AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1317440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1317440 MtrunA17_Chr4g0004091 72.340 141 18 1 80 220 126 245 3.65e-59 196
Msa1317440 MtrunA17_Chr4g0072161 88.542 96 11 0 372 467 154 249 3.59e-54 187
Msa1317440 MtrunA17_Chr4g0072141 84.375 96 15 0 372 467 2 97 2.16e-51 176
Msa1317440 MtrunA17_Chr4g0004831 63.830 141 30 1 80 220 121 240 5.07e-50 171
Msa1317440 MtrunA17_Chr4g0072181 77.083 96 22 0 372 467 81 176 4.97e-46 164
Msa1317440 MtrunA17_Chr2g0298001 77.778 99 22 0 372 470 283 381 5.74e-46 168
Msa1317440 MtrunA17_Chr4g0045551 71.277 94 3 1 304 373 389 482 8.55e-33 130
Msa1317440 MtrunA17_Chr2g0282041 96.296 54 2 0 1 54 147 200 9.01e-27 113
Msa1317440 MtrunA17_Chr8g0335841 47.788 113 51 1 362 466 233 345 1.28e-26 113
Msa1317440 MtrunA17_Chr4g0047751 88.889 54 6 0 1 54 158 211 7.95e-25 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1317440 AT3G11710.1 79.167 96 20 0 372 467 301 396 3.51e-47 172
Msa1317440 AT4G21660.3 81.250 64 12 0 1 64 163 226 4.05e-26 112
Msa1317440 AT3G13490.1 52.632 95 45 0 372 466 273 367 6.81e-26 111
Msa1317440 AT4G21660.2 67.532 77 13 1 1 77 163 227 3.33e-25 109
Msa1317440 AT4G21660.1 90.741 54 5 0 1 54 163 216 3.67e-25 108
Msa1317440 AT3G16170.1 44.681 141 50 2 80 220 141 253 4.73e-25 108
Msa1317440 AT1G73180.2 47.959 98 27 2 304 379 386 481 1.78e-17 85.1
Msa1317440 AT1G73180.1 48.913 92 23 2 304 373 386 475 1.31e-16 82.8

Find 197 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATTCATGTTTCAGGTTT+TGG 0.075248 8_4:-18669153 Msa1317440:three_prime_UTR
TAAGTCCTCACTACAAAATT+TGG 0.119205 8_4:+18667781 None:intergenic
ATCTCCAACATTCATGTTTC+AGG 0.170623 8_4:-18669159 Msa1317440:three_prime_UTR
GATGAGGATGGAAGGTTTAA+AGG 0.197412 8_4:-18668650 Msa1317440:three_prime_UTR
AGCAACTGCATTGTCTTTCT+TGG 0.198801 8_4:+18667605 None:intergenic
TTCAATAGGGAGATGTTTAA+TGG 0.206830 8_4:-18667879 Msa1317440:three_prime_UTR
TGAAGAAAGTTCTAAACTTT+TGG 0.209770 8_4:-18667386 Msa1317440:three_prime_UTR
ATGGAACATGTTTATGAAAT+TGG 0.220857 8_4:-18670099 Msa1317440:CDS
GGGTGAGGATTGAAGAATTT+GGG 0.228037 8_4:+18674710 None:intergenic
AGAAATGGACATTCACAAAA+TGG 0.249033 8_4:-18672340 Msa1317440:CDS
TTCTTGCAGGGGAGCGGCTT+TGG 0.257739 8_4:-18673325 Msa1317440:intron
CATGTTGATTCTATGGAGTT+TGG 0.274376 8_4:+18674689 None:intergenic
AATACTTGACAACAACAATT+TGG 0.278361 8_4:+18671855 None:intergenic
TCTATTATTAATGTTGGTTC+TGG 0.280401 8_4:-18669340 Msa1317440:three_prime_UTR
GTAGAAACTTGGGTTGGTTT+TGG 0.284210 8_4:+18670788 None:intergenic
AATATATAATAAAATGAAAT+AGG 0.288228 8_4:+18671732 None:intergenic
AACAAATGCAAATTTAATTT+CGG 0.291040 8_4:+18667822 None:intergenic
GAGGCTGGTTCCAATTTGTT+AGG 0.292256 8_4:-18667505 Msa1317440:three_prime_UTR
TTACAGGAATAATGCTGATT+TGG 0.294830 8_4:-18669695 Msa1317440:intron
TGGGTGAGGATTGAAGAATT+TGG 0.313789 8_4:+18674709 None:intergenic
TTGAGTGGTGAGAATTATTA+AGG 0.316578 8_4:-18669961 Msa1317440:exon
AAACAAGGAAGATTAGAGTT+AGG 0.320485 8_4:-18674488 Msa1317440:five_prime_UTR
TATTAGGAACAGGCAGAATA+TGG 0.324406 8_4:+18672380 None:intergenic
GGTGATTGTCCCTAACAAAT+TGG 0.330595 8_4:+18667495 None:intergenic
GAGTTTGCATGTTGATTCTA+TGG 0.331195 8_4:+18674682 None:intergenic
TACAGTGTTGTTTGTGGAGT+TGG 0.334555 8_4:-18667429 Msa1317440:three_prime_UTR
CTCTTCTCAGAGGAATTATT+AGG 0.335182 8_4:+18672364 None:intergenic
ATGTTAAGAGCTTACGCTTT+GGG 0.338436 8_4:+18668592 None:intergenic
GGCACTGAATATGATTTATC+AGG 0.345491 8_4:-18674526 Msa1317440:five_prime_UTR
GAGTTTGGAGGGAGGTTCTA+AGG 0.346039 8_4:-18667631 Msa1317440:three_prime_UTR
GATGGAAGGTTTAAAGGCTT+TGG 0.349857 8_4:-18668644 Msa1317440:three_prime_UTR
TCCATGAAGATGTACCTTGC+AGG 0.355379 8_4:+18669626 None:intergenic
CTCAAGCAGCTGGTTGTTTG+TGG 0.355654 8_4:-18670123 Msa1317440:CDS
GACATGCTGTTATTCGATTT+AGG 0.356277 8_4:-18667461 Msa1317440:three_prime_UTR
CAACAACCTCTCCGCAATCT+TGG 0.359636 8_4:+18668690 None:intergenic
GAGTGTTGTCTTCATTCAAT+AGG 0.362606 8_4:-18667893 Msa1317440:three_prime_UTR
TAAGACTGTAGCTGCTATTC+AGG 0.365878 8_4:-18670705 Msa1317440:CDS
AACAAGGAAGATTAGAGTTA+GGG 0.366624 8_4:-18674487 Msa1317440:five_prime_UTR
AAAATCAAATATCATGCAAA+TGG 0.367440 8_4:-18669847 Msa1317440:three_prime_UTR
TCAAACCTTCTTCTTGTGCT+TGG 0.370945 8_4:-18671812 Msa1317440:CDS
GCCTTCTTCATTGGTCCTAC+AGG 0.371948 8_4:-18672056 Msa1317440:intron
GAAATGGACATTCACAAAAT+GGG 0.380131 8_4:-18672339 Msa1317440:CDS
CTTGGAACTTCCCTGCTTTG+TGG 0.383269 8_4:-18671794 Msa1317440:CDS
AAGTCCTCACTACAAAATTT+GGG 0.385657 8_4:+18667782 None:intergenic
AGAATTGTTAGAAATGATTC+AGG 0.387877 8_4:-18668849 Msa1317440:intron
TCCTCTGAGAAGAGTAGAAA+TGG 0.388853 8_4:-18672355 Msa1317440:CDS
ACAGCATGTCGCCCTCTTGT+AGG 0.389300 8_4:+18667474 None:intergenic
ATGTTGATTCTATGGAGTTT+GGG 0.389627 8_4:+18674690 None:intergenic
CATTCATAATATTATTCATA+AGG 0.396552 8_4:+18667753 None:intergenic
TGCAGCAGATCCTAAGTTGC+TGG 0.399151 8_4:-18673560 Msa1317440:CDS
GCCTGCAAGGTACATCTTCA+TGG 0.400385 8_4:-18669627 Msa1317440:three_prime_UTR
CCGGCAATCTTGTTTATCAT+AGG 0.401245 8_4:+18670228 None:intergenic
CCGAGAGAGACATGGGAAGA+AGG 0.401978 8_4:+18674751 None:intergenic
AGACAAATTGCCTTCTTCAT+TGG 0.402869 8_4:-18672065 Msa1317440:CDS
CAGTTGCTTGATGTGCTTAC+CGG 0.404409 8_4:-18667590 Msa1317440:three_prime_UTR
CGAGAGAGACATGGGAAGAA+GGG 0.406672 8_4:+18674752 None:intergenic
TCTCTATGTGATGAATAATT+CGG 0.408368 8_4:-18672730 Msa1317440:CDS
TCCTCCTACAGTGTTGTTTG+TGG 0.411414 8_4:-18667435 Msa1317440:three_prime_UTR
TCAGAGGAATTATTAGGAAC+AGG 0.412601 8_4:+18672370 None:intergenic
AAATCAAATATCATGCAAAT+GGG 0.412981 8_4:-18669846 Msa1317440:three_prime_UTR
GATGAATATGACCTACATTC+AGG 0.413598 8_4:-18669018 Msa1317440:three_prime_UTR
TAGACTTCACTCCACCCTTC+AGG 0.413847 8_4:-18669801 Msa1317440:intron
ACCGTCTGCGAATTTGTTGC+TGG 0.417231 8_4:-18672822 Msa1317440:CDS
GGAAGATTAGAGTTAGGGTT+TGG 0.421891 8_4:-18674482 Msa1317440:five_prime_UTR
CATTGCACATGTTCTGAGTA+TGG 0.431001 8_4:-18668911 Msa1317440:three_prime_UTR
ATTGAAATCCAGGGAAATCT+TGG 0.431539 8_4:-18672872 Msa1317440:intron
TGGACGTGCTGCTGCGCCAC+CGG 0.434564 8_4:+18670209 None:intergenic
CCTAACTTACTTGGTGACTC+TGG 0.436811 8_4:+18670971 None:intergenic
TAAACTATTTGCAGGCTGAT+TGG 0.439685 8_4:-18670997 Msa1317440:intron
TGCAGTTGGGTTGGCAGAAG+AGG 0.444560 8_4:+18670760 None:intergenic
CTTAATAAGATAAAATCATA+TGG 0.444688 8_4:+18669901 None:intergenic
GGAGTGAAGTCTATTTCAAT+AGG 0.446836 8_4:+18669811 None:intergenic
ATAAACTCTATTATTAATGT+TGG 0.455272 8_4:-18669346 Msa1317440:three_prime_UTR
TAATGACTACAACGACCTAA+TGG 0.455750 8_4:-18670001 Msa1317440:CDS
TAGGTCATATTCATCAGAAA+AGG 0.460102 8_4:+18669026 None:intergenic
TTCAAGCAATATCATTTCTA+CGG 0.466633 8_4:+18667405 None:intergenic
TAATGGGTCATTGTACTTCA+AGG 0.471047 8_4:-18671103 Msa1317440:CDS
GCTTTGGCAATCACCAATCC+TGG 0.472204 8_4:-18673309 Msa1317440:CDS
