AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1099680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1099680 MtrunA17_Chr4g0004091 72.500 120 12 1 80 199 126 224 1.68e-51 170
Msa1099680 MtrunA17_Chr4g0004831 63.333 120 23 1 80 199 121 219 3.51e-42 145
Msa1099680 MtrunA17_Chr2g0282041 94.545 55 3 0 1 55 147 201 5.81e-29 115
Msa1099680 MtrunA17_Chr4g0047751 87.273 55 7 0 1 55 158 212 6.73e-27 109
Msa1099680 MtrunA17_Chr7g0242351 92.188 64 5 0 199 262 129 192 2.24e-22 95.9
Msa1099680 MtrunA17_Chr4g0006841 85.714 63 9 0 200 262 2 64 1.39e-18 84.0
Msa1099680 MtrunA17_Chr5g0429881 73.438 64 17 0 199 262 123 186 2.02e-13 69.7
Msa1099680 MtrunA17_Chr2g0334171 60.345 58 23 0 199 256 131 188 2.03e-13 69.7
Msa1099680 MtrunA17_Chr3g0120501 55.714 70 27 1 199 268 122 187 4.64e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1099680 AT4G21660.3 81.250 64 12 0 1 64 163 226 2.33e-28 114
Msa1099680 AT4G21660.2 67.532 77 13 1 1 77 163 227 2.74e-27 110
Msa1099680 AT4G21660.1 90.741 54 5 0 1 54 163 216 2.88e-27 110
Msa1099680 AT2G38170.2 75.000 64 16 0 199 262 127 190 2.72e-23 98.2
Msa1099680 AT2G38170.1 75.000 64 16 0 199 262 127 190 1.13e-22 97.1
Msa1099680 AT2G38170.3 75.000 64 16 0 199 262 127 190 1.39e-22 97.1
Msa1099680 AT3G51860.2 73.438 64 17 0 199 262 127 190 1.97e-21 93.6
Msa1099680 AT3G51860.1 73.438 64 17 0 199 262 127 190 2.48e-21 93.2
Msa1099680 AT3G16170.1 43.966 116 44 1 80 195 141 235 7.64e-21 92.4
Msa1099680 AT5G01490.2 51.190 84 33 2 199 274 128 211 1.33e-16 79.7
Msa1099680 AT5G01490.1 51.190 84 33 2 199 274 128 211 1.33e-16 79.7
Msa1099680 AT1G55730.1 60.317 63 25 0 199 261 129 191 7.64e-15 74.3
Msa1099680 AT1G55730.2 60.317 63 25 0 199 261 129 191 7.64e-15 74.3
Msa1099680 AT3G13320.1 62.500 56 21 0 199 254 129 184 2.31e-14 73.2
Msa1099680 AT1G55720.2 57.143 63 27 0 199 261 140 202 1.52e-13 70.5
Msa1099680 AT1G55720.1 57.143 63 27 0 199 261 140 202 1.58e-13 70.5

Find 211 sgRNAs with CRISPR-Local

Find 464 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATTCATGTTTCAGGTTT+TGG 0.075248 7_3:-28546018 Msa1099680:three_prime_UTR
TAAGTCCTCACTACAAAATT+TGG 0.119205 7_3:+28544641 None:intergenic
ATAATGGCTATAACTTAAAT+AGG 0.168278 7_3:-28548436 Msa1099680:three_prime_UTR
ATCTCCAACATTCATGTTTC+AGG 0.170623 7_3:-28546024 Msa1099680:three_prime_UTR
CTTTCCATCACTACTATATT+TGG 0.194501 7_3:-28548293 Msa1099680:three_prime_UTR
GATGAGGATGGAAGGTTTAA+AGG 0.197412 7_3:-28545515 Msa1099680:three_prime_UTR
AGCAACTGCATTGTCTTTCT+TGG 0.198801 7_3:+28544465 None:intergenic
TTCAATAGGGAGATGTTTAA+TGG 0.206830 7_3:-28544739 Msa1099680:three_prime_UTR
TGAAGAAAGTTCTAAACTTT+TGG 0.209770 7_3:-28544246 Msa1099680:three_prime_UTR
ATGGAACATGTTTATGAAAT+TGG 0.220857 7_3:-28546964 Msa1099680:three_prime_UTR
GGGTGAGGATTGAAGAATTT+GGG 0.228037 7_3:+28551972 None:intergenic
AGAAATGGACATTCACAAAA+TGG 0.249033 7_3:-28549302 Msa1099680:CDS
TTCTTGCAGGGGAGCGGCTT+TGG 0.257739 7_3:-28550287 Msa1099680:intron
CATGTTGATTCTATGGAGTT+TGG 0.274376 7_3:+28551951 None:intergenic
AATACTTGACAACAACAATT+TGG 0.278361 7_3:+28548717 None:intergenic
TTTATTATTAATGTTGGTTC+TGG 0.280401 7_3:-28546205 Msa1099680:three_prime_UTR
GTAGAAACTTGGGTTGGTTT+TGG 0.284210 7_3:+28547653 None:intergenic
AATATATAATAAAATGAAAT+AGG 0.288228 7_3:+28548594 None:intergenic
AACAAATGCAAATTTAATTT+CGG 0.291040 7_3:+28544682 None:intergenic
GAGGCTGGTTCCAATTTGTT+AGG 0.292256 7_3:-28544365 Msa1099680:three_prime_UTR
TTACAGGAATAATGCTGATT+TGG 0.294830 7_3:-28546560 Msa1099680:intron
AACAAACCTCCATAAAATTA+AGG 0.312011 7_3:+28547201 None:intergenic
TGGGTGAGGATTGAAGAATT+TGG 0.313789 7_3:+28551971 None:intergenic
AAACAAGGAAGATTAGAGTT+AGG 0.320485 7_3:-28551750 Msa1099680:five_prime_UTR
TATTAGGAACAGGCAGAATA+TGG 0.324406 7_3:+28549342 None:intergenic
CTGATGTCACCTAACTTACT+TGG 0.325309 7_3:+28547827 None:intergenic
GGTGATTGTCCCTAACAAAT+TGG 0.330595 7_3:+28544355 None:intergenic
GAGTTTGCATGTTGATTCTA+TGG 0.331195 7_3:+28551944 None:intergenic
TACAGTGTTGTTTGTGGAGT+TGG 0.334555 7_3:-28544289 Msa1099680:three_prime_UTR
CTCTTCTCAGAGGAATTATT+AGG 0.335182 7_3:+28549326 None:intergenic
ATGTTAAGAGCTTACGCTTT+GGG 0.338436 7_3:+28545457 None:intergenic
TTTCAAGTCTGGTAATAGTA+TGG 0.340976 7_3:-28548397 Msa1099680:three_prime_UTR
GGCACTGAATATGATTTATC+AGG 0.345491 7_3:-28551788 Msa1099680:five_prime_UTR
GAGTTTGGAGGGAGGTTCTA+AGG 0.346039 7_3:-28544491 Msa1099680:three_prime_UTR
GATGGAAGGTTTAAAGGCTT+TGG 0.349857 7_3:-28545509 Msa1099680:three_prime_UTR
TCCATGAAGATGTACCTTGC+AGG 0.355379 7_3:+28546491 None:intergenic
CTCAAGCAGCTGGTTGTTTG+TGG 0.355654 7_3:-28546988 Msa1099680:three_prime_UTR
GACATGCTGTTATTCGATTT+AGG 0.356277 7_3:-28544321 Msa1099680:three_prime_UTR
ATGCTATTCAGTATAAAATA+TGG 0.356926 7_3:-28548463 Msa1099680:three_prime_UTR
GAGTGTTGTCTTCATTCAAT+AGG 0.362606 7_3:-28544753 Msa1099680:three_prime_UTR
ATGAATCAGAAAACATGTTA+TGG 0.362760 7_3:-28548090 Msa1099680:three_prime_UTR
TAAGACTGTAGCTGCTATTC+AGG 0.365878 7_3:-28547570 Msa1099680:three_prime_UTR
AACAAGGAAGATTAGAGTTA+GGG 0.366624 7_3:-28551749 Msa1099680:five_prime_UTR
AAAATCAAATATCATGCAAA+TGG 0.367440 7_3:-28546712 Msa1099680:three_prime_UTR
TAAATAGGGTGCAGACTTGA+TGG 0.369245 7_3:-28548421 Msa1099680:three_prime_UTR
TCAAACCTTCTTCTTGTGCT+TGG 0.370945 7_3:-28548674 Msa1099680:CDS
ATTCGCGAAGATAGCGAATA+AGG 0.375444 7_3:+28548247 None:intergenic
CCGAGAGAGACATGGGAAGA+AGG 0.379900 7_3:+28552013 None:intergenic
CAACAAACTCTCCGCAATCT+TGG 0.379939 7_3:+28545555 None:intergenic
GAAATGGACATTCACAAAAT+GGG 0.380131 7_3:-28549301 Msa1099680:CDS
CTTGGAACTTCCCTGCTTTG+TGG 0.383269 7_3:-28548656 Msa1099680:CDS
CGAGAGAGACATGGGAAGAA+GGG 0.384593 7_3:+28552014 None:intergenic
AAGTCCTCACTACAAAATTT+GGG 0.385657 7_3:+28544642 None:intergenic
TATAAAATATGGTCAAATAA+TGG 0.386723 7_3:-28548452 Msa1099680:three_prime_UTR
AGAATTGTTAGAAATGATTC+AGG 0.387877 7_3:-28545714 Msa1099680:intron
TCCTCTGAGAAGAGTAGAAA+TGG 0.388853 7_3:-28549317 Msa1099680:CDS
ACAGCATGTCGCCCTCTTGT+AGG 0.389300 7_3:+28544334 None:intergenic
ATGTTGATTCTATGGAGTTT+GGG 0.389627 7_3:+28551952 None:intergenic
CATTCATAATATTATTCATA+AGG 0.396552 7_3:+28544613 None:intergenic
TGCAGCAGATCCTAAGTTGC+TGG 0.399151 7_3:-28550522 Msa1099680:CDS
TAAACTATTTGCAGACTGAT+TGG 0.400173 7_3:-28547862 Msa1099680:intron
GCCTGCAAGGTACATCTTCA+TGG 0.400385 7_3:-28546492 Msa1099680:three_prime_UTR
CCGGCAATCTTGTTTATCAT+AGG 0.401245 7_3:+28547093 None:intergenic
CAGTTGCTTGATGTGCTTAC+CGG 0.404409 7_3:-28544450 Msa1099680:three_prime_UTR
CCAGAGTCACCAAGTAAGTT+AGG 0.405472 7_3:-28547836 Msa1099680:three_prime_UTR
TCTCTATGTGATGAATAATT+CGG 0.408368 7_3:-28549692 Msa1099680:CDS
TCCTCCTACAGTGTTGTTTG+TGG 0.411414 7_3:-28544295 Msa1099680:three_prime_UTR
TCAGAGGAATTATTAGGAAC+AGG 0.412601 7_3:+28549332 None:intergenic
AAATCAAATATCATGCAAAT+GGG 0.412981 7_3:-28546711 Msa1099680:three_prime_UTR
GATGAATATGACCTACATTC+AGG 0.413598 7_3:-28545883 Msa1099680:three_prime_UTR
TAGACTTCACTCCACCCTTC+AGG 0.413847 7_3:-28546666 Msa1099680:intron
ACCGTCTGCGAATTTGTTGC+TGG 0.417231 7_3:-28549784 Msa1099680:CDS
GAATGCATTTGTAGTTTCTT+CGG 0.420415 7_3:-28548228 Msa1099680:three_prime_UTR
GGAAGATTAGAGTTAGGGTT+TGG 0.421891 7_3:-28551744 Msa1099680:five_prime_UTR
CATTGCACATGTTCTGAGTA+TGG 0.431001 7_3:-28545776 Msa1099680:three_prime_UTR
