Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757000 | XP_039690575.1 | 70.222 | 225 | 58 | 3 | 64 | 285 | 129 | 347 | 1.90e-97 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757000 | A0A2Z6PEX1 | 45.500 | 200 | 60 | 2 | 98 | 292 | 7 | 162 | 4.96e-39 | 151 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0757000 | Msa0894920 | 0.807919 | 3.994677e-50 | -8.615850e-47 |
| Msa0757000 | Msa0912010 | 0.898950 | 3.207230e-77 | -8.615850e-47 |
| Msa0757000 | Msa1421620 | 0.816146 | 6.428386e-52 | -8.615850e-47 |
| Msa0431770 | Msa0757000 | 0.817816 | 2.710292e-52 | -8.615850e-47 |
| Msa0539050 | Msa0757000 | 0.864493 | 1.168667e-64 | -8.615850e-47 |
| Msa0539060 | Msa0757000 | 0.886505 | 3.227277e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757000 | MtrunA17_Chr5g0414621 | 51.370 | 146 | 65 | 2 | 143 | 285 | 672 | 814 | 2.71e-31 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 137 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAAGGGATGCATCTTATT+TGG | 0.145304 | 5_2:-11649119 | Msa0757000:CDS |
| AATGAAAGATGAGTTATTTA+AGG | 0.170608 | 5_2:-11648521 | Msa0757000:CDS |
| TTTGGATCGATATGAGATTT+TGG | 0.204928 | 5_2:+11652352 | None:intergenic |
| CGTGGATTCTGGTGAGTTTC+CGG | 0.249887 | 5_2:+11652294 | None:intergenic |
| TTTGGTGAATGAGGAGTTTC+CGG | 0.266357 | 5_2:+11652370 | None:intergenic |
| TAACAACATACATCATTTCT+TGG | 0.279472 | 5_2:+11649428 | None:intergenic |
| GGAGTTTCCGGCGTGGATTC+TGG | 0.294811 | 5_2:+11652283 | None:intergenic |
| CTTTCTCTCGGTTCTCTTTG+TGG | 0.297046 | 5_2:-11652458 | None:intergenic |
| CGGTGGTGATGGTGAGTTTC+CGG | 0.303819 | 5_2:+11652393 | None:intergenic |
| AAATGCAAAGGAGTCAGTTT+TGG | 0.306992 | 5_2:-11650106 | Msa0757000:five_prime_UTR |
| AATATCACGGGTCACAGTTT+GGG | 0.329052 | 5_2:+11648606 | None:intergenic |
| GATTGTTGTTTATGTTGTTT+TGG | 0.331155 | 5_2:-11648329 | Msa0757000:three_prime_UTR |
| TTTGGATCCACAAATCGATT+TGG | 0.332643 | 5_2:+11652334 | None:intergenic |
| TAATATCACGGGTCACAGTT+TGG | 0.333241 | 5_2:+11648605 | None:intergenic |
| TGAGTTATTTAAGGAATTTA+CGG | 0.348018 | 5_2:-11648512 | Msa0757000:CDS |
| TGAAGGGATGCATCTTATTT+GGG | 0.365880 | 5_2:-11649118 | Msa0757000:CDS |
| AAAGGTACGGCAGGAAGTTT+AGG | 0.369105 | 5_2:-11648907 | Msa0757000:CDS |
| AGAATTGAAAGAGGAGTTTC+CGG | 0.372257 | 5_2:+11652271 | None:intergenic |
| CCGGCGATGGTGAAAGGTTC+CGG | 0.374658 | 5_2:+11652412 | None:intergenic |
| AGTGTTCATTCAACTCTCTA+TGG | 0.375638 | 5_2:-11649213 | Msa0757000:CDS |
| CGCCAACCACTATAGTTAGA+TGG | 0.379771 | 5_2:+11649237 | None:intergenic |
| AGACAAAATCATGGACTGCC+TGG | 0.392320 | 5_2:-11649177 | Msa0757000:CDS |
| TTCCAACCACTATAGTTAGA+TGG | 0.392617 | 5_2:+11649880 | None:intergenic |
| GGCGGTGGTGAGAATCGATT+TGG | 0.393735 | 5_2:+11652433 | None:intergenic |
| TGACCCGTGATATTATATCT+AGG | 0.394681 | 5_2:-11648597 | Msa0757000:CDS |
| GCAGAGAGGCATGCAACATA+TGG | 0.411033 | 5_2:-11649472 | Msa0757000:CDS |
| GCAGAGAGGCATGCAACATA+TGG | 0.411033 | 5_2:-11649664 | Msa0757000:CDS |
| GCGGAATCGAAGAATCGATT+TGG | 0.414410 | 5_2:+11652316 | None:intergenic |
| TCATGAGATCCTTCAGTTGA+AGG | 0.418974 | 5_2:+11648796 | None:intergenic |
| AAGATGAACAACGCTACTTT+GGG | 0.421905 | 5_2:-11648868 | Msa0757000:CDS |
| ATCAGATTGCCTCAAATTGT+TGG | 0.422473 | 5_2:+11650078 | None:intergenic |
| GATACTATGAAATTGCTTGA+TGG | 0.426175 | 5_2:-11648297 | Msa0757000:three_prime_UTR |
| GAAGATGAACAACGCTACTT+TGG | 0.426393 | 5_2:-11648869 | Msa0757000:CDS |
| AACTCATCTTTCATTTCACT+TGG | 0.429996 | 5_2:+11648529 | None:intergenic |
| TTGGAATTTCCAACAATTTG+AGG | 0.433907 | 5_2:-11650087 | Msa0757000:five_prime_UTR |
| GACATATGTGGTGGTGCTGC+TGG | 0.433948 | 5_2:+11649989 | None:intergenic |
| CAACTGAAGGATCTCATGAT+AGG | 0.443027 | 5_2:-11648792 | Msa0757000:CDS |
| ACTGAAGTTGAGTTGTTAGT+TGG | 0.448820 | 5_2:+11648820 | None:intergenic |
| TAATCTTTCCACTTCTCAGC+TGG | 0.451939 | 5_2:+11648553 | None:intergenic |
| AAAACAAAAGGCAGAAGCTT+GGG | 0.452699 | 5_2:-11650258 | Msa0757000:five_prime_UTR |
| CCCTAGCCAGTCCATGATCT+TGG | 0.459900 | 5_2:+11649620 | None:intergenic |
| GACATATTATACTAGACCTA+TGG | 0.462503 | 5_2:-11648402 | Msa0757000:three_prime_UTR |
| GATACAAATGATTCAAGAAA+AGG | 0.462903 | 5_2:-11649072 | Msa0757000:intron |
| GTGAAATTCAGAATTGAAAG+AGG | 0.466324 | 5_2:+11652262 | None:intergenic |
| TCTTGCATCTTCAATATCGT+TGG | 0.468809 | 5_2:+11650165 | None:intergenic |
| GACAAAATCATGGACTGCCT+GGG | 0.472346 | 5_2:-11649176 | Msa0757000:CDS |
| CCTCTATGTATATAGGTGTC+CGG | 0.473813 | 5_2:-11650288 | Msa0757000:intron |
| ATTAGAAATTGTCAAGGGAG+AGG | 0.482467 | 5_2:-11649288 | Msa0757000:CDS |
| TCTCAACCATCTAACTATAG+TGG | 0.489438 | 5_2:-11649243 | Msa0757000:CDS |