CCGAACTTGTGCATTCACTT+AGG 0.473843 8_4:+18669284 None:intergenic
TCAAGCAGCTGGTTGTTTGT+GGG 0.474857 8_4:-18670122 Msa1317440:CDS
AGTGTTGTCTTCATTCAATA+GGG 0.477044 8_4:-18667892 Msa1317440:three_prime_UTR
TGGTAAACAATTTAGAAATG+AGG 0.479474 8_4:-18670079 Msa1317440:CDS
CCTATGATAAACAAGATTGC+CGG 0.480935 8_4:-18670228 Msa1317440:CDS
TGCTCAGCTGCAATAATTGA+TGG 0.481250 8_4:-18674458 Msa1317440:five_prime_UTR
AGGCTGGTTCCAATTTGTTA+GGG 0.481872 8_4:-18667504 Msa1317440:three_prime_UTR
ATACTCGCGACTTGGCTTAG+TGG 0.485895 8_4:-18672798 Msa1317440:CDS
TTCTGGTGTGAGGAAAAGAA+TGG 0.487616 8_4:+18674787 None:intergenic
AAGTTCCAAGCACAAGAAGA+AGG 0.489149 8_4:+18671807 None:intergenic
GAGAGAGAGGGACACGTTCA+AGG 0.489746 8_4:+18674599 None:intergenic
GAAAATTTCTTCCAAGATTG+CGG 0.490605 8_4:-18668701 Msa1317440:three_prime_UTR
TTGCAATGCCACCACAAAGC+AGG 0.490757 8_4:+18671783 None:intergenic
AATCTTGGTGGAGCTCGAAT+AGG 0.490823 8_4:-18672857 Msa1317440:CDS
AAGAAGAAGGTTTGAAAGGA+TGG 0.493952 8_4:+18671820 None:intergenic
TTGCTGGAATACTCGCGACT+TGG 0.497164 8_4:-18672806 Msa1317440:CDS
CCTAAGTGAATGCACAAGTT+CGG 0.499139 8_4:-18669284 Msa1317440:three_prime_UTR
TTCCAAACACCTACCAGTCC+AGG 0.501998 8_4:+18673291 None:intergenic
CCTTCTTCCCATGTCTCTCT+CGG 0.503575 8_4:-18674751 Msa1317440:five_prime_UTR
TGAGCATTGGAGAAACGAAA+TGG 0.505403 8_4:-18667732 Msa1317440:three_prime_UTR
ACTCCTACCACAACAACATC+AGG 0.506236 8_4:+18673687 None:intergenic
ATGTGGTTCTTGCAGGGGAG+CGG 0.508751 8_4:-18673331 Msa1317440:intron
AGGGACACGTTCAAGGGAAG+AGG 0.509430 8_4:+18674606 None:intergenic
GATTCTATGGAGTTTGGGTG+AGG 0.512401 8_4:+18674695 None:intergenic
TATATCAACCTCTAGCTGAC+AGG 0.513541 8_4:-18669198 Msa1317440:three_prime_UTR
AGCTGCTTGAGATAAAGTTC+TGG 0.514028 8_4:+18670135 None:intergenic
TCATTGTGGTGAGCTACAAA+TGG 0.517376 8_4:+18670189 None:intergenic
TGTGGTGGCATTGCAAACCT+TGG 0.524276 8_4:-18671776 Msa1317440:CDS
GTTCAAGGGAAGAGGATAAG+AGG 0.531277 8_4:+18674614 None:intergenic
GGAACTTCCCTGCTTTGTGG+TGG 0.531729 8_4:-18671791 Msa1317440:CDS
TGAACTCAGGAGTATGTGTA+AGG 0.534167 8_4:+18670049 None:intergenic
AGAACTTTATCTCAAGCAGC+TGG 0.534987 8_4:-18670133 Msa1317440:CDS
ATGTGATGAATAATTCGGTT+CGG 0.538369 8_4:-18672725 Msa1317440:intron
AACACCTACCAGTCCAGGAT+TGG 0.539428 8_4:+18673296 None:intergenic
AAAACCTGAAACATGAATGT+TGG 0.543763 8_4:+18669155 None:intergenic
TGTGACCAATGCCTAGGTAC+AGG 0.544976 8_4:+18673508 None:intergenic
GTTCTGGCTTTAAGATGTTG+TGG 0.544981 8_4:-18669324 Msa1317440:three_prime_UTR
ATAATGCTGATTTGGTTATG+TGG 0.545874 8_4:-18669687 Msa1317440:three_prime_UTR
GATTGCTTGATGTGTGATCA+AGG 0.545966 8_4:-18668887 Msa1317440:three_prime_UTR
TTCAAAATGAACCTTACCTA+AGG 0.546225 8_4:-18672498 Msa1317440:CDS
TGTTACGCTCAGCGGTAATG+AGG 0.546564 8_4:+18667549 None:intergenic
AGAGAGAGGGACACGTTCAA+GGG 0.553027 8_4:+18674600 None:intergenic
TCAAACAAGAACCTCTTGCA+TGG 0.554165 8_4:-18674548 Msa1317440:five_prime_UTR
GGCAATCACCAATCCTGGAC+TGG 0.554841 8_4:-18673304 Msa1317440:intron
TGAGAGGGCCGAGAGAGACA+TGG 0.554946 8_4:+18674743 None:intergenic
TTAGTGTACAAAATCAGTGC+TGG 0.555279 8_4:+18672151 None:intergenic
ACCTGTAGGACCAATGAAGA+AGG 0.555735 8_4:+18672055 None:intergenic
TTAGAACCTCCCTCCAAACT+CGG 0.557286 8_4:+18667633 None:intergenic
GAGAGGGCCGAGAGAGACAT+GGG 0.558774 8_4:+18674744 None:intergenic
TCTGCATAGCTGAGTGCAAG+TGG 0.559278 8_4:+18672762 None:intergenic
ACAGATATTAGATTGTATGC+TGG 0.559718 8_4:-18672107 Msa1317440:CDS
GATGTTGTGGAAAGCGGTGA+AGG 0.561562 8_4:-18669311 Msa1317440:three_prime_UTR
TGCAATGCCACCACAAAGCA+GGG 0.561820 8_4:+18671784 None:intergenic
TCCACAAACAACACTGTAGG+AGG 0.562703 8_4:+18667434 None:intergenic
TCTCTATTATTACAGTTGGA+GGG 0.566642 8_4:-18671943 Msa1317440:intron
GCACAAGAAGAAGGTTTGAA+AGG 0.568007 8_4:+18671816 None:intergenic
GAAATCCAGGGAAATCTTGG+TGG 0.568219 8_4:-18672869 Msa1317440:intron
AAATCACAGGTAGTGAACTC+AGG 0.569165 8_4:+18670036 None:intergenic
TTGCTTCAGATGAGGATGGA+AGG 0.572189 8_4:-18668658 Msa1317440:three_prime_UTR
TCTATTCACGAACTCACAAA+GGG 0.572459 8_4:-18669877 Msa1317440:three_prime_UTR
CTCAAGACCTGATGTTGTTG+TGG 0.574621 8_4:-18673694 Msa1317440:intron
TTTGGGGCTAAGAGAGTGAG+AGG 0.574621 8_4:+18674727 None:intergenic
TGTGGTGGACGATATGCAGC+AGG 0.576118 8_4:+18670731 None:intergenic
ATAATATTATGAATGAGCAT+TGG 0.576428 8_4:-18667745 Msa1317440:three_prime_UTR
TCCAGCAACAAATTCGCAGA+CGG 0.581642 8_4:+18672821 None:intergenic
GGCACTTGCAGGAACTGCAT+TGG 0.583491 8_4:-18667917 Msa1317440:intron
CGTCTTGCTTCAGATGAGGA+TGG 0.585403 8_4:-18668662 Msa1317440:three_prime_UTR
GGTGAGGATTGAAGAATTTG+GGG 0.586947 8_4:+18674711 None:intergenic
TTGTGATTATTCCATCATGA+GGG 0.591225 8_4:+18674650 None:intergenic
ATATTCAGTGCCCATGCAAG+AGG 0.591294 8_4:+18674537 None:intergenic
CTGAATATGATTTATCAGGA+TGG 0.591889 8_4:-18674522 Msa1317440:five_prime_UTR
GTCTATTCACGAACTCACAA+AGG 0.592091 8_4:-18669878 Msa1317440:three_prime_UTR
TTCAGCTTTGTTACGCTCAG+CGG 0.592093 8_4:+18667541 None:intergenic
GCAGCTGGTTGTTTGTGGGA+TGG 0.593960 8_4:-18670118 Msa1317440:CDS
GGGCTTCTTAATGCAACATG+TGG 0.594840 8_4:-18671923 Msa1317440:CDS
TTTGTGATTATTCCATCATG+AGG 0.596174 8_4:+18674649 None:intergenic
CAAGGTGAAAATTGAGAGAG+AGG 0.597039 8_4:+18674586 None:intergenic
TTGGAACCAGCCTCCTCCCA+AGG 0.597641 8_4:+18667514 None:intergenic
GAGAGAGACATGGGAAGAAG+GGG 0.598055 8_4:+18674753 None:intergenic
CTAATTTCTCAAAGCCTGCA+AGG 0.598822 8_4:-18669640 Msa1317440:three_prime_UTR
TGTAGCTGCTATTCAGGCAG+AGG 0.598925 8_4:-18670699 Msa1317440:intron
TCACAAATAGACCTGAATGT+AGG 0.603433 8_4:+18669007 None:intergenic
GCTCAGCTGCAATAATTGAT+GGG 0.603788 8_4:-18674457 Msa1317440:intron
AAATGGACATTCACAAAATG+GGG 0.610443 8_4:-18672338 Msa1317440:CDS
GCGGCAATCGTATTCATGAC+CGG 0.611851 8_4:+18667571 None:intergenic
CAAACAAGAACCTCTTGCAT+GGG 0.612348 8_4:-18674547 Msa1317440:five_prime_UTR
TCCATTTCTACTCTTCTCAG+AGG 0.617031 8_4:+18672354 None:intergenic
CCGTACCTGTACCTAGGCAT+TGG 0.618440 8_4:-18673513 Msa1317440:CDS
TTATCTCAATGTGTTGCTAG+AGG 0.618737 8_4:-18669123 Msa1317440:three_prime_UTR
AATCAAATATCATGCAAATG+GGG 0.623882 8_4:-18669845 Msa1317440:three_prime_UTR
GGCTTCTTAATGCAACATGT+GGG 0.624011 8_4:-18671922 Msa1317440:CDS
ACTTTACGTCAAGTTCATTG+TGG 0.629848 8_4:+18670175 None:intergenic
AACACAAACCTGTCAGCTAG+AGG 0.631156 8_4:+18669190 None:intergenic
TACGCTCAGCGGTAATGAGG+CGG 0.632249 8_4:+18667552 None:intergenic
GATGTTTGACAAGTTATACC+AGG 0.635363 8_4:-18671079 Msa1317440:intron
TGATGTGTGATCAAGGCCCA+TGG 0.637261 8_4:-18668880 Msa1317440:three_prime_UTR
TTCAAACCGAGTTTGGAGGG+AGG 0.637516 8_4:-18667639 Msa1317440:three_prime_UTR
CTTTAAGATGTTGTGGAAAG+CGG 0.640083 8_4:-18669317 Msa1317440:three_prime_UTR
GCTACAGTCTTAGCATGTGG+TGG 0.640695 8_4:+18670716 None:intergenic
TGATAGCAATTATTATCCTG+AGG 0.652576 8_4:-18669591 Msa1317440:intron
AACTCCACAAACAACACTGT+AGG 0.655204 8_4:+18667431 None:intergenic
CTCGCGACTTGGCTTAGTGG+AGG 0.656754 8_4:-18672795 Msa1317440:CDS