ATAAACTTTATTATTAATGT+TGG 0.431504 7_3:-28546211 Msa1099680:three_prime_UTR
ATTGAAATCCAGGGAAATCT+TGG 0.431539 7_3:-28549834 Msa1099680:intron
TGGACGTGCTGCTGCGCCAC+CGG 0.434564 7_3:+28547074 None:intergenic
CCTAACTTACTTGGTGACTC+TGG 0.436811 7_3:+28547836 None:intergenic
TGAATCAGAAAACATGTTAT+GGG 0.441559 7_3:-28548089 Msa1099680:three_prime_UTR
TGCAGTTGGGTTGGCAGAAG+AGG 0.444560 7_3:+28547625 None:intergenic
GGAGTGAAGTCTATTTCAAT+AGG 0.446836 7_3:+28546676 None:intergenic
TAATGGCTATAACTTAAATA+GGG 0.453250 7_3:-28548435 Msa1099680:three_prime_UTR
TAATGACTACAACGACCTAA+TGG 0.455750 7_3:-28546866 Msa1099680:three_prime_UTR
GTCAGTGAGGTTAGCGTGGA+TGG 0.456723 7_3:-28548516 Msa1099680:three_prime_UTR
TAGGTCATATTCATCAGAAA+AGG 0.460102 7_3:+28545891 None:intergenic
TTCAAGCAATATCATTTCTA+CGG 0.466633 7_3:+28544265 None:intergenic
TAATGGGTCATTGTACTTCA+AGG 0.471047 7_3:-28547968 Msa1099680:three_prime_UTR
GCTTTGGCAATCACCAATCC+TGG 0.472204 7_3:-28550271 Msa1099680:CDS
CCGAACTTGTGCATTCACTT+AGG 0.473843 7_3:+28546149 None:intergenic
TCAAGCAGCTGGTTGTTTGT+GGG 0.474857 7_3:-28546987 Msa1099680:three_prime_UTR
AAATAATTCAAGAACCAAAC+AGG 0.476325 7_3:+28548350 None:intergenic
AGTGTTGTCTTCATTCAATA+GGG 0.477044 7_3:-28544752 Msa1099680:three_prime_UTR
TGGTAAACAATTTAGAAATG+AGG 0.479474 7_3:-28546944 Msa1099680:three_prime_UTR
CCTATGATAAACAAGATTGC+CGG 0.480935 7_3:-28547093 Msa1099680:three_prime_UTR
TGCTCAGCTGCAATAATTGA+TGG 0.481250 7_3:-28551720 Msa1099680:five_prime_UTR
AGGCTGGTTCCAATTTGTTA+GGG 0.481872 7_3:-28544364 Msa1099680:three_prime_UTR
ATACTCGCGACTTGGCTTAG+TGG 0.485895 7_3:-28549760 Msa1099680:CDS
TTCTGGTGTGAGGAAAAGAA+TGG 0.487616 7_3:+28552049 None:intergenic
AAGTTCCAAGCACAAGAAGA+AGG 0.489149 7_3:+28548669 None:intergenic
GAGAGAGAGGGACACGTTCA+AGG 0.489746 7_3:+28551861 None:intergenic
GAAAATTTCTTCCAAGATTG+CGG 0.490605 7_3:-28545566 Msa1099680:three_prime_UTR
TTGCAATGCCACCACAAAGC+AGG 0.490757 7_3:+28548645 None:intergenic
AATCTTGGTGGAGCTCGAAT+AGG 0.490823 7_3:-28549819 Msa1099680:CDS
AAGAAGAAGGTTTGAAAGGA+TGG 0.493952 7_3:+28548682 None:intergenic
TTGCTGGAATACTCGCGACT+TGG 0.497164 7_3:-28549768 Msa1099680:CDS
CCTAAGTGAATGCACAAGTT+CGG 0.499139 7_3:-28546149 Msa1099680:three_prime_UTR
TTCCAAACACCTACCAGTCC+AGG 0.501998 7_3:+28550253 None:intergenic
TGAGCATTGGAGAAACGAAA+TGG 0.505403 7_3:-28544592 Msa1099680:three_prime_UTR
ACTCCTACCACAACAACATC+AGG 0.506236 7_3:+28550649 None:intergenic
ATGTGGTTCTTGCAGGGGAG+CGG 0.508751 7_3:-28550293 Msa1099680:intron
TAAACCAAATATAGTAGTGA+TGG 0.508915 7_3:+28548289 None:intergenic
AGGGACACGTTCAAGGGAAG+AGG 0.509430 7_3:+28551868 None:intergenic
GATTCTATGGAGTTTGGGTG+AGG 0.512401 7_3:+28551957 None:intergenic
GATGTTTGACAAGTTATAGC+AGG 0.512643 7_3:-28547944 Msa1099680:intron
AGCTGCTTGAGATAAAGTTC+TGG 0.514028 7_3:+28547000 None:intergenic
TATATCAACCTCTAGATGAC+AGG 0.517047 7_3:-28546063 Msa1099680:three_prime_UTR
TCATTGTGGTGAGCTACAAA+TGG 0.517376 7_3:+28547054 None:intergenic
CCTTCTTCCCATGTCTCTCT+CGG 0.518393 7_3:-28552013 Msa1099680:five_prime_UTR
TGTGGTGGCATTGCAAACCT+TGG 0.524276 7_3:-28548638 Msa1099680:CDS
GTTCAAGGGAAGAGGATAAG+AGG 0.531277 7_3:+28551876 None:intergenic
GGAACTTCCCTGCTTTGTGG+TGG 0.531729 7_3:-28548653 Msa1099680:CDS
TCTATTCACGAACTCACAAA+AGG 0.531883 7_3:-28546742 Msa1099680:three_prime_UTR
TGAACTCAGGAGTATGTGTA+AGG 0.534167 7_3:+28546914 None:intergenic
TTCAATCATCACACTTGTGA+TGG 0.534853 7_3:-28548177 Msa1099680:three_prime_UTR
AGAACTTTATCTCAAGCAGC+TGG 0.534987 7_3:-28546998 Msa1099680:three_prime_UTR
ATGTGATGAATAATTCGGTT+CGG 0.538369 7_3:-28549687 Msa1099680:intron
AACACCTACCAGTCCAGGAT+TGG 0.539428 7_3:+28550258 None:intergenic
GAGAGAGACATGGGAAGAAG+GGG 0.539754 7_3:+28552015 None:intergenic
AAAACCTGAAACATGAATGT+TGG 0.543763 7_3:+28546020 None:intergenic
TGTGACCAATGCCTAGGTAC+AGG 0.544976 7_3:+28550470 None:intergenic
GTTCTGGCTTTAAGATGTTG+TGG 0.544981 7_3:-28546189 Msa1099680:three_prime_UTR
ATAATGCTGATTTGGTTATG+TGG 0.545874 7_3:-28546552 Msa1099680:three_prime_UTR
GATTGCTTGATGTGTGATCA+AGG 0.545966 7_3:-28545752 Msa1099680:three_prime_UTR
TTCAAAATGAACCTTACCTA+AGG 0.546225 7_3:-28549460 Msa1099680:CDS
TGTTACGCTCAGCGGTAATG+AGG 0.546564 7_3:+28544409 None:intergenic
CCATAAAATTAAGGTCATCA+AGG 0.551178 7_3:+28547210 None:intergenic
AGAGAGAGGGACACGTTCAA+GGG 0.553027 7_3:+28551862 None:intergenic
TCAAACAAGAACCTCTTGCA+TGG 0.554165 7_3:-28551810 Msa1099680:five_prime_UTR
GGCAATCACCAATCCTGGAC+TGG 0.554841 7_3:-28550266 Msa1099680:intron
TGAGAGGGCCGAGAGAGACA+TGG 0.554946 7_3:+28552005 None:intergenic
TTAGAACCTCCCTCCAAACT+CGG 0.557286 7_3:+28544493 None:intergenic
GAGAGGGCCGAGAGAGACAT+GGG 0.558774 7_3:+28552006 None:intergenic
TCTGCATAGCTGAGTGCAAG+TGG 0.559278 7_3:+28549724 None:intergenic
GATGTTGTGGAAAGCGGTGA+AGG 0.561562 7_3:-28546176 Msa1099680:three_prime_UTR
TGCAATGCCACCACAAAGCA+GGG 0.561820 7_3:+28548646 None:intergenic
TCCACAAACAACACTGTAGG+AGG 0.562703 7_3:+28544294 None:intergenic
TCTCTATTATTACAGTTGGA+GGG 0.566642 7_3:-28548805 Msa1099680:intron
GCACAAGAAGAAGGTTTGAA+AGG 0.568007 7_3:+28548678 None:intergenic
GAAATCCAGGGAAATCTTGG+TGG 0.568219 7_3:-28549831 Msa1099680:intron
AAATCACAGGTAGTGAACTC+AGG 0.569165 7_3:+28546901 None:intergenic
TTGCTTCAGATGAGGATGGA+AGG 0.572189 7_3:-28545523 Msa1099680:three_prime_UTR
CTCAAGACCTGATGTTGTTG+TGG 0.574621 7_3:-28550656 Msa1099680:intron
TTTGGGGCTAAGAGAGTGAG+AGG 0.574621 7_3:+28551989 None:intergenic
TGTGGTGGACGATATGCAGC+AGG 0.576118 7_3:+28547596 None:intergenic
ATAATATTATGAATGAGCAT+TGG 0.576428 7_3:-28544605 Msa1099680:three_prime_UTR
TCCAGCAACAAATTCGCAGA+CGG 0.581642 7_3:+28549783 None:intergenic
GGCACTTGCAGGAACTGCAT+TGG 0.583491 7_3:-28544777 Msa1099680:intron
CGTCTTGCTTCAGATGAGGA+TGG 0.585403 7_3:-28545527 Msa1099680:three_prime_UTR
GGTGAGGATTGAAGAATTTG+GGG 0.586947 7_3:+28551973 None:intergenic
TTGTGATTATTCCATCATGA+GGG 0.591225 7_3:+28551912 None:intergenic
ATATTCAGTGCCCATGCAAG+AGG 0.591294 7_3:+28551799 None:intergenic
CTGAATATGATTTATCAGGA+TGG 0.591889 7_3:-28551784 Msa1099680:five_prime_UTR
TTCAGCTTTGTTACGCTCAG+CGG 0.592093 7_3:+28544401 None:intergenic
GCAGCTGGTTGTTTGTGGGA+TGG 0.593960 7_3:-28546983 Msa1099680:three_prime_UTR
GGGCTTCTTAATGCAACATG+TGG 0.594840 7_3:-28548785 Msa1099680:CDS
TTTGTGATTATTCCATCATG+AGG 0.596174 7_3:+28551911 None:intergenic
CAAGGTGAAAATTGAGAGAG+AGG 0.597039 7_3:+28551848 None:intergenic
TTGGAACCAGCCTCCTCCCA+AGG 0.597641 7_3:+28544374 None:intergenic
CTAATTTCTCAAAGCCTGCA+AGG 0.598822 7_3:-28546505 Msa1099680:three_prime_UTR
TGTAGCTGCTATTCAGGCAG+AGG 0.598925 7_3:-28547564 Msa1099680:intron
TCACAAATAGACCTGAATGT+AGG 0.603433 7_3:+28545872 None:intergenic
GCTCAGCTGCAATAATTGAT+GGG 0.603788 7_3:-28551719 Msa1099680:intron
AAATGGACATTCACAAAATG+GGG 0.610443 7_3:-28549300 Msa1099680:CDS
GCGGCAATCGTATTCATGAC+CGG 0.611851 7_3:+28544431 None:intergenic
CAAACAAGAACCTCTTGCAT+GGG 0.612348 7_3:-28551809 Msa1099680:five_prime_UTR
TCCATTTCTACTCTTCTCAG+AGG 0.617031 7_3:+28549316 None:intergenic
CCGTACCTGTACCTAGGCAT+TGG 0.618440 7_3:-28550475 Msa1099680:CDS
TTATCTCAATGTGTTGCTAG+AGG 0.618737 7_3:-28545988 Msa1099680:three_prime_UTR
AATCAAATATCATGCAAATG+GGG 0.623882 7_3:-28546710 Msa1099680:three_prime_UTR
GGCTTCTTAATGCAACATGT+GGG 0.624011 7_3:-28548784 Msa1099680:CDS
ACTTTACGTCAAGTTCATTG+TGG 0.629848 7_3:+28547040 None:intergenic
