Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757530 | XP_003611927.2 | 96.016 | 502 | 12 | 4 | 1 | 501 | 1 | 495 | 0.0 | 922 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757530 | G7KC53 | 96.016 | 502 | 12 | 4 | 1 | 501 | 1 | 495 | 0.0 | 922 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0757460 | Msa0757530 | 0.879721 | 9.891214e-70 | -8.615850e-47 |
| Msa0757510 | Msa0757530 | 0.919592 | 3.710553e-87 | -8.615850e-47 |
| Msa0757530 | Msa0798820 | 0.877436 | 6.292990e-69 | -8.615850e-47 |
| Msa0757530 | Msa0837360 | 0.846612 | 1.946986e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757530 | MtrunA17_Chr5g0403601 | 96.016 | 502 | 12 | 4 | 1 | 501 | 1 | 495 | 0.0 | 922 |
| Msa0757530 | MtrunA17_Chr8g0382381 | 43.197 | 463 | 247 | 4 | 44 | 500 | 6 | 458 | 7.34e-124 | 372 |
| Msa0757530 | MtrunA17_Chr8g0382331 | 42.117 | 463 | 250 | 3 | 44 | 500 | 5 | 455 | 1.14e-121 | 366 |
| Msa0757530 | MtrunA17_Chr5g0425781 | 40.685 | 467 | 255 | 4 | 44 | 500 | 5 | 459 | 3.54e-118 | 357 |
| Msa0757530 | MtrunA17_Chr8g0382321 | 41.901 | 463 | 255 | 2 | 44 | 500 | 6 | 460 | 7.33e-111 | 337 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757530 | AT4G36790.1 | 69.124 | 502 | 141 | 5 | 1 | 501 | 1 | 489 | 0.0 | 676 |
| Msa0757530 | AT2G18590.1 | 57.018 | 456 | 188 | 3 | 51 | 500 | 19 | 472 | 2.40e-180 | 514 |
| Msa0757530 | AT5G10190.1 | 41.991 | 462 | 252 | 2 | 44 | 500 | 5 | 455 | 2.97e-122 | 367 |
| Msa0757530 | AT1G78130.1 | 39.957 | 463 | 263 | 4 | 44 | 500 | 5 | 458 | 2.39e-112 | 342 |
| Msa0757530 | AT5G10190.2 | 41.880 | 351 | 193 | 1 | 44 | 394 | 5 | 344 | 4.43e-87 | 271 |
| Msa0757530 | AT5G10190.3 | 39.169 | 337 | 189 | 2 | 169 | 500 | 1 | 326 | 4.81e-78 | 249 |
Find 138 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAATAAGTTCTAAGTTTA+TGG | 0.098401 | 5_2:+12402622 | None:intergenic |
| CGCGCAATTTAGTGCCTTTA+TGG | 0.152888 | 5_2:-12403518 | Msa0757530:CDS |
| ACATCATCTCCTCTTCTTTC+AGG | 0.153857 | 5_2:+12403074 | None:intergenic |
| TCATGGCTGGTCAGAAGTTT+TGG | 0.226566 | 5_2:-12405126 | Msa0757530:CDS |
| CGAAGATTTGAACTCCATTT+AGG | 0.228196 | 5_2:+12402980 | None:intergenic |
| AATGCAGGCCCGTCTGATTT+AGG | 0.243271 | 5_2:-12405472 | Msa0757530:CDS |
| GGAAAACGATGATTTGGATT+TGG | 0.247729 | 5_2:+12406393 | None:intergenic |
| ATTCCAAGTAATTGTCTTAC+AGG | 0.251672 | 5_2:-12404391 | Msa0757530:CDS |
| GCAAGTTTGAGTGCATTTAT+TGG | 0.252034 | 5_2:-12405067 | Msa0757530:CDS |
| CATTCATTGCTGATAGTTAT+AGG | 0.256064 | 5_2:-12405231 | Msa0757530:CDS |
| CACATGATTCGACCTGAATA+TGG | 0.266385 | 5_2:+12403541 | None:intergenic |