TTGAATGCACTGCACCTGAA+GGG 0.657190 8_4:+18669787 None:intergenic
CCAATGCCTAGGTACAGGTA+CGG 0.657807 8_4:+18673513 None:intergenic
TAGGGACAATCACCTACAAG+AGG 0.660602 8_4:-18667486 Msa1317440:three_prime_UTR
GTAACACCGTACCTGTACCT+AGG 0.660864 8_4:-18673519 Msa1317440:CDS
TGGCATTGCAAACCTTGGAG+TGG 0.662345 8_4:-18671771 Msa1317440:CDS
AAGGTGAAAATTGAGAGAGA+GGG 0.672652 8_4:+18674587 None:intergenic
GCAGCTACAGTCTTAGCATG+TGG 0.674519 8_4:+18670713 None:intergenic
AATGCACTGCACCTGAAGGG+TGG 0.675869 8_4:+18669790 None:intergenic
ATGATAAACAAGATTGCCGG+TGG 0.677791 8_4:-18670225 Msa1317440:CDS
TGCTAGAGGCTATTGATCCG+AGG 0.679387 8_4:-18669109 Msa1317440:three_prime_UTR
ATATTGAGTACTGAAGATCA+TGG 0.680453 8_4:-18672448 Msa1317440:CDS
TGTACGTCTTGCTTCAGATG+AGG 0.681852 8_4:-18668666 Msa1317440:three_prime_UTR
TGTTGAGTTTGCAACTGCAG+TGG 0.689687 8_4:-18668618 Msa1317440:three_prime_UTR
AGGGACAATCACCTACAAGA+GGG 0.691250 8_4:-18667485 Msa1317440:three_prime_UTR
TTTCTTCCAAGATTGCGGAG+AGG 0.695206 8_4:-18668696 Msa1317440:three_prime_UTR
ATAACACAGAAAATGTTGAG+TGG 0.702673 8_4:-18669976 Msa1317440:CDS
TTGGGGCTAAGAGAGTGAGA+GGG 0.745435 8_4:+18674728 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTAATTATGTATTTT+TGG - chr8_4:18667840-18667859 Msa1317440:three_prime_UTR 10.0%
!! ATTTGAAAATTTCATATAAA+AGG + chr8_4:18669557-18669576 None:intergenic 10.0%
!! TATAAAATGAAAAATAACAA+AGG + chr8_4:18671680-18671699 None:intergenic 10.0%
!!! TTATAAAATCTATTGTATTT+TGG - chr8_4:18672392-18672411 Msa1317440:CDS 10.0%
!! AAACATACTTACAAAAAAAA+AGG + chr8_4:18667944-18667963 None:intergenic 15.0%
!!! TTTTTTTGTAAGTATGTTTT+TGG - chr8_4:18667945-18667964 Msa1317440:intron 15.0%
!!! ATTATCTTTGTTATATTGAT+TGG - chr8_4:18668894-18668913 Msa1317440:three_prime_UTR 15.0%
!!! TTATCTTTGTTATATTGATT+GGG - chr8_4:18668895-18668914 Msa1317440:three_prime_UTR 15.0%
!!! TCATTGATTAATGTTTAATT+TGG - chr8_4:18670121-18670140 Msa1317440:CDS 15.0%
!! TATAAAATATGGTCAAATAA+TGG - chr8_4:18670544-18670563 Msa1317440:intron 15.0%
!! AATAAAATCATTTCTTACAT+AGG - chr8_4:18671764-18671783 Msa1317440:CDS 15.0%
!! CTTAATAAGATAAAATCATA+TGG + chr8_4:18672236-18672255 None:intergenic 15.0%
!!! CATATGATTTTATCTTATTA+AGG - chr8_4:18672234-18672253 Msa1317440:intron 15.0%
!!! ATTTGTATTTTTATTGTTAC+AGG - chr8_4:18672423-18672442 Msa1317440:CDS 15.0%
!!! AATTTTAATCAACTTCAATA+GGG + chr8_4:18672744-18672763 None:intergenic 15.0%
!! ATAAACTCTATTATTAATGT+TGG - chr8_4:18672788-18672807 Msa1317440:CDS 15.0%
!!! AAAAATAATAAAGCATCAAA+TGG + chr8_4:18673952-18673971 None:intergenic 15.0%
!!! AACAAATGCAAATTTAATTT+CGG + chr8_4:18674315-18674334 None:intergenic 15.0%
!! CATTCATAATATTATTCATA+AGG + chr8_4:18674384-18674403 None:intergenic 15.0%
!! CTCATTCTTATTCTTAATTT+GGG + chr8_4:18667911-18667930 None:intergenic 20.0%
!! ACTCATTCTTATTCTTAATT+TGG + chr8_4:18667912-18667931 None:intergenic 20.0%
!! TAACTCAAACAAATAATCAA+AGG + chr8_4:18668234-18668253 None:intergenic 20.0%
!!! AGAATTAGTTTCAAATTGTT+GGG - chr8_4:18668482-18668501 Msa1317440:intron 20.0%
!! ATCTTATATATGTATGTATG+TGG - chr8_4:18668786-18668805 Msa1317440:intron 20.0%
!!! ATTTGTTTGGTGTTTTTTTT+TGG - chr8_4:18668971-18668990 Msa1317440:three_prime_UTR 20.0%
!! ATCAATCTGCTAAAAATTTA+AGG - chr8_4:18669135-18669154 Msa1317440:three_prime_UTR 20.0%
!! TTGAATACTTAGTATATTGT+TGG - chr8_4:18669162-18669181 Msa1317440:three_prime_UTR 20.0%
!! TGAATACTTAGTATATTGTT+GGG - chr8_4:18669163-18669182 Msa1317440:three_prime_UTR 20.0%
!! TCGTTTAGTCAAATTATTTA+TGG - chr8_4:18669238-18669257 Msa1317440:three_prime_UTR 20.0%
!!! ATATGAAATTTTCAAATAGC+TGG - chr8_4:18669560-18669579 Msa1317440:intron 20.0%
!!! ATCATATATACTTTTCACAA+AGG + chr8_4:18669606-18669625 None:intergenic 20.0%
!!! ACATTTTCAGCTTTTAAAAA+TGG - chr8_4:18669875-18669894 Msa1317440:three_prime_UTR 20.0%
!! ATGCTATTCAGTATAAAATA+TGG - chr8_4:18670533-18670552 Msa1317440:intron 20.0%
!! ATAATGGCTATAACTTAAAT+AGG - chr8_4:18670560-18670579 Msa1317440:intron 20.0%
!! TAATGGCTATAACTTAAATA+GGG - chr8_4:18670561-18670580 Msa1317440:intron 20.0%
!! AGAAATGAGCAAATAAAAAA+AGG + chr8_4:18670881-18670900 None:intergenic 20.0%
!!! ATCAAGATTTTTCACTATAA+TGG - chr8_4:18671014-18671033 Msa1317440:intron 20.0%
!!! TCAAGATTTTTCACTATAAT+GGG - chr8_4:18671015-18671034 Msa1317440:intron 20.0%
!! AAGAAATAGTAGAATAAACA+TGG + chr8_4:18671260-18671279 None:intergenic 20.0%
!! AAAATCAAATATCATGCAAA+TGG - chr8_4:18672287-18672306 Msa1317440:intron 20.0%
!! AAATCAAATATCATGCAAAT+GGG - chr8_4:18672288-18672307 Msa1317440:intron 20.0%
!!! GAATTTTAATCAACTTCAAT+AGG + chr8_4:18672745-18672764 None:intergenic 20.0%
!! TGAAAAAATTCAGTTAGATA+AGG + chr8_4:18673411-18673430 None:intergenic 20.0%
!!! TTAACATTTTTTCAACTTTG+TGG - chr8_4:18673558-18673577 Msa1317440:CDS 20.0%
!!! AGGTTATATGATCTTTTAAT+AGG - chr8_4:18673892-18673911 Msa1317440:intron 20.0%
!!! GGTTATATGATCTTTTAATA+GGG - chr8_4:18673893-18673912 Msa1317440:intron 20.0%
!!! GTTATATGATCTTTTAATAG+GGG - chr8_4:18673894-18673913 Msa1317440:intron 20.0%
!! ATAATATTATGAATGAGCAT+TGG - chr8_4:18674389-18674408 Msa1317440:intron 20.0%
!!! AATTTTTTTTTTCTGGTGTG+AGG + chr8_4:18667360-18667379 None:intergenic 25.0%
!!! AAGGGGAAATTTTTTTTTTC+TGG + chr8_4:18667367-18667386 None:intergenic 25.0%
! TGAATAAAAATGAAAACCCA+AGG + chr8_4:18667569-18667588 None:intergenic 25.0%
!!! AAGTTGTTTAAGTTGTTGTA+AGG - chr8_4:18667791-18667810 Msa1317440:three_prime_UTR 25.0%
! CAATTATACAAACATCTTGT+GGG + chr8_4:18668049-18668068 None:intergenic 25.0%
! TTGTATAATTGCCTGAATTA+AGG - chr8_4:18668058-18668077 Msa1317440:intron 25.0%
!! TTAACTAATCTTTTGAGCTT+TGG - chr8_4:18668160-18668179 Msa1317440:intron 25.0%
! AATAGTTATTTACGATCACA+AGG + chr8_4:18668260-18668279 None:intergenic 25.0%
! CAATGAAATCAGGAAAATAA+TGG + chr8_4:18668336-18668355 None:intergenic 25.0%
! AAAAAAGATGCAATGAAATC+AGG + chr8_4:18668346-18668365 None:intergenic 25.0%
!! CAGAATTAGTTTCAAATTGT+TGG - chr8_4:18668481-18668500 Msa1317440:intron 25.0%
! ATGAAACATCATTTGCATAA+CGG + chr8_4:18668526-18668545 None:intergenic 25.0%
!! TGTTTCATAATTTCGTTTTC+AGG - chr8_4:18668538-18668557 Msa1317440:intron 25.0%
!!! ATAATTTCGTTTTCAGGTTT+GGG - chr8_4:18668544-18668563 Msa1317440:intron 25.0%
!! ACAAAAGAGAAAATTTTTGC+AGG - chr8_4:18668646-18668665 Msa1317440:three_prime_UTR 25.0%
! CCTATAATAACTATCAAGTT+AGG + chr8_4:18668683-18668702 None:intergenic 25.0%
!! CCTAACTTGATAGTTATTAT+AGG - chr8_4:18668680-18668699 Msa1317440:three_prime_UTR 25.0%
! AATAAAAGAGAAACAACTCA+AGG + chr8_4:18668877-18668896 None:intergenic 25.0%
!!! TAATGCACAAGATATTTTTG+TGG - chr8_4:18669006-18669025 Msa1317440:three_prime_UTR 25.0%
!! TAGCAATTTTTCTCTGAATT+TGG - chr8_4:18669043-18669062 Msa1317440:three_prime_UTR 25.0%
! TCTCTATGTGATGAATAATT+CGG - chr8_4:18669404-18669423 Msa1317440:intron 25.0%
! ACGTTAAACAGATAAAAGAA+AGG + chr8_4:18669473-18669492 None:intergenic 25.0%
