822 6_4:-15759115 Msa0979200:three_prime_UTR
TGTAGCTGCTATTCAGGCAG+AGG 0.598925 6_4:-15760170 Msa0979200:intron
TCACAAATAGACCTGAATGT+AGG 0.603433 6_4:+15758482 None:intergenic
GCTCAGCTGCAATAATTGAT+GGG 0.603788 6_4:-15763929 Msa0979200:intron
AAATGGACATTCACAAAATG+GGG 0.610443 6_4:-15761809 Msa0979200:CDS
GCGGCAATCGTATTCATGAC+CGG 0.611851 6_4:+15757046 None:intergenic
CAAACAAGAACCTCTTGCAT+GGG 0.612348 6_4:-15764019 Msa0979200:five_prime_UTR
TGGCATTGCAATCCTTGGAG+TGG 0.614323 6_4:-15761242 Msa0979200:CDS
TCCATTTCTACTCTTCTCAG+AGG 0.617031 6_4:+15761825 None:intergenic
CCGTACCTGTACCTAGGCAT+TGG 0.618440 6_4:-15762985 Msa0979200:CDS
TTATCTCAATGTGTTGCTAG+AGG 0.618737 6_4:-15758598 Msa0979200:three_prime_UTR
AATCAAATATCATGCAAATG+GGG 0.623882 6_4:-15759320 Msa0979200:three_prime_UTR
GGCTTCTTAATGCAACATGT+GGG 0.624011 6_4:-15761393 Msa0979200:CDS
ACTTTACGTCAAGTTCATTG+TGG 0.629848 6_4:+15759650 None:intergenic
AACACAAACCTGTCAGCTAG+AGG 0.631156 6_4:+15758665 None:intergenic
TACGCTCAGCGGTAATGAGG+CGG 0.632249 6_4:+15757027 None:intergenic
GATGTTTGACAAGTTATACC+AGG 0.635363 6_4:-15760550 Msa0979200:intron
TGATGTGTGATCAAGGCCCA+TGG 0.637261 6_4:-15758355 Msa0979200:three_prime_UTR
TTCAAACCGAGTTTGGAGGG+AGG 0.637516 6_4:-15757114 Msa0979200:three_prime_UTR
CTTTAAGATGTTGTGGAAAG+CGG 0.640083 6_4:-15758792 Msa0979200:three_prime_UTR
GCTACAGTCTTAGCATGTGG+TGG 0.640695 6_4:+15760187 None:intergenic
TGCTAGAGGCTATTGATCTG+AGG 0.643447 6_4:-15758584 Msa0979200:three_prime_UTR
TGATAGCAATTATTATCCTG+AGG 0.652576 6_4:-15759066 Msa0979200:intron
AACTCCACAAACAACACTGT+AGG 0.655204 6_4:+15756906 None:intergenic
CTCGCGACTTGGCTTAGTGG+AGG 0.656754 6_4:-15762266 Msa0979200:CDS
TTGAATGCACTGCACCTGAA+GGG 0.657190 6_4:+15759262 None:intergenic
CCAATGCCTAGGTACAGGTA+CGG 0.657807 6_4:+15762985 None:intergenic
TAGGGACAATCACCTACAAG+AGG 0.660602 6_4:-15756961 Msa0979200:three_prime_UTR
GTAACACCGTACCTGTACCT+AGG 0.660864 6_4:-15762991 Msa0979200:CDS
AAGGTGAAAATTGAGAGAGA+GGG 0.672652 6_4:+15764059 None:intergenic
GCAGCTACAGTCTTAGCATG+TGG 0.674519 6_4:+15760184 None:intergenic
AATGCACTGCACCTGAAGGG+TGG 0.675869 6_4:+15759265 None:intergenic
ATGATAAACAAGATTGCCGG+TGG 0.677791 6_4:-15759700 Msa0979200:CDS
ATATTGAGTACTGAAGATCA+TGG 0.680453 6_4:-15761919 Msa0979200:CDS
TGTACGTCTTGCTTCAGATG+AGG 0.681852 6_4:-15758141 Msa0979200:three_prime_UTR
TGTTGAGTTTGCAACTGCAG+TGG 0.689687 6_4:-15758093 Msa0979200:three_prime_UTR
AGGGACAATCACCTACAAGA+GGG 0.691250 6_4:-15756960 Msa0979200:three_prime_UTR
TTTCTTCCAAGATTGCGGAG+AGG 0.695206 6_4:-15758171 Msa0979200:three_prime_UTR
ATAACACAGAAAATGTTGAG+TGG 0.702673 6_4:-15759451 Msa0979200:CDS
TTGGGGCTAAGAGAGTGAGA+GGG 0.745435 6_4:+15764200 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTAATTATGTATTTT+TGG - chr6_4:15757315-15757334 Msa0979200:three_prime_UTR 10.0%
!! ATTTGAAAATTTCATATAAA+AGG + chr6_4:15759033-15759052 None:intergenic 10.0%
!!! TTATAAAATCTATTGTATTT+TGG - chr6_4:15761864-15761883 Msa0979200:CDS 10.0%
!! AAACATACTTACAAAAAAAA+AGG + chr6_4:15757419-15757438 None:intergenic 15.0%
!!! TTTTTTTGTAAGTATGTTTT+TGG - chr6_4:15757420-15757439 Msa0979200:intron 15.0%
!!! ATTATCTTTGTTATATTGAT+TGG - chr6_4:15758369-15758388 Msa0979200:three_prime_UTR 15.0%
!!! TTATCTTTGTTATATTGATT+GGG - chr6_4:15758370-15758389 Msa0979200:three_prime_UTR 15.0%
!!! TCATTGATTAATGTTTAATT+TGG - chr6_4:15759597-15759616 Msa0979200:CDS 15.0%
!! TATAAAATATGGTCAAATAA+TGG - chr6_4:15760020-15760039 Msa0979200:intron 15.0%
!! AATAAAATCATTTCTTACAT+AGG - chr6_4:15761236-15761255 Msa0979200:CDS 15.0%
!! CTTAATAAGATAAAATCATA+TGG + chr6_4:15761708-15761727 None:intergenic 15.0%
!!! CATATGATTTTATCTTATTA+AGG - chr6_4:15761706-15761725 Msa0979200:intron 15.0%
!!! ATTTGTATTTTTATTGTTAC+AGG - chr6_4:15761895-15761914 Msa0979200:CDS 15.0%
!!! AATTTTAATCAACTTCAATA+GGG + chr6_4:15762216-15762235 None:intergenic 15.0%
!! ATAAACTCTATTATTAATGT+TGG - chr6_4:15762260-15762279 Msa0979200:CDS 15.0%
!!! AAAAATAATAAAGCATCAAA+TGG + chr6_4:15763424-15763443 None:intergenic 15.0%
!!! AACAAATGCAAATTTAATTT+CGG + chr6_4:15763787-15763806 None:intergenic 15.0%
!! CATTCATAATATTATTCATA+AGG + chr6_4:15763856-15763875 None:intergenic 15.0%
!! CTCATTCTTATTCTTAATTT+GGG + chr6_4:15757386-15757405 None:intergenic 20.0%
!! ACTCATTCTTATTCTTAATT+TGG + chr6_4:15757387-15757406 None:intergenic 20.0%
!! TAACTCAAACAAATAATCAA+AGG + chr6_4:15757709-15757728 None:intergenic 20.0%
!!! AGAATTAGTTTCAAATTGTT+GGG - chr6_4:15757957-15757976 Msa0979200:intron 20.0%
!! ATCTTATATATGTATGTATG+TGG - chr6_4:15758261-15758280 Msa0979200:intron 20.0%
!!! TTTGTTTGGTGTTTTTTTTT+TGG - chr6_4:15758447-15758466 Msa0979200:three_prime_UTR 20.0%
!! ATCAATCTGCTAAAAATTTA+AGG - chr6_4:15758611-15758630 Msa0979200:three_prime_UTR 20.0%
!! TTGAATACTTAGTATATTGT+TGG - chr6_4:15758638-15758657 Msa0979200:three_prime_UTR 20.0%
!! TGAATACTTAGTATATTGTT+GGG - chr6_4:15758639-15758658 Msa0979200:three_prime_UTR 20.0%
!! TCGTTTAGTCAAATTATTTA+TGG - chr6_4:15758714-15758733 Msa0979200:three_prime_UTR 20.0%
!!! ATATGAAATTTTCAAATAGC+TGG - chr6_4:15759036-15759055 Msa0979200:intron 20.0%
!!! ATCATATATACTTTTCACAA+AGG + chr6_4:15759082-15759101 None:intergenic 20.0%
!!! ACATTTTCAGCTTTTAAAAA+TGG - chr6_4:15759351-15759370 Msa0979200:three_prime_UTR 20.0%
!! ATGCTATTCAGTATAAAATA+TGG - chr6_4:15760009-15760028 Msa0979200:intron 20.0%