TACGCTCAGCGGTAATGAGG+CGG 0.632249 7_3:+28544412 None:intergenic
TGATGTGTGATCAAGGCCCA+TGG 0.637261 7_3:-28545745 Msa1099680:three_prime_UTR
TTCAAACCGAGTTTGGAGGG+AGG 0.637516 7_3:-28544499 Msa1099680:three_prime_UTR
AACACAAACCTGTCATCTAG+AGG 0.639321 7_3:+28546055 None:intergenic
CTTTAAGATGTTGTGGAAAG+CGG 0.640083 7_3:-28546182 Msa1099680:three_prime_UTR
GCTACAGTCTTAGCATGTGG+TGG 0.640695 7_3:+28547581 None:intergenic
TTATACTGAATAGCATGTCG+CGG 0.646983 7_3:+28548470 None:intergenic
TGATAGCAATTATTATCCTG+AGG 0.652576 7_3:-28546456 Msa1099680:intron
AACTCCACAAACAACACTGT+AGG 0.655204 7_3:+28544291 None:intergenic
CTCGCGACTTGGCTTAGTGG+AGG 0.656754 7_3:-28549757 Msa1099680:CDS
TTGAATGCACTGCACCTGAA+GGG 0.657190 7_3:+28546652 None:intergenic
CCAATGCCTAGGTACAGGTA+CGG 0.657807 7_3:+28550475 None:intergenic
TAGGGACAATCACCTACAAG+AGG 0.660602 7_3:-28544346 Msa1099680:three_prime_UTR
GTAACACCGTACCTGTACCT+AGG 0.660864 7_3:-28550481 Msa1099680:CDS
TGGCATTGCAAACCTTGGAG+TGG 0.662345 7_3:-28548633 Msa1099680:CDS
AGAGAGACATGGGAAGAAGG+GGG 0.664927 7_3:+28552016 None:intergenic
AAGGTGAAAATTGAGAGAGA+GGG 0.672652 7_3:+28551849 None:intergenic
GCAGCTACAGTCTTAGCATG+TGG 0.674519 7_3:+28547578 None:intergenic
AATGCACTGCACCTGAAGGG+TGG 0.675869 7_3:+28546655 None:intergenic
ATGATAAACAAGATTGCCGG+TGG 0.677791 7_3:-28547090 Msa1099680:three_prime_UTR
TGCTAGAGGCTATTGATCCG+AGG 0.679387 7_3:-28545974 Msa1099680:three_prime_UTR
ATATTGAGTACTGAAGATCA+TGG 0.680453 7_3:-28549410 Msa1099680:CDS
TGTACGTCTTGCTTCAGATG+AGG 0.681852 7_3:-28545531 Msa1099680:three_prime_UTR
TGTTGAGTTTGCAACTGCAG+TGG 0.689687 7_3:-28545483 Msa1099680:three_prime_UTR
AGGGACAATCACCTACAAGA+GGG 0.691250 7_3:-28544345 Msa1099680:three_prime_UTR
ATTGTTTGCGAATGTCAGTG+AGG 0.691265 7_3:-28548529 Msa1099680:three_prime_UTR
ATAACACAGAAAATGTTGAG+TGG 0.702673 7_3:-28546841 Msa1099680:intron
GAATGTCAGTGAGGTTAGCG+TGG 0.721444 7_3:-28548520 Msa1099680:three_prime_UTR
TTGGGGCTAAGAGAGTGAGA+GGG 0.745435 7_3:+28551990 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTAATTATGTATTTT+TGG - chr7_3:28544700-28544719 Msa1099680:three_prime_UTR 10.0%
!! AAAAAGATGTATAATAAATA+GGG - chr7_3:28545127-28545146 Msa1099680:intron 10.0%
!! ATTTGAAAATTTCATATAAA+AGG + chr7_3:28546717-28546736 None:intergenic 10.0%
!! TATAAAATGAAAAATAACAA+AGG + chr7_3:28548937-28548956 None:intergenic 10.0%
!!! TTATAAAATCTATTGTATTT+TGG - chr7_3:28549649-28549668 Msa1099680:intron 10.0%
!! ATAAACTTTATTATTAATGT+TGG - chr7_3:28550045-28550064 Msa1099680:intron 10.0%
!! AACATACTTACAAAAAAAAA+AGG + chr7_3:28544804-28544823 None:intergenic 15.0%
!!! TTTTTTTGTAAGTATGTTTT+TGG - chr7_3:28544806-28544825 Msa1099680:intron 15.0%
!! GAAAAAGATGTATAATAAAT+AGG - chr7_3:28545126-28545145 Msa1099680:intron 15.0%
!! AAAAGATGTATAATAAATAG+GGG - chr7_3:28545128-28545147 Msa1099680:intron 15.0%
!! AAAGAAATAATTAATGTAGT+TGG - chr7_3:28545160-28545179 Msa1099680:intron 15.0%
!! ACAAAAAAAAATTCTCAAAA+GGG - chr7_3:28545211-28545230 Msa1099680:intron 15.0%
!!! ATTATCTTTGTTATATTGAT+TGG - chr7_3:28546054-28546073 Msa1099680:three_prime_UTR 15.0%
!!! TTATCTTTGTTATATTGATT+GGG - chr7_3:28546055-28546074 Msa1099680:three_prime_UTR 15.0%
!!! TCATTGATTAATGTTTAATT+TGG - chr7_3:28547381-28547400 Msa1099680:intron 15.0%
!! TATAAAATATGGTCAAATAA+TGG - chr7_3:28547804-28547823 Msa1099680:three_prime_UTR 15.0%
!! AATAAAATCATTTCTTACAT+AGG - chr7_3:28549021-28549040 Msa1099680:intron 15.0%
!! CTTAATAAGATAAAATCATA+TGG + chr7_3:28549493-28549512 None:intergenic 15.0%
!!! CATATGATTTTATCTTATTA+AGG - chr7_3:28549491-28549510 Msa1099680:intron 15.0%
!!! ATTTGTATTTTTATTGTTAC+AGG - chr7_3:28549680-28549699 Msa1099680:intron 15.0%
!!! AATTTTAATCAACTTCAATA+GGG + chr7_3:28550001-28550020 None:intergenic 15.0%
!!! AACAAATGCAAATTTAATTT+CGG + chr7_3:28551577-28551596 None:intergenic 15.0%
!! CATTCATAATATTATTCATA+AGG + chr7_3:28551646-28551665 None:intergenic 15.0%
!! CTCATTCTTATTCTTAATTT+GGG + chr7_3:28544771-28544790 None:intergenic 20.0%
!! ACTCATTCTTATTCTTAATT+TGG + chr7_3:28544772-28544791 None:intergenic 20.0%
!!! TTTCCGTTATTTTTTCAAAA+GGG + chr7_3:28544990-28545009 None:intergenic 20.0%
!!! ATTTCCGTTATTTTTTCAAA+AGG + chr7_3:28544991-28545010 None:intergenic 20.0%
!! GACAAAAAAAAATTCTCAAA+AGG - chr7_3:28545210-28545229 Msa1099680:intron 20.0%
!! TAACTCAAACAAATAATCAA+AGG + chr7_3:28545393-28545412 None:intergenic 20.0%
!!! AGAATTAGTTTCAAATTGTT+GGG - chr7_3:28545642-28545661 Msa1099680:intron 20.0%
!! ATCTTATATATGTATGTATG+TGG - chr7_3:28545946-28545965 Msa1099680:three_prime_UTR 20.0%
!!! ATTTGTTTGGTGTTTTTTTT+TGG - chr7_3:28546131-28546150 Msa1099680:three_prime_UTR 20.0%
!! ATCAATCTGCTAAAAATTTA+AGG - chr7_3:28546295-28546314 Msa1099680:intron 20.0%
!! TTGAATACTTAGTATATTGT+TGG - chr7_3:28546322-28546341 Msa1099680:intron 20.0%
!! TGAATACTTAGTATATTGTT+GGG - chr7_3:28546323-28546342 Msa1099680:intron 20.0%
!! TCGTTTAGTCAAATTATTTA+TGG - chr7_3:28546398-28546417 Msa1099680:intron 20.0%
!!! ATATGAAATTTTCAAATAGC+TGG - chr7_3:28546720-28546739 Msa1099680:three_prime_UTR 20.0%
!!! ATCATATATACTTTTCACAA+AGG + chr7_3:28546766-28546785 None:intergenic 20.0%
!!! ACATTTTCAGCTTTTAAAAA+TGG - chr7_3:28547035-28547054 Msa1099680:three_prime_UTR 20.0%
!! ATGCTATTCAGTATAAAATA+TGG - chr7_3:28547793-28547812 Msa1099680:three_prime_UTR 20.0%
!! ATAATGGCTATAACTTAAAT+AGG - chr7_3:28547820-28547839 Msa1099680:three_prime_UTR 20.0%
!! TAATGGCTATAACTTAAATA+GGG - chr7_3:28547821-28547840 Msa1099680:three_prime_UTR 20.0%
!! AGAAATGAGCAAATAAAAAA+AGG + chr7_3:28548141-28548160 None:intergenic 20.0%
!!! ATCAAGATTTTTCACTATAA+TGG - chr7_3:28548271-28548290 Msa1099680:three_prime_UTR 20.0%
!!! TCAAGATTTTTCACTATAAT+GGG - chr7_3:28548272-28548291 Msa1099680:three_prime_UTR 20.0%
!! AAGAAATAGTAGAATAAACA+TGG + chr7_3:28548517-28548536 None:intergenic 20.0%
!! AGAAACAATTAACAAATCAT+TGG + chr7_3:28548733-28548752 None:intergenic 20.0%
!! AAAATCAAATATCATGCAAA+TGG - chr7_3:28549544-28549563 Msa1099680:intron 20.0%
!! AAATCAAATATCATGCAAAT+GGG - chr7_3:28549545-28549564 Msa1099680:intron 20.0%
!!! GAATTTTAATCAACTTCAAT+AGG + chr7_3:28550002-28550021 None:intergenic 20.0%
!!! TTTATTATTAATGTTGGTTC+TGG - chr7_3:28550051-28550070 Msa1099680:intron 20.0%
!! TGAAAAAATTCAGTTAGATA+AGG + chr7_3:28550668-28550687 None:intergenic 20.0%
!!! TTAACATTTTTTCAACTTTG+TGG - chr7_3:28550815-28550834 Msa1099680:intron 20.0%
!!! AGGTTATATGATCTTTTAAT+AGG - chr7_3:28551150-28551169 Msa1099680:intron 20.0%
!!! GGTTATATGATCTTTTAATA+GGG - chr7_3:28551151-28551170 Msa1099680:intron 20.0%
!!! GTTATATGATCTTTTAATAG+GGG - chr7_3:28551152-28551171 Msa1099680:intron 20.0%
!!! AAAAATAATAAAGCACCAAA+TGG + chr7_3:28551210-28551229 None:intergenic 20.0%
!! ATAATATTATGAATGAGCAT+TGG - chr7_3:28551651-28551670 Msa1099680:intron 20.0%
!!! AAATTTTTTTTTCTGGTGTG+AGG + chr7_3:28544220-28544239 None:intergenic 25.0%
! TGAATAAAAATGAAAACCCA+AGG + chr7_3:28544429-28544448 None:intergenic 25.0%
!!! AAGTTGTTTAAGTTGTTGTA+AGG - chr7_3:28544651-28544670 Msa1099680:three_prime_UTR 25.0%
! CAATTATACAAACATCTTGT+GGG + chr7_3:28544910-28544929 None:intergenic 25.0%
! TTGTATAATTGCCTGAATTA+AGG - chr7_3:28544919-28544938 Msa1099680:intron 25.0%
!! AATAACGGAAATTAAGATAG+TGG - chr7_3:28544999-28545018 Msa1099680:intron 25.0%