!! ATTTTCCATTGACATTATCT+TGG - chr8_4:18669529-18669548 Msa1317440:intron 25.0%
!!! CATTTGTTTTTCATATCCTT+TGG - chr8_4:18669947-18669966 Msa1317440:exon 25.0%
!! TTTTTCATATCCTTTGGATT+AGG - chr8_4:18669953-18669972 Msa1317440:exon 25.0%
!! GAACAATTTTATATACCTGT+AGG + chr8_4:18670096-18670115 None:intergenic 25.0%
! GTATTCTCTATTATTACAGT+TGG - chr8_4:18670187-18670206 Msa1317440:CDS 25.0%
! AATACTTGACAACAACAATT+TGG + chr8_4:18670282-18670301 None:intergenic 25.0%
! AAATAATTCAAGAACCAAAC+AGG + chr8_4:18670649-18670668 None:intergenic 25.0%
! TAAACCAAATATAGTAGTGA+TGG + chr8_4:18670710-18670729 None:intergenic 25.0%
!! TAAAAAAAGGAATGTTTTCG+TGG + chr8_4:18670868-18670887 None:intergenic 25.0%
! ATGAATCAGAAAACATGTTA+TGG - chr8_4:18670909-18670928 Msa1317440:intron 25.0%
! TGAATCAGAAAACATGTTAT+GGG - chr8_4:18670910-18670929 Msa1317440:intron 25.0%
! AATGAAAAATGCTTTCTTAG+TGG + chr8_4:18670968-18670987 None:intergenic 25.0%
!! TTTTGTTCTTTTTCCATTGA+AGG - chr8_4:18670991-18671010 Msa1317440:intron 25.0%
! AGAAACAATTAACAGATCAT+TGG + chr8_4:18671476-18671495 None:intergenic 25.0%
!!! GATTTTATTTCTCGATTATG+TGG + chr8_4:18671753-18671772 None:intergenic 25.0%
! AACAAACCTCCATAAAATTA+AGG + chr8_4:18671801-18671820 None:intergenic 25.0%
! ATGGAACATGTTTATGAAAT+TGG - chr8_4:18672035-18672054 Msa1317440:intron 25.0%
! TGGTAAACAATTTAGAAATG+AGG - chr8_4:18672055-18672074 Msa1317440:intron 25.0%
! ATAAGCCATATAAAAATCAC+AGG + chr8_4:18672114-18672133 None:intergenic 25.0%
! AATCAAATATCATGCAAATG+GGG - chr8_4:18672289-18672308 Msa1317440:intron 25.0%
!!! GTGGTTTTATTATTCTTCTA+TGG - chr8_4:18672466-18672485 Msa1317440:CDS 25.0%
!!! TCTATTATTAATGTTGGTTC+TGG - chr8_4:18672794-18672813 Msa1317440:CDS 25.0%
!! ACAATTCTGAATTTTTCCAT+GGG + chr8_4:18673273-18673292 None:intergenic 25.0%
!! AACAATTCTGAATTTTTCCA+TGG + chr8_4:18673274-18673293 None:intergenic 25.0%
! AGAATTGTTAGAAATGATTC+AGG - chr8_4:18673285-18673304 Msa1317440:intron 25.0%
! AAGTAGAAAATTAGAGAGTA+AGG - chr8_4:18673381-18673400 Msa1317440:intron 25.0%
! AGTAGAAAATTAGAGAGTAA+GGG - chr8_4:18673382-18673401 Msa1317440:intron 25.0%
!! GGGAAGTATAAATCAATATT+AGG - chr8_4:18673872-18673891 Msa1317440:intron 25.0%
!! AACAAAAAGCATAAAATTCC+TGG + chr8_4:18674106-18674125 None:intergenic 25.0%
!!! TTTGGTATTTTGATAAGATC+TGG - chr8_4:18674146-18674165 Msa1317440:intron 25.0%
!! AAGTTGAAGAACAAAGTTTT+TGG + chr8_4:18674182-18674201 None:intergenic 25.0%
! TTCAAGCAATATCATTTCTA+CGG + chr8_4:18674732-18674751 None:intergenic 25.0%
!!! TGAAGAAAGTTCTAAACTTT+TGG - chr8_4:18674748-18674767 Msa1317440:five_prime_UTR 25.0%
!! ATGTTGATTCTATGGAGTTT+GGG + chr8_4:18667447-18667466 None:intergenic 30.0%
TTGTGATTATTCCATCATGA+GGG + chr8_4:18667487-18667506 None:intergenic 30.0%
TTTGTGATTATTCCATCATG+AGG + chr8_4:18667488-18667507 None:intergenic 30.0%
CTGAATATGATTTATCAGGA+TGG - chr8_4:18667612-18667631 Msa1317440:three_prime_UTR 30.0%
AAACAAGGAAGATTAGAGTT+AGG - chr8_4:18667646-18667665 Msa1317440:three_prime_UTR 30.0%
AACAAGGAAGATTAGAGTTA+GGG - chr8_4:18667647-18667666 Msa1317440:three_prime_UTR 30.0%
GCAATTATACAAACATCTTG+TGG + chr8_4:18668050-18668069 None:intergenic 30.0%
TAACACACTCACAATATGAA+AGG + chr8_4:18668122-18668141 None:intergenic 30.0%
ATTCACATATTCCTTAAGAG+AGG + chr8_4:18668195-18668214 None:intergenic 30.0%
!! CATATTCTGAAGTTTACATC+AGG - chr8_4:18668301-18668320 Msa1317440:intron 30.0%
!!! TCATTGCATCTTTTTTTTGC+AGG - chr8_4:18668350-18668369 Msa1317440:intron 30.0%
!!! CATAATTTCGTTTTCAGGTT+TGG - chr8_4:18668543-18668562 Msa1317440:intron 30.0%
TGAAAACGATGAAGTCAATA+AGG - chr8_4:18668760-18668779 Msa1317440:intron 30.0%
ATTGAGGAGAATAAAAGTTG+AGG - chr8_4:18669099-18669118 Msa1317440:three_prime_UTR 30.0%
! TATTTATGGCATTGAAATCC+AGG - chr8_4:18669252-18669271 Msa1317440:three_prime_UTR 30.0%
! ATTTATGGCATTGAAATCCA+GGG - chr8_4:18669253-18669272 Msa1317440:three_prime_UTR 30.0%
ATGTGATGAATAATTCGGTT+CGG - chr8_4:18669409-18669428 Msa1317440:intron 30.0%
CTTGTGAACATTAAGAATTC+AGG - chr8_4:18669497-18669516 Msa1317440:intron 30.0%
TTCAAAATGAACCTTACCTA+AGG - chr8_4:18669636-18669655 Msa1317440:three_prime_UTR 30.0%
! ACATTTTTCTTCCTTAGGTA+AGG + chr8_4:18669650-18669669 None:intergenic 30.0%
TACCTAAGGAAGAAAAATGT+TGG - chr8_4:18669650-18669669 Msa1317440:three_prime_UTR 30.0%
!! ATATTGAGTACTGAAGATCA+TGG - chr8_4:18669686-18669705 Msa1317440:three_prime_UTR 30.0%
!! AAACTGAGAAGAGGTTTTAT+TGG + chr8_4:18669732-18669751 None:intergenic 30.0%
AATATGGAAAAACTGAGAAG+AGG + chr8_4:18669741-18669760 None:intergenic 30.0%
AGAAATGGACATTCACAAAA+TGG - chr8_4:18669794-18669813 Msa1317440:intron 30.0%
GAAATGGACATTCACAAAAT+GGG - chr8_4:18669795-18669814 Msa1317440:intron 30.0%
AAATGGACATTCACAAAATG+GGG - chr8_4:18669796-18669815 Msa1317440:intron 30.0%
! TTGATCTTTCGACATTTTTC+AGG + chr8_4:18669844-18669863 None:intergenic 30.0%
ACAGATATTAGATTGTATGC+TGG - chr8_4:18670027-18670046 Msa1317440:CDS 30.0%
TTCTCTATTATTACAGTTGG+AGG - chr8_4:18670190-18670209 Msa1317440:CDS 30.0%
TCTCTATTATTACAGTTGGA+GGG - chr8_4:18670191-18670210 Msa1317440:CDS 30.0%
! GTTGTCAAGTATTCTCTTTT+AGG - chr8_4:18670289-18670308 Msa1317440:intron 30.0%
! TTTCAAGTCTGGTAATAGTA+TGG - chr8_4:18670599-18670618 Msa1317440:intron 30.0%
!!! GCTAGATTAGTTTTTCATGT+TGG - chr8_4:18670621-18670640 Msa1317440:intron 30.0%
CTTTCCATCACTACTATATT+TGG - chr8_4:18670703-18670722 Msa1317440:CDS 30.0%
GAATGCATTTGTAGTTTCTT+CGG - chr8_4:18670768-18670787 Msa1317440:CDS 30.0%
TTCTTCGGAAAAACTAACAA+AGG - chr8_4:18670783-18670802 Msa1317440:CDS 30.0%
GAAAAATCTTGATCCTTCAA+TGG + chr8_4:18671007-18671026 None:intergenic 30.0%
ATTGTGTGTAAACTATTTGC+AGG - chr8_4:18671129-18671148 Msa1317440:intron 30.0%
CTTGAAGATTAAAAACCATC+AGG - chr8_4:18671227-18671246 Msa1317440:intron 30.0%
CCATAAAATTAAGGTCATCA+AGG + chr8_4:18671792-18671811 None:intergenic 30.0%
!! CCTTGATGACCTTAATTTTA+TGG - chr8_4:18671789-18671808 Msa1317440:CDS 30.0%
! TGATGACCTTAATTTTATGG+AGG - chr8_4:18671792-18671811 Msa1317440:CDS 30.0%
TGGAAGAAATTATAAGCAAC+TGG + chr8_4:18671845-18671864 None:intergenic 30.0%
CTGAAAGTAGTGAAAAGAAT+AGG + chr8_4:18671877-18671896 None:intergenic 30.0%
! CTATTCTTTTCACTACTTTC+AGG - chr8_4:18671875-18671894 Msa1317440:intron 30.0%
! CACTACCTGTGATTTTTATA+TGG - chr8_4:18672106-18672125 Msa1317440:CDS 30.0%
ATAACACAGAAAATGTTGAG+TGG - chr8_4:18672158-18672177 Msa1317440:CDS 30.0%
TTGAGTGGTGAGAATTATTA+AGG - chr8_4:18672173-18672192 Msa1317440:intron 30.0%
! TTACAGGAATAATGCTGATT+TGG - chr8_4:18672439-18672458 Msa1317440:CDS 30.0%
!! ATAATGCTGATTTGGTTATG+TGG - chr8_4:18672447-18672466 Msa1317440:CDS 30.0%
TGATAGCAATTATTATCCTG+AGG - chr8_4:18672543-18672562 Msa1317440:intron 30.0%
CTTAATGACACATTAATAGC+AGG + chr8_4:18672617-18672636 None:intergenic 30.0%
AAAACCTGAAACATGAATGT+TGG + chr8_4:18672982-18673001 None:intergenic 30.0%