!! ATAATGGCTATAACTTAAAT+AGG - chr6_4:15760036-15760055 Msa0979200:intron 20.0%
!! TAATGGCTATAACTTAAATA+GGG - chr6_4:15760037-15760056 Msa0979200:intron 20.0%
!! AGAAATGAGCAAATAAAAAA+AGG + chr6_4:15760357-15760376 None:intergenic 20.0%
!!! ATCAAGATTTTTCACTATAA+TGG - chr6_4:15760490-15760509 Msa0979200:intron 20.0%
!!! TCAAGATTTTTCACTATAAT+GGG - chr6_4:15760491-15760510 Msa0979200:intron 20.0%
!! AAGAAATAGTAGAATAAACA+TGG + chr6_4:15760736-15760755 None:intergenic 20.0%
!! AAAATCAAATATCATGCAAA+TGG - chr6_4:15761759-15761778 Msa0979200:intron 20.0%
!! AAATCAAATATCATGCAAAT+GGG - chr6_4:15761760-15761779 Msa0979200:intron 20.0%
!!! GAATTTTAATCAACTTCAAT+AGG + chr6_4:15762217-15762236 None:intergenic 20.0%
!! TGAAAAAATTCAGTTAGATA+AGG + chr6_4:15762883-15762902 None:intergenic 20.0%
!!! TTAACATTTTTTCAACTTTG+TGG - chr6_4:15763030-15763049 Msa0979200:CDS 20.0%
!!! AGGTTATATGATCTTTTAAT+AGG - chr6_4:15763364-15763383 Msa0979200:intron 20.0%
!!! GGTTATATGATCTTTTAATA+GGG - chr6_4:15763365-15763384 Msa0979200:intron 20.0%
!!! GTTATATGATCTTTTAATAG+GGG - chr6_4:15763366-15763385 Msa0979200:intron 20.0%
!! ATAATATTATGAATGAGCAT+TGG - chr6_4:15763861-15763880 Msa0979200:intron 20.0%
!!! AAATTTTTTTTTCTGGTGTG+AGG + chr6_4:15756835-15756854 None:intergenic 25.0%
!!! AAGGGGAAAATTTTTTTTTC+TGG + chr6_4:15756842-15756861 None:intergenic 25.0%
! TGAATAAAAATGAAAACCCA+AGG + chr6_4:15757044-15757063 None:intergenic 25.0%
!!! AAGTTGTTTAAGTTGTTGTA+AGG - chr6_4:15757266-15757285 Msa0979200:three_prime_UTR 25.0%
! CAATTATACAAACATCTTGT+GGG + chr6_4:15757524-15757543 None:intergenic 25.0%
! TTGTATAATTGCCTGAATTA+AGG - chr6_4:15757533-15757552 Msa0979200:intron 25.0%
!! TTAACTAATCTTTTGAGCTT+TGG - chr6_4:15757635-15757654 Msa0979200:intron 25.0%
! AATAGTTATTTACGATCACA+AGG + chr6_4:15757735-15757754 None:intergenic 25.0%
! CAATGAAATCAGGAAAATAA+TGG + chr6_4:15757811-15757830 None:intergenic 25.0%
! AAAAAAGATGCAATGAAATC+AGG + chr6_4:15757821-15757840 None:intergenic 25.0%
!! CAGAATTAGTTTCAAATTGT+TGG - chr6_4:15757956-15757975 Msa0979200:intron 25.0%
! ATGAAACATCATTTGCATAA+CGG + chr6_4:15758001-15758020 None:intergenic 25.0%
!! TGTTTCATAATTTCGTTTTC+AGG - chr6_4:15758013-15758032 Msa0979200:intron 25.0%
!!! ATAATTTCGTTTTCAGGTTT+GGG - chr6_4:15758019-15758038 Msa0979200:intron 25.0%
!! ACAAAAGAGAAAATTTTTGC+AGG - chr6_4:15758121-15758140 Msa0979200:three_prime_UTR 25.0%
! CCTATAATAACTATCAAGTT+AGG + chr6_4:15758158-15758177 None:intergenic 25.0%
!! CCTAACTTGATAGTTATTAT+AGG - chr6_4:15758155-15758174 Msa0979200:three_prime_UTR 25.0%
! AATAAAAGAGAAACAACTCA+AGG + chr6_4:15758352-15758371 None:intergenic 25.0%
!!! TAATGCACAAGATATTTTTG+TGG - chr6_4:15758482-15758501 Msa0979200:three_prime_UTR 25.0%
!! TAGCAATTTTTCTCTGAATT+TGG - chr6_4:15758519-15758538 Msa0979200:three_prime_UTR 25.0%
! TCTCTATGTGATGAATAATT+CGG - chr6_4:15758880-15758899 Msa0979200:intron 25.0%
! ACGTTAAACAGATAAAAGAA+AGG + chr6_4:15758949-15758968 None:intergenic 25.0%
!! ATTTTCCATTGACATTATCT+TGG - chr6_4:15759005-15759024 Msa0979200:intron 25.0%
!!! CATTTGTTTTTCATATCCTT+TGG - chr6_4:15759423-15759442 Msa0979200:exon 25.0%
!! TTTTTCATATCCTTTGGATT+AGG - chr6_4:15759429-15759448 Msa0979200:exon 25.0%
!! GAACAATTTTATATACCTGT+AGG + chr6_4:15759572-15759591 None:intergenic 25.0%
! GTATTCTCTATTATTACAGT+TGG - chr6_4:15759663-15759682 Msa0979200:CDS 25.0%
! AATACTTGACAACAACAATT+TGG + chr6_4:15759758-15759777 None:intergenic 25.0%
! AAATAATTCAAGAACCAAAC+AGG + chr6_4:15760125-15760144 None:intergenic 25.0%
! TAAACCAAATATAGTAGTGA+TGG + chr6_4:15760186-15760205 None:intergenic 25.0%
!! TAAAAAAAGGAATGTTTTCG+TGG + chr6_4:15760344-15760363 None:intergenic 25.0%
! ATGAATCAGAAAACATGTTA+TGG - chr6_4:15760385-15760404 Msa0979200:intron 25.0%
! TGAATCAGAAAACATGTTAT+GGG - chr6_4:15760386-15760405 Msa0979200:intron 25.0%
! AATGAAAAATGCTTTCTTAG+TGG + chr6_4:15760444-15760463 None:intergenic 25.0%
!! TTTTGTTCTTTTTCCATTGA+AGG - chr6_4:15760467-15760486 Msa0979200:intron 25.0%
! AGAAACAATTAACAGATCAT+TGG + chr6_4:15760952-15760971 None:intergenic 25.0%
!!! GATTTTATTTCTCGATTATG+TGG + chr6_4:15761225-15761244 None:intergenic 25.0%
! AACAAACCTCCATAAAATTA+AGG + chr6_4:15761273-15761292 None:intergenic 25.0%
! ATGGAACATGTTTATGAAAT+TGG - chr6_4:15761507-15761526 Msa0979200:intron 25.0%
! TGGTAAACAATTTAGAAATG+AGG - chr6_4:15761527-15761546 Msa0979200:intron 25.0%
! ATAAGCCATATAAAAATCAC+AGG + chr6_4:15761586-15761605 None:intergenic 25.0%
! AATCAAATATCATGCAAATG+GGG - chr6_4:15761761-15761780 Msa0979200:intron 25.0%
!!! GTGGTTTTATTATTCTTCTA+TGG - chr6_4:15761938-15761957 Msa0979200:CDS 25.0%
!!! TCTATTATTAATGTTGGTTC+TGG - chr6_4:15762266-15762285 Msa0979200:CDS 25.0%
!! ACAATTCTGAATTTTTCCAT+GGG + chr6_4:15762745-15762764 None:intergenic 25.0%
!! AACAATTCTGAATTTTTCCA+TGG + chr6_4:15762746-15762765 None:intergenic 25.0%
! AGAATTGTTAGAAATGATTC+AGG - chr6_4:15762757-15762776 Msa0979200:intron 25.0%
! AAGTAGAAAATTAGAGAGTA+AGG - chr6_4:15762853-15762872 Msa0979200:intron 25.0%
! AGTAGAAAATTAGAGAGTAA+GGG - chr6_4:15762854-15762873 Msa0979200:intron 25.0%
!! GGGAAGTATAAATCAATATT+AGG - chr6_4:15763344-15763363 Msa0979200:intron 25.0%
!! AACAAAAAGCATAAAATTCC+TGG + chr6_4:15763578-15763597 None:intergenic 25.0%