| CACAAGCAGACAGAGTTAAA+AGG | 0.272801 | 5_2:+12403011 | None:intergenic |
| TATCAACCTGGCTGCTATAA+TGG | 0.279651 | 5_2:-12405551 | Msa0757530:CDS |
| GGAGTTAGAGGAGTTGGATT+TGG | 0.291569 | 5_2:-12405205 | Msa0757530:CDS |
| CTCATCTGTTGCAGCACCTT+TGG | 0.301163 | 5_2:-12403293 | Msa0757530:CDS |
| GAAAACGATGATTTGGATTT+GGG | 0.308169 | 5_2:+12406394 | None:intergenic |
| AGGGAAGGAGTTAGAGGAGT+TGG | 0.308211 | 5_2:-12405211 | Msa0757530:CDS |
| ATTGTCTTACAGGGCATTAT+TGG | 0.308907 | 5_2:-12404381 | Msa0757530:CDS |
| CATCATCTCCTCTTCTTTCA+GGG | 0.312070 | 5_2:+12403075 | None:intergenic |
| TTTGTGAATTTCTCTTGCTT+TGG | 0.320507 | 5_2:-12406488 | Msa0757530:five_prime_UTR |
| ACAATGTGGTTCGAACTAAT+TGG | 0.325301 | 5_2:-12404327 | Msa0757530:intron |
| TGGAGAGCTATAAATGGATT+TGG | 0.336581 | 5_2:-12405283 | Msa0757530:CDS |
| GCAATAAGTTCTAAGTTTAT+GGG | 0.348049 | 5_2:+12402623 | None:intergenic |
| GGAAGTGGAAAACGATGATT+TGG | 0.348923 | 5_2:+12406387 | None:intergenic |
| ATTGGTACTGTAGGCGGAAT+TGG | 0.353907 | 5_2:-12405169 | Msa0757530:CDS |
| AGTTATAGGGAAGGAGTTAG+AGG | 0.355105 | 5_2:-12405217 | Msa0757530:CDS |
| ATCCGCGAAGGACGCTGATT+TGG | 0.357441 | 5_2:-12406516 | Msa0757530:five_prime_UTR |
| ACACAAATCTATCCATATTC+AGG | 0.362159 | 5_2:-12403553 | Msa0757530:CDS |
| ATTCATTGCTGATAGTTATA+GGG | 0.365814 | 5_2:-12405230 | Msa0757530:CDS |
| GAGTACTCACTTCATCTTCA+TGG | 0.375397 | 5_2:+12406351 | None:intergenic |
| AGCTATAAATGGATTTGGTT+TGG | 0.379471 | 5_2:-12405278 | Msa0757530:CDS |
| AGGGATGATTCTATCTATAA+TGG | 0.380942 | 5_2:-12404483 | Msa0757530:CDS |
| GCGCAATTTAGTGCCTTTAT+GGG | 0.381756 | 5_2:-12403517 | Msa0757530:CDS |
| ATTCTTGCAGAGAAAATGTT+TGG | 0.382692 | 5_2:-12403265 | Msa0757530:CDS |
| TTGTCTTACAGGGCATTATT+GGG | 0.383613 | 5_2:-12404380 | Msa0757530:CDS |
| TCGATTGTCTTGTCTTATCA+TGG | 0.385947 | 5_2:-12406461 | Msa0757530:exon |
| ATCATTGTCCTGTGTTTGAT+TGG | 0.387174 | 5_2:+12403349 | None:intergenic |
| CATCAACTTGGAGGTACTCT+TGG | 0.401100 | 5_2:-12404446 | Msa0757530:CDS |
| TTAATACCAAACATTTCAAA+AGG | 0.402906 | 5_2:-12402810 | Msa0757530:three_prime_UTR |
| CTTGTGACTTCGGTCCTAAA+TGG | 0.405691 | 5_2:-12402994 | Msa0757530:three_prime_UTR |
| AACTTTGATGACAGATTTAG+TGG | 0.406804 | 5_2:+12404419 | None:intergenic |
| AGTAAACATGAAACATTTGC+AGG | 0.414201 | 5_2:-12402955 | Msa0757530:three_prime_UTR |
| TGAGAATGGAATGCCCATAA+AGG | 0.423692 | 5_2:+12403504 | None:intergenic |
| TCAATGATGGCAATTCCATT+TGG | 0.426554 | 5_2:-12403169 | Msa0757530:CDS |
| TTTGCTATTGGATGTGCAAT+GGG | 0.426804 | 5_2:-12403610 | Msa0757530:CDS |
| ATGATGTTTAAATAGACCTT+AGG | 0.429607 | 5_2:+12402769 | None:intergenic |