| TATCGATCCAAATCGATTTG+TGG | 0.490681 | 5_2:-11652341 | Msa0757000:five_prime_UTR |
| TTCTGAATTTCACAATTCTA+CGG | 0.494142 | 5_2:-11652252 | Msa0757000:intron |
| ATATGGGATGAGGCAGGGGT+TGG | 0.496425 | 5_2:-11649647 | Msa0757000:CDS |
| GCATCTTCAATATCGTTGGA+TGG | 0.496833 | 5_2:+11650169 | None:intergenic |
| CAAAACAAAAGGCAGAAGCT+TGG | 0.497300 | 5_2:-11650259 | Msa0757000:five_prime_UTR |
| GATGAATATAATGCAAGAAA+AGG | 0.497952 | 5_2:-11649595 | Msa0757000:intron |
| GATGAATATAATGCAAGAAA+AGG | 0.497952 | 5_2:-11649793 | Msa0757000:intron |
| CATTATTTGTAACAGCTGCT+TGG | 0.502691 | 5_2:+11650134 | None:intergenic |
| CAACATATGGGATGAGGCAG+GGG | 0.502945 | 5_2:-11649459 | Msa0757000:CDS |
| CAACATATGGGATGAGGCAG+GGG | 0.502945 | 5_2:-11649651 | Msa0757000:CDS |
| GAGTTTCCGGCGATGGTGAA+AGG | 0.509283 | 5_2:+11652406 | None:intergenic |
| ATGGTGAAAGGTTCCGGCGG+TGG | 0.512922 | 5_2:+11652418 | None:intergenic |
| TCACCATTCAACAGGAAAAG+AGG | 0.514218 | 5_2:-11649312 | Msa0757000:intron |
| TATAATGATAGTGAAGATGA+AGG | 0.519013 | 5_2:-11649135 | Msa0757000:CDS |
| TCCGGAATGACCAAAACAAA+AGG | 0.522248 | 5_2:-11650270 | Msa0757000:five_prime_UTR |
| ACAGAACCATCTAACTATAG+TGG | 0.523549 | 5_2:-11649886 | Msa0757000:intron |
| GGGTTGGATGACCAAGATCA+TGG | 0.525821 | 5_2:-11649631 | Msa0757000:CDS |
| GTTGATAAAAGACAAAATCA+TGG | 0.526060 | 5_2:-11649829 | Msa0757000:CDS |
| GAAGTTGAGTTGTTAGTTGG+TGG | 0.526674 | 5_2:+11648823 | None:intergenic |
| TTAGATGGTTGAGAAGGCTT+CGG | 0.526734 | 5_2:+11649252 | None:intergenic |
| TTCATTCCACTCTCTACGGA+AGG | 0.529717 | 5_2:-11649852 | Msa0757000:CDS |
| CAGAGAGGCATGCAACATAT+GGG | 0.531859 | 5_2:-11649471 | Msa0757000:CDS |
| CAGAGAGGCATGCAACATAT+GGG | 0.531859 | 5_2:-11649663 | Msa0757000:CDS |
| GTGTTCATTCAACTCTCTAT+GGG | 0.533675 | 5_2:-11649212 | Msa0757000:CDS |
| TGATGGTGAGTTTCCGGCGA+TGG | 0.533993 | 5_2:+11652399 | None:intergenic |
| AGTGTTCATTCCACTCTCTA+CGG | 0.534982 | 5_2:-11649856 | Msa0757000:CDS |
| GGAGTTTCCGGCGGTGGTGA+TGG | 0.535980 | 5_2:+11652382 | None:intergenic |
| TGCAACATATGGGATGAGGC+AGG | 0.538030 | 5_2:-11649461 | Msa0757000:CDS |
| TGCAACATATGGGATGAGGC+AGG | 0.538030 | 5_2:-11649653 | Msa0757000:CDS |
| GTTGATAAAAGACAAAATCA+TGG | 0.538431 | 5_2:-11649186 | Msa0757000:CDS |
| GGAAAGAACACTAATTTCAA+AGG | 0.540384 | 5_2:-11650680 | Msa0757000:five_prime_UTR |
| GAATGAGGAGTTTCCGGCGG+TGG | 0.540480 | 5_2:+11652376 | None:intergenic |
| TGCCTACTCCAGCTGAGAAG+TGG | 0.541113 | 5_2:-11648561 | Msa0757000:CDS |
| CATCTTCAATATCGTTGGAT+GGG | 0.545308 | 5_2:+11650170 | None:intergenic |
| AACCATCTAACTATAGTGGT+TGG | 0.548366 | 5_2:-11649882 | Msa0757000:CDS |
| GACCCGTGATATTATATCTA+GGG | 0.548986 | 5_2:-11648596 | Msa0757000:CDS |
| AGAGGAATTAGAAATTGTCA+AGG | 0.549374 | 5_2:-11649294 | Msa0757000:CDS |
| CTACTTTGGGTTCATTCCCA+CGG | 0.550189 | 5_2:-11648855 | Msa0757000:CDS |
| AATGCAACAAAAGGTACGGC+AGG | 0.551052 | 5_2:-11648916 | Msa0757000:CDS |
| CACCCTAGATATAATATCAC+GGG | 0.552020 | 5_2:+11648594 | None:intergenic |
| GACAAAATCATGGACTGACT+AGG | 0.553575 | 5_2:-11649819 | Msa0757000:CDS |
| AATCGATTCTTCGATTCCGC+CGG | 0.559487 | 5_2:-11652313 | Msa0757000:five_prime_UTR |
| ACAAAATCATGGACTGACTA+GGG | 0.561304 | 5_2:-11649818 | Msa0757000:CDS |
| TTCATTCAACTCTCTATGGG+AGG | 0.562260 | 5_2:-11649209 | Msa0757000:CDS |
| CCGGAACCTTTCACCATCGC+CGG | 0.562625 | 5_2:-11652412 | Msa0757000:five_prime_UTR |
| CCAAGATCATGGACTGGCTA+GGG | 0.563308 | 5_2:-11649620 | Msa0757000:CDS |
| ACCAAGATCATGGACTGGCT+AGG | 0.567510 | 5_2:-11649621 | Msa0757000:CDS |
| GATGGTTGAGAAGGCTTCGG+TGG | 0.567603 | 5_2:+11649255 | None:intergenic |
| ATCAACCCTTCCGTAGAGAG+TGG | 0.568561 | 5_2:+11649846 | None:intergenic |
| CTATAGTTAGATGGTTGAGA+AGG | 0.571661 | 5_2:+11649246 | None:intergenic |
| ATCTCATATTCAGATGAACT+AGG | 0.572114 | 5_2:+11648349 | None:intergenic |
| TCATTCAACTCTCTATGGGA+GGG | 0.574330 | 5_2:-11649208 | Msa0757000:CDS |
| CAAAGGAGTCAGTGATCCAC+CGG | 0.575661 | 5_2:-11650035 | Msa0757000:five_prime_UTR |
| GCAACATATGGGATGAGGCA+GGG | 0.578384 | 5_2:-11649460 | Msa0757000:CDS |
| GCAACATATGGGATGAGGCA+GGG | 0.578384 | 5_2:-11649652 | Msa0757000:CDS |
| GGCATGCAACATATGGGATG+AGG | 0.578560 | 5_2:-11649465 | Msa0757000:CDS |
| GGCATGCAACATATGGGATG+AGG | 0.578560 | 5_2:-11649657 | Msa0757000:CDS |
| GAGGAATTAGAAATTGTCAA+GGG | 0.578776 | 5_2:-11649293 | Msa0757000:CDS |
| GTACATGATTGAGAAGGCTC+CGG | 0.579007 | 5_2:+11650016 | None:intergenic |
| AACCATCTAACTATAGTGGT+TGG | 0.581730 | 5_2:-11649239 | Msa0757000:CDS |
| TTCCACTTCTCAGCTGGAGT+AGG | 0.583500 | 5_2:+11648559 | None:intergenic |
| CATGATTGAGAAGGCTCCGG+TGG | 0.586358 | 5_2:+11650019 | None:intergenic |