!!! TTTGGTATTTTGATAAGATC+TGG - chr6_4:15763618-15763637 Msa0979200:intron 25.0%
!! AAGTTGAAGAACAAAGTTTT+TGG + chr6_4:15763654-15763673 None:intergenic 25.0%
! TTCAAGCAATATCATTTCTA+CGG + chr6_4:15764204-15764223 None:intergenic 25.0%
!!! TGAAGAAAGTTCTAAACTTT+TGG - chr6_4:15764220-15764239 Msa0979200:five_prime_UTR 25.0%
!! ATGTTGATTCTATGGAGTTT+GGG + chr6_4:15756922-15756941 None:intergenic 30.0%
TTGTGATTATTCCATCATGA+GGG + chr6_4:15756962-15756981 None:intergenic 30.0%
TTTGTGATTATTCCATCATG+AGG + chr6_4:15756963-15756982 None:intergenic 30.0%
CTGAATATGATTTATCAGGA+TGG - chr6_4:15757087-15757106 Msa0979200:three_prime_UTR 30.0%
AAACAAGGAAGATTAGAGTT+AGG - chr6_4:15757121-15757140 Msa0979200:three_prime_UTR 30.0%
AACAAGGAAGATTAGAGTTA+GGG - chr6_4:15757122-15757141 Msa0979200:three_prime_UTR 30.0%
GCAATTATACAAACATCTTG+TGG + chr6_4:15757525-15757544 None:intergenic 30.0%
TAACACACTCACAATATGAA+AGG + chr6_4:15757597-15757616 None:intergenic 30.0%
ATTCACATATTCCTTAAGAG+AGG + chr6_4:15757670-15757689 None:intergenic 30.0%
!! CATATTCTGAAGTTTACATC+AGG - chr6_4:15757776-15757795 Msa0979200:intron 30.0%
!!! TCATTGCATCTTTTTTTTGC+AGG - chr6_4:15757825-15757844 Msa0979200:intron 30.0%
!!! CATAATTTCGTTTTCAGGTT+TGG - chr6_4:15758018-15758037 Msa0979200:intron 30.0%
TGAAAACGATGAAGTCAATA+AGG - chr6_4:15758235-15758254 Msa0979200:intron 30.0%
ATTGAGGAGAATAAAAGTTG+AGG - chr6_4:15758575-15758594 Msa0979200:three_prime_UTR 30.0%
! TATTTATGGCATTGAAATCC+AGG - chr6_4:15758728-15758747 Msa0979200:three_prime_UTR 30.0%
! ATTTATGGCATTGAAATCCA+GGG - chr6_4:15758729-15758748 Msa0979200:three_prime_UTR 30.0%
ATGTGATGAATAATTCGGTT+CGG - chr6_4:15758885-15758904 Msa0979200:intron 30.0%
CTTGTGAACATTAAGAATTC+AGG - chr6_4:15758973-15758992 Msa0979200:intron 30.0%
TTCAAAATGAACCTTACCTA+AGG - chr6_4:15759112-15759131 Msa0979200:three_prime_UTR 30.0%
! ACATTTTTCTTCCTTAGGTA+AGG + chr6_4:15759126-15759145 None:intergenic 30.0%
TACCTAAGGAAGAAAAATGT+TGG - chr6_4:15759126-15759145 Msa0979200:three_prime_UTR 30.0%
!! ATATTGAGTACTGAAGATCA+TGG - chr6_4:15759162-15759181 Msa0979200:three_prime_UTR 30.0%
!! AAACTGAGAAGAGGTTTTAT+TGG + chr6_4:15759208-15759227 None:intergenic 30.0%
AATATGGAAAAACTGAGAAG+AGG + chr6_4:15759217-15759236 None:intergenic 30.0%
AGAAATGGACATTCACAAAA+TGG - chr6_4:15759270-15759289 Msa0979200:intron 30.0%
GAAATGGACATTCACAAAAT+GGG - chr6_4:15759271-15759290 Msa0979200:intron 30.0%
AAATGGACATTCACAAAATG+GGG - chr6_4:15759272-15759291 Msa0979200:intron 30.0%
! TTGATCTTTCGACATTTTTC+AGG + chr6_4:15759320-15759339 None:intergenic 30.0%
ACAGATATTAGATTGTATGC+TGG - chr6_4:15759503-15759522 Msa0979200:CDS 30.0%
TTCTCTATTATTACAGTTGG+AGG - chr6_4:15759666-15759685 Msa0979200:CDS 30.0%
TCTCTATTATTACAGTTGGA+GGG - chr6_4:15759667-15759686 Msa0979200:CDS 30.0%
! GTTGTCAAGTATTCTCTTTT+AGG - chr6_4:15759765-15759784 Msa0979200:intron 30.0%
! TTTCAAGTCTGGTAATAGTA+TGG - chr6_4:15760075-15760094 Msa0979200:intron 30.0%
!!! GCTAGATTAGTTTTTCATGT+TGG - chr6_4:15760097-15760116 Msa0979200:intron 30.0%
CTTTCCATCACTACTATATT+TGG - chr6_4:15760179-15760198 Msa0979200:CDS 30.0%
GAATGCATTTGTAGTTTCTT+CGG - chr6_4:15760244-15760263 Msa0979200:CDS 30.0%
TTCTTCGGAAAAACTAACAA+AGG - chr6_4:15760259-15760278 Msa0979200:CDS 30.0%
GAAAAATCTTGATCCTTCAA+TGG + chr6_4:15760483-15760502 None:intergenic 30.0%
ATTGTGTGTAAACTATTTGC+AGG - chr6_4:15760605-15760624 Msa0979200:intron 30.0%
CTTGAAGATTAAAAACCATC+AGG - chr6_4:15760703-15760722 Msa0979200:intron 30.0%
CCATAAAATTAAGGTCATCA+AGG + chr6_4:15761264-15761283 None:intergenic 30.0%
!! CCTTGATGACCTTAATTTTA+TGG - chr6_4:15761261-15761280 Msa0979200:CDS 30.0%
! TGATGACCTTAATTTTATGG+AGG - chr6_4:15761264-15761283 Msa0979200:CDS 30.0%
TGGAAGAAATTATAAGCAAC+TGG + chr6_4:15761317-15761336 None:intergenic 30.0%
CTGAAAGTAGTGAAAAGAAT+AGG + chr6_4:15761349-15761368 None:intergenic 30.0%
! CTATTCTTTTCACTACTTTC+AGG - chr6_4:15761347-15761366 Msa0979200:intron 30.0%
! CACTACCTGTGATTTTTATA+TGG - chr6_4:15761578-15761597 Msa0979200:CDS 30.0%
ATAACACAGAAAATGTTGAG+TGG - chr6_4:15761630-15761649 Msa0979200:CDS 30.0%
TTGAGTGGTGAGAATTATTA+AGG - chr6_4:15761645-15761664 Msa0979200:intron 30.0%
! TTACAGGAATAATGCTGATT+TGG - chr6_4:15761911-15761930 Msa0979200:CDS 30.0%
!! ATAATGCTGATTTGGTTATG+TGG - chr6_4:15761919-15761938 Msa0979200:CDS 30.0%
TGATAGCAATTATTATCCTG+AGG - chr6_4:15762015-15762034 Msa0979200:intron 30.0%
CTTAATGACACATTAATAGC+AGG + chr6_4:15762089-15762108 None:intergenic 30.0%
AAAACCTGAAACATGAATGT+TGG + chr6_4:15762454-15762473 None:intergenic 30.0%
!!! AACATTCATGTTTCAGGTTT+TGG - chr6_4:15762453-15762472 Msa0979200:intron 30.0%
!!! ACATTCATGTTTCAGGTTTT+GGG - chr6_4:15762454-15762473 Msa0979200:intron 30.0%
AGTTGCTACTGAAAAAATCA+TGG + chr6_4:15762547-15762566 None:intergenic 30.0%
!!! GATTTTTTCAGTAGCAACTT+AGG - chr6_4:15762548-15762567 Msa0979200:intron 30.0%
TAGGTCATATTCATCAGAAA+AGG + chr6_4:15762583-15762602 None:intergenic 30.0%
!! CAATAACTTGCCAACATTTT+TGG - chr6_4:15762667-15762686 Msa0979200:intron 30.0%
GAAAATTTCTTCCAAGATTG+CGG - chr6_4:15762905-15762924 Msa0979200:intron 30.0%
GAATCCAGAAACAAATTACT+TGG + chr6_4:15763084-15763103 None:intergenic 30.0%
AAAGCAAGATACTAAATACC+TGG + chr6_4:15763227-15763246 None:intergenic 30.0%
!!! ATGACCAAGGTTTTAAATCT+CGG - chr6_4:15763248-15763267 Msa0979200:intron 30.0%