!!! AACATTCATGTTTCAGGTTT+TGG - chr8_4:18672981-18673000 Msa1317440:intron 30.0%
!!! ACATTCATGTTTCAGGTTTT+GGG - chr8_4:18672982-18673001 Msa1317440:intron 30.0%
AGTTGCTACTGAAAAAATCA+TGG + chr8_4:18673075-18673094 None:intergenic 30.0%
!!! GATTTTTTCAGTAGCAACTT+AGG - chr8_4:18673076-18673095 Msa1317440:intron 30.0%
TAGGTCATATTCATCAGAAA+AGG + chr8_4:18673111-18673130 None:intergenic 30.0%
!! CAATAACTTGCCAACATTTT+TGG - chr8_4:18673195-18673214 Msa1317440:intron 30.0%
GAAAATTTCTTCCAAGATTG+CGG - chr8_4:18673433-18673452 Msa1317440:intron 30.0%
GAATCCAGAAACAAATTACT+TGG + chr8_4:18673612-18673631 None:intergenic 30.0%
AAAGCAAGATACTAAATACC+TGG + chr8_4:18673755-18673774 None:intergenic 30.0%
!!! ATGACCAAGGTTTTAAATCT+CGG - chr8_4:18673776-18673795 Msa1317440:intron 30.0%
! ATAACCGAGATTTAAAACCT+TGG + chr8_4:18673783-18673802 None:intergenic 30.0%
CTATTATTGTGCTTGTGATA+TGG - chr8_4:18673839-18673858 Msa1317440:intron 30.0%
! AAAAGCATAAAATTCCTGGT+GGG + chr8_4:18674102-18674121 None:intergenic 30.0%
! AAAAAGCATAAAATTCCTGG+TGG + chr8_4:18674103-18674122 None:intergenic 30.0%
!!! TTCTGCATACATGTTGATTT+TGG - chr8_4:18674128-18674147 Msa1317440:intron 30.0%
AGTGTTGTCTTCATTCAATA+GGG - chr8_4:18674242-18674261 Msa1317440:intron 30.0%
TTCAATAGGGAGATGTTTAA+TGG - chr8_4:18674255-18674274 Msa1317440:intron 30.0%
AAGTCCTCACTACAAAATTT+GGG + chr8_4:18674355-18674374 None:intergenic 30.0%
TAAGTCCTCACTACAAAATT+TGG + chr8_4:18674356-18674375 None:intergenic 30.0%
TAACAAAGCTGAAAAATCCT+TGG - chr8_4:18674603-18674622 Msa1317440:five_prime_UTR 30.0%
AACAAAGCTGAAAAATCCTT+GGG - chr8_4:18674604-18674623 Msa1317440:five_prime_UTR 30.0%
!! AACTTTTGGAAATTGTATGC+TGG - chr8_4:18674762-18674781 Msa1317440:five_prime_UTR 30.0%
!! CATGTTGATTCTATGGAGTT+TGG + chr8_4:18667448-18667467 None:intergenic 35.0%
!! GAGTTTGCATGTTGATTCTA+TGG + chr8_4:18667455-18667474 None:intergenic 35.0%
!! TCATTTTTGAACCCTCATGA+TGG - chr8_4:18667473-18667492 Msa1317440:three_prime_UTR 35.0%
AAGGTGAAAATTGAGAGAGA+GGG + chr8_4:18667550-18667569 None:intergenic 35.0%
! TCTCTCTCAATTTTCACCTT+GGG - chr8_4:18667550-18667569 Msa1317440:three_prime_UTR 35.0%
! GGCACTGAATATGATTTATC+AGG - chr8_4:18667608-18667627 Msa1317440:three_prime_UTR 35.0%
! ATGGTCTGAAGCAAAAAACA+AGG - chr8_4:18667631-18667650 Msa1317440:three_prime_UTR 35.0%
! AGTAGTGTTGTTAGAGTTTG+AGG - chr8_4:18667877-18667896 Msa1317440:three_prime_UTR 35.0%
AATTGCCTGAATTAAGGTGT+AGG - chr8_4:18668064-18668083 Msa1317440:intron 35.0%
TGTGAGTGTGTTATGATTCA+AGG - chr8_4:18668129-18668148 Msa1317440:intron 35.0%
GGAATGTAAATCCTCTCTTA+AGG - chr8_4:18668181-18668200 Msa1317440:intron 35.0%
TTCAAAAACACCAGCAACTT+AGG + chr8_4:18668587-18668606 None:intergenic 35.0%
AATGATGTAAGCATGTCTGA+TGG - chr8_4:18668705-18668724 Msa1317440:three_prime_UTR 35.0%
! TGTTGTGCACAAGATTTGTT+TGG - chr8_4:18668958-18668977 Msa1317440:three_prime_UTR 35.0%
!!! TGGTGTTTTTTTTTGGAGTG+AGG - chr8_4:18668978-18668997 Msa1317440:three_prime_UTR 35.0%
!! ACAAGATATTTTTGTGGCCT+TGG - chr8_4:18669012-18669031 Msa1317440:three_prime_UTR 35.0%
AGTCGAAACACAATGTATTG+AGG - chr8_4:18669083-18669102 Msa1317440:three_prime_UTR 35.0%
ATTGAAATCCAGGGAAATCT+TGG - chr8_4:18669262-18669281 Msa1317440:three_prime_UTR 35.0%
AGGTACCAAGATAATGTCAA+TGG + chr8_4:18669537-18669556 None:intergenic 35.0%
TATTAGGAACAGGCAGAATA+TGG + chr8_4:18669757-18669776 None:intergenic 35.0%
TCAGAGGAATTATTAGGAAC+AGG + chr8_4:18669767-18669786 None:intergenic 35.0%
CTCTTCTCAGAGGAATTATT+AGG + chr8_4:18669773-18669792 None:intergenic 35.0%
! ATCTTCGTATCAGTTTTCTG+AGG - chr8_4:18669910-18669929 Msa1317440:three_prime_UTR 35.0%
TTAGTGTACAAAATCAGTGC+TGG + chr8_4:18669986-18670005 None:intergenic 35.0%
!!! GCACTGATTTTGTACACTAA+CGG - chr8_4:18669986-18670005 Msa1317440:CDS 35.0%
!!! CACTGATTTTGTACACTAAC+GGG - chr8_4:18669987-18670006 Msa1317440:CDS 35.0%
AGACAAATTGCCTTCTTCAT+TGG - chr8_4:18670069-18670088 Msa1317440:CDS 35.0%
AAGAAGAAGGTTTGAAAGGA+TGG + chr8_4:18670317-18670336 None:intergenic 35.0%
TTATACTGAATAGCATGTCG+CGG + chr8_4:18670529-18670548 None:intergenic 35.0%
! TTTTCATGTTGGTACCTGTT+TGG - chr8_4:18670632-18670651 Msa1317440:intron 35.0%
TTCAATCATCACACTTGTGA+TGG - chr8_4:18670819-18670838 Msa1317440:intron 35.0%
! ATGGGAGAATATTTTGCTGA+TGG - chr8_4:18670928-18670947 Msa1317440:intron 35.0%
! TAATGGGTCATTGTACTTCA+AGG - chr8_4:18671031-18671050 Msa1317440:intron 35.0%
GATGTTTGACAAGTTATACC+AGG - chr8_4:18671055-18671074 Msa1317440:intron 35.0%
TAAACTATTTGCAGGCTGAT+TGG - chr8_4:18671137-18671156 Msa1317440:intron 35.0%
AAACATGGTAAAGAACCTGA+TGG + chr8_4:18671245-18671264 None:intergenic 35.0%
! AGAGGCTTTTGTAGAAACTT+GGG + chr8_4:18671359-18671378 None:intergenic 35.0%
! AAGAGGCTTTTGTAGAAACT+TGG + chr8_4:18671360-18671379 None:intergenic 35.0%
ACTTCAGCAATAAGTTTGCA+TGG - chr8_4:18671516-18671535 Msa1317440:intron 35.0%
!! ATAATGGATGGTGACACAAA+AGG + chr8_4:18671567-18671586 None:intergenic 35.0%
! GCGAAAGTCATAATAATGGA+TGG + chr8_4:18671579-18671598 None:intergenic 35.0%
CACAGCGAAAGTCATAATAA+TGG + chr8_4:18671583-18671602 None:intergenic 35.0%
TCTGATATGAGATGTGAAGT+TGG - chr8_4:18671632-18671651 Msa1317440:intron 35.0%
CTGATATGAGATGTGAAGTT+GGG - chr8_4:18671633-18671652 Msa1317440:intron 35.0%
TGATATGAGATGTGAAGTTG+GGG - chr8_4:18671634-18671653 Msa1317440:intron 35.0%
AGACCACTGTTAATAGATGA+GGG + chr8_4:18671718-18671737 None:intergenic 35.0%
AAAAGAATAGGTACGAGGAA+TGG + chr8_4:18671865-18671884 None:intergenic 35.0%
TAGTGAAAAGAATAGGTACG+AGG + chr8_4:18671870-18671889 None:intergenic 35.0%
CCTATGATAAACAAGATTGC+CGG - chr8_4:18671906-18671925 Msa1317440:intron 35.0%
ACTTTACGTCAAGTTCATTG+TGG + chr8_4:18671962-18671981 None:intergenic 35.0%
TAATGACTACAACGACCTAA+TGG - chr8_4:18672133-18672152 Msa1317440:CDS 35.0%
! TTTTCTGTGTTATCGCCATT+AGG + chr8_4:18672151-18672170 None:intergenic 35.0%
TCTATTCACGAACTCACAAA+GGG - chr8_4:18672257-18672276 Msa1317440:intron 35.0%
GGAGTGAAGTCTATTTCAAT+AGG + chr8_4:18672326-18672345 None:intergenic 35.0%
!! TGATCAACAAAAAGTACCTC+AGG + chr8_4:18672562-18672581 None:intergenic 35.0%
!! CTTTAAGATGTTGTGGAAAG+CGG - chr8_4:18672817-18672836 Msa1317440:CDS 35.0%
ATCTCCAACATTCATGTTTC+AGG - chr8_4:18672975-18672994 Msa1317440:intron 35.0%
! TTATCTCAATGTGTTGCTAG+AGG - chr8_4:18673011-18673030 Msa1317440:intron 35.0%
!! GTACAAAAGTCGTTTTACCT+CGG + chr8_4:18673045-18673064 None:intergenic 35.0%
GATGAATATGACCTACATTC+AGG - chr8_4:18673116-18673135 Msa1317440:intron 35.0%
TCACAAATAGACCTGAATGT+AGG + chr8_4:18673130-18673149 None:intergenic 35.0%
!!! AACTTGCCAACATTTTTGGT+TGG - chr8_4:18673199-18673218 Msa1317440:intron 35.0%
CAATGACCAACCAAAAATGT+TGG + chr8_4:18673208-18673227 None:intergenic 35.0%
ATGTTAAGAGCTTACGCTTT+GGG + chr8_4:18673545-18673564 None:intergenic 35.0%
AATGTTAAGAGCTTACGCTT+TGG + chr8_4:18673546-18673565 None:intergenic 35.0%
!! GCTTCCAAGTAATTTGTTTC+TGG - chr8_4:18673605-18673624 Msa1317440:intron 35.0%