| ATATCACGGGTCACAGTTTG+GGG | 0.587701 | 5_2:+11648607 | None:intergenic |
| AAACTCACCATCACCACCGC+CGG | 0.588528 | 5_2:-11652389 | Msa0757000:five_prime_UTR |
| GAGAAAAGTTATATCTGTTG+AGG | 0.597798 | 5_2:-11648770 | Msa0757000:CDS |
| GCATAACATTCATCAGCCCC+AGG | 0.599662 | 5_2:+11649159 | None:intergenic |
| TCTCATATTCAGATGAACTA+GGG | 0.602494 | 5_2:+11648350 | None:intergenic |
| AAATCGATTCTCACCACCGC+CGG | 0.605703 | 5_2:-11652431 | Msa0757000:five_prime_UTR |
| ATAATGATAGTGAAGATGAA+GGG | 0.606353 | 5_2:-11649134 | Msa0757000:CDS |
| ACTTCAGTACCTTCAACTGA+AGG | 0.614576 | 5_2:-11648805 | Msa0757000:CDS |
| ACTAATTTCAAAGGTAACTG+AGG | 0.618344 | 5_2:-11650671 | Msa0757000:five_prime_UTR |
| TCATTCCACTCTCTACGGAA+GGG | 0.627878 | 5_2:-11649851 | Msa0757000:CDS |
| GGATGACCAAGATCATGGAC+TGG | 0.628479 | 5_2:-11649626 | Msa0757000:CDS |
| ACAAAATCATGGACTGCCTG+GGG | 0.638168 | 5_2:-11649175 | Msa0757000:CDS |
| TTGGTGGATCAGTAGACCGT+GGG | 0.641476 | 5_2:+11648839 | None:intergenic |
| TCACCCTAGATATAATATCA+CGG | 0.642680 | 5_2:+11648593 | None:intergenic |
| TTTCAAAGGTAACTGAGGAG+AGG | 0.646378 | 5_2:-11650666 | Msa0757000:five_prime_UTR |
| GGACTAGTACATGATTGAGA+AGG | 0.652444 | 5_2:+11650010 | None:intergenic |
| GGATTCTGGTGAGTTTCCGG+CGG | 0.659639 | 5_2:+11652297 | None:intergenic |
| GTTGGTGGATCAGTAGACCG+TGG | 0.668860 | 5_2:+11648838 | None:intergenic |
| GGTGAATGAGGAGTTTCCGG+CGG | 0.675533 | 5_2:+11652373 | None:intergenic |
| TATATACAGCTTCAGCAGAG+AGG | 0.676750 | 5_2:-11649486 | Msa0757000:intron |
| TATATACAGCTTCAGCAGAG+AGG | 0.676750 | 5_2:-11649678 | Msa0757000:intron |
| TGAAAGAGGAGTTTCCGGCG+TGG | 0.706239 | 5_2:+11652276 | None:intergenic |
| GCGATGGTGAAAGGTTCCGG+CGG | 0.733662 | 5_2:+11652415 | None:intergenic |
| AAACTCACCAGAATCCACGC+CGG | 0.741151 | 5_2:-11652290 | Msa0757000:five_prime_UTR |
| GTGGAAAATGACATATGTGG+TGG | 0.772660 | 5_2:+11649980 | None:intergenic |
| CCTGTGGAAAATGACATATG+TGG | 0.780447 | 5_2:+11649977 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGAATTTCTTATTATTTC+AGG | - | chr5_2:11650047-11650066 | Msa0757000:five_prime_UTR | 15.0% |
| !! | CAAAATAATTGTGTTATATA+TGG | - | chr5_2:11651008-11651027 | Msa0757000:intron | 15.0% |
| !! | CAAAATAATTGTGTTATATA+TGG | - | chr5_2:11651008-11651027 | Msa0757000:intron | 15.0% |
| !! | GTTTATCAACAATAAAAATT+GGG | + | chr5_2:11651730-11651749 | None:intergenic | 15.0% |
| !! | TGTTTATCAACAATAAAAAT+TGG | + | chr5_2:11651731-11651750 | None:intergenic | 15.0% |
| !! | TCCTAAAAATAAATTATACA+AGG | + | chr5_2:11652282-11652301 | None:intergenic | 15.0% |
| !! | CTACTATTAAATAATCTGTT+TGG | - | chr5_2:11649471-11649490 | Msa0757000:CDS | 20.0% |
| !! | AACAAAGAAACTTTCTTATT+TGG | - | chr5_2:11649511-11649530 | Msa0757000:intron | 20.0% |
| !! | ATAAAATACATGTTCAACAT+TGG | - | chr5_2:11649591-11649610 | Msa0757000:intron | 20.0% |
| !! | ATTCTGTAAATATTCTCTTA+AGG | - | chr5_2:11650158-11650177 | Msa0757000:five_prime_UTR | 20.0% |
| !! | TAGAGGAAAATAATTTAACA+CGG | + | chr5_2:11650446-11650465 | None:intergenic | 20.0% |
| !!! | TTATTTTCCTCTATGTATAT+AGG | - | chr5_2:11650453-11650472 | Msa0757000:intron | 20.0% |
| !! | AATAATGTGAAAAAATGCAA+AGG | - | chr5_2:11650630-11650649 | Msa0757000:five_prime_UTR | 20.0% |
| !! | AATAACGTGAAAAAATACAA+AGG | - | chr5_2:11650696-11650715 | Msa0757000:intron | 20.0% |
| !!! | TTTTCTTGCATTATATTCAT+CGG | + | chr5_2:11650956-11650975 | None:intergenic | 20.0% |
| !! | ACTGAAGTTATTATATCTAA+AGG | - | chr5_2:11650985-11651004 | Msa0757000:intron | 20.0% |
| !!! | TTTTCTTGCATTATATTCAT+CGG | + | chr5_2:11650956-11650975 | None:intergenic | 20.0% |
| !! | ACTGAAGTTATTATATCTAA+AGG | - | chr5_2:11650985-11651004 | Msa0757000:intron | 20.0% |
| !!! | ATTGATTCTAATTAATGATG+TGG | - | chr5_2:11651392-11651411 | Msa0757000:intron | 20.0% |
| !!! | TGTGAATTTTAAGTGATTTA+TGG | - | chr5_2:11652043-11652062 | Msa0757000:intron | 20.0% |
| !! | AAATATCAAGTGTTAATATC+AGG | + | chr5_2:11652084-11652103 | None:intergenic | 20.0% |
| !! | AATGAAAGATGAGTTATTTA+AGG | - | chr5_2:11652227-11652246 | Msa0757000:intron | 20.0% |
| !! | TGAGTTATTTAAGGAATTTA+CGG | - | chr5_2:11652236-11652255 | Msa0757000:intron | 20.0% |
| !!! | GCCTTGTATAATTTATTTTT+AGG | - | chr5_2:11652278-11652297 | Msa0757000:five_prime_UTR | 20.0% |
| ! | TTCTGAATTTCACAATTCTA+CGG | - | chr5_2:11648496-11648515 | Msa0757000:CDS | 25.0% |
| !! | TAATTTCAAGCAAACTTTTC+AGG | - | chr5_2:11648547-11648566 | Msa0757000:CDS | 25.0% |
| !! | TTGATTTTATCAGCTTGAAT+CGG | - | chr5_2:11648579-11648598 | Msa0757000:CDS | 25.0% |
| !!! | ATATGATTTGATTGATTCGA+AGG | - | chr5_2:11648656-11648675 | Msa0757000:intron | 25.0% |
| !! | AATACTTTTCTGCTAAGAAA+TGG | + | chr5_2:11648953-11648972 | None:intergenic | 25.0% |