!!! AATTTTATCCTTTAAGAGAG+AGG - chr7_3:28545063-28545082 Msa1099680:intron 25.0%
!! TCAAAAGGGTCTTATAATTA+GGG - chr7_3:28545225-28545244 Msa1099680:intron 25.0%
!! TTAACTAATCTTTTGAGCTT+TGG - chr7_3:28545319-28545338 Msa1099680:intron 25.0%
! AATAGTTATTTACGATCACA+AGG + chr7_3:28545419-28545438 None:intergenic 25.0%
! CAATGAAATCAGGAAAATAA+TGG + chr7_3:28545495-28545514 None:intergenic 25.0%
! AAAAAAGATGCAATGAAATC+AGG + chr7_3:28545505-28545524 None:intergenic 25.0%
!! CAGAATTAGTTTCAAATTGT+TGG - chr7_3:28545641-28545660 Msa1099680:intron 25.0%
! ATGAAACATCATTTGCATAA+CGG + chr7_3:28545686-28545705 None:intergenic 25.0%
!! TGTTTCATAATTTCGTTTTC+AGG - chr7_3:28545698-28545717 Msa1099680:intron 25.0%
!!! ATAATTTCGTTTTCAGGTTT+GGG - chr7_3:28545704-28545723 Msa1099680:intron 25.0%
!! ACAAAAGAGAAAATTTTTGC+AGG - chr7_3:28545806-28545825 Msa1099680:three_prime_UTR 25.0%
! CCTATAATAACTATCAAGTT+AGG + chr7_3:28545843-28545862 None:intergenic 25.0%
!! CCTAACTTGATAGTTATTAT+AGG - chr7_3:28545840-28545859 Msa1099680:three_prime_UTR 25.0%
! AATAAAAGAGAAACAACTCA+AGG + chr7_3:28546037-28546056 None:intergenic 25.0%
!!! TAATGCACAAGATATTTTTG+TGG - chr7_3:28546166-28546185 Msa1099680:three_prime_UTR 25.0%
!! TAGCAATTTTTCTCTGAATT+TGG - chr7_3:28546203-28546222 Msa1099680:three_prime_UTR 25.0%
! TCTCTATGTGATGAATAATT+CGG - chr7_3:28546564-28546583 Msa1099680:intron 25.0%
! ACGTTAAACAGATAAAAGAA+AGG + chr7_3:28546633-28546652 None:intergenic 25.0%
!! ATTTTCCATTGACATTATCT+TGG - chr7_3:28546689-28546708 Msa1099680:three_prime_UTR 25.0%
!!! CATTTGTTTTTCATATCCTT+TGG - chr7_3:28547107-28547126 Msa1099680:intron 25.0%
!! TTTTTCATATCCTTTGGATT+AGG - chr7_3:28547113-28547132 Msa1099680:intron 25.0%
! NNNNNNNNCACCTAATCCAA+AGG + chr7_3:28547126-28547145 None:intergenic 25.0%
!! GAACAATTTTATATACCTGT+AGG + chr7_3:28547356-28547375 None:intergenic 25.0%
! GTATTCTCTATTATTACAGT+TGG - chr7_3:28547447-28547466 Msa1099680:intron 25.0%
! AATACTTGACAACAACAATT+TGG + chr7_3:28547542-28547561 None:intergenic 25.0%
! AAATAATTCAAGAACCAAAC+AGG + chr7_3:28547909-28547928 None:intergenic 25.0%
! TAAACCAAATATAGTAGTGA+TGG + chr7_3:28547970-28547989 None:intergenic 25.0%
!! TAAAAAAAGGAATGTTTTCG+TGG + chr7_3:28548128-28548147 None:intergenic 25.0%
! ATGAATCAGAAAACATGTTA+TGG - chr7_3:28548166-28548185 Msa1099680:three_prime_UTR 25.0%
! TGAATCAGAAAACATGTTAT+GGG - chr7_3:28548167-28548186 Msa1099680:three_prime_UTR 25.0%
! AATGAAAAATGCTTTCTTAG+TGG + chr7_3:28548225-28548244 None:intergenic 25.0%
!! TTTTGTTCTTTTTCCATTGA+AGG - chr7_3:28548248-28548267 Msa1099680:three_prime_UTR 25.0%
!!! GATTTTATTTCTCGATTATG+TGG + chr7_3:28549010-28549029 None:intergenic 25.0%
! AACAAACCTCCATAAAATTA+AGG + chr7_3:28549058-28549077 None:intergenic 25.0%
! ATGGAACATGTTTATGAAAT+TGG - chr7_3:28549292-28549311 Msa1099680:CDS 25.0%
! TGGTAAACAATTTAGAAATG+AGG - chr7_3:28549312-28549331 Msa1099680:CDS 25.0%
! ATAAGCCATATAAAAATCAC+AGG + chr7_3:28549371-28549390 None:intergenic 25.0%
! AATCAAATATCATGCAAATG+GGG - chr7_3:28549546-28549565 Msa1099680:intron 25.0%
!!! GTGGTTTTATTATTCTTCTA+TGG - chr7_3:28549723-28549742 Msa1099680:CDS 25.0%
!! ACAATTCTGAATTTTTCCAT+GGG + chr7_3:28550530-28550549 None:intergenic 25.0%
!! AACAATTCTGAATTTTTCCA+TGG + chr7_3:28550531-28550550 None:intergenic 25.0%
! AGAATTGTTAGAAATGATTC+AGG - chr7_3:28550542-28550561 Msa1099680:intron 25.0%
! AAGTAGAAAATTAGAGAGTA+AGG - chr7_3:28550638-28550657 Msa1099680:intron 25.0%
! AGTAGAAAATTAGAGAGTAA+GGG - chr7_3:28550639-28550658 Msa1099680:intron 25.0%
!! GGGAAGTATAAATCAATATT+AGG - chr7_3:28551130-28551149 Msa1099680:intron 25.0%
!! AACAAAAAGCATAAAATTCC+TGG + chr7_3:28551365-28551384 None:intergenic 25.0%
!!! TTTGGTATTTTGATAAGATC+TGG - chr7_3:28551408-28551427 Msa1099680:intron 25.0%
!! AAGTTGAAGAACAAAGTTTT+TGG + chr7_3:28551444-28551463 None:intergenic 25.0%
! TTCAAGCAATATCATTTCTA+CGG + chr7_3:28551994-28552013 None:intergenic 25.0%
!!! TGAAGAAAGTTCTAAACTTT+TGG - chr7_3:28552010-28552029 Msa1099680:five_prime_UTR 25.0%
!!! AAGGGGGAAATTTTTTTTTC+TGG + chr7_3:28544227-28544246 None:intergenic 30.0%
!! ATGTTGATTCTATGGAGTTT+GGG + chr7_3:28544307-28544326 None:intergenic 30.0%
TTGTGATTATTCCATCATGA+GGG + chr7_3:28544347-28544366 None:intergenic 30.0%
TTTGTGATTATTCCATCATG+AGG + chr7_3:28544348-28544367 None:intergenic 30.0%
CTGAATATGATTTATCAGGA+TGG - chr7_3:28544472-28544491 Msa1099680:three_prime_UTR 30.0%
AAACAAGGAAGATTAGAGTT+AGG - chr7_3:28544506-28544525 Msa1099680:three_prime_UTR 30.0%
AACAAGGAAGATTAGAGTTA+GGG - chr7_3:28544507-28544526 Msa1099680:three_prime_UTR 30.0%
GCAATTATACAAACATCTTG+TGG + chr7_3:28544911-28544930 None:intergenic 30.0%
AATGTAGTTGGAAATAGCAA+AGG - chr7_3:28545172-28545191 Msa1099680:intron 30.0%
ATGTAGTTGGAAATAGCAAA+GGG - chr7_3:28545173-28545192 Msa1099680:intron 30.0%
! CTCAAAAGGGTCTTATAATT+AGG - chr7_3:28545224-28545243 Msa1099680:intron 30.0%
TAACACACTCACAATATGAA+AGG + chr7_3:28545281-28545300 None:intergenic 30.0%
ATTCACATATTCCTTAAGAG+AGG + chr7_3:28545354-28545373 None:intergenic 30.0%
!! CATATTCTGAAGTTTACATC+AGG - chr7_3:28545460-28545479 Msa1099680:intron 30.0%
!!! CATTGCATCTTTTTTTTTGC+AGG - chr7_3:28545510-28545529 Msa1099680:three_prime_UTR 30.0%
!!! CATAATTTCGTTTTCAGGTT+TGG - chr7_3:28545703-28545722 Msa1099680:intron 30.0%
TGAAAACGATGAAGTCAATA+AGG - chr7_3:28545920-28545939 Msa1099680:three_prime_UTR 30.0%
ATTGAGGAGAATAAAAGTTG+AGG - chr7_3:28546259-28546278 Msa1099680:intron 30.0%
! TATTTATGGCATTGAAATCC+AGG - chr7_3:28546412-28546431 Msa1099680:intron 30.0%
! ATTTATGGCATTGAAATCCA+GGG - chr7_3:28546413-28546432 Msa1099680:intron 30.0%
ATGTGATGAATAATTCGGTT+CGG - chr7_3:28546569-28546588 Msa1099680:intron 30.0%
CTTGTGAACATTAAGAATTC+AGG - chr7_3:28546657-28546676 Msa1099680:intron 30.0%
TTCAAAATGAACCTTACCTA+AGG - chr7_3:28546796-28546815 Msa1099680:intron 30.0%
! ACATTTTTCTTCCTTAGGTA+AGG + chr7_3:28546810-28546829 None:intergenic 30.0%
TACCTAAGGAAGAAAAATGT+TGG - chr7_3:28546810-28546829 Msa1099680:intron 30.0%
!! ATATTGAGTACTGAAGATCA+TGG - chr7_3:28546846-28546865 Msa1099680:three_prime_UTR 30.0%
!! AAACTGAGAAGAGGTTTTAT+TGG + chr7_3:28546892-28546911 None:intergenic 30.0%
AATATGGAAAAACTGAGAAG+AGG + chr7_3:28546901-28546920 None:intergenic 30.0%
AGAAATGGACATTCACAAAA+TGG - chr7_3:28546954-28546973 Msa1099680:three_prime_UTR 30.0%
GAAATGGACATTCACAAAAT+GGG - chr7_3:28546955-28546974 Msa1099680:three_prime_UTR 30.0%
AAATGGACATTCACAAAATG+GGG - chr7_3:28546956-28546975 Msa1099680:three_prime_UTR 30.0%
! TTGATCTTTCGACATTTTTC+AGG + chr7_3:28547004-28547023 None:intergenic 30.0%
ACAGATATTAGATTGTATGC+TGG - chr7_3:28547287-28547306 Msa1099680:intron 30.0%
TTCTCTATTATTACAGTTGG+AGG - chr7_3:28547450-28547469 Msa1099680:intron 30.0%
TCTCTATTATTACAGTTGGA+GGG - chr7_3:28547451-28547470 Msa1099680:intron 30.0%
! GTTGTCAAGTATTCTCTTTT+AGG - chr7_3:28547549-28547568 Msa1099680:intron 30.0%
! TTTCAAGTCTGGTAATAGTA+TGG - chr7_3:28547859-28547878 Msa1099680:intron 30.0%
!!! GCTAGATTAGTTTTTCATGT+TGG - chr7_3:28547881-28547900 Msa1099680:intron 30.0%
CTTTCCATCACTACTATATT+TGG - chr7_3:28547963-28547982 Msa1099680:three_prime_UTR 30.0%
GAATGCATTTGTAGTTTCTT+CGG - chr7_3:28548028-28548047 Msa1099680:three_prime_UTR 30.0%
TTCTTCGGAAAAACTAACAA+AGG - chr7_3:28548043-28548062 Msa1099680:three_prime_UTR 30.0%