| CGGAATTGGAGGTGGTGTTA+TGG | 0.435818 | 5_2:-12405155 | Msa0757530:CDS |
| CTAACTTCTTTGTAGACTGC+TGG | 0.445710 | 5_2:+12405505 | None:intergenic |
| TAGGTTACCTCACATTCATA+AGG | 0.446153 | 5_2:-12405453 | Msa0757530:CDS |
| TGAGGCTCTTGCCTTGTCAA+AGG | 0.450694 | 5_2:-12403200 | Msa0757530:CDS |
| TCAGCTGAAGATCCTTTGAT+AGG | 0.451456 | 5_2:+12403220 | None:intergenic |
| TTCATAAGGAACTTTGTTCA+AGG | 0.451557 | 5_2:-12405439 | Msa0757530:CDS |
| ACAAGCAGACAGAGTTAAAA+GGG | 0.455125 | 5_2:+12403012 | None:intergenic |
| ATTGTATTATGTATTTAAGA+AGG | 0.457056 | 5_2:-12403122 | Msa0757530:CDS |
| TTAAATATGTCCGATCCGTT+TGG | 0.457641 | 5_2:+12402829 | None:intergenic |
| TTGCTATGGGAACATTCTGC+TGG | 0.459474 | 5_2:-12405360 | Msa0757530:CDS |
| CGCGAAGGACGCTGATTTGG+TGG | 0.461134 | 5_2:-12406513 | Msa0757530:five_prime_UTR |
| TTATGGGCATTCCATTCTCA+TGG | 0.462787 | 5_2:-12403501 | Msa0757530:CDS |
| CACAAGCAACACAATCCAAA+TGG | 0.463522 | 5_2:+12403154 | None:intergenic |
| GTTCCCATAGCAAGTATTGT+TGG | 0.463630 | 5_2:+12405370 | None:intergenic |
| GAGGCTCTTGCCTTGTCAAA+GGG | 0.464791 | 5_2:-12403199 | Msa0757530:CDS |
| AAAGGGTCTTCTTTCAATGA+TGG | 0.467546 | 5_2:-12403182 | Msa0757530:CDS |
| CGATTGTCTTGTCTTATCAT+GGG | 0.468458 | 5_2:-12406460 | Msa0757530:exon |
| TCATTGTCCTGTGTTTGATT+GGG | 0.470929 | 5_2:+12403350 | None:intergenic |
| ACTCTGTCTGCTTGTGACTT+CGG | 0.472536 | 5_2:-12403004 | Msa0757530:three_prime_UTR |
| TCTGTTGCAGCACCTTTGGT+TGG | 0.476156 | 5_2:-12403289 | Msa0757530:CDS |
| TTATGGGACTAACTATAAGC+TGG | 0.478256 | 5_2:-12403414 | Msa0757530:CDS |
| ATTAACATTGTTAAAGTACA+AGG | 0.479093 | 5_2:+12402680 | None:intergenic |
| CTAAATGGAGTTCAAATCTT+CGG | 0.480480 | 5_2:-12402979 | Msa0757530:three_prime_UTR |
| CACCAAATCAGCGTCCTTCG+CGG | 0.486892 | 5_2:+12406514 | None:intergenic |
| GCAATGAATGACTGCAATGC+TGG | 0.486956 | 5_2:+12405244 | None:intergenic |
| CTAAGAAGAAACCATGAGAA+TGG | 0.487296 | 5_2:+12403490 | None:intergenic |
| TAGACCAACAATACTTGCTA+TGG | 0.488171 | 5_2:-12405374 | Msa0757530:CDS |
| TAATACCAAACATTTCAAAA+GGG | 0.488362 | 5_2:-12402809 | Msa0757530:three_prime_UTR |
| TTCTCACTAGCATCTTGAAT+GGG | 0.489483 | 5_2:+12404998 | None:intergenic |
| CAATTCAATAAAGCAACTAA+TGG | 0.494567 | 5_2:+12402581 | None:intergenic |
| TGCTATGGGAACATTCTGCT+GGG | 0.500869 | 5_2:-12405359 | Msa0757530:CDS |
| TGTGCAATGGGATCCTTGAT+AGG | 0.503894 | 5_2:-12403598 | Msa0757530:CDS |
| GCTAACAGCAGCTGTAGATA+AGG | 0.506088 | 5_2:+12405336 | None:intergenic |
| TTCACTCATTCTTATCAACC+TGG | 0.507417 | 5_2:-12405563 | Msa0757530:CDS |
| AGCTATTGACCCTCCTATCA+AGG | 0.512037 | 5_2:+12403585 | None:intergenic |