| ! | CTACTTAGAGTAAGTTTATA+TGG | + | chr5_2:11648989-11649008 | None:intergenic | 25.0% |
| ! | GCACTAAAAACTTATAATCA+TGG | - | chr5_2:11649069-11649088 | Msa0757000:intron | 25.0% |
| !!! | GCTAATATATTAGCTTGTAA+TGG | - | chr5_2:11649115-11649134 | Msa0757000:CDS | 25.0% |
| !! | AAATGACATTGACTAAGAAA+TGG | + | chr5_2:11649352-11649371 | None:intergenic | 25.0% |
| ! | TTAATGTAAACATTGCTATG+TGG | - | chr5_2:11649560-11649579 | Msa0757000:intron | 25.0% |
| !! | CAATTTTGTATTATGTCAAC+TGG | + | chr5_2:11649962-11649981 | None:intergenic | 25.0% |
| !! | GTTCTGATTTTCCATAAAAT+TGG | - | chr5_2:11650017-11650036 | Msa0757000:five_prime_UTR | 25.0% |
| ! | TCAAGATCTAATGTGATTAT+GGG | + | chr5_2:11650245-11650264 | None:intergenic | 25.0% |
| ! | ATCAAGATCTAATGTGATTA+TGG | + | chr5_2:11650246-11650265 | None:intergenic | 25.0% |
| ! | AACTCCATTCTTAAATTCTT+CGG | + | chr5_2:11650337-11650356 | None:intergenic | 25.0% |
| !! | GTTGATAAAAGACAAAATCA+TGG | - | chr5_2:11650919-11650938 | Msa0757000:intron | 25.0% |
| ! | GATGAATATAATGCAAGAAA+AGG | - | chr5_2:11650955-11650974 | Msa0757000:intron | 25.0% |
| ! | TATAATGCAAGAAAAGGTAA+AGG | - | chr5_2:11650961-11650980 | Msa0757000:intron | 25.0% |
| ! | GATGAATATAATGCAAGAAA+AGG | - | chr5_2:11650955-11650974 | Msa0757000:intron | 25.0% |
| ! | TAACAACATACATCATTTCT+TGG | + | chr5_2:11651323-11651342 | None:intergenic | 25.0% |
| !! | GTTGATAAAAGACAAAATCA+TGG | - | chr5_2:11650919-11650938 | Msa0757000:intron | 25.0% |
| !! | TATAATGATAGTGAAGATGA+AGG | - | chr5_2:11651613-11651632 | Msa0757000:intron | 25.0% |
| !! | ATAATGATAGTGAAGATGAA+GGG | - | chr5_2:11651614-11651633 | Msa0757000:intron | 25.0% |
| ! | GATACAAATGATTCAAGAAA+AGG | - | chr5_2:11651676-11651695 | Msa0757000:intron | 25.0% |
| ! | CGAATGATATAATTTCTACA+CGG | - | chr5_2:11651753-11651772 | Msa0757000:intron | 25.0% |
| ! | AAGAAAACAATTATATCGCA+TGG | + | chr5_2:11651784-11651803 | None:intergenic | 25.0% |
| ! | GATACAAAAAATGCAACAAA+AGG | - | chr5_2:11651823-11651842 | Msa0757000:intron | 25.0% |
| ! | AAAAAATGCAACAAAAGGTA+CGG | - | chr5_2:11651828-11651847 | Msa0757000:intron | 25.0% |
| !!! | GATTGTTGTTTATGTTGTTT+TGG | - | chr5_2:11652419-11652438 | Msa0757000:five_prime_UTR | 25.0% |
| !! | ATATGAGATTTTGGTGAATG+AGG | + | chr5_2:11648390-11648409 | None:intergenic | 30.0% |
| ! | TTTGGATCGATATGAGATTT+TGG | + | chr5_2:11648399-11648418 | None:intergenic | 30.0% |
| GTGAAATTCAGAATTGAAAG+AGG | + | chr5_2:11648489-11648508 | None:intergenic | 30.0% | |
| ATTAAGACAAATAGAGACAG+AGG | + | chr5_2:11648531-11648550 | None:intergenic | 30.0% | |
| CAAGTTTGAACGCTATATAA+TGG | + | chr5_2:11649273-11649292 | None:intergenic | 30.0% | |
| !!! | GGAAGTCAAGATTTTAAGAT+TGG | - | chr5_2:11649532-11649551 | Msa0757000:intron | 30.0% |
| TCTGAACTCAAATAAGGAAT+CGG | + | chr5_2:11649678-11649697 | None:intergenic | 30.0% | |
| CAGTATACAAAGTGATTAGT+TGG | + | chr5_2:11649811-11649830 | None:intergenic | 30.0% | |
| ! | AAAATTGCTGACAAGAGTAT+AGG | - | chr5_2:11649975-11649994 | Msa0757000:intron | 30.0% |
| ATGGAAAATCAGAACAAATC+CGG | + | chr5_2:11650012-11650031 | None:intergenic | 30.0% | |
| ! | CAAAATGAGCACCAATTTTA+TGG | + | chr5_2:11650031-11650050 | None:intergenic | 30.0% |
| GGAAAGAACACTAATTTCAA+AGG | - | chr5_2:11650068-11650087 | Msa0757000:five_prime_UTR | 30.0% | |
| ACTAATTTCAAAGGTAACTG+AGG | - | chr5_2:11650077-11650096 | Msa0757000:five_prime_UTR | 30.0% | |
| TTCTCTTAAGGATGCTTAAT+TGG | - | chr5_2:11650170-11650189 | Msa0757000:five_prime_UTR | 30.0% | |
| GGATAACAATCAAGATCATT+TGG | + | chr5_2:11650224-11650243 | None:intergenic | 30.0% | |
| TCTTAAATTCTTCGGTTACT+TGG | + | chr5_2:11650329-11650348 | None:intergenic | 30.0% | |
| GTAACCGAAGAATTTAAGAA+TGG | - | chr5_2:11650330-11650349 | Msa0757000:intron | 30.0% | |
| !! | TGGAGTTGATGATTTCATTA+AGG | - | chr5_2:11650350-11650369 | Msa0757000:intron | 30.0% |
| TTGGAATTTCCAACAATTTG+AGG | - | chr5_2:11650661-11650680 | Msa0757000:five_prime_UTR | 30.0% | |
| AGTATTCTAAGCAGAATTGT+TGG | + | chr5_2:11650819-11650838 | None:intergenic | 30.0% | |
| CTAATTAATGATGTGGATGA+TGG | - | chr5_2:11651399-11651418 | Msa0757000:intron | 30.0% | |
| AGAGGAATTAGAAATTGTCA+AGG | - | chr5_2:11651454-11651473 | Msa0757000:intron | 30.0% | |
| GAGGAATTAGAAATTGTCAA+GGG | - | chr5_2:11651455-11651474 | Msa0757000:intron | 30.0% | |
| !!! | GTTTTCTTTTCTGAAATGCA+AGG | - | chr5_2:11651796-11651815 | Msa0757000:intron | 30.0% |
| GAGAAAAGTTATATCTGTTG+AGG | - | chr5_2:11651978-11651997 | Msa0757000:intron | 30.0% | |
| TCACCCTAGATATAATATCA+CGG | + | chr5_2:11652158-11652177 | None:intergenic | 30.0% | |