! ATAACCGAGATTTAAAACCT+TGG + chr6_4:15763255-15763274 None:intergenic 30.0%
CTATTATTGTGCTTGTGATA+TGG - chr6_4:15763311-15763330 Msa0979200:intron 30.0%
! AAAAGCATAAAATTCCTGGT+GGG + chr6_4:15763574-15763593 None:intergenic 30.0%
! AAAAAGCATAAAATTCCTGG+TGG + chr6_4:15763575-15763594 None:intergenic 30.0%
!!! TTCTGCATACATGTTGATTT+TGG - chr6_4:15763600-15763619 Msa0979200:intron 30.0%
AGTGTTGTCTTCATTCAATA+GGG - chr6_4:15763714-15763733 Msa0979200:intron 30.0%
TTCAATAGGGAGATGTTTAA+TGG - chr6_4:15763727-15763746 Msa0979200:intron 30.0%
AAGTCCTCACTACAAAATTT+GGG + chr6_4:15763827-15763846 None:intergenic 30.0%
TAAGTCCTCACTACAAAATT+TGG + chr6_4:15763828-15763847 None:intergenic 30.0%
TAACAAAGCTGAAAAATCCT+TGG - chr6_4:15764075-15764094 Msa0979200:five_prime_UTR 30.0%
AACAAAGCTGAAAAATCCTT+GGG - chr6_4:15764076-15764095 Msa0979200:five_prime_UTR 30.0%
!! AACTTTTGGAAATTGTATGC+TGG - chr6_4:15764234-15764253 Msa0979200:five_prime_UTR 30.0%
!! CATGTTGATTCTATGGAGTT+TGG + chr6_4:15756923-15756942 None:intergenic 35.0%
!! GAGTTTGCATGTTGATTCTA+TGG + chr6_4:15756930-15756949 None:intergenic 35.0%
!! TCATTTTTGAACCCTCATGA+TGG - chr6_4:15756948-15756967 Msa0979200:three_prime_UTR 35.0%
AAGGTGAAAATTGAGAGAGA+GGG + chr6_4:15757025-15757044 None:intergenic 35.0%
! TCTCTCTCAATTTTCACCTT+GGG - chr6_4:15757025-15757044 Msa0979200:three_prime_UTR 35.0%
! GGCACTGAATATGATTTATC+AGG - chr6_4:15757083-15757102 Msa0979200:three_prime_UTR 35.0%
! ATGGTCTGAAGCAAAAAACA+AGG - chr6_4:15757106-15757125 Msa0979200:three_prime_UTR 35.0%
! AGTAGTGTTGTTAGAGTTTG+AGG - chr6_4:15757352-15757371 Msa0979200:three_prime_UTR 35.0%
AATTGCCTGAATTAAGGTGT+AGG - chr6_4:15757539-15757558 Msa0979200:intron 35.0%
TGTGAGTGTGTTATGATTCA+AGG - chr6_4:15757604-15757623 Msa0979200:intron 35.0%
GGAATGTAAATCCTCTCTTA+AGG - chr6_4:15757656-15757675 Msa0979200:intron 35.0%
TTCAAAAACACCAGCAACTT+AGG + chr6_4:15758062-15758081 None:intergenic 35.0%
AATGATGTAAGCATGTCTGA+TGG - chr6_4:15758180-15758199 Msa0979200:three_prime_UTR 35.0%
! TGTTGTGCACAAGATTTGTT+TGG - chr6_4:15758433-15758452 Msa0979200:three_prime_UTR 35.0%
!!! GGTGTTTTTTTTTTGGAGTG+AGG - chr6_4:15758454-15758473 Msa0979200:three_prime_UTR 35.0%
!! ACAAGATATTTTTGTGGCCT+TGG - chr6_4:15758488-15758507 Msa0979200:three_prime_UTR 35.0%
AGTCGAAACACAATGTATTG+AGG - chr6_4:15758559-15758578 Msa0979200:three_prime_UTR 35.0%
ATTGAAATCCAGGGAAATCT+TGG - chr6_4:15758738-15758757 Msa0979200:three_prime_UTR 35.0%
AGGTACCAAGATAATGTCAA+TGG + chr6_4:15759013-15759032 None:intergenic 35.0%
TATTAGGAACAGGCAGAATA+TGG + chr6_4:15759233-15759252 None:intergenic 35.0%
TCAGAGGAATTATTAGGAAC+AGG + chr6_4:15759243-15759262 None:intergenic 35.0%
CTCTTCTCAGAGGAATTATT+AGG + chr6_4:15759249-15759268 None:intergenic 35.0%
! ATCTTCGTATCAGTTTTCTG+AGG - chr6_4:15759386-15759405 Msa0979200:three_prime_UTR 35.0%
TTAGTGTACAAAATCAGTGC+TGG + chr6_4:15759462-15759481 None:intergenic 35.0%
!!! GCACTGATTTTGTACACTAA+CGG - chr6_4:15759462-15759481 Msa0979200:CDS 35.0%
!!! CACTGATTTTGTACACTAAC+GGG - chr6_4:15759463-15759482 Msa0979200:CDS 35.0%
AGACAAATTGCCTTCTTCAT+TGG - chr6_4:15759545-15759564 Msa0979200:CDS 35.0%
AAGAAGAAGGTTTGAAAGGA+TGG + chr6_4:15759793-15759812 None:intergenic 35.0%
TTATACTGAATAGCATGTCG+CGG + chr6_4:15760005-15760024 None:intergenic 35.0%
! TTTTCATGTTGGTACCTGTT+TGG - chr6_4:15760108-15760127 Msa0979200:intron 35.0%
TTCAATCATCACACTTGTGA+TGG - chr6_4:15760295-15760314 Msa0979200:intron 35.0%
! ATGGGAGAATATTTTGCTGA+TGG - chr6_4:15760404-15760423 Msa0979200:intron 35.0%
! TAATGGGTCATTGTACTTCA+AGG - chr6_4:15760507-15760526 Msa0979200:intron 35.0%
GATGTTTGACAAGTTATACC+AGG - chr6_4:15760531-15760550 Msa0979200:intron 35.0%
TAAACTATTTGCAGGCTGAT+TGG - chr6_4:15760613-15760632 Msa0979200:intron 35.0%
AAACATGGTAAAGAACCTGA+TGG + chr6_4:15760721-15760740 None:intergenic 35.0%
! AGAGGCTTTTGTAGAAACTT+GGG + chr6_4:15760835-15760854 None:intergenic 35.0%
! AAGAGGCTTTTGTAGAAACT+TGG + chr6_4:15760836-15760855 None:intergenic 35.0%
ACTTCAGCAATAAGTTTGCA+TGG - chr6_4:15760992-15761011 Msa0979200:intron 35.0%
!! ATAATGGATGGTGACACAAA+AGG + chr6_4:15761043-15761062 None:intergenic 35.0%
! GCGAAAGTCATAATAATGGA+TGG + chr6_4:15761055-15761074 None:intergenic 35.0%
CACAGCGAAAGTCATAATAA+TGG + chr6_4:15761059-15761078 None:intergenic 35.0%
TCTGATATGAGATGTGAAGT+TGG - chr6_4:15761108-15761127 Msa0979200:intron 35.0%
CTGATATGAGATGTGAAGTT+GGG - chr6_4:15761109-15761128 Msa0979200:intron 35.0%
TGATATGAGATGTGAAGTTG+GGG - chr6_4:15761110-15761129 Msa0979200:intron 35.0%
AGACCACTGTTAATAGATGA+GGG + chr6_4:15761190-15761209 None:intergenic 35.0%
AAAAGAATAGGTACGAGGAA+TGG + chr6_4:15761337-15761356 None:intergenic 35.0%
TAGTGAAAAGAATAGGTACG+AGG + chr6_4:15761342-15761361 None:intergenic 35.0%
CCTATGATAAACAAGATTGC+CGG - chr6_4:15761378-15761397 Msa0979200:intron 35.0%
ACTTTACGTCAAGTTCATTG+TGG + chr6_4:15761434-15761453 None:intergenic 35.0%
TAATGACTACAACGACCTAA+TGG - chr6_4:15761605-15761624 Msa0979200:CDS 35.0%
! TTTTCTGTGTTATCGCCATT+AGG + chr6_4:15761623-15761642 None:intergenic 35.0%
TCTATTCACGAACTCACAAA+GGG - chr6_4:15761729-15761748 Msa0979200:intron 35.0%
GGAGTGAAGTCTATTTCAAT+AGG + chr6_4:15761798-15761817 None:intergenic 35.0%
!! TGATCAACAAAAAGTACCTC+AGG + chr6_4:15762034-15762053 None:intergenic 35.0%
!! CTTTAAGATGTTGTGGAAAG+CGG - chr6_4:15762289-15762308 Msa0979200:CDS 35.0%