| TGCCCTGTAAGACAATTACT+TGG | 0.516786 | 5_2:+12404388 | None:intergenic |
| ATCAACTTGGAGGTACTCTT+GGG | 0.517727 | 5_2:-12404445 | Msa0757530:CDS |
| GAATTGTCTTATATTTGCTT+AGG | 0.519916 | 5_2:-12402564 | Msa0757530:three_prime_UTR |
| AGAAAACTAGTTACTGATTG+AGG | 0.527052 | 5_2:+12403460 | None:intergenic |
| ACAATTGCTTATACTTGAGA+TGG | 0.532079 | 5_2:-12402861 | Msa0757530:three_prime_UTR |
| ATTCTCACTAGCATCTTGAA+TGG | 0.533216 | 5_2:+12404997 | None:intergenic |
| GGACTAACTATAAGCTGGAA+TGG | 0.534983 | 5_2:-12403409 | Msa0757530:CDS |
| CACGCTCCATTATAGCAGCC+AGG | 0.535980 | 5_2:+12405545 | None:intergenic |
| AACTATAAGCTGGAATGGTA+CGG | 0.538107 | 5_2:-12403404 | Msa0757530:CDS |
| AGAAGAGTAGTTTGCGTGAA+CGG | 0.539793 | 5_2:-12403037 | Msa0757530:three_prime_UTR |
| GTTAGTGAAGCATTCAATGC+AGG | 0.545523 | 5_2:-12405487 | Msa0757530:CDS |
| ATGCTAGTGTGACATCAACT+TGG | 0.545853 | 5_2:-12404458 | Msa0757530:CDS |
| GGTTTGAGAATGCGTGGAAG+TGG | 0.548461 | 5_2:+12406372 | None:intergenic |
| GGACTATCATCACCACTAGC+TGG | 0.550906 | 5_2:-12405418 | Msa0757530:CDS |
| ACTGTAGGCGGAATTGGAGG+TGG | 0.551168 | 5_2:-12405163 | Msa0757530:CDS |
| AATGCAAACCCTGAAAGAAG+AGG | 0.551409 | 5_2:-12403083 | Msa0757530:CDS |
| AAATCTGTTGATCCTATCAA+AGG | 0.553054 | 5_2:-12403232 | Msa0757530:CDS |
| GTTATGGCTACTGTCATGGC+TGG | 0.556439 | 5_2:-12405139 | Msa0757530:CDS |
| TGGTGTTATGGCTACTGTCA+TGG | 0.560251 | 5_2:-12405143 | Msa0757530:CDS |
| AATTTACACGACCTCTCCTA+AGG | 0.568662 | 5_2:-12402785 | Msa0757530:three_prime_UTR |
| CTTCATGGTTTGAGAATGCG+TGG | 0.577954 | 5_2:+12406366 | None:intergenic |
| GGTACTGTAGGCGGAATTGG+AGG | 0.579698 | 5_2:-12405166 | Msa0757530:CDS |
| CTAGTGTGACATCAACTTGG+AGG | 0.579784 | 5_2:-12404455 | Msa0757530:CDS |
| AGATGGCAAATGTAGCCAAA+CGG | 0.580720 | 5_2:-12402844 | Msa0757530:three_prime_UTR |
| AAGAAGACCATGGCAGTCCA+TGG | 0.581215 | 5_2:+12404351 | None:intergenic |
| CTCTTCAAGTAAAAGAAATG+AGG | 0.581315 | 5_2:+12402931 | None:intergenic |
| TTATCAGCCTCACCTCATGA+TGG | 0.583162 | 5_2:+12402899 | None:intergenic |
| CAATGGGATCCTTGATAGGA+GGG | 0.586366 | 5_2:-12403594 | Msa0757530:CDS |
| CCATGGTCTTCTTCACAATG+TGG | 0.588693 | 5_2:-12404341 | Msa0757530:CDS |
| CAAAGTTCCTTATGAATGTG+AGG | 0.588860 | 5_2:+12405446 | None:intergenic |
| GCAATGGGATCCTTGATAGG+AGG | 0.591989 | 5_2:-12403595 | Msa0757530:CDS |
| AGACCAACAATACTTGCTAT+GGG | 0.595257 | 5_2:-12405373 | Msa0757530:CDS |
| GTCACTACCATGGACTGCCA+TGG | 0.600615 | 5_2:-12404358 | Msa0757530:CDS |
| GTGAGGTAACCTAAATCAGA+CGG | 0.604891 | 5_2:+12405463 | None:intergenic |