| AACTCATCTTTCATTTCACT+TGG | + | chr5_2:11652222-11652241 | None:intergenic | 30.0% | |
| GACATATTATACTAGACCTA+TGG | - | chr5_2:11652346-11652365 | Msa0757000:five_prime_UTR | 30.0% | |
| !!! | ACTTTTAAGTACTGATCCAT+AGG | + | chr5_2:11652365-11652384 | None:intergenic | 30.0% |
| TCTCATATTCAGATGAACTA+GGG | + | chr5_2:11652401-11652420 | None:intergenic | 30.0% | |
| ATCTCATATTCAGATGAACT+AGG | + | chr5_2:11652402-11652421 | None:intergenic | 30.0% | |
| GATACTATGAAATTGCTTGA+TGG | - | chr5_2:11652451-11652470 | Msa0757000:five_prime_UTR | 30.0% | |
| !! | TATCGATCCAAATCGATTTG+TGG | - | chr5_2:11648407-11648426 | Msa0757000:three_prime_UTR | 35.0% |
| TTTGGATCCACAAATCGATT+TGG | + | chr5_2:11648417-11648436 | None:intergenic | 35.0% | |
| AGAATTGAAAGAGGAGTTTC+CGG | + | chr5_2:11648480-11648499 | None:intergenic | 35.0% | |
| ACTGAGTAATATACAACGCT+GGG | - | chr5_2:11649092-11649111 | Msa0757000:CDS | 35.0% | |
| AATTGAGTCCATTTCAACGT+TGG | - | chr5_2:11649228-11649247 | Msa0757000:CDS | 35.0% | |
| ATTGAGTCCATTTCAACGTT+GGG | - | chr5_2:11649229-11649248 | Msa0757000:CDS | 35.0% | |
| ! | AGCAAGTTCTTTTGACCATT+TGG | + | chr5_2:11649445-11649464 | None:intergenic | 35.0% |
| ! | AATGGTCAAAAGAACTTGCT+TGG | - | chr5_2:11649445-11649464 | Msa0757000:CDS | 35.0% |
| AAAATCGAAATTGACGCAGA+TGG | + | chr5_2:11649649-11649668 | None:intergenic | 35.0% | |
| ! | TTCTGCTCTGAACTCAAATA+AGG | + | chr5_2:11649684-11649703 | None:intergenic | 35.0% |
| TCTCACTCAAAGAGATACAA+GGG | + | chr5_2:11649708-11649727 | None:intergenic | 35.0% | |
| ATATGTACAGAGATATAGCC+AGG | + | chr5_2:11649735-11649754 | None:intergenic | 35.0% | |
| GTTTACATTCCTAACTAGCT+AGG | - | chr5_2:11649762-11649781 | Msa0757000:intron | 35.0% | |
| TGTAGTTTACCTAGCTAGTT+AGG | + | chr5_2:11649774-11649793 | None:intergenic | 35.0% | |
| ! | GATTAGTTGGATCGTATTAG+AGG | + | chr5_2:11649798-11649817 | None:intergenic | 35.0% |
| TCACTTTGTATACTGATCCA+TGG | - | chr5_2:11649816-11649835 | Msa0757000:CDS | 35.0% | |
| CACTTTGTATACTGATCCAT+GGG | - | chr5_2:11649817-11649836 | Msa0757000:CDS | 35.0% | |
| AGTAGAAAAACCTGTCAATC+TGG | - | chr5_2:11649872-11649891 | Msa0757000:CDS | 35.0% | |
| GTAGAAAAACCTGTCAATCT+GGG | - | chr5_2:11649873-11649892 | Msa0757000:CDS | 35.0% | |
| TAGAAAAACCTGTCAATCTG+GGG | - | chr5_2:11649874-11649893 | Msa0757000:CDS | 35.0% | |
| CTTCTGGTGTCTTTACAAAA+AGG | - | chr5_2:11649934-11649953 | Msa0757000:intron | 35.0% | |
| TGGAAAATCAGAACAAATCC+GGG | + | chr5_2:11650011-11650030 | None:intergenic | 35.0% | |
| TAAAAAGCTTCAGCAAGAAC+TGG | - | chr5_2:11650125-11650144 | Msa0757000:five_prime_UTR | 35.0% | |
| ! | TTGGTTATGCACGTTTTATC+TGG | - | chr5_2:11650189-11650208 | Msa0757000:five_prime_UTR | 35.0% |
| ! | AAGGTTTCTAAAAGACACTC+AGG | - | chr5_2:11650369-11650388 | Msa0757000:intron | 35.0% |
| AAAACAAAAGGCAGAAGCTT+GGG | - | chr5_2:11650490-11650509 | Msa0757000:intron | 35.0% | |
| CATCTTCAATATCGTTGGAT+GGG | + | chr5_2:11650581-11650600 | None:intergenic | 35.0% | |
| TCTTGCATCTTCAATATCGT+TGG | + | chr5_2:11650586-11650605 | None:intergenic | 35.0% | |
| CATTATTTGTAACAGCTGCT+TGG | + | chr5_2:11650617-11650636 | None:intergenic | 35.0% | |
| ! | AAATGCAAAGGAGTCAGTTT+TGG | - | chr5_2:11650642-11650661 | Msa0757000:five_prime_UTR | 35.0% |
| ATCAGATTGCCTCAAATTGT+TGG | + | chr5_2:11650673-11650692 | None:intergenic | 35.0% | |
| AAAATTAAGAACGCTACCTG+TGG | + | chr5_2:11650790-11650809 | None:intergenic | 35.0% | |
| ! | ACAGGTAGCGTTCTTAATTT+TGG | - | chr5_2:11650789-11650808 | Msa0757000:intron | 35.0% |
| ACAGAACCATCTAACTATAG+TGG | - | chr5_2:11650862-11650881 | Msa0757000:intron | 35.0% | |
| AACCATCTAACTATAGTGGT+TGG | - | chr5_2:11650866-11650885 | Msa0757000:intron | 35.0% | |
| TTCCAACCACTATAGTTAGA+TGG | + | chr5_2:11650871-11650890 | None:intergenic | 35.0% | |
| ! | ACAAAATCATGGACTGACTA+GGG | - | chr5_2:11650930-11650949 | Msa0757000:intron | 35.0% |
| ! | ATTCCTCTTTTCCTGTTGAA+TGG | + | chr5_2:11651442-11651461 | None:intergenic | 35.0% |
| ATTAGAAATTGTCAAGGGAG+AGG | - | chr5_2:11651460-11651479 | Msa0757000:intron | 35.0% | |
| CTATAGTTAGATGGTTGAGA+AGG | + | chr5_2:11651505-11651524 | None:intergenic | 35.0% | |
| TCTCAACCATCTAACTATAG+TGG | - | chr5_2:11651505-11651524 | Msa0757000:intron | 35.0% | |
| AACCATCTAACTATAGTGGT+TGG | - | chr5_2:11650866-11650885 | Msa0757000:intron | 35.0% | |
| AGTGTTCATTCAACTCTCTA+TGG | - | chr5_2:11651535-11651554 | Msa0757000:intron | 35.0% | |
| GTGTTCATTCAACTCTCTAT+GGG | - | chr5_2:11651536-11651555 | Msa0757000:intron | 35.0% | |
| ATGAAGGGATGCATCTTATT+TGG | - | chr5_2:11651629-11651648 | Msa0757000:intron | 35.0% | |
| ! | TGAAGGGATGCATCTTATTT+GGG | - | chr5_2:11651630-11651649 | Msa0757000:intron | 35.0% |