TTGTGATATGGTCTCTATTC+AGG - chr8_4:18673851-18673870 Msa1317440:intron 35.0%
TGTGATATGGTCTCTATTCA+GGG - chr8_4:18673852-18673871 Msa1317440:intron 35.0%
AAAGCATAAAATTCCTGGTG+GGG + chr8_4:18674101-18674120 None:intergenic 35.0%
! CAACTTTTTATCTGCACTTG+TGG - chr8_4:18674196-18674215 Msa1317440:intron 35.0%
! GAGTGTTGTCTTCATTCAAT+AGG - chr8_4:18674241-18674260 Msa1317440:intron 35.0%
! TAGTCCCAAATTTTGTAGTG+AGG - chr8_4:18674348-18674367 Msa1317440:intron 35.0%
!! AGCATTTTTCAAACCGAGTT+TGG - chr8_4:18674488-18674507 Msa1317440:five_prime_UTR 35.0%
!! ATTTTTCAAACCGAGTTTGG+AGG - chr8_4:18674491-18674510 Msa1317440:five_prime_UTR 35.0%
!! TTTTTCAAACCGAGTTTGGA+GGG - chr8_4:18674492-18674511 Msa1317440:five_prime_UTR 35.0%
GACATGCTGTTATTCGATTT+AGG - chr8_4:18674673-18674692 Msa1317440:five_prime_UTR 35.0%
GGTGAGGATTGAAGAATTTG+GGG + chr8_4:18667426-18667445 None:intergenic 40.0%
GGGTGAGGATTGAAGAATTT+GGG + chr8_4:18667427-18667446 None:intergenic 40.0%
TGGGTGAGGATTGAAGAATT+TGG + chr8_4:18667428-18667447 None:intergenic 40.0%
CAAGGTGAAAATTGAGAGAG+AGG + chr8_4:18667551-18667570 None:intergenic 40.0%
! CTCTCTCTCAATTTTCACCT+TGG - chr8_4:18667549-18667568 Msa1317440:three_prime_UTR 40.0%
TCAAACAAGAACCTCTTGCA+TGG - chr8_4:18667586-18667605 Msa1317440:three_prime_UTR 40.0%
CAAACAAGAACCTCTTGCAT+GGG - chr8_4:18667587-18667606 Msa1317440:three_prime_UTR 40.0%
GGAAGATTAGAGTTAGGGTT+TGG - chr8_4:18667652-18667671 Msa1317440:three_prime_UTR 40.0%
TGCTCAGCTGCAATAATTGA+TGG - chr8_4:18667676-18667695 Msa1317440:three_prime_UTR 40.0%
GCTCAGCTGCAATAATTGAT+GGG - chr8_4:18667677-18667696 Msa1317440:three_prime_UTR 40.0%
!!! GTTCTGTTTTTGCTGATTGC+TGG - chr8_4:18667720-18667739 Msa1317440:three_prime_UTR 40.0%
ACACTCCTACACCTTAATTC+AGG + chr8_4:18668072-18668091 None:intergenic 40.0%
! TTGGGTATCCGCTTCTTTTA+AGG - chr8_4:18668500-18668519 Msa1317440:intron 40.0%
CATAACGGCCTTAAAAGAAG+CGG + chr8_4:18668511-18668530 None:intergenic 40.0%
ATTAGTACATCACTCACGCA+AGG + chr8_4:18668736-18668755 None:intergenic 40.0%
TGCGTGAGTGATGTACTAAT+AGG - chr8_4:18668736-18668755 Msa1317440:intron 40.0%
GCGTGAGTGATGTACTAATA+GGG - chr8_4:18668737-18668756 Msa1317440:intron 40.0%
TGTATGTATGTGGTTCTTGC+AGG - chr8_4:18668796-18668815 Msa1317440:intron 40.0%
GTATGTATGTGGTTCTTGCA+GGG - chr8_4:18668797-18668816 Msa1317440:intron 40.0%
TATGTATGTGGTTCTTGCAG+GGG - chr8_4:18668798-18668817 Msa1317440:intron 40.0%
ACTGGTAGGTGTTTGGAAAT+GGG - chr8_4:18668848-18668867 Msa1317440:intron 40.0%
AAATTGCTATATCTGCGCCA+AGG + chr8_4:18669032-18669051 None:intergenic 40.0%
! GAATTTGGTTCATTTGACCG+AGG - chr8_4:18669058-18669077 Msa1317440:three_prime_UTR 40.0%
! CGCCAACATTTTTCTTCCTT+AGG + chr8_4:18669655-18669674 None:intergenic 40.0%
! TCCTCTGAGAAGAGTAGAAA+TGG - chr8_4:18669779-18669798 Msa1317440:intron 40.0%
TCCATTTCTACTCTTCTCAG+AGG + chr8_4:18669783-18669802 None:intergenic 40.0%
TGGATCTTCACCTAATCCAA+AGG + chr8_4:18669966-18669985 None:intergenic 40.0%
GGCTTCTTAATGCAACATGT+GGG - chr8_4:18670212-18670231 Msa1317440:CDS 40.0%
GCACAAGAAGAAGGTTTGAA+AGG + chr8_4:18670321-18670340 None:intergenic 40.0%
TCAAACCTTCTTCTTGTGCT+TGG - chr8_4:18670322-18670341 Msa1317440:intron 40.0%
AAGTTCCAAGCACAAGAAGA+AGG + chr8_4:18670330-18670349 None:intergenic 40.0%
!!! CTTTTTTTTGCTCCACTCCA+AGG + chr8_4:18670378-18670397 None:intergenic 40.0%
CTTGGAGTGGAGCAAAAAAA+AGG - chr8_4:18670376-18670395 Msa1317440:intron 40.0%
ATTGTTTGCGAATGTCAGTG+AGG - chr8_4:18670467-18670486 Msa1317440:intron 40.0%
TAAATAGGGTGCAGACTTGA+TGG - chr8_4:18670575-18670594 Msa1317440:intron 40.0%
!!! GACTTGATGGTTTTCAAGTC+TGG - chr8_4:18670588-18670607 Msa1317440:intron 40.0%
ATTCGCGAAGATAGCGAATA+AGG + chr8_4:18670752-18670771 None:intergenic 40.0%
CTGATGTCACCTAACTTACT+TGG + chr8_4:18671175-18671194 None:intergenic 40.0%
! GAATACCCTGAACTTTTTGC+AGG - chr8_4:18671316-18671335 Msa1317440:intron 40.0%
CTTGACCTGCAAAAAGTTCA+GGG + chr8_4:18671324-18671343 None:intergenic 40.0%
!!! GTAGAAACTTGGGTTGGTTT+TGG + chr8_4:18671349-18671368 None:intergenic 40.0%
! GCTTTTGTAGAAACTTGGGT+TGG + chr8_4:18671355-18671374 None:intergenic 40.0%
TAAGACTGTAGCTGCTATTC+AGG - chr8_4:18671429-18671448 Msa1317440:intron 40.0%
GATATGAGATGTGAAGTTGG+GGG - chr8_4:18671635-18671654 Msa1317440:intron 40.0%
ATATGAGATGTGAAGTTGGG+GGG - chr8_4:18671636-18671655 Msa1317440:intron 40.0%
CATCCCTCATCTATTAACAG+TGG - chr8_4:18671712-18671731 Msa1317440:intron 40.0%
GAGACCACTGTTAATAGATG+AGG + chr8_4:18671719-18671738 None:intergenic 40.0%
! CCGGCAATCTTGTTTATCAT+AGG + chr8_4:18671909-18671928 None:intergenic 40.0%
ATGATAAACAAGATTGCCGG+TGG - chr8_4:18671909-18671928 Msa1317440:intron 40.0%
TCATTGTGGTGAGCTACAAA+TGG + chr8_4:18671948-18671967 None:intergenic 40.0%
AGCTGCTTGAGATAAAGTTC+TGG + chr8_4:18672002-18672021 None:intergenic 40.0%
AGAACTTTATCTCAAGCAGC+TGG - chr8_4:18672001-18672020 Msa1317440:intron 40.0%
! TGAACTCAGGAGTATGTGTA+AGG + chr8_4:18672088-18672107 None:intergenic 40.0%
AAATCACAGGTAGTGAACTC+AGG + chr8_4:18672101-18672120 None:intergenic 40.0%
GTCTATTCACGAACTCACAA+AGG - chr8_4:18672256-18672275 Msa1317440:intron 40.0%
CTAATTTCTCAAAGCCTGCA+AGG - chr8_4:18672494-18672513 Msa1317440:CDS 40.0%
!! GTTCTGGCTTTAAGATGTTG+TGG - chr8_4:18672810-18672829 Msa1317440:CDS 40.0%
CCTAAGTGAATGCACAAGTT+CGG - chr8_4:18672850-18672869 Msa1317440:CDS 40.0%
TATATCAACCTCTAGCTGAC+AGG - chr8_4:18672936-18672955 Msa1317440:intron 40.0%
! CATTGCACATGTTCTGAGTA+TGG - chr8_4:18673223-18673242 Msa1317440:intron 40.0%
GATTGCTTGATGTGTGATCA+AGG - chr8_4:18673247-18673266 Msa1317440:intron 40.0%
GATGAGGATGGAAGGTTTAA+AGG - chr8_4:18673484-18673503 Msa1317440:intron 40.0%
GATGGAAGGTTTAAAGGCTT+TGG - chr8_4:18673490-18673509 Msa1317440:CDS 40.0%
TCTATCTAGCATTAGATGCC+AGG - chr8_4:18673734-18673753 Msa1317440:exon 40.0%
GTATCTTGCTTTCATGACCA+AGG - chr8_4:18673763-18673782 Msa1317440:five_prime_UTR 40.0%
! ATGCTTTGAGTGTAGTGAAC+TGG - chr8_4:18673981-18674000 Msa1317440:intron 40.0%
!!! ATATTTTTTGCTTCCCCACC+AGG - chr8_4:18674085-18674104 Msa1317440:intron 40.0%
!! TGAGCATTGGAGAAACGAAA+TGG - chr8_4:18674402-18674421 Msa1317440:intron 40.0%
AGCAACTGCATTGTCTTTCT+TGG + chr8_4:18674532-18674551 None:intergenic 40.0%
AAAGCTGAAAAATCCTTGGG+AGG - chr8_4:18674607-18674626 Msa1317440:five_prime_UTR 40.0%
!! AGGCTGGTTCCAATTTGTTA+GGG - chr8_4:18674630-18674649 Msa1317440:five_prime_UTR 40.0%
GGTGATTGTCCCTAACAAAT+TGG + chr8_4:18674642-18674661 None:intergenic 40.0%
AACTCCACAAACAACACTGT+AGG + chr8_4:18674706-18674725 None:intergenic 40.0%
!! TACAGTGTTGTTTGTGGAGT+TGG - chr8_4:18674705-18674724 Msa1317440:five_prime_UTR 40.0%
GATTCTATGGAGTTTGGGTG+AGG + chr8_4:18667442-18667461 None:intergenic 45.0%
GTTCAAGGGAAGAGGATAAG+AGG + chr8_4:18667523-18667542 None:intergenic 45.0%
ATATTCAGTGCCCATGCAAG+AGG + chr8_4:18667600-18667619 None:intergenic 45.0%