| CATCCACGTATAGTAAAACA+AGG | 0.606809 | 5_2:+12405041 | None:intergenic |
| GCATTATTGGGTCACTACCA+TGG | 0.609004 | 5_2:-12404368 | Msa0757530:CDS |
| GAGTATATGGTTCCATCATG+AGG | 0.610169 | 5_2:-12402911 | Msa0757530:three_prime_UTR |
| ATTGCTGATAGTTATAGGGA+AGG | 0.611447 | 5_2:-12405226 | Msa0757530:CDS |
| TTCCAAGTAATTGTCTTACA+GGG | 0.612324 | 5_2:-12404390 | Msa0757530:CDS |
| GCAAATGTAGCCAAACGGAT+CGG | 0.620635 | 5_2:-12402839 | Msa0757530:three_prime_UTR |
| TTAACATTGTTAAAGTACAA+GGG | 0.623156 | 5_2:+12402681 | None:intergenic |
| TGAGGTAACCTAAATCAGAC+GGG | 0.623759 | 5_2:+12405464 | None:intergenic |
| TTCTTAAATACATAATACAA+TGG | 0.630614 | 5_2:+12403124 | None:intergenic |
| CAAACTTGCCATCAAAACAA+AGG | 0.638977 | 5_2:+12405081 | None:intergenic |
| TGAAAGAAGACCCTTTGACA+AGG | 0.642266 | 5_2:+12403189 | None:intergenic |
| ACGCAACCTGCTTAAAATCG+TGG | 0.645780 | 5_2:+12405308 | None:intergenic |
| TCTGCAAGAATGCCAACCAA+AGG | 0.651073 | 5_2:+12403277 | None:intergenic |
| GTAAACATGAAACATTTGCA+GGG | 0.658169 | 5_2:-12402954 | Msa0757530:three_prime_UTR |
| TAATTGCGTGAGATCCGCGA+AGG | 0.664156 | 5_2:-12406528 | Msa0757530:five_prime_UTR |
| TATGGTTCCATCATGAGGTG+AGG | 0.665674 | 5_2:-12402906 | Msa0757530:three_prime_UTR |
| GTTTAAATAGACCTTAGGAG+AGG | 0.671149 | 5_2:+12402774 | None:intergenic |
| ATAACAAGTATACCAGCTAG+TGG | 0.681249 | 5_2:+12405406 | None:intergenic |
| TATCAAAGGATCTTCAGCTG+AGG | 0.682943 | 5_2:-12403218 | Msa0757530:CDS |
| AGGTAGTCCCAATCAAACAC+AGG | 0.688738 | 5_2:-12403357 | Msa0757530:CDS |
| GGGACTACCTCAGAAAACAT+CGG | 0.700159 | 5_2:+12403370 | None:intergenic |
| ATGCTAGTGAGAATTCCGAA+AGG | 0.706334 | 5_2:-12404988 | Msa0757530:intron |
| CCACATTGTGAAGAAGACCA+TGG | 0.717544 | 5_2:+12404341 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGCATAAAAAAATTATT+AGG | + | chr5_2:12402998-12403017 | None:intergenic | 10.0% |
| !!! | AACTTAGAATAAAATTTTAA+AGG | - | chr5_2:12403327-12403346 | Msa0757530:CDS | 10.0% |
| !!! | ACTTAGAATAAAATTTTAAA+GGG | - | chr5_2:12403328-12403347 | Msa0757530:CDS | 10.0% |
| !!! | AAATCTATTTTAAAAACCTT+TGG | + | chr5_2:12402949-12402968 | None:intergenic | 15.0% |
| !!! | TTTTTTTATGCAAAAACTAT+AGG | - | chr5_2:12403003-12403022 | Msa0757530:three_prime_UTR | 15.0% |
| !!! | ATTAGTTTTTGTTGAAATTA+CGG | - | chr5_2:12403104-12403123 | Msa0757530:CDS | 15.0% |
| !!! | ATATAATGAATTGCATTTTA+TGG | - | chr5_2:12403504-12403523 | Msa0757530:CDS | 15.0% |
| !!! | TATAATGAATTGCATTTTAT+GGG | - | chr5_2:12403505-12403524 | Msa0757530:CDS | 15.0% |
| !! | AAAATAAATCAAAAACTGAA+TGG | + | chr5_2:12404478-12404497 | None:intergenic | 15.0% |