| ! | AAGATGAACAACGCTACTTT+GGG | - | chr5_2:11651880-11651899 | Msa0757000:intron | 35.0% |
| ! | ACTGAAGTTGAGTTGTTAGT+TGG | + | chr5_2:11651931-11651950 | None:intergenic | 35.0% |
| TAGAACTCATGAGCATCTTA+CGG | + | chr5_2:11652015-11652034 | None:intergenic | 35.0% | |
| TGACCCGTGATATTATATCT+AGG | - | chr5_2:11652151-11652170 | Msa0757000:intron | 35.0% | |
| GACCCGTGATATTATATCTA+GGG | - | chr5_2:11652152-11652171 | Msa0757000:intron | 35.0% | |
| CACCCTAGATATAATATCAC+GGG | + | chr5_2:11652157-11652176 | None:intergenic | 35.0% | |
| TTTGGTGAATGAGGAGTTTC+CGG | + | chr5_2:11648381-11648400 | None:intergenic | 40.0% | |
| TAGCTTATGATAGCAGCTCA+TGG | - | chr5_2:11648850-11648869 | Msa0757000:CDS | 40.0% | |
| GACTGAGTAATATACAACGC+TGG | - | chr5_2:11649091-11649110 | Msa0757000:CDS | 40.0% | |
| CTGAGTAATATACAACGCTG+GGG | - | chr5_2:11649093-11649112 | Msa0757000:CDS | 40.0% | |
| TTGAGTCCATTTCAACGTTG+GGG | - | chr5_2:11649230-11649249 | Msa0757000:CDS | 40.0% | |
| TAATAGCCCCAACGTTGAAA+TGG | + | chr5_2:11649239-11649258 | None:intergenic | 40.0% | |
| CTCACTCAAAGAGATACAAG+GGG | + | chr5_2:11649707-11649726 | None:intergenic | 40.0% | |
| CTCTCACTCAAAGAGATACA+AGG | + | chr5_2:11649709-11649728 | None:intergenic | 40.0% | |
| AGTAGAACAATCATCACCCA+TGG | + | chr5_2:11649836-11649855 | None:intergenic | 40.0% | |
| AGTATAGGTTCCAGAAAACC+CGG | - | chr5_2:11649990-11650009 | Msa0757000:exon | 40.0% | |
| TTTCAAAGGTAACTGAGGAG+AGG | - | chr5_2:11650082-11650101 | Msa0757000:five_prime_UTR | 40.0% | |
| TTATGAAACCCGATCGAAGT+TGG | - | chr5_2:11650277-11650296 | Msa0757000:intron | 40.0% | |
| AAGTTGGATGATGCGAAGAA+AGG | - | chr5_2:11650293-11650312 | Msa0757000:intron | 40.0% | |
| ATGCGAAGAAAGGACTGTAA+TGG | - | chr5_2:11650303-11650322 | Msa0757000:intron | 40.0% | |
| CGGTTCTTACACTTAGAACA+TGG | + | chr5_2:11650426-11650445 | None:intergenic | 40.0% | |
| CCTCTATGTATATAGGTGTC+CGG | - | chr5_2:11650460-11650479 | Msa0757000:intron | 40.0% | |
| TCCGGAATGACCAAAACAAA+AGG | - | chr5_2:11650478-11650497 | Msa0757000:intron | 40.0% | |
| !!! | GCCTTTTGTTTTGGTCATTC+CGG | + | chr5_2:11650482-11650501 | None:intergenic | 40.0% |
| !! | CAAGCTTCTGCCTTTTGTTT+TGG | + | chr5_2:11650491-11650510 | None:intergenic | 40.0% |
| CAAAACAAAAGGCAGAAGCT+TGG | - | chr5_2:11650489-11650508 | Msa0757000:intron | 40.0% | |
| GCATCTTCAATATCGTTGGA+TGG | + | chr5_2:11650582-11650601 | None:intergenic | 40.0% | |
| ! | GGACTAGTACATGATTGAGA+AGG | + | chr5_2:11650741-11650760 | None:intergenic | 40.0% |
| GTGGAAAATGACATATGTGG+TGG | + | chr5_2:11650771-11650790 | None:intergenic | 40.0% | |
| CCTGTGGAAAATGACATATG+TGG | + | chr5_2:11650774-11650793 | None:intergenic | 40.0% | |
| !!! | CCACATATGTCATTTTCCAC+AGG | - | chr5_2:11650771-11650790 | Msa0757000:intron | 40.0% |
| AGTGTTCATTCCACTCTCTA+CGG | - | chr5_2:11650892-11650911 | Msa0757000:intron | 40.0% | |
| ! | GACAAAATCATGGACTGACT+AGG | - | chr5_2:11650929-11650948 | Msa0757000:intron | 40.0% |
| TATATACAGCTTCAGCAGAG+AGG | - | chr5_2:11651070-11651089 | Msa0757000:intron | 40.0% | |
| TATATACAGCTTCAGCAGAG+AGG | - | chr5_2:11651070-11651089 | Msa0757000:intron | 40.0% | |
| TGATCAGATCACCATTCAAC+AGG | - | chr5_2:11651428-11651447 | Msa0757000:intron | 40.0% | |
| TCACCATTCAACAGGAAAAG+AGG | - | chr5_2:11651436-11651455 | Msa0757000:intron | 40.0% | |
| TTAGATGGTTGAGAAGGCTT+CGG | + | chr5_2:11651499-11651518 | None:intergenic | 40.0% | |
| TTCATTCAACTCTCTATGGG+AGG | - | chr5_2:11651539-11651558 | Msa0757000:intron | 40.0% | |
| TCATTCAACTCTCTATGGGA+GGG | - | chr5_2:11651540-11651559 | Msa0757000:intron | 40.0% | |
| GAAGATGAACAACGCTACTT+TGG | - | chr5_2:11651879-11651898 | Msa0757000:intron | 40.0% | |
| ! | GAAGTTGAGTTGTTAGTTGG+TGG | + | chr5_2:11651928-11651947 | None:intergenic | 40.0% |
| ACTTCAGTACCTTCAACTGA+AGG | - | chr5_2:11651943-11651962 | Msa0757000:intron | 40.0% | |
| TCATGAGATCCTTCAGTTGA+AGG | + | chr5_2:11651955-11651974 | None:intergenic | 40.0% | |
| CAACTGAAGGATCTCATGAT+AGG | - | chr5_2:11651956-11651975 | Msa0757000:intron | 40.0% | |
| AGAACTCATGAGCATCTTAC+GGG | + | chr5_2:11652014-11652033 | None:intergenic | 40.0% | |
| AATATCACGGGTCACAGTTT+GGG | + | chr5_2:11652145-11652164 | None:intergenic | 40.0% | |
| TAATATCACGGGTCACAGTT+TGG | + | chr5_2:11652146-11652165 | None:intergenic | 40.0% | |
| TAATCTTTCCACTTCTCAGC+TGG | + | chr5_2:11652198-11652217 | None:intergenic | 40.0% | |
| GCGGAATCGAAGAATCGATT+TGG | + | chr5_2:11648435-11648454 | None:intergenic | 45.0% | |
| ! | AATCGATTCTTCGATTCCGC+CGG | - | chr5_2:11648435-11648454 | Msa0757000:three_prime_UTR | 45.0% |
| CAGCAAGACACTATGCCAAA+TGG | - | chr5_2:11649427-11649446 | Msa0757000:intron | 45.0% | |