ATCTCCAACATTCATGTTTC+AGG - chr6_4:15762447-15762466 Msa0979200:intron 35.0%
! TTATCTCAATGTGTTGCTAG+AGG - chr6_4:15762483-15762502 Msa0979200:intron 35.0%
GATGAATATGACCTACATTC+AGG - chr6_4:15762588-15762607 Msa0979200:intron 35.0%
TCACAAATAGACCTGAATGT+AGG + chr6_4:15762602-15762621 None:intergenic 35.0%
!!! AACTTGCCAACATTTTTGGT+TGG - chr6_4:15762671-15762690 Msa0979200:intron 35.0%
CAATGACCAACCAAAAATGT+TGG + chr6_4:15762680-15762699 None:intergenic 35.0%
ATGTTAAGAGCTTACGCTTT+GGG + chr6_4:15763017-15763036 None:intergenic 35.0%
AATGTTAAGAGCTTACGCTT+TGG + chr6_4:15763018-15763037 None:intergenic 35.0%
!! GCTTCCAAGTAATTTGTTTC+TGG - chr6_4:15763077-15763096 Msa0979200:intron 35.0%
TTGTGATATGGTCTCTATTC+AGG - chr6_4:15763323-15763342 Msa0979200:intron 35.0%
TGTGATATGGTCTCTATTCA+GGG - chr6_4:15763324-15763343 Msa0979200:intron 35.0%
AAAGCATAAAATTCCTGGTG+GGG + chr6_4:15763573-15763592 None:intergenic 35.0%
! CAACTTTTTATCTGCACTTG+TGG - chr6_4:15763668-15763687 Msa0979200:intron 35.0%
! GAGTGTTGTCTTCATTCAAT+AGG - chr6_4:15763713-15763732 Msa0979200:intron 35.0%
! TAGTCCCAAATTTTGTAGTG+AGG - chr6_4:15763820-15763839 Msa0979200:intron 35.0%
!! AGCATTTTTCAAACCGAGTT+TGG - chr6_4:15763960-15763979 Msa0979200:five_prime_UTR 35.0%
!! ATTTTTCAAACCGAGTTTGG+AGG - chr6_4:15763963-15763982 Msa0979200:five_prime_UTR 35.0%
!! TTTTTCAAACCGAGTTTGGA+GGG - chr6_4:15763964-15763983 Msa0979200:five_prime_UTR 35.0%
GACATGCTGTTATTCGATTT+AGG - chr6_4:15764145-15764164 Msa0979200:five_prime_UTR 35.0%
GGTGAGGATTGAAGAATTTG+GGG + chr6_4:15756901-15756920 None:intergenic 40.0%
GGGTGAGGATTGAAGAATTT+GGG + chr6_4:15756902-15756921 None:intergenic 40.0%
TGGGTGAGGATTGAAGAATT+TGG + chr6_4:15756903-15756922 None:intergenic 40.0%
CAAGGTGAAAATTGAGAGAG+AGG + chr6_4:15757026-15757045 None:intergenic 40.0%
! CTCTCTCTCAATTTTCACCT+TGG - chr6_4:15757024-15757043 Msa0979200:three_prime_UTR 40.0%
TCAAACAAGAACCTCTTGCA+TGG - chr6_4:15757061-15757080 Msa0979200:three_prime_UTR 40.0%
CAAACAAGAACCTCTTGCAT+GGG - chr6_4:15757062-15757081 Msa0979200:three_prime_UTR 40.0%
GGAAGATTAGAGTTAGGGTT+TGG - chr6_4:15757127-15757146 Msa0979200:three_prime_UTR 40.0%
TGCTCAGCTGCAATAATTGA+TGG - chr6_4:15757151-15757170 Msa0979200:three_prime_UTR 40.0%
GCTCAGCTGCAATAATTGAT+GGG - chr6_4:15757152-15757171 Msa0979200:three_prime_UTR 40.0%
!!! GTTCTGTTTTTGCTGATTGC+TGG - chr6_4:15757195-15757214 Msa0979200:three_prime_UTR 40.0%
ACACTCCTACACCTTAATTC+AGG + chr6_4:15757547-15757566 None:intergenic 40.0%
! TTGGGTATCCGCTTCTTTTA+AGG - chr6_4:15757975-15757994 Msa0979200:intron 40.0%
CATAACGGCCTTAAAAGAAG+CGG + chr6_4:15757986-15758005 None:intergenic 40.0%
ATTAGTACATCACTCACGCA+AGG + chr6_4:15758211-15758230 None:intergenic 40.0%
TGCGTGAGTGATGTACTAAT+AGG - chr6_4:15758211-15758230 Msa0979200:intron 40.0%
GCGTGAGTGATGTACTAATA+GGG - chr6_4:15758212-15758231 Msa0979200:intron 40.0%
TGTATGTATGTGGTTCTTGC+AGG - chr6_4:15758271-15758290 Msa0979200:intron 40.0%
GTATGTATGTGGTTCTTGCA+GGG - chr6_4:15758272-15758291 Msa0979200:intron 40.0%
TATGTATGTGGTTCTTGCAG+GGG - chr6_4:15758273-15758292 Msa0979200:intron 40.0%
ACTGGTAGGTGTTTGGAAAT+GGG - chr6_4:15758323-15758342 Msa0979200:intron 40.0%
AAATTGCTATATCTGCGCCA+AGG + chr6_4:15758508-15758527 None:intergenic 40.0%
! GAATTTGGTTCATTTGACCG+AGG - chr6_4:15758534-15758553 Msa0979200:three_prime_UTR 40.0%
! CGCCAACATTTTTCTTCCTT+AGG + chr6_4:15759131-15759150 None:intergenic 40.0%
! TCCTCTGAGAAGAGTAGAAA+TGG - chr6_4:15759255-15759274 Msa0979200:intron 40.0%
TCCATTTCTACTCTTCTCAG+AGG + chr6_4:15759259-15759278 None:intergenic 40.0%
TGGATCTTCACCTAATCCAA+AGG + chr6_4:15759442-15759461 None:intergenic 40.0%
GGCTTCTTAATGCAACATGT+GGG - chr6_4:15759688-15759707 Msa0979200:CDS 40.0%
GCACAAGAAGAAGGTTTGAA+AGG + chr6_4:15759797-15759816 None:intergenic 40.0%
TCAAACCTTCTTCTTGTGCT+TGG - chr6_4:15759798-15759817 Msa0979200:intron 40.0%
AAGTTCCAAGCACAAGAAGA+AGG + chr6_4:15759806-15759825 None:intergenic 40.0%
!!! CTTTTTTTTGCTCCACTCCA+AGG + chr6_4:15759854-15759873 None:intergenic 40.0%
CTTGGAGTGGAGCAAAAAAA+AGG - chr6_4:15759852-15759871 Msa0979200:intron 40.0%
ATTGTTTGCGAATGTCAGTG+AGG - chr6_4:15759943-15759962 Msa0979200:intron 40.0%
TAAATAGGGTGCAGACTTGA+TGG - chr6_4:15760051-15760070 Msa0979200:intron 40.0%
!!! GACTTGATGGTTTTCAAGTC+TGG - chr6_4:15760064-15760083 Msa0979200:intron 40.0%
ATTCGCGAAGATAGCGAATA+AGG + chr6_4:15760228-15760247 None:intergenic 40.0%
CTGATGTCACCTAACTTACT+TGG + chr6_4:15760651-15760670 None:intergenic 40.0%
! GAATACCCTGAACTTTTTGC+AGG - chr6_4:15760792-15760811 Msa0979200:intron 40.0%
CTTGACCTGCAAAAAGTTCA+GGG + chr6_4:15760800-15760819 None:intergenic 40.0%
!!! GTAGAAACTTGGGTTGGTTT+TGG + chr6_4:15760825-15760844 None:intergenic 40.0%
! GCTTTTGTAGAAACTTGGGT+TGG + chr6_4:15760831-15760850 None:intergenic 40.0%
TAAGACTGTAGCTGCTATTC+AGG - chr6_4:15760905-15760924 Msa0979200:intron 40.0%
GATATGAGATGTGAAGTTGG+GGG - chr6_4:15761111-15761130 Msa0979200:intron 40.0%
ATATGAGATGTGAAGTTGGG+GGG - chr6_4:15761112-15761131 Msa0979200:intron 40.0%
CATCCCTCATCTATTAACAG+TGG - chr6_4:15761184-15761203 Msa0979200:intron 40.0%
GAGACCACTGTTAATAGATG+AGG + chr6_4:15761191-15761210 None:intergenic 40.0%
! CCGGCAATCTTGTTTATCAT+AGG + chr6_4:15761381-15761400 None:intergenic 40.0%