| !! | TTCTTAAATACATAATACAA+TGG | + | chr5_2:12406027-12406046 | None:intergenic | 15.0% |
| !! | ATTGTATTATGTATTTAAGA+AGG | - | chr5_2:12406026-12406045 | Msa0757530:intron | 15.0% |
| !! | TTTAGTTAGAAGAATATTCA+TGG | - | chr5_2:12402881-12402900 | Msa0757530:three_prime_UTR | 20.0% |
| !! | ATTTCAACAAAAACTAATCT+TGG | + | chr5_2:12403102-12403121 | None:intergenic | 20.0% |
| !! | GTTAAATATATGCTTTGATT+TGG | - | chr5_2:12403350-12403369 | Msa0757530:CDS | 20.0% |
| !! | AATTGAAAGAAGTAAGTAAA+AGG | + | chr5_2:12403469-12403488 | None:intergenic | 20.0% |
| !! | TAAACAATATAACAGTTTGA+AGG | + | chr5_2:12404559-12404578 | None:intergenic | 20.0% |
| !! | GTAGATTATATAATTGTACA+AGG | - | chr5_2:12405052-12405071 | Msa0757530:CDS | 20.0% |
| !!! | GGTTCCAATATTTTAAAAAT+CGG | + | chr5_2:12405348-12405367 | None:intergenic | 20.0% |
| !!! | ACTTCTTCAAATTTTATGAA+AGG | - | chr5_2:12405399-12405418 | Msa0757530:CDS | 20.0% |
| !! | TTAATACCAAACATTTCAAA+AGG | - | chr5_2:12406338-12406357 | Msa0757530:intron | 20.0% |
| !! | TAATACCAAACATTTCAAAA+GGG | - | chr5_2:12406339-12406358 | Msa0757530:intron | 20.0% |
| !! | TCACTTAAATGCAAAAATAA+GGG | + | chr5_2:12406438-12406457 | None:intergenic | 20.0% |
| !! | TTAACATTGTTAAAGTACAA+GGG | + | chr5_2:12406470-12406489 | None:intergenic | 20.0% |
| !! | ATTAACATTGTTAAAGTACA+AGG | + | chr5_2:12406471-12406490 | None:intergenic | 20.0% |
| ! | GTTTATTATGCTAATGATCA+AGG | + | chr5_2:12403307-12403326 | None:intergenic | 25.0% |
| ! | CTTTGATATTGAGAAAAATG+AGG | - | chr5_2:12403398-12403417 | Msa0757530:CDS | 25.0% |
| ! | GAAGAAAATCATACAAAGTT+TGG | + | chr5_2:12403447-12403466 | None:intergenic | 25.0% |
| !! | AGAACAACAATACAGATTTT+TGG | - | chr5_2:12403553-12403572 | Msa0757530:CDS | 25.0% |
| ! | ATTCATTGCTGATAGTTATA+GGG | - | chr5_2:12403918-12403937 | Msa0757530:intron | 25.0% |
| !!! | TTTGGAGTAGTAAGTTTTAT+TGG | - | chr5_2:12403961-12403980 | Msa0757530:intron | 25.0% |
| ! | ACATTACTCATGTGAAATTT+AGG | - | chr5_2:12404206-12404225 | Msa0757530:intron | 25.0% |
| ! | AAATTTGAGCCTTTATCAAA+CGG | + | chr5_2:12404289-12404308 | None:intergenic | 25.0% |
| !!! | TTTGAAGGCATTTATTTACT+TGG | + | chr5_2:12404544-12404563 | None:intergenic | 25.0% |
| ! | ATGTAACAAAATACAAGAAC+AGG | - | chr5_2:12405092-12405111 | Msa0757530:CDS | 25.0% |
| ! | TATTATTATCAAAACCTGCA+TGG | + | chr5_2:12405495-12405514 | None:intergenic | 25.0% |
| !!! | TCTTTTACTTGAAGAGTATA+TGG | - | chr5_2:12406224-12406243 | Msa0757530:intron | 25.0% |
| !!! | AATTTCCCTTTTGAAATGTT+TGG | + | chr5_2:12406347-12406366 | None:intergenic | 25.0% |
| ! | ATGATGTTTAAATAGACCTT+AGG | + | chr5_2:12406382-12406401 | None:intergenic | 25.0% |