GAAAAATCTTGATCCTTCAA+TGG + chr7_3:28548264-28548283 None:intergenic 30.0%
TAAACTATTTGCAGACTGAT+TGG - chr7_3:28548394-28548413 Msa1099680:three_prime_UTR 30.0%
CTTGAAGATTAAAAACCATC+AGG - chr7_3:28548484-28548503 Msa1099680:three_prime_UTR 30.0%
CCATAAAATTAAGGTCATCA+AGG + chr7_3:28549049-28549068 None:intergenic 30.0%
!! CCTTGATGACCTTAATTTTA+TGG - chr7_3:28549046-28549065 Msa1099680:intron 30.0%
! TGATGACCTTAATTTTATGG+AGG - chr7_3:28549049-28549068 Msa1099680:intron 30.0%
TGGAAGAAATTATAAGCAAC+TGG + chr7_3:28549102-28549121 None:intergenic 30.0%
AAGTAGTGAAAAGAATAGGT+AGG + chr7_3:28549130-28549149 None:intergenic 30.0%
CTGAAAGTAGTGAAAAGAAT+AGG + chr7_3:28549134-28549153 None:intergenic 30.0%
! CTATTCTTTTCACTACTTTC+AGG - chr7_3:28549132-28549151 Msa1099680:intron 30.0%
! CACTACCTGTGATTTTTATA+TGG - chr7_3:28549363-28549382 Msa1099680:CDS 30.0%
ATAACACAGAAAATGTTGAG+TGG - chr7_3:28549415-28549434 Msa1099680:CDS 30.0%
TTGAGTGGTGAGAATTATTA+AGG - chr7_3:28549430-28549449 Msa1099680:CDS 30.0%
! TTACAGGAATAATGCTGATT+TGG - chr7_3:28549696-28549715 Msa1099680:CDS 30.0%
!! ATAATGCTGATTTGGTTATG+TGG - chr7_3:28549704-28549723 Msa1099680:CDS 30.0%
TGATAGCAATTATTATCCTG+AGG - chr7_3:28549800-28549819 Msa1099680:CDS 30.0%
CTTAATGACACATTAATAGC+AGG + chr7_3:28549874-28549893 None:intergenic 30.0%
AAAACCTGAAACATGAATGT+TGG + chr7_3:28550239-28550258 None:intergenic 30.0%
!!! AACATTCATGTTTCAGGTTT+TGG - chr7_3:28550238-28550257 Msa1099680:intron 30.0%
!!! ACATTCATGTTTCAGGTTTT+GGG - chr7_3:28550239-28550258 Msa1099680:intron 30.0%
AGTTGCTACTGAAAAAATCA+TGG + chr7_3:28550332-28550351 None:intergenic 30.0%
!!! GATTTTTTCAGTAGCAACTT+AGG - chr7_3:28550333-28550352 Msa1099680:intron 30.0%
TAGGTCATATTCATCAGAAA+AGG + chr7_3:28550368-28550387 None:intergenic 30.0%
!! CAATAACTTGCCAACATTTT+TGG - chr7_3:28550452-28550471 Msa1099680:CDS 30.0%
GAAAATTTCTTCCAAGATTG+CGG - chr7_3:28550690-28550709 Msa1099680:exon 30.0%
GAATCCAGAAACAAATTACT+TGG + chr7_3:28550869-28550888 None:intergenic 30.0%
AAAGCAAGATACTAAATACC+TGG + chr7_3:28551013-28551032 None:intergenic 30.0%
!!! ATGACCAAGGTTTTAAATCT+CGG - chr7_3:28551034-28551053 Msa1099680:intron 30.0%
! ATAACCGAGATTTAAAACCT+TGG + chr7_3:28551041-28551060 None:intergenic 30.0%
CTATTATTGTGCTTGTGATA+TGG - chr7_3:28551097-28551116 Msa1099680:intron 30.0%
! AAAAGCATAAAATTCCTGGT+GGG + chr7_3:28551361-28551380 None:intergenic 30.0%
! AAAAAGCATAAAATTCCTGG+TGG + chr7_3:28551362-28551381 None:intergenic 30.0%
!!! TGCATACATGTTGTTGATTT+TGG - chr7_3:28551390-28551409 Msa1099680:intron 30.0%
AGTGTTGTCTTCATTCAATA+GGG - chr7_3:28551504-28551523 Msa1099680:intron 30.0%
TTCAATAGGGAGATGTTTAA+TGG - chr7_3:28551517-28551536 Msa1099680:intron 30.0%
AAGTCCTCACTACAAAATTT+GGG + chr7_3:28551617-28551636 None:intergenic 30.0%
TAAGTCCTCACTACAAAATT+TGG + chr7_3:28551618-28551637 None:intergenic 30.0%
TAACAAAGCTGAAAAATCCT+TGG - chr7_3:28551865-28551884 Msa1099680:five_prime_UTR 30.0%
AACAAAGCTGAAAAATCCTT+GGG - chr7_3:28551866-28551885 Msa1099680:five_prime_UTR 30.0%
!! AACTTTTGGAAATTGTATGC+TGG - chr7_3:28552024-28552043 Msa1099680:five_prime_UTR 30.0%
!! CATGTTGATTCTATGGAGTT+TGG + chr7_3:28544308-28544327 None:intergenic 35.0%
!! GAGTTTGCATGTTGATTCTA+TGG + chr7_3:28544315-28544334 None:intergenic 35.0%
!! TCATTTTTGAACCCTCATGA+TGG - chr7_3:28544333-28544352 Msa1099680:three_prime_UTR 35.0%
AAGGTGAAAATTGAGAGAGA+GGG + chr7_3:28544410-28544429 None:intergenic 35.0%
! TCTCTCTCAATTTTCACCTT+GGG - chr7_3:28544410-28544429 Msa1099680:three_prime_UTR 35.0%
! GGCACTGAATATGATTTATC+AGG - chr7_3:28544468-28544487 Msa1099680:three_prime_UTR 35.0%
! ATGGTCTGAAGCAAAAAACA+AGG - chr7_3:28544491-28544510 Msa1099680:three_prime_UTR 35.0%
! AGTAGTGTTGTTAGAGTTTG+AGG - chr7_3:28544737-28544756 Msa1099680:three_prime_UTR 35.0%
AATTGCCTGAATTAAGGTGT+AGG - chr7_3:28544925-28544944 Msa1099680:intron 35.0%
TCAAAAGGGCCCTATAATTA+GGG + chr7_3:28544976-28544995 None:intergenic 35.0%
TTCAAAAGGGCCCTATAATT+AGG + chr7_3:28544977-28544996 None:intergenic 35.0%
!! GGGCCCTTTTGAAAAAATAA+CGG - chr7_3:28544984-28545003 Msa1099680:intron 35.0%
! TTATCCTTTAAGAGAGAGGT+TGG - chr7_3:28545067-28545086 Msa1099680:intron 35.0%
TAAACCAACCTCTCTCTTAA+AGG + chr7_3:28545074-28545093 None:intergenic 35.0%
TGTAGTTGGAAATAGCAAAG+GGG - chr7_3:28545174-28545193 Msa1099680:intron 35.0%
! AGCAAAGGGGTCTTATAAAA+AGG - chr7_3:28545187-28545206 Msa1099680:intron 35.0%
! GCAAAGGGGTCTTATAAAAA+GGG - chr7_3:28545188-28545207 Msa1099680:intron 35.0%
! AAGGGTCTTATAATTAGGGA+CGG - chr7_3:28545229-28545248 Msa1099680:intron 35.0%
TGTGAGTGTGTTATGATTCA+AGG - chr7_3:28545288-28545307 Msa1099680:intron 35.0%
GGAATGTAAATCCTCTCTTA+AGG - chr7_3:28545340-28545359 Msa1099680:intron 35.0%
! TTGGGTATCTGCTTCTTTTA+AGG - chr7_3:28545660-28545679 Msa1099680:intron 35.0%
TTCAAAAACACCAGCAACTT+AGG + chr7_3:28545747-28545766 None:intergenic 35.0%
AATGATGTAAGCATGTCTGA+TGG - chr7_3:28545865-28545884 Msa1099680:three_prime_UTR 35.0%
! TGTTGTGCACAAGATTTGTT+TGG - chr7_3:28546118-28546137 Msa1099680:three_prime_UTR 35.0%
!!! TGGTGTTTTTTTTTGGAGTG+AGG - chr7_3:28546138-28546157 Msa1099680:three_prime_UTR 35.0%
!! ACAAGATATTTTTGTGGCCT+TGG - chr7_3:28546172-28546191 Msa1099680:three_prime_UTR 35.0%
AGTCGAAACACAATGTATTG+AGG - chr7_3:28546243-28546262 Msa1099680:intron 35.0%
ATTGAAATCCAGGGAAATCT+TGG - chr7_3:28546422-28546441 Msa1099680:intron 35.0%
AGGTACCAAGATAATGTCAA+TGG + chr7_3:28546697-28546716 None:intergenic 35.0%
TATTAGGAACAGGCAGAATA+TGG + chr7_3:28546917-28546936 None:intergenic 35.0%
TCAGAGGAATTATTAGGAAC+AGG + chr7_3:28546927-28546946 None:intergenic 35.0%
CTCTTCTCAGAGGAATTATT+AGG + chr7_3:28546933-28546952 None:intergenic 35.0%
! ATCTTCGTATCAGTTTTCTG+AGG - chr7_3:28547070-28547089 Msa1099680:three_prime_UTR 35.0%
TTAGTGTACAAAATCAGTGC+TGG + chr7_3:28547246-28547265 None:intergenic 35.0%
!!! GCACTGATTTTGTACACTAA+CGG - chr7_3:28547246-28547265 Msa1099680:intron 35.0%
!!! CACTGATTTTGTACACTAAC+GGG - chr7_3:28547247-28547266 Msa1099680:intron 35.0%
AGACAAATTGCCTTCTTCAT+TGG - chr7_3:28547329-28547348 Msa1099680:intron 35.0%
AAGAAGAAGGTTTGAAAGGA+TGG + chr7_3:28547577-28547596 None:intergenic 35.0%
TTATACTGAATAGCATGTCG+CGG + chr7_3:28547789-28547808 None:intergenic 35.0%
! TTTTCATGTTGGTACCTGTT+TGG - chr7_3:28547892-28547911 Msa1099680:intron 35.0%
TTCAATCATCACACTTGTGA+TGG - chr7_3:28548079-28548098 Msa1099680:three_prime_UTR 35.0%
! ATGGGAGAATATTTTGCTGA+TGG - chr7_3:28548185-28548204 Msa1099680:three_prime_UTR 35.0%
! TAATGGGTCATTGTACTTCA+AGG - chr7_3:28548288-28548307 Msa1099680:three_prime_UTR 35.0%
GATGTTTGACAAGTTATAGC+AGG - chr7_3:28548312-28548331 Msa1099680:three_prime_UTR 35.0%
AAACATGGTAAAGAACCTGA+TGG + chr7_3:28548502-28548521 None:intergenic 35.0%
! AGAGGCTTTTGTAGAAACTT+GGG + chr7_3:28548616-28548635 None:intergenic 35.0%
! AAGAGGCTTTTGTAGAAACT+TGG + chr7_3:28548617-28548636 None:intergenic 35.0%
ACTTCAGCAATAAGTTTGCA+TGG - chr7_3:28548773-28548792 Msa1099680:CDS 35.0%
!! ATAATGGATGGTGACACAAA+AGG + chr7_3:28548824-28548843 None:intergenic 35.0%
! GCGAAAGTCATAATAATGGA+TGG + chr7_3:28548836-28548855 None:intergenic 35.0%
CACAGCGAAAGTCATAATAA+TGG + chr7_3:28548840-28548859 None:intergenic 35.0%
TCTGATATGAGATGTGAAGT+TGG - chr7_3:28548889-28548908 Msa1099680:intron 35.0%
CTGATATGAGATGTGAAGTT+GGG - chr7_3:28548890-28548909 Msa1099680:intron 35.0%