ATGATAAACAAGATTGCCGG+TGG - chr6_4:15761381-15761400 Msa0979200:intron 40.0%
TCATTGTGGTGAGCTACAAA+TGG + chr6_4:15761420-15761439 None:intergenic 40.0%
AGCTGCTTGAGATAAAGTTC+TGG + chr6_4:15761474-15761493 None:intergenic 40.0%
AGAACTTTATCTCAAGCAGC+TGG - chr6_4:15761473-15761492 Msa0979200:intron 40.0%
! TGAACTCAGGAGTATGTGTA+AGG + chr6_4:15761560-15761579 None:intergenic 40.0%
AAATCACAGGTAGTGAACTC+AGG + chr6_4:15761573-15761592 None:intergenic 40.0%
GTCTATTCACGAACTCACAA+AGG - chr6_4:15761728-15761747 Msa0979200:intron 40.0%
CTAATTTCTCAAAGCCTGCA+AGG - chr6_4:15761966-15761985 Msa0979200:CDS 40.0%
!! GTTCTGGCTTTAAGATGTTG+TGG - chr6_4:15762282-15762301 Msa0979200:CDS 40.0%
CCTAAGTGAATGCACAAGTT+CGG - chr6_4:15762322-15762341 Msa0979200:CDS 40.0%
TATATCAACCTCTAGCTGAC+AGG - chr6_4:15762408-15762427 Msa0979200:intron 40.0%
! CATTGCACATGTTCTGAGTA+TGG - chr6_4:15762695-15762714 Msa0979200:intron 40.0%
GATTGCTTGATGTGTGATCA+AGG - chr6_4:15762719-15762738 Msa0979200:intron 40.0%
GATGAGGATGGAAGGTTTAA+AGG - chr6_4:15762956-15762975 Msa0979200:intron 40.0%
GATGGAAGGTTTAAAGGCTT+TGG - chr6_4:15762962-15762981 Msa0979200:CDS 40.0%
TCTATCTAGCATTAGATGCC+AGG - chr6_4:15763206-15763225 Msa0979200:exon 40.0%
GTATCTTGCTTTCATGACCA+AGG - chr6_4:15763235-15763254 Msa0979200:five_prime_UTR 40.0%
! ATGCTTTGAGTGTAGTGAAC+TGG - chr6_4:15763453-15763472 Msa0979200:intron 40.0%
!!! ATATTTTTTGCTTCCCCACC+AGG - chr6_4:15763557-15763576 Msa0979200:intron 40.0%
!! TGAGCATTGGAGAAACGAAA+TGG - chr6_4:15763874-15763893 Msa0979200:intron 40.0%
AGCAACTGCATTGTCTTTCT+TGG + chr6_4:15764004-15764023 None:intergenic 40.0%
AAAGCTGAAAAATCCTTGGG+AGG - chr6_4:15764079-15764098 Msa0979200:five_prime_UTR 40.0%
!! AGGCTGGTTCCAATTTGTTA+GGG - chr6_4:15764102-15764121 Msa0979200:five_prime_UTR 40.0%
GGTGATTGTCCCTAACAAAT+TGG + chr6_4:15764114-15764133 None:intergenic 40.0%
AACTCCACAAACAACACTGT+AGG + chr6_4:15764178-15764197 None:intergenic 40.0%
!! TACAGTGTTGTTTGTGGAGT+TGG - chr6_4:15764177-15764196 Msa0979200:five_prime_UTR 40.0%
GATTCTATGGAGTTTGGGTG+AGG + chr6_4:15756917-15756936 None:intergenic 45.0%
GTTCAAGGGAAGAGGATAAG+AGG + chr6_4:15756998-15757017 None:intergenic 45.0%
ATATTCAGTGCCCATGCAAG+AGG + chr6_4:15757075-15757094 None:intergenic 45.0%
CTCAAGACCTGATGTTGTTG+TGG - chr6_4:15757915-15757934 Msa0979200:intron 45.0%
AGACCTGATGTTGTTGTGGT+AGG - chr6_4:15757919-15757938 Msa0979200:intron 45.0%
ACTCCTACCACAACAACATC+AGG + chr6_4:15757925-15757944 None:intergenic 45.0%
! CTCTTTTGTGACCAATGCCT+AGG + chr6_4:15758110-15758129 None:intergenic 45.0%
GACTGGTAGGTGTTTGGAAA+TGG - chr6_4:15758322-15758341 Msa0979200:intron 45.0%
CATTGTGTTTCGACTGTCCT+CGG + chr6_4:15758554-15758573 None:intergenic 45.0%
GAAATCCAGGGAAATCTTGG+TGG - chr6_4:15758741-15758760 Msa0979200:three_prime_UTR 45.0%
AATCTTGGTGGAGCTCGAAT+AGG - chr6_4:15758753-15758772 Msa0979200:three_prime_UTR 45.0%
TCCAGCAACAAATTCGCAGA+CGG + chr6_4:15758792-15758811 None:intergenic 45.0%
ACCTGTAGGACCAATGAAGA+AGG + chr6_4:15759558-15759577 None:intergenic 45.0%
GGGCTTCTTAATGCAACATG+TGG - chr6_4:15759687-15759706 Msa0979200:CDS 45.0%
AGTTCGAGATACTACTGACC+TGG + chr6_4:15760552-15760571 None:intergenic 45.0%
! CCTAACTTACTTGGTGACTC+TGG + chr6_4:15760642-15760661 None:intergenic 45.0%
CCAGAGTCACCAAGTAAGTT+AGG - chr6_4:15760639-15760658 Msa0979200:intron 45.0%
CCTTGACCTGCAAAAAGTTC+AGG + chr6_4:15760801-15760820 None:intergenic 45.0%
! CCTGAACTTTTTGCAGGTCA+AGG - chr6_4:15760798-15760817 Msa0979200:intron 45.0%
! AGGTTTTTGTGCAGTTGGGT+TGG + chr6_4:15760862-15760881 None:intergenic 45.0%
! CAGCAGGTTTTTGTGCAGTT+GGG + chr6_4:15760866-15760885 None:intergenic 45.0%
GCAACTGGCATCAGAATACT+TGG + chr6_4:15761302-15761321 None:intergenic 45.0%
TCAAGCAGCTGGTTGTTTGT+GGG - chr6_4:15761484-15761503 Msa0979200:intron 45.0%
TCCATGAAGATGTACCTTGC+AGG + chr6_4:15761983-15762002 None:intergenic 45.0%
CCGAACTTGTGCATTCACTT+AGG + chr6_4:15762325-15762344 None:intergenic 45.0%
AACACAAACCTGTCAGCTAG+AGG + chr6_4:15762419-15762438 None:intergenic 45.0%
TGCTAGAGGCTATTGATCTG+AGG - chr6_4:15762497-15762516 Msa0979200:intron 45.0%
TTTCTTCCAAGATTGCGGAG+AGG - chr6_4:15762910-15762929 Msa0979200:intron 45.0%
TGTACGTCTTGCTTCAGATG+AGG - chr6_4:15762940-15762959 Msa0979200:intron 45.0%
TTGCTTCAGATGAGGATGGA+AGG - chr6_4:15762948-15762967 Msa0979200:intron 45.0%
TGTTGAGTTTGCAACTGCAG+TGG - chr6_4:15762988-15763007 Msa0979200:CDS 45.0%
TTAGAACCTCCCTCCAAACT+CGG + chr6_4:15763976-15763995 None:intergenic 45.0%
CAGTTGCTTGATGTGCTTAC+CGG - chr6_4:15764016-15764035 Msa0979200:five_prime_UTR 45.0%
!! TTCAGCTTTGTTACGCTCAG+CGG + chr6_4:15764068-15764087 None:intergenic 45.0%
! GAGGCTGGTTCCAATTTGTT+AGG - chr6_4:15764101-15764120 Msa0979200:five_prime_UTR 45.0%
TAGGGACAATCACCTACAAG+AGG - chr6_4:15764120-15764139 Msa0979200:five_prime_UTR 45.0%
AGGGACAATCACCTACAAGA+GGG - chr6_4:15764121-15764140 Msa0979200:five_prime_UTR 45.0%
!! TCCTCCTACAGTGTTGTTTG+TGG - chr6_4:15764171-15764190 Msa0979200:five_prime_UTR 45.0%
TCCACAAACAACACTGTAGG+AGG + chr6_4:15764175-15764194 None:intergenic 45.0%
!! AATATATAATAAAATGAAAT+AGG + chr6_4:15759881-15759900 None:intergenic 5.0%
GAGAGAGACATGGGAAGAAG+GGG + chr6_4:15756859-15756878 None:intergenic 50.0%
CGAGAGAGACATGGGAAGAA+GGG + chr6_4:15756860-15756879 None:intergenic 50.0%
CCTTCTTCCCATGTCTCTCT+CGG - chr6_4:15756858-15756877 Msa0979200:three_prime_UTR 50.0%