CTCAAGACCTGATGTTGTTG+TGG - chr8_4:18668440-18668459 Msa1317440:intron 45.0%
AGACCTGATGTTGTTGTGGT+AGG - chr8_4:18668444-18668463 Msa1317440:intron 45.0%
ACTCCTACCACAACAACATC+AGG + chr8_4:18668450-18668469 None:intergenic 45.0%
! CTCTTTTGTGACCAATGCCT+AGG + chr8_4:18668635-18668654 None:intergenic 45.0%
GACTGGTAGGTGTTTGGAAA+TGG - chr8_4:18668847-18668866 Msa1317440:intron 45.0%
CATTGTGTTTCGACTGTCCT+CGG + chr8_4:18669078-18669097 None:intergenic 45.0%
GAAATCCAGGGAAATCTTGG+TGG - chr8_4:18669265-18669284 Msa1317440:three_prime_UTR 45.0%
AATCTTGGTGGAGCTCGAAT+AGG - chr8_4:18669277-18669296 Msa1317440:three_prime_UTR 45.0%
TCCAGCAACAAATTCGCAGA+CGG + chr8_4:18669316-18669335 None:intergenic 45.0%
ACCTGTAGGACCAATGAAGA+AGG + chr8_4:18670082-18670101 None:intergenic 45.0%
GGGCTTCTTAATGCAACATG+TGG - chr8_4:18670211-18670230 Msa1317440:CDS 45.0%
AGTTCGAGATACTACTGACC+TGG + chr8_4:18671076-18671095 None:intergenic 45.0%
! CCTAACTTACTTGGTGACTC+TGG + chr8_4:18671166-18671185 None:intergenic 45.0%
CCAGAGTCACCAAGTAAGTT+AGG - chr8_4:18671163-18671182 Msa1317440:intron 45.0%
CCTTGACCTGCAAAAAGTTC+AGG + chr8_4:18671325-18671344 None:intergenic 45.0%
! CCTGAACTTTTTGCAGGTCA+AGG - chr8_4:18671322-18671341 Msa1317440:intron 45.0%
! AGGTTTTTGTGCAGTTGGGT+TGG + chr8_4:18671386-18671405 None:intergenic 45.0%
! CAGCAGGTTTTTGTGCAGTT+GGG + chr8_4:18671390-18671409 None:intergenic 45.0%
GCAACTGGCATCAGAATACT+TGG + chr8_4:18671830-18671849 None:intergenic 45.0%
TCAAGCAGCTGGTTGTTTGT+GGG - chr8_4:18672012-18672031 Msa1317440:intron 45.0%
TCCATGAAGATGTACCTTGC+AGG + chr8_4:18672511-18672530 None:intergenic 45.0%
CCGAACTTGTGCATTCACTT+AGG + chr8_4:18672853-18672872 None:intergenic 45.0%
AACACAAACCTGTCAGCTAG+AGG + chr8_4:18672947-18672966 None:intergenic 45.0%
TTTCTTCCAAGATTGCGGAG+AGG - chr8_4:18673438-18673457 Msa1317440:intron 45.0%
TGTACGTCTTGCTTCAGATG+AGG - chr8_4:18673468-18673487 Msa1317440:intron 45.0%
TTGCTTCAGATGAGGATGGA+AGG - chr8_4:18673476-18673495 Msa1317440:intron 45.0%
TGTTGAGTTTGCAACTGCAG+TGG - chr8_4:18673516-18673535 Msa1317440:CDS 45.0%
TTAGAACCTCCCTCCAAACT+CGG + chr8_4:18674504-18674523 None:intergenic 45.0%
CAGTTGCTTGATGTGCTTAC+CGG - chr8_4:18674544-18674563 Msa1317440:five_prime_UTR 45.0%
!! TTCAGCTTTGTTACGCTCAG+CGG + chr8_4:18674596-18674615 None:intergenic 45.0%
! GAGGCTGGTTCCAATTTGTT+AGG - chr8_4:18674629-18674648 Msa1317440:five_prime_UTR 45.0%
TAGGGACAATCACCTACAAG+AGG - chr8_4:18674648-18674667 Msa1317440:five_prime_UTR 45.0%
AGGGACAATCACCTACAAGA+GGG - chr8_4:18674649-18674668 Msa1317440:five_prime_UTR 45.0%
!! TCCTCCTACAGTGTTGTTTG+TGG - chr8_4:18674699-18674718 Msa1317440:five_prime_UTR 45.0%
TCCACAAACAACACTGTAGG+AGG + chr8_4:18674703-18674722 None:intergenic 45.0%
!! AATATATAATAAAATGAAAT+AGG + chr8_4:18670405-18670424 None:intergenic 5.0%
GAGAGAGACATGGGAAGAAG+GGG + chr8_4:18667384-18667403 None:intergenic 50.0%
CGAGAGAGACATGGGAAGAA+GGG + chr8_4:18667385-18667404 None:intergenic 50.0%
CCTTCTTCCCATGTCTCTCT+CGG - chr8_4:18667383-18667402 Msa1317440:three_prime_UTR 50.0%
TTGGGGCTAAGAGAGTGAGA+GGG + chr8_4:18667409-18667428 None:intergenic 50.0%
! TTTGGGGCTAAGAGAGTGAG+AGG + chr8_4:18667410-18667429 None:intergenic 50.0%
AGAGAGAGGGACACGTTCAA+GGG + chr8_4:18667537-18667556 None:intergenic 50.0%
TGCAGCAGATCCTAAGTTGC+TGG - chr8_4:18668574-18668593 Msa1317440:intron 50.0%
GTAACACCGTACCTGTACCT+AGG - chr8_4:18668615-18668634 Msa1317440:three_prime_UTR 50.0%
CCAATGCCTAGGTACAGGTA+CGG + chr8_4:18668624-18668643 None:intergenic 50.0%
TGTGACCAATGCCTAGGTAC+AGG + chr8_4:18668629-18668648 None:intergenic 50.0%
GCTTTGGCAATCACCAATCC+TGG - chr8_4:18668825-18668844 Msa1317440:intron 50.0%
!! ATCACCAATCCTGGACTGGT+AGG - chr8_4:18668834-18668853 Msa1317440:intron 50.0%
AACACCTACCAGTCCAGGAT+TGG + chr8_4:18668841-18668860 None:intergenic 50.0%
!! ATCCTGGACTGGTAGGTGTT+TGG - chr8_4:18668841-18668860 Msa1317440:intron 50.0%
TTCCAAACACCTACCAGTCC+AGG + chr8_4:18668846-18668865 None:intergenic 50.0%
!! ACCGTCTGCGAATTTGTTGC+TGG - chr8_4:18669312-18669331 Msa1317440:three_prime_UTR 50.0%
TTGCTGGAATACTCGCGACT+TGG - chr8_4:18669328-18669347 Msa1317440:three_prime_UTR 50.0%
! ATACTCGCGACTTGGCTTAG+TGG - chr8_4:18669336-18669355 Msa1317440:three_prime_UTR 50.0%
TCTGCATAGCTGAGTGCAAG+TGG + chr8_4:18669375-18669394 None:intergenic 50.0%
GCCTTCTTCATTGGTCCTAC+AGG - chr8_4:18670078-18670097 Msa1317440:CDS 50.0%
CTTGGAACTTCCCTGCTTTG+TGG - chr8_4:18670340-18670359 Msa1317440:intron 50.0%
TGCAATGCCACCACAAAGCA+GGG + chr8_4:18670353-18670372 None:intergenic 50.0%
TTGCAATGCCACCACAAAGC+AGG + chr8_4:18670354-18670373 None:intergenic 50.0%
TGTGGTGGCATTGCAAACCT+TGG - chr8_4:18670358-18670377 Msa1317440:intron 50.0%
TGGCATTGCAAACCTTGGAG+TGG - chr8_4:18670363-18670382 Msa1317440:intron 50.0%
GAATGTCAGTGAGGTTAGCG+TGG - chr8_4:18670476-18670495 Msa1317440:intron 50.0%
! GCAGCAGGTTTTTGTGCAGT+TGG + chr8_4:18671391-18671410 None:intergenic 50.0%
GCTACAGTCTTAGCATGTGG+TGG + chr8_4:18671421-18671440 None:intergenic 50.0%
GCAGCTACAGTCTTAGCATG+TGG + chr8_4:18671424-18671443 None:intergenic 50.0%
TGTAGCTGCTATTCAGGCAG+AGG - chr8_4:18671435-18671454 Msa1317440:intron 50.0%
ATGTGAAGTTGGGGGGAGAA+GGG - chr8_4:18671643-18671662 Msa1317440:intron 50.0%
CTCAAGCAGCTGGTTGTTTG+TGG - chr8_4:18672011-18672030 Msa1317440:intron 50.0%
GCCTGCAAGGTACATCTTCA+TGG - chr8_4:18672507-18672526 Msa1317440:CDS 50.0%
GATGTTGTGGAAAGCGGTGA+AGG - chr8_4:18672823-18672842 Msa1317440:CDS 50.0%
TGCTAGAGGCTATTGATCCG+AGG - chr8_4:18673025-18673044 Msa1317440:intron 50.0%
TGATGTGTGATCAAGGCCCA+TGG - chr8_4:18673254-18673273 Msa1317440:intron 50.0%
CAACAACCTCTCCGCAATCT+TGG + chr8_4:18673447-18673466 None:intergenic 50.0%
CGTCTTGCTTCAGATGAGGA+TGG - chr8_4:18673472-18673491 Msa1317440:intron 50.0%
TTCAAACCGAGTTTGGAGGG+AGG - chr8_4:18674495-18674514 Msa1317440:five_prime_UTR 50.0%
GAGTTTGGAGGGAGGTTCTA+AGG - chr8_4:18674503-18674522 Msa1317440:five_prime_UTR 50.0%
GCGGCAATCGTATTCATGAC+CGG + chr8_4:18674566-18674585 None:intergenic 50.0%
TGTTACGCTCAGCGGTAATG+AGG + chr8_4:18674588-18674607 None:intergenic 50.0%
GCTGAAAAATCCTTGGGAGG+AGG - chr8_4:18674610-18674629 Msa1317440:five_prime_UTR 50.0%
AAAAATCCTTGGGAGGAGGC+TGG - chr8_4:18674614-18674633 Msa1317440:five_prime_UTR 50.0%
CCGAGAGAGACATGGGAAGA+AGG + chr8_4:18667386-18667405 None:intergenic 55.0%
AGGGACACGTTCAAGGGAAG+AGG + chr8_4:18667531-18667550 None:intergenic 55.0%
GAGAGAGAGGGACACGTTCA+AGG + chr8_4:18667538-18667557 None:intergenic 55.0%
CCGTACCTGTACCTAGGCAT+TGG - chr8_4:18668621-18668640 Msa1317440:three_prime_UTR 55.0%
ATGTGGTTCTTGCAGGGGAG+CGG - chr8_4:18668803-18668822 Msa1317440:intron 55.0%
GGCAATCACCAATCCTGGAC+TGG - chr8_4:18668830-18668849 Msa1317440:intron 55.0%
GAGCTCCACCAAGATTTCCC+TGG + chr8_4:18669273-18669292 None:intergenic 55.0%
GGAACTTCCCTGCTTTGTGG+TGG - chr8_4:18670343-18670362 Msa1317440:intron 55.0%