| CTCTTTGAGTGAGAGAATCC+TGG | - | chr5_2:11649714-11649733 | Msa0757000:intron | 45.0% | |
| AACCTGTCAATCTGGGGATA+AGG | - | chr5_2:11649880-11649899 | Msa0757000:CDS | 45.0% | |
| GCAGGGACAAGCAAAATTTG+TGG | + | chr5_2:11649913-11649932 | None:intergenic | 45.0% | |
| ! | GTAAAGACACCAGAAGTGCA+GGG | + | chr5_2:11649930-11649949 | None:intergenic | 45.0% |
| ! | TGTAAAGACACCAGAAGTGC+AGG | + | chr5_2:11649931-11649950 | None:intergenic | 45.0% |
| ! | CAGAACAAATCCGGGTTTTC+TGG | + | chr5_2:11650003-11650022 | None:intergenic | 45.0% |
| TCGCATCATCCAACTTCGAT+CGG | + | chr5_2:11650289-11650308 | None:intergenic | 45.0% | |
| CCGGACACCTATATACATAG+AGG | + | chr5_2:11650463-11650482 | None:intergenic | 45.0% | |
| GTACATGATTGAGAAGGCTC+CGG | + | chr5_2:11650735-11650754 | None:intergenic | 45.0% | |
| TTCATTCCACTCTCTACGGA+AGG | - | chr5_2:11650896-11650915 | Msa0757000:intron | 45.0% | |
| TCATTCCACTCTCTACGGAA+GGG | - | chr5_2:11650897-11650916 | Msa0757000:intron | 45.0% | |
| ! | CAGAGAGGCATGCAACATAT+GGG | - | chr5_2:11651085-11651104 | Msa0757000:intron | 45.0% |
| ! | CAGAGAGGCATGCAACATAT+GGG | - | chr5_2:11651085-11651104 | Msa0757000:intron | 45.0% |
| CGCCAACCACTATAGTTAGA+TGG | + | chr5_2:11651514-11651533 | None:intergenic | 45.0% | |
| ! | AGACAAAATCATGGACTGCC+TGG | - | chr5_2:11651571-11651590 | Msa0757000:intron | 45.0% |
| ! | GACAAAATCATGGACTGCCT+GGG | - | chr5_2:11651572-11651591 | Msa0757000:intron | 45.0% |
| ! | ACAAAATCATGGACTGCCTG+GGG | - | chr5_2:11651573-11651592 | Msa0757000:intron | 45.0% |
| ! | AATGCAACAAAAGGTACGGC+AGG | - | chr5_2:11651832-11651851 | Msa0757000:intron | 45.0% |
| ! | AAAGGTACGGCAGGAAGTTT+AGG | - | chr5_2:11651841-11651860 | Msa0757000:intron | 45.0% |
| ! | CTACTTTGGGTTCATTCCCA+CGG | - | chr5_2:11651893-11651912 | Msa0757000:intron | 45.0% |
| ! | CAAACTTGTTTCCCACTTGC+AGG | - | chr5_2:11652106-11652125 | Msa0757000:intron | 45.0% |
| ATATCACGGGTCACAGTTTG+GGG | + | chr5_2:11652144-11652163 | None:intergenic | 45.0% | |
| ! | AAATCGATTCTCACCACCGC+CGG | - | chr5_2:11648317-11648336 | Msa0757000:three_prime_UTR | 50.0% |
| CGTGGATTCTGGTGAGTTTC+CGG | + | chr5_2:11648457-11648476 | None:intergenic | 50.0% | |
| AAACTCACCAGAATCCACGC+CGG | - | chr5_2:11648458-11648477 | Msa0757000:three_prime_UTR | 50.0% | |
| TGCCTTATCCCCAGATTGAC+AGG | + | chr5_2:11649885-11649904 | None:intergenic | 50.0% | |
| TTTGCTTGTCCCTGCACTTC+TGG | - | chr5_2:11649918-11649937 | Msa0757000:intron | 50.0% | |
| CGCATCATCCAACTTCGATC+GGG | + | chr5_2:11650288-11650307 | None:intergenic | 50.0% | |
| TCAGGAGTTGCTGACGCATT+GGG | - | chr5_2:11650387-11650406 | Msa0757000:intron | 50.0% | |
| CAAAGGAGTCAGTGATCCAC+CGG | - | chr5_2:11650713-11650732 | Msa0757000:intron | 50.0% | |
| ATCAACCCTTCCGTAGAGAG+TGG | + | chr5_2:11650905-11650924 | None:intergenic | 50.0% | |
| ! | GCAGAGAGGCATGCAACATA+TGG | - | chr5_2:11651084-11651103 | Msa0757000:intron | 50.0% |
| GGCATGCAACATATGGGATG+AGG | - | chr5_2:11651091-11651110 | Msa0757000:intron | 50.0% | |
| TGCAACATATGGGATGAGGC+AGG | - | chr5_2:11651095-11651114 | Msa0757000:intron | 50.0% | |
| GCAACATATGGGATGAGGCA+GGG | - | chr5_2:11651096-11651115 | Msa0757000:intron | 50.0% | |
| CAACATATGGGATGAGGCAG+GGG | - | chr5_2:11651097-11651116 | Msa0757000:intron | 50.0% | |
| GGGTTGGATGACCAAGATCA+TGG | - | chr5_2:11651117-11651136 | Msa0757000:intron | 50.0% | |
| GGATGACCAAGATCATGGAC+TGG | - | chr5_2:11651122-11651141 | Msa0757000:intron | 50.0% | |
| !! | ACCAAGATCATGGACTGGCT+AGG | - | chr5_2:11651127-11651146 | Msa0757000:intron | 50.0% |
| !! | CCAAGATCATGGACTGGCTA+GGG | - | chr5_2:11651128-11651147 | Msa0757000:intron | 50.0% |
| ! | GCAGAGAGGCATGCAACATA+TGG | - | chr5_2:11651084-11651103 | Msa0757000:intron | 50.0% |
| GGCATGCAACATATGGGATG+AGG | - | chr5_2:11651091-11651110 | Msa0757000:intron | 50.0% | |
| TGCAACATATGGGATGAGGC+AGG | - | chr5_2:11651095-11651114 | Msa0757000:intron | 50.0% | |
| GCAACATATGGGATGAGGCA+GGG | - | chr5_2:11651096-11651115 | Msa0757000:intron | 50.0% | |
| CAACATATGGGATGAGGCAG+GGG | - | chr5_2:11651097-11651116 | Msa0757000:intron | 50.0% | |
| GCATAACATTCATCAGCCCC+AGG | + | chr5_2:11651592-11651611 | None:intergenic | 50.0% | |
| ! | TTGGTGGATCAGTAGACCGT+GGG | + | chr5_2:11651912-11651931 | None:intergenic | 50.0% |
| ACTTGTTTCCCACTTGCAGG+AGG | - | chr5_2:11652109-11652128 | Msa0757000:intron | 50.0% | |
| ACAAACCTCCTCCTGCAAGT+GGG | + | chr5_2:11652120-11652139 | None:intergenic | 50.0% | |
| AACAAACCTCCTCCTGCAAG+TGG | + | chr5_2:11652121-11652140 | None:intergenic | 50.0% | |
| TTCCACTTCTCAGCTGGAGT+AGG | + | chr5_2:11652192-11652211 | None:intergenic | 50.0% | |