TTGGGGCTAAGAGAGTGAGA+GGG + chr6_4:15756884-15756903 None:intergenic 50.0%
! TTTGGGGCTAAGAGAGTGAG+AGG + chr6_4:15756885-15756904 None:intergenic 50.0%
AGAGAGAGGGACACGTTCAA+GGG + chr6_4:15757012-15757031 None:intergenic 50.0%
TGCAGCAGATCCTAAGTTGC+TGG - chr6_4:15758049-15758068 Msa0979200:intron 50.0%
GTAACACCGTACCTGTACCT+AGG - chr6_4:15758090-15758109 Msa0979200:three_prime_UTR 50.0%
CCAATGCCTAGGTACAGGTA+CGG + chr6_4:15758099-15758118 None:intergenic 50.0%
TGTGACCAATGCCTAGGTAC+AGG + chr6_4:15758104-15758123 None:intergenic 50.0%
GCTTTGGCAATCACCAATCC+TGG - chr6_4:15758300-15758319 Msa0979200:intron 50.0%
!! ATCACCAATCCTGGACTGGT+AGG - chr6_4:15758309-15758328 Msa0979200:intron 50.0%
AACACCTACCAGTCCAGGAT+TGG + chr6_4:15758316-15758335 None:intergenic 50.0%
!! ATCCTGGACTGGTAGGTGTT+TGG - chr6_4:15758316-15758335 Msa0979200:intron 50.0%
TTCCAAACACCTACCAGTCC+AGG + chr6_4:15758321-15758340 None:intergenic 50.0%
!! ACCGTCTGCGAATTTGTTGC+TGG - chr6_4:15758788-15758807 Msa0979200:three_prime_UTR 50.0%
TTGCTGGAATACTCGCGACT+TGG - chr6_4:15758804-15758823 Msa0979200:three_prime_UTR 50.0%
! ATACTCGCGACTTGGCTTAG+TGG - chr6_4:15758812-15758831 Msa0979200:three_prime_UTR 50.0%
TCTGCATAGCTGAGTGCAAG+TGG + chr6_4:15758851-15758870 None:intergenic 50.0%
GCCTTCTTCATTGGTCCTAC+AGG - chr6_4:15759554-15759573 Msa0979200:CDS 50.0%
CTTGGAACTTCCCTGCTTTG+TGG - chr6_4:15759816-15759835 Msa0979200:intron 50.0%
TGCAATGCCACCACAAAGCA+GGG + chr6_4:15759829-15759848 None:intergenic 50.0%
TTGCAATGCCACCACAAAGC+AGG + chr6_4:15759830-15759849 None:intergenic 50.0%
TGTGGTGGCATTGCAATCCT+TGG - chr6_4:15759834-15759853 Msa0979200:intron 50.0%
TGGCATTGCAATCCTTGGAG+TGG - chr6_4:15759839-15759858 Msa0979200:intron 50.0%
GAATGTCAGTGAGGTTAGCG+TGG - chr6_4:15759952-15759971 Msa0979200:intron 50.0%
! GCAGCAGGTTTTTGTGCAGT+TGG + chr6_4:15760867-15760886 None:intergenic 50.0%
GCTACAGTCTTAGCATGTGG+TGG + chr6_4:15760897-15760916 None:intergenic 50.0%
GCAGCTACAGTCTTAGCATG+TGG + chr6_4:15760900-15760919 None:intergenic 50.0%
TGTAGCTGCTATTCAGGCAG+AGG - chr6_4:15760911-15760930 Msa0979200:intron 50.0%
ATGTGAAGTTGGGGGGAGAA+GGG - chr6_4:15761119-15761138 Msa0979200:intron 50.0%
CTCAAGCAGCTGGTTGTTTG+TGG - chr6_4:15761483-15761502 Msa0979200:intron 50.0%
GCCTGCAAGGTACATCTTCA+TGG - chr6_4:15761979-15761998 Msa0979200:CDS 50.0%
GATGTTGTGGAAAGCGGTGA+AGG - chr6_4:15762295-15762314 Msa0979200:CDS 50.0%
TGATGTGTGATCAAGGCCCA+TGG - chr6_4:15762726-15762745 Msa0979200:intron 50.0%
CAACAACCTCTCCGCAATCT+TGG + chr6_4:15762919-15762938 None:intergenic 50.0%
CGTCTTGCTTCAGATGAGGA+TGG - chr6_4:15762944-15762963 Msa0979200:intron 50.0%
TTCAAACCGAGTTTGGAGGG+AGG - chr6_4:15763967-15763986 Msa0979200:five_prime_UTR 50.0%
GAGTTTGGAGGGAGGTTCTA+AGG - chr6_4:15763975-15763994 Msa0979200:five_prime_UTR 50.0%
GCGGCAATCGTATTCATGAC+CGG + chr6_4:15764038-15764057 None:intergenic 50.0%
TGTTACGCTCAGCGGTAATG+AGG + chr6_4:15764060-15764079 None:intergenic 50.0%
GCTGAAAAATCCTTGGGAGG+AGG - chr6_4:15764082-15764101 Msa0979200:five_prime_UTR 50.0%
AAAAATCCTTGGGAGGAGGC+TGG - chr6_4:15764086-15764105 Msa0979200:five_prime_UTR 50.0%
CCGAGAGAGACATGGGAAGA+AGG + chr6_4:15756861-15756880 None:intergenic 55.0%
AGGGACACGTTCAAGGGAAG+AGG + chr6_4:15757006-15757025 None:intergenic 55.0%
GAGAGAGAGGGACACGTTCA+AGG + chr6_4:15757013-15757032 None:intergenic 55.0%
CCGTACCTGTACCTAGGCAT+TGG - chr6_4:15758096-15758115 Msa0979200:three_prime_UTR 55.0%
ATGTGGTTCTTGCAGGGGAG+CGG - chr6_4:15758278-15758297 Msa0979200:intron 55.0%
GGCAATCACCAATCCTGGAC+TGG - chr6_4:15758305-15758324 Msa0979200:intron 55.0%
GAGCTCCACCAAGATTTCCC+TGG + chr6_4:15758749-15758768 None:intergenic 55.0%
GGAACTTCCCTGCTTTGTGG+TGG - chr6_4:15759819-15759838 Msa0979200:intron 55.0%
GTCAGTGAGGTTAGCGTGGA+TGG - chr6_4:15759956-15759975 Msa0979200:intron 55.0%
!! TGCAGTTGGGTTGGCAGAAG+AGG + chr6_4:15760853-15760872 None:intergenic 55.0%
!! TGTGGTGGACGATATGCAGC+AGG + chr6_4:15760882-15760901 None:intergenic 55.0%
GATGTGAAGTTGGGGGGAGA+AGG - chr6_4:15761118-15761137 Msa0979200:intron 55.0%
GCAGCTGGTTGTTTGTGGGA+TGG - chr6_4:15761488-15761507 Msa0979200:intron 55.0%
TCTGCACTTGTGGCACTTGC+AGG - chr6_4:15763678-15763697 Msa0979200:intron 55.0%
GGCACTTGCAGGAACTGCAT+TGG - chr6_4:15763689-15763708 Msa0979200:intron 55.0%
TACGCTCAGCGGTAATGAGG+CGG + chr6_4:15764057-15764076 None:intergenic 55.0%
ACAGCATGTCGCCCTCTTGT+AGG + chr6_4:15764135-15764154 None:intergenic 55.0%
GAGAGGGCCGAGAGAGACAT+GGG + chr6_4:15756868-15756887 None:intergenic 60.0%
TGAGAGGGCCGAGAGAGACA+TGG + chr6_4:15756869-15756888 None:intergenic 60.0%
TTCTTGCAGGGGAGCGGCTT+TGG - chr6_4:15758284-15758303 Msa0979200:intron 60.0%
! CTCGCGACTTGGCTTAGTGG+AGG - chr6_4:15758815-15758834 Msa0979200:three_prime_UTR 60.0%
TTGGAACCAGCCTCCTCCCA+AGG + chr6_4:15764095-15764114 None:intergenic 60.0%
! TGGACGTGCTGCTGCGCCAC+CGG + chr6_4:15761400-15761419 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 15756824 15764279 15756824 ID=Msa0979200;Name=Msa0979200
chr6_4 mRNA 15756824 15764279 15756824 ID=Msa0979200-mRNA-1;Parent=Msa0979200;Name=Msa0979200-mRNA-1;_AED=0.21;_eAED=0.21;_QI=389|0.68|0.64|1|0.56|0.64|17|1505|470
chr6_4 exon 15756824 15757403 15756824 ID=Msa0979200-mRNA-1:exon:5119;Parent=Msa0979200-mRNA-1
chr6_4 exon 15758082 15758199 15758082 ID=Msa0979200-mRNA-1:exon:5118;Parent=Msa0979200-mRNA-1