GTCAGTGAGGTTAGCGTGGA+TGG - chr8_4:18670480-18670499 Msa1317440:intron 55.0%
!! TGCAGTTGGGTTGGCAGAAG+AGG + chr8_4:18671377-18671396 None:intergenic 55.0%
!! TGTGGTGGACGATATGCAGC+AGG + chr8_4:18671406-18671425 None:intergenic 55.0%
GATGTGAAGTTGGGGGGAGA+AGG - chr8_4:18671642-18671661 Msa1317440:intron 55.0%
GCAGCTGGTTGTTTGTGGGA+TGG - chr8_4:18672016-18672035 Msa1317440:intron 55.0%
TCTGCACTTGTGGCACTTGC+AGG - chr8_4:18674206-18674225 Msa1317440:intron 55.0%
GGCACTTGCAGGAACTGCAT+TGG - chr8_4:18674217-18674236 Msa1317440:intron 55.0%
TACGCTCAGCGGTAATGAGG+CGG + chr8_4:18674585-18674604 None:intergenic 55.0%
ACAGCATGTCGCCCTCTTGT+AGG + chr8_4:18674663-18674682 None:intergenic 55.0%
GAGAGGGCCGAGAGAGACAT+GGG + chr8_4:18667393-18667412 None:intergenic 60.0%
TGAGAGGGCCGAGAGAGACA+TGG + chr8_4:18667394-18667413 None:intergenic 60.0%
TTCTTGCAGGGGAGCGGCTT+TGG - chr8_4:18668809-18668828 Msa1317440:intron 60.0%
! CTCGCGACTTGGCTTAGTGG+AGG - chr8_4:18669339-18669358 Msa1317440:three_prime_UTR 60.0%
TTGGAACCAGCCTCCTCCCA+AGG + chr8_4:18674623-18674642 None:intergenic 60.0%
! TGGACGTGCTGCTGCGCCAC+CGG + chr8_4:18671928-18671947 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 18667349 18674807 18667349 ID=Msa1317440;Name=Msa1317440
chr8_4 mRNA 18667349 18674807 18667349 ID=Msa1317440-mRNA-1;Parent=Msa1317440;Name=Msa1317440-mRNA-1;_AED=0.22;_eAED=0.22;_QI=389|0.68|0.64|1|0.56|0.70|17|1505|470
chr8_4 exon 18667349 18667928 18667349 ID=Msa1317440-mRNA-1:exon:6945;Parent=Msa1317440-mRNA-1
chr8_4 exon 18668607 18668724 18668607 ID=Msa1317440-mRNA-1:exon:6944;Parent=Msa1317440-mRNA-1
chr8_4 exon 18668850 18669375 18668850 ID=Msa1317440-mRNA-1:exon:6943;Parent=Msa1317440-mRNA-1
chr8_4 exon 18669592 18669711 18669592 ID=Msa1317440-mRNA-1:exon:6942;Parent=Msa1317440-mRNA-1
chr8_4 exon 18669802 18670259 18669802 ID=Msa1317440-mRNA-1:exon:6941;Parent=Msa1317440-mRNA-1
chr8_4 exon 18670700 18670818 18670700 ID=Msa1317440-mRNA-1:exon:6940;Parent=Msa1317440-mRNA-1
chr8_4 exon 18670981 18671005 18670981 ID=Msa1317440-mRNA-1:exon:6939;Parent=Msa1317440-mRNA-1
chr8_4 exon 18671080 18671143 18671080 ID=Msa1317440-mRNA-1:exon:6938;Parent=Msa1317440-mRNA-1
chr8_4 exon 18671732 18671880 18671732 ID=Msa1317440-mRNA-1:exon:6937;Parent=Msa1317440-mRNA-1
chr8_4 exon 18671915 18671950 18671915 ID=Msa1317440-mRNA-1:exon:6936;Parent=Msa1317440-mRNA-1
chr8_4 exon 18672057 18672181 18672057 ID=Msa1317440-mRNA-1:exon:6935;Parent=Msa1317440-mRNA-1
chr8_4 exon 18672293 18672540 18672293 ID=Msa1317440-mRNA-1:exon:6934;Parent=Msa1317440-mRNA-1
chr8_4 exon 18672726 18672882 18672726 ID=Msa1317440-mRNA-1:exon:6933;Parent=Msa1317440-mRNA-1
chr8_4 exon 18673305 18673338 18673305 ID=Msa1317440-mRNA-1:exon:6932;Parent=Msa1317440-mRNA-1
chr8_4 exon 18673489 18673596 18673489 ID=Msa1317440-mRNA-1:exon:6931;Parent=Msa1317440-mRNA-1
chr8_4 exon 18673695 18673784 18673695 ID=Msa1317440-mRNA-1:exon:6930;Parent=Msa1317440-mRNA-1
chr8_4 exon 18674458 18674807 18674458 ID=Msa1317440-mRNA-1:exon:6929;Parent=Msa1317440-mRNA-1
chr8_4 five_prime_UTR 18674458 18674807 18674458 ID=Msa1317440-mRNA-1:five_prime_utr;Parent=Msa1317440-mRNA-1
chr8_4 five_prime_UTR 18673746 18673784 18673746 ID=Msa1317440-mRNA-1:five_prime_utr;Parent=Msa1317440-mRNA-1
chr8_4 CDS 18673695 18673745 18673695 ID=Msa1317440-mRNA-1:cds;Parent=Msa1317440-mRNA-1
chr8_4 CDS 18673489 18673596 18673489 ID=Msa1317440-mRNA-1:cds;Parent=Msa1317440-mRNA-1
chr8_4 CDS 18673305 18673338 18673305 ID=Msa1317440-mRNA-1:cds;Parent=Msa1317440-mRNA-1
chr8_4 CDS 18672726 18672882 18672726 ID=Msa1317440-mRNA-1:cds;Parent=Msa1317440-mRNA-1
chr8_4 CDS 18672293 18672540 18672293 ID=Msa1317440-mRNA-1:cds;Parent=Msa1317440-mRNA-1
chr8_4 CDS 18672057 18672181 18672057 ID=Msa1317440-mRNA-1:cds;Parent=Msa1317440-mRNA-1
chr8_4 CDS 18671915 18671950 18671915 ID=Msa1317440-mRNA-1:cds;Parent=Msa1317440-mRNA-1
chr8_4 CDS 18671732 18671880 18671732 ID=Msa1317440-mRNA-1:cds;Parent=Msa1317440-mRNA-1
chr8_4 CDS 18671080 18671143 18671080 ID=Msa1317440-mRNA-1:cds;Parent=Msa1317440-mRNA-1
chr8_4 CDS 18670981 18671005 18670981 ID=Msa1317440-mRNA-1:cds;Parent=Msa1317440-mRNA-1
chr8_4 CDS 18670700 18670818 18670700 ID=Msa1317440-mRNA-1:cds;Parent=Msa1317440-mRNA-1
chr8_4 CDS 18669963 18670259 18669963 ID=Msa1317440-mRNA-1:cds;Parent=Msa1317440-mRNA-1
chr8_4 three_prime_UTR 18669802 18669962 18669802 ID=Msa1317440-mRNA-1:three_prime_utr;Parent=Msa1317440-mRNA-1
chr8_4 three_prime_UTR 18669592 18669711 18669592 ID=Msa1317440-mRNA-1:three_prime_utr;Parent=Msa1317440-mRNA-1
chr8_4 three_prime_UTR 18668850 18669375 18668850 ID=Msa1317440-mRNA-1:three_prime_utr;Parent=Msa1317440-mRNA-1
chr8_4 three_prime_UTR 18668607 18668724 18668607 ID=Msa1317440-mRNA-1:three_prime_utr;Parent=Msa1317440-mRNA-1
chr8_4 three_prime_UTR 18667349 18667928 18667349 ID=Msa1317440-mRNA-1:three_prime_utr;Parent=Msa1317440-mRNA-1
Gene Sequence

>Msa1317440

ATGAAAATTGCTGAACTAGAACAAGTTAGCTCAAGACCTGATGTTGTTGTGGTTTGGGATGCTACTGCAGCAGATCCTAAGTTGCTGGTGTTTTTGAAATCTTATCGTAACACCGTACCTGTACCTAGGCATTGGTCACAAAAGAGAAAATTTTTGCAGGGGAGCGGCTTTGGCAATCACCAATCCTGGACTGGGAAATCTTGGTGGAGCTCGAATAGGAATAGTTGCGAAACCGTCTGCGAATTTGTTGCTGGAATACTCGCGACTTGGCTTAGTGGAGGTGTTGTTGTTCCACTTGCACTCAGCTATGCAGAAGTAGAGCTTCTCTATGTGATGAATAATTCGGTTCGTATATATGATGTAAATATGCTTCAAAATGAACCTTACCTAAGGAAGAAAAATGTTGGCGATGTGTCTGCTATATTGAGTACTGAAGATCATGGTGAATTAATGCAAAGCATTGCCAATAAAACCTCTTCTCAGTTTTTCCATATTCTGCCTGTTCCTAATAATTCCTCTGAGAAGAGTAGAAATGGACATTCACAAAATGGGGAAATTGATGCAGACAGAATTTTCCTGAAAAATGTCGAAAGATCAAGTGAAGATCCAGCACTGATTTTGTACACTAACGGGACAACAGTTAAAAACAAACAGATATTAGATTGTATGCTGGTTGTTACTTCAAATTTTGCAGACAAATTGCCTTCTTCATTGGTCCTACAGTTGGAGGGCTTCTTAATGCAACATGTGGGAATATTACAACCAAATTGTTGTTGTCAAGTATTCTCTTTTAGGTTCCATCCTTTCAAACCTTCTTCTTGTGCTTGGAACTTCCCTGCTTTGTGGTGGCATTGCAAACCTTGGAGTGGAGCAAAAAAAAGGAAGCCTATTTCATTTTATTATATATTGATCAAGATTTTTCACTATAATGGGTCATTGTACTTCAAGGAGATGTTTGACAAGTTATACCAGGCTGATTGGAAACCAGAGTCACCAAGTCAAGGACCAAAACCAACCCAAGTTTCTACAAAAGCCTCTTCTGCCAACCCAACTGCACAAAAACCTGCTGCATATCGTCCACCACATGCTAAGACTGTAGCTGCTATTCAGGCAGAGGTTGAAACACCTATGATAAACAAGATTGCCGGTGGCGCAGCAGCACGTCCATTTGTAGCTCACCACAATGAACTTGACGTAAAGTTGTTCATGAGAATTGCTCCAGAACTTTATCTCAAGCAGCTGGTTGTTTGTGGGATGGAACATGTTTATGAAATTGGTAAACAATTTAGAAATGAGGATATAGACCTTACACATACTCCTGAGTTCACTACCTGTGATTTTTATATGGCTTATAATGACTACAACGACCTAATGGCGATAACACAGAAAATGTTGAGTGGTGAGAATTATTAA
Protein sequence

>Msa1317440

MKIAELEQVSSRPDVVVVWDATAADPKLLVFLKSYRNTVPVPRHWSQKRKFLQGSGFGNHQSWTGKSWWSSNRNSCETVCEFVAGILATWLSGGVVVPLALSYAEVELLYVMNNSVRIYDVNMLQNEPYLRKKNVGDVSAILSTEDHGELMQSIANKTSSQFFHILPVPNNSSEKSRNGHSQNGEIDADRIFLKNVERSSEDPALILYTNGTTVKNKQILDCMLVVTSNFADKLPSSLVLQLEGFLMQHVGILQPNCCCQVFSFRFHPFKPSSCAWNFPALWWHCKPWSGAKKRKPISFYYILIKIFHYNGSLYFKEMFDKLYQADWKPESPSQGPKPTQVSTKASSANPTAQKPAAYRPPHAKTVAAIQAEVETPMINKIAGGAAARPFVAHHNELDVKLFMRIAPELYLKQLVVCGMEHVYEIGKQFRNEDIDLTHTPEFTTCDFYMAYNDYNDLMAITQKMLSGENY*