TGATATGAGATGTGAAGTTG+GGG - chr7_3:28548891-28548910 Msa1099680:intron 35.0%
AGACCACTGTTAATAGATGA+GGG + chr7_3:28548975-28548994 None:intergenic 35.0%
AAAAGAATAGGTAGGAGGAA+TGG + chr7_3:28549122-28549141 None:intergenic 35.0%
TAGTGAAAAGAATAGGTAGG+AGG + chr7_3:28549127-28549146 None:intergenic 35.0%
CCTATGATAAACAAGATTGC+CGG - chr7_3:28549163-28549182 Msa1099680:intron 35.0%
ACTTTACGTCAAGTTCATTG+TGG + chr7_3:28549219-28549238 None:intergenic 35.0%
TAATGACTACAACGACCTAA+TGG - chr7_3:28549390-28549409 Msa1099680:CDS 35.0%
! TTTTCTGTGTTATCGCCATT+AGG + chr7_3:28549408-28549427 None:intergenic 35.0%
TCTATTCACGAACTCACAAA+AGG - chr7_3:28549514-28549533 Msa1099680:intron 35.0%
GGAGTGAAGTCTATTTCAAT+AGG + chr7_3:28549583-28549602 None:intergenic 35.0%
!! TGATCAACAAAAAGTACCTC+AGG + chr7_3:28549819-28549838 None:intergenic 35.0%
!! CTTTAAGATGTTGTGGAAAG+CGG - chr7_3:28550074-28550093 Msa1099680:intron 35.0%
TATATCAACCTCTAGATGAC+AGG - chr7_3:28550193-28550212 Msa1099680:intron 35.0%
ATCTCCAACATTCATGTTTC+AGG - chr7_3:28550232-28550251 Msa1099680:intron 35.0%
! TTATCTCAATGTGTTGCTAG+AGG - chr7_3:28550268-28550287 Msa1099680:CDS 35.0%
!! GTACAAAAGTCGTTTTACCT+CGG + chr7_3:28550302-28550321 None:intergenic 35.0%
GATGAATATGACCTACATTC+AGG - chr7_3:28550373-28550392 Msa1099680:intron 35.0%
TCACAAATAGACCTGAATGT+AGG + chr7_3:28550387-28550406 None:intergenic 35.0%
!!! AACTTGCCAACATTTTTGGT+TGG - chr7_3:28550456-28550475 Msa1099680:CDS 35.0%
CAATGACCAACCAAAAATGT+TGG + chr7_3:28550465-28550484 None:intergenic 35.0%
ATGTTAAGAGCTTACGCTTT+GGG + chr7_3:28550802-28550821 None:intergenic 35.0%
AATGTTAAGAGCTTACGCTT+TGG + chr7_3:28550803-28550822 None:intergenic 35.0%
!! GCTTCCAAGTAATTTGTTTC+TGG - chr7_3:28550862-28550881 Msa1099680:intron 35.0%
TTGTGATATGGTCTCTATTC+AGG - chr7_3:28551109-28551128 Msa1099680:intron 35.0%
TGTGATATGGTCTCTATTCA+GGG - chr7_3:28551110-28551129 Msa1099680:intron 35.0%
!!! GTGATCACTTTTTCTCCATT+TGG - chr7_3:28551192-28551211 Msa1099680:intron 35.0%
AAAGCATAAAATTCCTGGTG+GGG + chr7_3:28551360-28551379 None:intergenic 35.0%
! CAACTTTTTATCTGCACTTG+TGG - chr7_3:28551458-28551477 Msa1099680:intron 35.0%
! GAGTGTTGTCTTCATTCAAT+AGG - chr7_3:28551503-28551522 Msa1099680:intron 35.0%
! TAGTCCCAAATTTTGTAGTG+AGG - chr7_3:28551610-28551629 Msa1099680:intron 35.0%
!! AGCATTTTTCAAACCGAGTT+TGG - chr7_3:28551750-28551769 Msa1099680:five_prime_UTR 35.0%
!! ATTTTTCAAACCGAGTTTGG+AGG - chr7_3:28551753-28551772 Msa1099680:five_prime_UTR 35.0%
!! TTTTTCAAACCGAGTTTGGA+GGG - chr7_3:28551754-28551773 Msa1099680:five_prime_UTR 35.0%
GACATGCTGTTATTCGATTT+AGG - chr7_3:28551935-28551954 Msa1099680:five_prime_UTR 35.0%
GGTGAGGATTGAAGAATTTG+GGG + chr7_3:28544286-28544305 None:intergenic 40.0%
GGGTGAGGATTGAAGAATTT+GGG + chr7_3:28544287-28544306 None:intergenic 40.0%
TGGGTGAGGATTGAAGAATT+TGG + chr7_3:28544288-28544307 None:intergenic 40.0%
CAAGGTGAAAATTGAGAGAG+AGG + chr7_3:28544411-28544430 None:intergenic 40.0%
! CTCTCTCTCAATTTTCACCT+TGG - chr7_3:28544409-28544428 Msa1099680:three_prime_UTR 40.0%
TCAAACAAGAACCTCTTGCA+TGG - chr7_3:28544446-28544465 Msa1099680:three_prime_UTR 40.0%
CAAACAAGAACCTCTTGCAT+GGG - chr7_3:28544447-28544466 Msa1099680:three_prime_UTR 40.0%
GGAAGATTAGAGTTAGGGTT+TGG - chr7_3:28544512-28544531 Msa1099680:three_prime_UTR 40.0%
TGCTCAGCTGCAATAATTGA+TGG - chr7_3:28544536-28544555 Msa1099680:three_prime_UTR 40.0%
GCTCAGCTGCAATAATTGAT+GGG - chr7_3:28544537-28544556 Msa1099680:three_prime_UTR 40.0%
!!! GTTCTGTTTTTGCTGATTGC+TGG - chr7_3:28544580-28544599 Msa1099680:three_prime_UTR 40.0%
ACACTCCTACACCTTAATTC+AGG + chr7_3:28544933-28544952 None:intergenic 40.0%
TACCTCCGTCCCTAATTATA+GGG - chr7_3:28544964-28544983 Msa1099680:intron 40.0%
ATTAGTACATCACTCACGCA+AGG + chr7_3:28545896-28545915 None:intergenic 40.0%
TGCGTGAGTGATGTACTAAT+AGG - chr7_3:28545896-28545915 Msa1099680:three_prime_UTR 40.0%
GCGTGAGTGATGTACTAATA+GGG - chr7_3:28545897-28545916 Msa1099680:three_prime_UTR 40.0%
TGTATGTATGTGGTTCTTGC+AGG - chr7_3:28545956-28545975 Msa1099680:three_prime_UTR 40.0%
GTATGTATGTGGTTCTTGCA+GGG - chr7_3:28545957-28545976 Msa1099680:three_prime_UTR 40.0%
TATGTATGTGGTTCTTGCAG+GGG - chr7_3:28545958-28545977 Msa1099680:three_prime_UTR 40.0%
ACTGGTAGGTGTTTGGAAAT+GGG - chr7_3:28546008-28546027 Msa1099680:three_prime_UTR 40.0%
AAATTGCTATATCTGCGCCA+AGG + chr7_3:28546192-28546211 None:intergenic 40.0%
! GAATTTGGTTCATTTGACCG+AGG - chr7_3:28546218-28546237 Msa1099680:three_prime_UTR 40.0%
! CGCCAACATTTTTCTTCCTT+AGG + chr7_3:28546815-28546834 None:intergenic 40.0%
! TCCTCTGAGAAGAGTAGAAA+TGG - chr7_3:28546939-28546958 Msa1099680:three_prime_UTR 40.0%
TCCATTTCTACTCTTCTCAG+AGG + chr7_3:28546943-28546962 None:intergenic 40.0%
GGCTTCTTAATGCAACATGT+GGG - chr7_3:28547472-28547491 Msa1099680:intron 40.0%
GCACAAGAAGAAGGTTTGAA+AGG + chr7_3:28547581-28547600 None:intergenic 40.0%
TCAAACCTTCTTCTTGTGCT+TGG - chr7_3:28547582-28547601 Msa1099680:three_prime_UTR 40.0%
AAGTTCCAAGCACAAGAAGA+AGG + chr7_3:28547590-28547609 None:intergenic 40.0%
!!! CTTTTTTTTGCTCCACTCCA+AGG + chr7_3:28547638-28547657 None:intergenic 40.0%
CTTGGAGTGGAGCAAAAAAA+AGG - chr7_3:28547636-28547655 Msa1099680:three_prime_UTR 40.0%
ATTGTTTGCGAATGTCAGTG+AGG - chr7_3:28547727-28547746 Msa1099680:intron 40.0%
TAAATAGGGTGCAGACTTGA+TGG - chr7_3:28547835-28547854 Msa1099680:three_prime_UTR 40.0%
!!! GACTTGATGGTTTTCAAGTC+TGG - chr7_3:28547848-28547867 Msa1099680:three_prime_UTR 40.0%
ATTCGCGAAGATAGCGAATA+AGG + chr7_3:28548012-28548031 None:intergenic 40.0%
CTGATGTCACCTAACTTACT+TGG + chr7_3:28548432-28548451 None:intergenic 40.0%
! GAATACCCTGAACTTTTTGC+AGG - chr7_3:28548573-28548592 Msa1099680:exon 40.0%
CTTGACCTGCAAAAAGTTCA+GGG + chr7_3:28548581-28548600 None:intergenic 40.0%
!!! GTAGAAACTTGGGTTGGTTT+TGG + chr7_3:28548606-28548625 None:intergenic 40.0%
! GCTTTTGTAGAAACTTGGGT+TGG + chr7_3:28548612-28548631 None:intergenic 40.0%
TAAGACTGTAGCTGCTATTC+AGG - chr7_3:28548686-28548705 Msa1099680:CDS 40.0%
GATATGAGATGTGAAGTTGG+GGG - chr7_3:28548892-28548911 Msa1099680:intron 40.0%
ATATGAGATGTGAAGTTGGG+GGG - chr7_3:28548893-28548912 Msa1099680:intron 40.0%
CATCCCTCATCTATTAACAG+TGG - chr7_3:28548969-28548988 Msa1099680:intron 40.0%
GAGACCACTGTTAATAGATG+AGG + chr7_3:28548976-28548995 None:intergenic 40.0%
! CCGGCAATCTTGTTTATCAT+AGG + chr7_3:28549166-28549185 None:intergenic 40.0%
ATGATAAACAAGATTGCCGG+TGG - chr7_3:28549166-28549185 Msa1099680:intron 40.0%
AGCTGCTTGAGATAAAGTTC+TGG + chr7_3:28549259-28549278 None:intergenic 40.0%
AGAACTTTATCTCAAGCAGC+TGG - chr7_3:28549258-28549277 Msa1099680:CDS 40.0%
! TGAACTCAGGAGTATGTGTA+AGG + chr7_3:28549345-28549364 None:intergenic 40.0%
AAATCACAGGTAGTGAACTC+AGG + chr7_3:28549358-28549377 None:intergenic 40.0%
CTAATTTCTCAAAGCCTGCA+AGG - chr7_3:28549751-28549770 Msa1099680:CDS 40.0%
!! GTTCTGGCTTTAAGATGTTG+TGG - chr7_3:28550067-28550086 Msa1099680:intron 40.0%
CCTAAGTGAATGCACAAGTT+CGG - chr7_3:28550107-28550126 Msa1099680:intron 40.0%
AACACAAACCTGTCATCTAG+AGG + chr7_3:28550204-28550223 None:intergenic 40.0%
! CATTGCACATGTTCTGAGTA+TGG - chr7_3:28550480-28550499 Msa1099680:CDS 40.0%
GATTGCTTGATGTGTGATCA+AGG - chr7_3:28550504-28550523 Msa1099680:CDS 40.0%
GATGAGGATGGAAGGTTTAA+AGG - chr7_3:28550741-28550760 Msa1099680:intron 40.0%