chr6_4 exon 15758325 15758850 15758325 ID=Msa0979200-mRNA-1:exon:5117;Parent=Msa0979200-mRNA-1
chr6_4 exon 15759067 15759186 15759067 ID=Msa0979200-mRNA-1:exon:5116;Parent=Msa0979200-mRNA-1
chr6_4 exon 15759277 15759734 15759277 ID=Msa0979200-mRNA-1:exon:5115;Parent=Msa0979200-mRNA-1
chr6_4 exon 15760171 15760289 15760171 ID=Msa0979200-mRNA-1:exon:5114;Parent=Msa0979200-mRNA-1
chr6_4 exon 15760452 15760476 15760452 ID=Msa0979200-mRNA-1:exon:5113;Parent=Msa0979200-mRNA-1
chr6_4 exon 15760551 15760614 15760551 ID=Msa0979200-mRNA-1:exon:5112;Parent=Msa0979200-mRNA-1
chr6_4 exon 15761203 15761351 15761203 ID=Msa0979200-mRNA-1:exon:5111;Parent=Msa0979200-mRNA-1
chr6_4 exon 15761386 15761421 15761386 ID=Msa0979200-mRNA-1:exon:5110;Parent=Msa0979200-mRNA-1
chr6_4 exon 15761528 15761652 15761528 ID=Msa0979200-mRNA-1:exon:5109;Parent=Msa0979200-mRNA-1
chr6_4 exon 15761764 15762011 15761764 ID=Msa0979200-mRNA-1:exon:5108;Parent=Msa0979200-mRNA-1
chr6_4 exon 15762197 15762353 15762197 ID=Msa0979200-mRNA-1:exon:5107;Parent=Msa0979200-mRNA-1
chr6_4 exon 15762777 15762810 15762777 ID=Msa0979200-mRNA-1:exon:5106;Parent=Msa0979200-mRNA-1
chr6_4 exon 15762961 15763068 15762961 ID=Msa0979200-mRNA-1:exon:5105;Parent=Msa0979200-mRNA-1
chr6_4 exon 15763167 15763256 15763167 ID=Msa0979200-mRNA-1:exon:5104;Parent=Msa0979200-mRNA-1
chr6_4 exon 15763930 15764279 15763930 ID=Msa0979200-mRNA-1:exon:5103;Parent=Msa0979200-mRNA-1
chr6_4 five_prime_UTR 15763930 15764279 15763930 ID=Msa0979200-mRNA-1:five_prime_utr;Parent=Msa0979200-mRNA-1
chr6_4 five_prime_UTR 15763218 15763256 15763218 ID=Msa0979200-mRNA-1:five_prime_utr;Parent=Msa0979200-mRNA-1
chr6_4 CDS 15763167 15763217 15763167 ID=Msa0979200-mRNA-1:cds;Parent=Msa0979200-mRNA-1
chr6_4 CDS 15762961 15763068 15762961 ID=Msa0979200-mRNA-1:cds;Parent=Msa0979200-mRNA-1
chr6_4 CDS 15762777 15762810 15762777 ID=Msa0979200-mRNA-1:cds;Parent=Msa0979200-mRNA-1
chr6_4 CDS 15762197 15762353 15762197 ID=Msa0979200-mRNA-1:cds;Parent=Msa0979200-mRNA-1
chr6_4 CDS 15761764 15762011 15761764 ID=Msa0979200-mRNA-1:cds;Parent=Msa0979200-mRNA-1
chr6_4 CDS 15761528 15761652 15761528 ID=Msa0979200-mRNA-1:cds;Parent=Msa0979200-mRNA-1
chr6_4 CDS 15761386 15761421 15761386 ID=Msa0979200-mRNA-1:cds;Parent=Msa0979200-mRNA-1
chr6_4 CDS 15761203 15761351 15761203 ID=Msa0979200-mRNA-1:cds;Parent=Msa0979200-mRNA-1
chr6_4 CDS 15760551 15760614 15760551 ID=Msa0979200-mRNA-1:cds;Parent=Msa0979200-mRNA-1
chr6_4 CDS 15760452 15760476 15760452 ID=Msa0979200-mRNA-1:cds;Parent=Msa0979200-mRNA-1
chr6_4 CDS 15760171 15760289 15760171 ID=Msa0979200-mRNA-1:cds;Parent=Msa0979200-mRNA-1
chr6_4 CDS 15759438 15759734 15759438 ID=Msa0979200-mRNA-1:cds;Parent=Msa0979200-mRNA-1
chr6_4 three_prime_UTR 15759277 15759437 15759277 ID=Msa0979200-mRNA-1:three_prime_utr;Parent=Msa0979200-mRNA-1
chr6_4 three_prime_UTR 15759067 15759186 15759067 ID=Msa0979200-mRNA-1:three_prime_utr;Parent=Msa0979200-mRNA-1
chr6_4 three_prime_UTR 15758325 15758850 15758325 ID=Msa0979200-mRNA-1:three_prime_utr;Parent=Msa0979200-mRNA-1
chr6_4 three_prime_UTR 15758082 15758199 15758082 ID=Msa0979200-mRNA-1:three_prime_utr;Parent=Msa0979200-mRNA-1
chr6_4 three_prime_UTR 15756824 15757403 15756824 ID=Msa0979200-mRNA-1:three_prime_utr;Parent=Msa0979200-mRNA-1
Gene Sequence

>Msa0979200

ATGAAAATTGCTGAACTAGAACAAGTTAGCTCAAGACCTGATGTTGTTGTGGTTTGGGATGCTACTGCAGCAGATCCTAAGTTGCTGGTGTTTTTGAAATCTTATCGTAACACCGTACCTGTACCTAGGCATTGGTCACAAAAGAGAAAATTTTTGCAGGGGAGCGGCTTTGGCAATCACCAATCCTGGACTGGGAAATCTTGGTGGAGCTCGAATAGGAATAGTTGCGAAACCGTCTGCGAATTTGTTGCTGGAATACTCGCGACTTGGCTTAGTGGAGGTGTTGTTGTTCCACTTGCACTCAGCTATGCAGAAGTAGAGCTTCTCTATGTGATGAATAATTCGGTTCGTATATATGATGTAAATATGCTTCAAAATGAACCTTACCTAAGGAAGAAAAATGTTGGCGATGTGTCTGCTATATTGAGTACTGAAGATCATGGTGAATTAATGCAAAGCATTGCCAATAAAACCTCTTCTCAGTTTTTCCATATTCTGCCTGTTCCTAATAATTCCTCTGAGAAGAGTAGAAATGGACATTCACAAAATGGGGAAATTGATGCAGACAGAATTTTCCTGAAAAATGTCGAAAGATCAAGTGAAGATCCAGCACTGATTTTGTACACTAACGGGACAACAGTTAAAAACAAACAGATATTAGATTGTATGCTGGTTGTTACTTCAAATTTTGCAGACAAATTGCCTTCTTCATTGGTCCTACAGTTGGAGGGCTTCTTAATGCAACATGTGGGAATATTACAACCAAATTGTTGTTGTCAAGTATTCTCTTTTAGGTTCCATCCTTTCAAACCTTCTTCTTGTGCTTGGAACTTCCCTGCTTTGTGGTGGCATTGCAATCCTTGGAGTGGAGCAAAAAAAAGGAAGCCTATTTCATTTTATTATATATTGATCAAGATTTTTCACTATAATGGGTCATTGTACTTCAAGGAGATGTTTGACAAGTTATACCAGGCTGATTGGAAACCAGAGTCACCAAGTCAAGGACCAAAACCAACCCAAGTTTCTACAAAAGCCTCTTCTGCCAACCCAACTGCACAAAAACCTGCTGCATATCGTCCACCACATGCTAAGACTGTAGCTGCTATTCAGGCAGAGGTTGAAACACCTATGATAAACAAGATTGCCGGTGGCGCAGCAGCACGTCCATTTGTAGCTCACCACAATGAACTTGACGTAAAGTTGTTCATGAGAATTGCTCCAGAACTTTATCTCAAGCAGCTGGTTGTTTGTGGGATGGAACATGTTTATGAAATTGGTAAACAATTTAGAAATGAGGATATAGACCTTACACATACTCCTGAGTTCACTACCTGTGATTTTTATATGGCTTATAATGACTACAACGACCTAATGGCGATAACACAGAAAATGTTGAGTGGTGAGAATTATTAA
Protein sequence

>Msa0979200

MKIAELEQVSSRPDVVVVWDATAADPKLLVFLKSYRNTVPVPRHWSQKRKFLQGSGFGNHQSWTGKSWWSSNRNSCETVCEFVAGILATWLSGGVVVPLALSYAEVELLYVMNNSVRIYDVNMLQNEPYLRKKNVGDVSAILSTEDHGELMQSIANKTSSQFFHILPVPNNSSEKSRNGHSQNGEIDADRIFLKNVERSSEDPALILYTNGTTVKNKQILDCMLVVTSNFADKLPSSLVLQLEGFLMQHVGILQPNCCCQVFSFRFHPFKPSSCAWNFPALWWHCNPWSGAKKRKPISFYYILIKIFHYNGSLYFKEMFDKLYQADWKPESPSQGPKPTQVSTKASSANPTAQKPAAYRPPHAKTVAAIQAEVETPMINKIAGGAAARPFVAHHNELDVKLFMRIAPELYLKQLVVCGMEHVYEIGKQFRNEDIDLTHTPEFTTCDFYMAYNDYNDLMAITQKMLSGENY*