| ! | GTCACTTAAATGCAAAAATA+AGG | + | chr5_2:12406439-12406458 | None:intergenic | 25.0% |
| !!! | GCAATAAGTTCTAAGTTTAT+GGG | + | chr5_2:12406528-12406547 | None:intergenic | 25.0% |
| !!! | AGCAATAAGTTCTAAGTTTA+TGG | + | chr5_2:12406529-12406548 | None:intergenic | 25.0% |
| ! | CAATTCAATAAAGCAACTAA+TGG | + | chr5_2:12406570-12406589 | None:intergenic | 25.0% |
| ! | GAATTGTCTTATATTTGCTT+AGG | - | chr5_2:12406584-12406603 | Msa0757530:five_prime_UTR | 25.0% |
| TTTGTGAATTTCTCTTGCTT+TGG | - | chr5_2:12402660-12402679 | Msa0757530:three_prime_UTR | 30.0% | |
| ! | AGATGTTGTGCTATGTTTTT+GGG | + | chr5_2:12402725-12402744 | None:intergenic | 30.0% |
| ! | TAGATGTTGTGCTATGTTTT+TGG | + | chr5_2:12402726-12402745 | None:intergenic | 30.0% |
| ! | GAAAACGATGATTTGGATTT+GGG | + | chr5_2:12402757-12402776 | None:intergenic | 30.0% |
| CAAAGAAAGAAAGAAACGTA+AGG | + | chr5_2:12402822-12402841 | None:intergenic | 30.0% | |
| ! | AGACTTAGAGAATTTTCCAA+AGG | - | chr5_2:12402930-12402949 | Msa0757530:three_prime_UTR | 30.0% |
| ACGATAGTTAGACAAAATCA+CGG | + | chr5_2:12403137-12403156 | None:intergenic | 30.0% | |
| AATTCAAACATGCACAAAAC+TGG | - | chr5_2:12403158-12403177 | Msa0757530:CDS | 30.0% | |
| ! | AAATCTGTATTGTTGTTCTG+TGG | + | chr5_2:12403552-12403571 | None:intergenic | 30.0% |
| TTCATAAGGAACTTTGTTCA+AGG | - | chr5_2:12403709-12403728 | Msa0757530:intron | 30.0% | |
| ! | AGCTATAAATGGATTTGGTT+TGG | - | chr5_2:12403870-12403889 | Msa0757530:intron | 30.0% |
| CATTCATTGCTGATAGTTAT+AGG | - | chr5_2:12403917-12403936 | Msa0757530:intron | 30.0% | |
| !!! | GTAAGTTTTATTGGTACTGT+AGG | - | chr5_2:12403970-12403989 | Msa0757530:intron | 30.0% |
| !!! | AATCCTTGTTTTACTATACG+TGG | - | chr5_2:12404104-12404123 | Msa0757530:intron | 30.0% |
| ! | ATGGGAGAAAATCTTTTTCT+TGG | + | chr5_2:12404135-12404154 | None:intergenic | 30.0% |
| ACCTAGTGAATTAAACTACA+TGG | - | chr5_2:12404339-12404358 | Msa0757530:CDS | 30.0% | |
| TCCATGTAGTTTAATTCACT+AGG | + | chr5_2:12404343-12404362 | None:intergenic | 30.0% | |
| TGAATTAAACTACATGGAAC+CGG | - | chr5_2:12404345-12404364 | Msa0757530:CDS | 30.0% | |
| GATTCTTTGTAGTCAAATAG+TGG | - | chr5_2:12404389-12404408 | Msa0757530:CDS | 30.0% | |
| AACTACTGATCAAAATCAGA+TGG | + | chr5_2:12404432-12404451 | None:intergenic | 30.0% | |
| GCTAAATTTCAGCATTCATT+CGG | + | chr5_2:12404503-12404522 | None:intergenic | 30.0% | |
| TTATTTGTCAGTTAGTCATG+AGG | + | chr5_2:12404585-12404604 | None:intergenic | 30.0% | |
| TGAATGCTTTCATATGTCTT+TGG | - | chr5_2:12404606-12404625 | Msa0757530:intron | 30.0% | |