GATGGAAGGTTTAAAGGCTT+TGG - chr7_3:28550747-28550766 Msa1099680:intron 40.0%
TCTATCTAGCATTAGATGCC+AGG - chr7_3:28550992-28551011 Msa1099680:intron 40.0%
GTATCTTGCTTTCATGACCA+AGG - chr7_3:28551021-28551040 Msa1099680:intron 40.0%
!! TGCTTTTGAGTGTAGTGAAC+TGG - chr7_3:28551240-28551259 Msa1099680:intron 40.0%
!!! ATATTTTTTGCTTCCCCACC+AGG - chr7_3:28551344-28551363 Msa1099680:intron 40.0%
!! TGAGCATTGGAGAAACGAAA+TGG - chr7_3:28551664-28551683 Msa1099680:intron 40.0%
AGCAACTGCATTGTCTTTCT+TGG + chr7_3:28551794-28551813 None:intergenic 40.0%
AAAGCTGAAAAATCCTTGGG+AGG - chr7_3:28551869-28551888 Msa1099680:five_prime_UTR 40.0%
!! AGGCTGGTTCCAATTTGTTA+GGG - chr7_3:28551892-28551911 Msa1099680:five_prime_UTR 40.0%
GGTGATTGTCCCTAACAAAT+TGG + chr7_3:28551904-28551923 None:intergenic 40.0%
AACTCCACAAACAACACTGT+AGG + chr7_3:28551968-28551987 None:intergenic 40.0%
!! TACAGTGTTGTTTGTGGAGT+TGG - chr7_3:28551967-28551986 Msa1099680:five_prime_UTR 40.0%
GATTCTATGGAGTTTGGGTG+AGG + chr7_3:28544302-28544321 None:intergenic 45.0%
GTTCAAGGGAAGAGGATAAG+AGG + chr7_3:28544383-28544402 None:intergenic 45.0%
ATATTCAGTGCCCATGCAAG+AGG + chr7_3:28544460-28544479 None:intergenic 45.0%
CTACCTCCGTCCCTAATTAT+AGG - chr7_3:28544963-28544982 Msa1099680:intron 45.0%
AAGGGCCCTATAATTAGGGA+CGG + chr7_3:28544972-28544991 None:intergenic 45.0%
! GGTCTTATAATTAGGGACGG+AGG - chr7_3:28545232-28545251 Msa1099680:intron 45.0%
CTCAAGACCTGATGTTGTTG+TGG - chr7_3:28545600-28545619 Msa1099680:intron 45.0%
AGACCTGATGTTGTTGTGGT+AGG - chr7_3:28545604-28545623 Msa1099680:intron 45.0%
ACTCCTACCACAACAACATC+AGG + chr7_3:28545610-28545629 None:intergenic 45.0%
! CTCTTTTGTGACCAATGCCT+AGG + chr7_3:28545795-28545814 None:intergenic 45.0%
GACTGGTAGGTGTTTGGAAA+TGG - chr7_3:28546007-28546026 Msa1099680:three_prime_UTR 45.0%
CATTGTGTTTCGACTGTCCT+CGG + chr7_3:28546238-28546257 None:intergenic 45.0%
GAAATCCAGGGAAATCTTGG+TGG - chr7_3:28546425-28546444 Msa1099680:intron 45.0%
AATCTTGGTGGAGCTCGAAT+AGG - chr7_3:28546437-28546456 Msa1099680:intron 45.0%
TCCAGCAACAAATTCGCAGA+CGG + chr7_3:28546476-28546495 None:intergenic 45.0%
ACCTGTAGGACCAATGAAGA+AGG + chr7_3:28547342-28547361 None:intergenic 45.0%
GGGCTTCTTAATGCAACATG+TGG - chr7_3:28547471-28547490 Msa1099680:intron 45.0%
! CCTAACTTACTTGGTGACTC+TGG + chr7_3:28548423-28548442 None:intergenic 45.0%
CCAGAGTCACCAAGTAAGTT+AGG - chr7_3:28548420-28548439 Msa1099680:three_prime_UTR 45.0%
CCTTGACCTGCAAAAAGTTC+AGG + chr7_3:28548582-28548601 None:intergenic 45.0%
! CCTGAACTTTTTGCAGGTCA+AGG - chr7_3:28548579-28548598 Msa1099680:exon 45.0%
! AGGTTTTTGTGCAGTTGGGT+TGG + chr7_3:28548643-28548662 None:intergenic 45.0%
! CAGCAGGTTTTTGTGCAGTT+GGG + chr7_3:28548647-28548666 None:intergenic 45.0%
GCAACTGGCATCAGAATACT+TGG + chr7_3:28549087-28549106 None:intergenic 45.0%
TCAAGCAGCTGGTTGTTTGT+GGG - chr7_3:28549269-28549288 Msa1099680:CDS 45.0%
TTGAATGCACTGCACCTGAA+GGG + chr7_3:28549607-28549626 None:intergenic 45.0%
TTTGAATGCACTGCACCTGA+AGG + chr7_3:28549608-28549627 None:intergenic 45.0%
TCCATGAAGATGTACCTTGC+AGG + chr7_3:28549768-28549787 None:intergenic 45.0%
CCGAACTTGTGCATTCACTT+AGG + chr7_3:28550110-28550129 None:intergenic 45.0%
CAACAAACTCTCCGCAATCT+TGG + chr7_3:28550704-28550723 None:intergenic 45.0%
TGTACGTCTTGCTTCAGATG+AGG - chr7_3:28550725-28550744 Msa1099680:five_prime_UTR 45.0%
TTGCTTCAGATGAGGATGGA+AGG - chr7_3:28550733-28550752 Msa1099680:intron 45.0%
TGTTGAGTTTGCAACTGCAG+TGG - chr7_3:28550773-28550792 Msa1099680:intron 45.0%
TTAGAACCTCCCTCCAAACT+CGG + chr7_3:28551766-28551785 None:intergenic 45.0%
CAGTTGCTTGATGTGCTTAC+CGG - chr7_3:28551806-28551825 Msa1099680:five_prime_UTR 45.0%
!! TTCAGCTTTGTTACGCTCAG+CGG + chr7_3:28551858-28551877 None:intergenic 45.0%
! GAGGCTGGTTCCAATTTGTT+AGG - chr7_3:28551891-28551910 Msa1099680:five_prime_UTR 45.0%
TAGGGACAATCACCTACAAG+AGG - chr7_3:28551910-28551929 Msa1099680:five_prime_UTR 45.0%
AGGGACAATCACCTACAAGA+GGG - chr7_3:28551911-28551930 Msa1099680:five_prime_UTR 45.0%
!! TCCTCCTACAGTGTTGTTTG+TGG - chr7_3:28551961-28551980 Msa1099680:five_prime_UTR 45.0%
TCCACAAACAACACTGTAGG+AGG + chr7_3:28551965-28551984 None:intergenic 45.0%
!! AATATATAATAAAATGAAAT+AGG + chr7_3:28547665-28547684 None:intergenic 5.0%
AGAGAGACATGGGAAGAAGG+GGG + chr7_3:28544243-28544262 None:intergenic 50.0%
GAGAGAGACATGGGAAGAAG+GGG + chr7_3:28544244-28544263 None:intergenic 50.0%
CGAGAGAGACATGGGAAGAA+GGG + chr7_3:28544245-28544264 None:intergenic 50.0%
CCTTCTTCCCATGTCTCTCT+CGG - chr7_3:28544243-28544262 Msa1099680:three_prime_UTR 50.0%
TTGGGGCTAAGAGAGTGAGA+GGG + chr7_3:28544269-28544288 None:intergenic 50.0%
! TTTGGGGCTAAGAGAGTGAG+AGG + chr7_3:28544270-28544289 None:intergenic 50.0%
AGAGAGAGGGACACGTTCAA+GGG + chr7_3:28544397-28544416 None:intergenic 50.0%
TGCAGCAGATCCTAAGTTGC+TGG - chr7_3:28545734-28545753 Msa1099680:three_prime_UTR 50.0%
GTAACACCGTACCTGTACCT+AGG - chr7_3:28545775-28545794 Msa1099680:three_prime_UTR 50.0%
CCAATGCCTAGGTACAGGTA+CGG + chr7_3:28545784-28545803 None:intergenic 50.0%
TGTGACCAATGCCTAGGTAC+AGG + chr7_3:28545789-28545808 None:intergenic 50.0%
GCTTTGGCAATCACCAATCC+TGG - chr7_3:28545985-28546004 Msa1099680:three_prime_UTR 50.0%
!! ATCACCAATCCTGGACTGGT+AGG - chr7_3:28545994-28546013 Msa1099680:three_prime_UTR 50.0%
AACACCTACCAGTCCAGGAT+TGG + chr7_3:28546001-28546020 None:intergenic 50.0%
!! ATCCTGGACTGGTAGGTGTT+TGG - chr7_3:28546001-28546020 Msa1099680:three_prime_UTR 50.0%
TTCCAAACACCTACCAGTCC+AGG + chr7_3:28546006-28546025 None:intergenic 50.0%
!! ACCGTCTGCGAATTTGTTGC+TGG - chr7_3:28546472-28546491 Msa1099680:three_prime_UTR 50.0%
TTGCTGGAATACTCGCGACT+TGG - chr7_3:28546488-28546507 Msa1099680:three_prime_UTR 50.0%
! ATACTCGCGACTTGGCTTAG+TGG - chr7_3:28546496-28546515 Msa1099680:three_prime_UTR 50.0%
TCTGCATAGCTGAGTGCAAG+TGG + chr7_3:28546535-28546554 None:intergenic 50.0%
GCCTTCTTCATTGGTCCTAC+AGG - chr7_3:28547338-28547357 Msa1099680:intron 50.0%
CTTGGAACTTCCCTGCTTTG+TGG - chr7_3:28547600-28547619 Msa1099680:three_prime_UTR 50.0%
TGCAATGCCACCACAAAGCA+GGG + chr7_3:28547613-28547632 None:intergenic 50.0%
TTGCAATGCCACCACAAAGC+AGG + chr7_3:28547614-28547633 None:intergenic 50.0%
TGTGGTGGCATTGCAAACCT+TGG - chr7_3:28547618-28547637 Msa1099680:three_prime_UTR 50.0%
TGGCATTGCAAACCTTGGAG+TGG - chr7_3:28547623-28547642 Msa1099680:three_prime_UTR 50.0%
GAATGTCAGTGAGGTTAGCG+TGG - chr7_3:28547736-28547755 Msa1099680:intron 50.0%
! GCAGCAGGTTTTTGTGCAGT+TGG + chr7_3:28548648-28548667 None:intergenic 50.0%
GCTACAGTCTTAGCATGTGG+TGG + chr7_3:28548678-28548697 None:intergenic 50.0%
GCAGCTACAGTCTTAGCATG+TGG + chr7_3:28548681-28548700 None:intergenic 50.0%
TGTAGCTGCTATTCAGGCAG+AGG - chr7_3:28548692-28548711 Msa1099680:CDS 50.0%
ATGTGAAGTTGGGGGGAGAA+GGG - chr7_3:28548900-28548919 Msa1099680:intron 50.0%
CTCAAGCAGCTGGTTGTTTG+TGG - chr7_3:28549268-28549287 Msa1099680:CDS 50.0%
TAGACTTCACTCCACCCTTC+AGG - chr7_3:28549590-28549609 Msa1099680:intron 50.0%
GCCTGCAAGGTACATCTTCA+TGG - chr7_3:28549764-28549783 Msa1099680:CDS 50.0%
GATGTTGTGGAAAGCGGTGA+AGG - chr7_3:28550080-28550099 Msa1099680:intron 50.0%
TGCTAGAGGCTATTGATCCG+AGG - chr7_3:28550282-28550301 Msa1099680:intron 50.0%
TGATGTGTGATCAAGGCCCA+TGG - chr7_3:28550511-28550530 Msa1099680:CDS 50.0%
CGTCTTGCTTCAGATGAGGA+TGG - chr7_3:28550729-28550748 Msa1099680:intron 50.0%