| GGCGGTGGTGAGAATCGATT+TGG | + | chr5_2:11648318-11648337 | None:intergenic | 55.0% | |
| GAGTTTCCGGCGATGGTGAA+AGG | + | chr5_2:11648345-11648364 | None:intergenic | 55.0% | |
| ! | TGATGGTGAGTTTCCGGCGA+TGG | + | chr5_2:11648352-11648371 | None:intergenic | 55.0% |
| !! | CGGTGGTGATGGTGAGTTTC+CGG | + | chr5_2:11648358-11648377 | None:intergenic | 55.0% |
| AAACTCACCATCACCACCGC+CGG | - | chr5_2:11648359-11648378 | Msa0757000:three_prime_UTR | 55.0% | |
| GGTGAATGAGGAGTTTCCGG+CGG | + | chr5_2:11648378-11648397 | None:intergenic | 55.0% | |
| GGATTCTGGTGAGTTTCCGG+CGG | + | chr5_2:11648454-11648473 | None:intergenic | 55.0% | |
| TGAAAGAGGAGTTTCCGGCG+TGG | + | chr5_2:11648475-11648494 | None:intergenic | 55.0% | |
| CTCAGGAGTTGCTGACGCAT+TGG | - | chr5_2:11650386-11650405 | Msa0757000:intron | 55.0% | |
| CATGATTGAGAAGGCTCCGG+TGG | + | chr5_2:11650732-11650751 | None:intergenic | 55.0% | |
| !! | GACATATGTGGTGGTGCTGC+TGG | + | chr5_2:11650762-11650781 | None:intergenic | 55.0% |
| ATATGGGATGAGGCAGGGGT+TGG | - | chr5_2:11651101-11651120 | Msa0757000:intron | 55.0% | |
| CCCTAGCCAGTCCATGATCT+TGG | + | chr5_2:11651131-11651150 | None:intergenic | 55.0% | |
| GATGGTTGAGAAGGCTTCGG+TGG | + | chr5_2:11651496-11651515 | None:intergenic | 55.0% | |
| ! | GTTGGTGGATCAGTAGACCG+TGG | + | chr5_2:11651913-11651932 | None:intergenic | 55.0% |
| TGTTTCCCACTTGCAGGAGG+AGG | - | chr5_2:11652112-11652131 | Msa0757000:intron | 55.0% | |
| TGCCTACTCCAGCTGAGAAG+TGG | - | chr5_2:11652187-11652206 | Msa0757000:intron | 55.0% | |
| ATGGTGAAAGGTTCCGGCGG+TGG | + | chr5_2:11648333-11648352 | None:intergenic | 60.0% | |
| GCGATGGTGAAAGGTTCCGG+CGG | + | chr5_2:11648336-11648355 | None:intergenic | 60.0% | |
| CCGGCGATGGTGAAAGGTTC+CGG | + | chr5_2:11648339-11648358 | None:intergenic | 60.0% | |
| CCGGAACCTTTCACCATCGC+CGG | - | chr5_2:11648336-11648355 | Msa0757000:three_prime_UTR | 60.0% | |
| GAATGAGGAGTTTCCGGCGG+TGG | + | chr5_2:11648375-11648394 | None:intergenic | 60.0% | |
| GGAGTTTCCGGCGTGGATTC+TGG | + | chr5_2:11648468-11648487 | None:intergenic | 60.0% | |
| GGAGTTTCCGGCGGTGGTGA+TGG | + | chr5_2:11648369-11648388 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 11648296 | 11652474 | 11648296 | ID=Msa0757000;Name=Msa0757000 |
| chr5_2 | mRNA | 11648296 | 11652474 | 11648296 | ID=Msa0757000-mRNA-1;Parent=Msa0757000;Name=Msa0757000-mRNA-1;_AED=0.04;_eAED=0.06;_QI=602|1|0.88|1|0.62|0.66|9|196|292 |
| chr5_2 | exon | 11648296 | 11648642 | 11648296 | ID=Msa0757000-mRNA-1:exon:5259;Parent=Msa0757000-mRNA-1 |
| chr5_2 | exon | 11648757 | 11648952 | 11648757 | ID=Msa0757000-mRNA-1:exon:5258;Parent=Msa0757000-mRNA-1 |
| chr5_2 | exon | 11649073 | 11649320 | 11649073 | ID=Msa0757000-mRNA-1:exon:5257;Parent=Msa0757000-mRNA-1 |
| chr5_2 | exon | 11649439 | 11649499 | 11649439 | ID=Msa0757000-mRNA-1:exon:5256;Parent=Msa0757000-mRNA-1 |
| chr5_2 | exon | 11649596 | 11649691 | 11649596 | ID=Msa0757000-mRNA-1:exon:5255;Parent=Msa0757000-mRNA-1 |
| chr5_2 | exon | 11649794 | 11649904 | 11649794 | ID=Msa0757000-mRNA-1:exon:5254;Parent=Msa0757000-mRNA-1 |
| chr5_2 | exon | 11649978 | 11650295 | 11649978 | ID=Msa0757000-mRNA-1:exon:5253;Parent=Msa0757000-mRNA-1 |
| chr5_2 | exon | 11650624 | 11650701 | 11650624 | ID=Msa0757000-mRNA-1:exon:5252;Parent=Msa0757000-mRNA-1 |
| chr5_2 | exon | 11652253 | 11652474 | 11652253 | ID=Msa0757000-mRNA-1:exon:5251;Parent=Msa0757000-mRNA-1 |
| chr5_2 | five_prime_UTR | 11652253 | 11652474 | 11652253 | ID=Msa0757000-mRNA-1:five_prime_utr;Parent=Msa0757000-mRNA-1 |
| chr5_2 | five_prime_UTR | 11650624 | 11650701 | 11650624 | ID=Msa0757000-mRNA-1:five_prime_utr;Parent=Msa0757000-mRNA-1 |
| chr5_2 | five_prime_UTR | 11649994 | 11650295 | 11649994 | ID=Msa0757000-mRNA-1:five_prime_utr;Parent=Msa0757000-mRNA-1 |
| chr5_2 | CDS | 11649978 | 11649993 | 11649978 | ID=Msa0757000-mRNA-1:cds;Parent=Msa0757000-mRNA-1 |
| chr5_2 | CDS | 11649794 | 11649904 | 11649794 | ID=Msa0757000-mRNA-1:cds;Parent=Msa0757000-mRNA-1 |
| chr5_2 | CDS | 11649596 | 11649691 | 11649596 | ID=Msa0757000-mRNA-1:cds;Parent=Msa0757000-mRNA-1 |
| chr5_2 | CDS | 11649439 | 11649499 | 11649439 | ID=Msa0757000-mRNA-1:cds;Parent=Msa0757000-mRNA-1 |
| chr5_2 | CDS | 11649073 | 11649320 | 11649073 | ID=Msa0757000-mRNA-1:cds;Parent=Msa0757000-mRNA-1 |
| chr5_2 | CDS | 11648757 | 11648952 | 11648757 | ID=Msa0757000-mRNA-1:cds;Parent=Msa0757000-mRNA-1 |
| chr5_2 | CDS | 11648492 | 11648642 | 11648492 | ID=Msa0757000-mRNA-1:cds;Parent=Msa0757000-mRNA-1 |
| chr5_2 | three_prime_UTR | 11648296 | 11648491 | 11648296 | ID=Msa0757000-mRNA-1:three_prime_utr;Parent=Msa0757000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