TTCAAACCGAGTTTGGAGGG+AGG - chr7_3:28551757-28551776 Msa1099680:five_prime_UTR 50.0%
GAGTTTGGAGGGAGGTTCTA+AGG - chr7_3:28551765-28551784 Msa1099680:five_prime_UTR 50.0%
GCGGCAATCGTATTCATGAC+CGG + chr7_3:28551828-28551847 None:intergenic 50.0%
TGTTACGCTCAGCGGTAATG+AGG + chr7_3:28551850-28551869 None:intergenic 50.0%
GCTGAAAAATCCTTGGGAGG+AGG - chr7_3:28551872-28551891 Msa1099680:five_prime_UTR 50.0%
AAAAATCCTTGGGAGGAGGC+TGG - chr7_3:28551876-28551895 Msa1099680:five_prime_UTR 50.0%
CCGAGAGAGACATGGGAAGA+AGG + chr7_3:28544246-28544265 None:intergenic 55.0%
AGGGACACGTTCAAGGGAAG+AGG + chr7_3:28544391-28544410 None:intergenic 55.0%
GAGAGAGAGGGACACGTTCA+AGG + chr7_3:28544398-28544417 None:intergenic 55.0%
GGCCCTATAATTAGGGACGG+AGG + chr7_3:28544969-28544988 None:intergenic 55.0%
CCGTACCTGTACCTAGGCAT+TGG - chr7_3:28545781-28545800 Msa1099680:three_prime_UTR 55.0%
ATGTGGTTCTTGCAGGGGAG+CGG - chr7_3:28545963-28545982 Msa1099680:three_prime_UTR 55.0%
GGCAATCACCAATCCTGGAC+TGG - chr7_3:28545990-28546009 Msa1099680:three_prime_UTR 55.0%
GAGCTCCACCAAGATTTCCC+TGG + chr7_3:28546433-28546452 None:intergenic 55.0%
GGAACTTCCCTGCTTTGTGG+TGG - chr7_3:28547603-28547622 Msa1099680:three_prime_UTR 55.0%
GTCAGTGAGGTTAGCGTGGA+TGG - chr7_3:28547740-28547759 Msa1099680:intron 55.0%
!! TGCAGTTGGGTTGGCAGAAG+AGG + chr7_3:28548634-28548653 None:intergenic 55.0%
!! TGTGGTGGACGATATGCAGC+AGG + chr7_3:28548663-28548682 None:intergenic 55.0%
GATGTGAAGTTGGGGGGAGA+AGG - chr7_3:28548899-28548918 Msa1099680:intron 55.0%
GCAGCTGGTTGTTTGTGGGA+TGG - chr7_3:28549273-28549292 Msa1099680:CDS 55.0%
AATGCACTGCACCTGAAGGG+TGG + chr7_3:28549604-28549623 None:intergenic 55.0%
TCTGCACTTGTGGCACTTGC+AGG - chr7_3:28551468-28551487 Msa1099680:intron 55.0%
GGCACTTGCAGGAACTGCAT+TGG - chr7_3:28551479-28551498 Msa1099680:intron 55.0%
TACGCTCAGCGGTAATGAGG+CGG + chr7_3:28551847-28551866 None:intergenic 55.0%
ACAGCATGTCGCCCTCTTGT+AGG + chr7_3:28551925-28551944 None:intergenic 55.0%
GAGAGGGCCGAGAGAGACAT+GGG + chr7_3:28544253-28544272 None:intergenic 60.0%
TGAGAGGGCCGAGAGAGACA+TGG + chr7_3:28544254-28544273 None:intergenic 60.0%
TTCTTGCAGGGGAGCGGCTT+TGG - chr7_3:28545969-28545988 Msa1099680:three_prime_UTR 60.0%
! CTCGCGACTTGGCTTAGTGG+AGG - chr7_3:28546499-28546518 Msa1099680:three_prime_UTR 60.0%
TTGGAACCAGCCTCCTCCCA+AGG + chr7_3:28551885-28551904 None:intergenic 60.0%
! TGGACGTGCTGCTGCGCCAC+CGG + chr7_3:28549185-28549204 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 28544209 28552069 28544209 ID=Msa1099680;Name=Msa1099680
chr7_3 mRNA 28544209 28552069 28544209 ID=Msa1099680-mRNA-1;Parent=Msa1099680;Name=Msa1099680-mRNA-1;_AED=0.17;_eAED=0.17;_QI=389|0.8|0.87|1|0.46|0.62|16|2609|275
chr7_3 exon 28544209 28544788 28544209 ID=Msa1099680-mRNA-1:exon:6042;Parent=Msa1099680-mRNA-1
chr7_3 exon 28545472 28545589 28545472 ID=Msa1099680-mRNA-1:exon:6041;Parent=Msa1099680-mRNA-1
chr7_3 exon 28545715 28546240 28545715 ID=Msa1099680-mRNA-1:exon:6040;Parent=Msa1099680-mRNA-1
chr7_3 exon 28546457 28546576 28546457 ID=Msa1099680-mRNA-1:exon:6039;Parent=Msa1099680-mRNA-1
chr7_3 exon 28546667 28546765 28546667 ID=Msa1099680-mRNA-1:exon:6038;Parent=Msa1099680-mRNA-1
chr7_3 exon 28546842 28547124 28546842 ID=Msa1099680-mRNA-1:exon:6037;Parent=Msa1099680-mRNA-1
chr7_3 exon 28547208 28547235 28547208 ID=Msa1099680-mRNA-1:exon:6036;Parent=Msa1099680-mRNA-1
chr7_3 exon 28547565 28547683 28547565 ID=Msa1099680-mRNA-1:exon:6035;Parent=Msa1099680-mRNA-1
chr7_3 exon 28547773 28547870 28547773 ID=Msa1099680-mRNA-1:exon:6034;Parent=Msa1099680-mRNA-1
chr7_3 exon 28547945 28548812 28547945 ID=Msa1099680-mRNA-1:exon:6033;Parent=Msa1099680-mRNA-1
chr7_3 exon 28549255 28549502 28549255 ID=Msa1099680-mRNA-1:exon:6032;Parent=Msa1099680-mRNA-1
chr7_3 exon 28549688 28549844 28549688 ID=Msa1099680-mRNA-1:exon:6031;Parent=Msa1099680-mRNA-1
chr7_3 exon 28550267 28550300 28550267 ID=Msa1099680-mRNA-1:exon:6030;Parent=Msa1099680-mRNA-1
chr7_3 exon 28550451 28550558 28550451 ID=Msa1099680-mRNA-1:exon:6029;Parent=Msa1099680-mRNA-1
chr7_3 exon 28550657 28550746 28550657 ID=Msa1099680-mRNA-1:exon:6028;Parent=Msa1099680-mRNA-1
chr7_3 exon 28551720 28552069 28551720 ID=Msa1099680-mRNA-1:exon:6027;Parent=Msa1099680-mRNA-1
chr7_3 five_prime_UTR 28551720 28552069 28551720 ID=Msa1099680-mRNA-1:five_prime_utr;Parent=Msa1099680-mRNA-1
chr7_3 five_prime_UTR 28550708 28550746 28550708 ID=Msa1099680-mRNA-1:five_prime_utr;Parent=Msa1099680-mRNA-1
chr7_3 CDS 28550657 28550707 28550657 ID=Msa1099680-mRNA-1:cds;Parent=Msa1099680-mRNA-1
chr7_3 CDS 28550451 28550558 28550451 ID=Msa1099680-mRNA-1:cds;Parent=Msa1099680-mRNA-1
chr7_3 CDS 28550267 28550300 28550267 ID=Msa1099680-mRNA-1:cds;Parent=Msa1099680-mRNA-1
chr7_3 CDS 28549688 28549844 28549688 ID=Msa1099680-mRNA-1:cds;Parent=Msa1099680-mRNA-1
chr7_3 CDS 28549255 28549502 28549255 ID=Msa1099680-mRNA-1:cds;Parent=Msa1099680-mRNA-1
chr7_3 CDS 28548583 28548812 28548583 ID=Msa1099680-mRNA-1:cds;Parent=Msa1099680-mRNA-1
chr7_3 three_prime_UTR 28547945 28548582 28547945 ID=Msa1099680-mRNA-1:three_prime_utr;Parent=Msa1099680-mRNA-1
chr7_3 three_prime_UTR 28547773 28547870 28547773 ID=Msa1099680-mRNA-1:three_prime_utr;Parent=Msa1099680-mRNA-1
chr7_3 three_prime_UTR 28547565 28547683 28547565 ID=Msa1099680-mRNA-1:three_prime_utr;Parent=Msa1099680-mRNA-1
chr7_3 three_prime_UTR 28547208 28547235 28547208 ID=Msa1099680-mRNA-1:three_prime_utr;Parent=Msa1099680-mRNA-1
chr7_3 three_prime_UTR 28546842 28547124 28546842 ID=Msa1099680-mRNA-1:three_prime_utr;Parent=Msa1099680-mRNA-1
chr7_3 three_prime_UTR 28546667 28546765 28546667 ID=Msa1099680-mRNA-1:three_prime_utr;Parent=Msa1099680-mRNA-1
chr7_3 three_prime_UTR 28546457 28546576 28546457 ID=Msa1099680-mRNA-1:three_prime_utr;Parent=Msa1099680-mRNA-1
chr7_3 three_prime_UTR 28545715 28546240 28545715 ID=Msa1099680-mRNA-1:three_prime_utr;Parent=Msa1099680-mRNA-1
chr7_3 three_prime_UTR 28545472 28545589 28545472 ID=Msa1099680-mRNA-1:three_prime_utr;Parent=Msa1099680-mRNA-1
chr7_3 three_prime_UTR 28544209 28544788 28544209 ID=Msa1099680-mRNA-1:three_prime_utr;Parent=Msa1099680-mRNA-1
Gene Sequence

>Msa1099680

ATGAAAATTGCTGAACTAGAACAAGTTAGCTCAAGACCTGATGTTGTTGTGGTTTGGGATGCTACTGCAGCAGATCCTAAGTTGCTGGTGTTTTTGAAATCTTATCGTAACACCGTACCTGTACCTAGGCATTGGTCACAAAAGAGAAAATTTTTGCAGGGGAGCGGCTTTGGCAATCACCAATCCTGGACTGGGAAATCTTGGTGGAGCTCGAATAGGAATAGTTGCGAAACCGTCTGCGAATTTGTTGCTGGAATACTCGCGACTTGGCTTAGTGGAGGTGTTGTTGTTCCACTTGCACTCAGCTATGCAGAAGTAGAGCTTCTCTATGTGATGAATAATTCGGTTCGTATATATGATGTAAATATGCTTCAAAATGAACCTTACCTAAGGAAGAAAAATGTTGGCGATGTGTCTGCTATATTGAGTACTGAAGATCATGGTGAATTAATGCAAAGCATTGCCAATAAAACCTCTTCTCAGTTTTTCCATATTCTGCCTGTTCCTAATAATTCCTCTGAGAAGAGTAGAAATGGACATTCACAAAATGGGGAAATTGATGCAGACAGAATTTTCCTGAAAAATGTCGAAAGATCAATTGGAGGGCTTCTTAATGCAACATGTGGGAATATTAGTGAGCTGATAATAGCAATATTTACTCTTAGCAGCAACCAAATTGTTGTTGTCAAGTATTCTCTTTTAGGTTCCATCCTTTCAAACCTTCTTCTTGTGCTTGGAACTTCCCTGCTTTGTGGTGGCATTGCAAACCTTGGAGTGGAGCAAAAAAAAGGAAGCCTATTTCATTTTATTATATATTGTCAAATATAA
Protein sequence

>Msa1099680

MKIAELEQVSSRPDVVVVWDATAADPKLLVFLKSYRNTVPVPRHWSQKRKFLQGSGFGNHQSWTGKSWWSSNRNSCETVCEFVAGILATWLSGGVVVPLALSYAEVELLYVMNNSVRIYDVNMLQNEPYLRKKNVGDVSAILSTEDHGELMQSIANKTSSQFFHILPVPNNSSEKSRNGHSQNGEIDADRIFLKNVERSIGGLLNATCGNISELIIAIFTLSSNQIVVVKYSLLGSILSNLLLVLGTSLLCGGIANLGVEQKKGSLFHFIIYCQI*