| AGGGATGATTCTATCTATAA+TGG | - | chr5_2:12404665-12404684 | Msa0757530:intron | 30.0% | |
| ! | AACTTTGATGACAGATTTAG+TGG | + | chr5_2:12404732-12404751 | None:intergenic | 30.0% |
| ATTCCAAGTAATTGTCTTAC+AGG | - | chr5_2:12404757-12404776 | Msa0757530:intron | 30.0% | |
| TTCCAAGTAATTGTCTTACA+GGG | - | chr5_2:12404758-12404777 | Msa0757530:intron | 30.0% | |
| AAGTTGAGTTCTTGCAATAA+CGG | + | chr5_2:12404924-12404943 | None:intergenic | 30.0% | |
| TTATTGCAAGAACTCAACTT+TGG | - | chr5_2:12404924-12404943 | Msa0757530:intron | 30.0% | |
| AGTAAGTTAAAAACCCAAGT+TGG | + | chr5_2:12405028-12405047 | None:intergenic | 30.0% | |
| !! | TTAGTTTTTAACACACTGCT+TGG | + | chr5_2:12405146-12405165 | None:intergenic | 30.0% |
| CAGTGTGTTAAAAACTAAAC+TGG | - | chr5_2:12405148-12405167 | Msa0757530:CDS | 30.0% | |
| TTTGTCATCCGATTCAATAA+TGG | + | chr5_2:12405219-12405238 | None:intergenic | 30.0% | |
| !!! | CGGTCCGATTTTTAAAATAT+TGG | - | chr5_2:12405341-12405360 | Msa0757530:CDS | 30.0% |
| ATTACACCATTTCTACTACT+TGG | + | chr5_2:12405369-12405388 | None:intergenic | 30.0% | |
| AATAGCAAAAAGACTTAGGA+GGG | + | chr5_2:12405527-12405546 | None:intergenic | 30.0% | |
| ATCCAATAGCAAAAAGACTT+AGG | + | chr5_2:12405531-12405550 | None:intergenic | 30.0% | |
| ACACAAATCTATCCATATTC+AGG | - | chr5_2:12405595-12405614 | Msa0757530:CDS | 30.0% | |
| ! | AGAAAACTAGTTACTGATTG+AGG | + | chr5_2:12405691-12405710 | None:intergenic | 30.0% |
| ! | AAAAAAGAGTGTGATCGAAA+AGG | + | chr5_2:12405716-12405735 | None:intergenic | 30.0% |
| !!! | TTCGATCACACTCTTTTTTA+TGG | - | chr5_2:12405717-12405736 | Msa0757530:intron | 30.0% |
| !!! | TCGATCACACTCTTTTTTAT+GGG | - | chr5_2:12405718-12405737 | Msa0757530:intron | 30.0% |
| ATTCTTGCAGAGAAAATGTT+TGG | - | chr5_2:12405883-12405902 | Msa0757530:intron | 30.0% | |
| AAATCTGTTGATCCTATCAA+AGG | - | chr5_2:12405916-12405935 | Msa0757530:intron | 30.0% | |
| CTAAATGGAGTTCAAATCTT+CGG | - | chr5_2:12406169-12406188 | Msa0757530:intron | 30.0% | |
| AGTAAACATGAAACATTTGC+AGG | - | chr5_2:12406193-12406212 | Msa0757530:intron | 30.0% | |
| GTAAACATGAAACATTTGCA+GGG | - | chr5_2:12406194-12406213 | Msa0757530:intron | 30.0% | |
| CTCTTCAAGTAAAAGAAATG+AGG | + | chr5_2:12406220-12406239 | None:intergenic | 30.0% | |
| ACAATTGCTTATACTTGAGA+TGG | - | chr5_2:12406287-12406306 | Msa0757530:intron | 30.0% | |
| AGTGTCAATCTAAAAAGTAG+AGG | + | chr5_2:12406410-12406429 | None:intergenic | 30.0% | |
| CTTAAATGCAAAAATAAGGG+AGG | + | chr5_2:12406435-12406454 | None:intergenic | 30.0% | |
| TCGATTGTCTTGTCTTATCA+TGG | - | chr5_2:12402687-12402706 | Msa0757530:three_prime_UTR | 35.0% | |
| CGATTGTCTTGTCTTATCAT+GGG | - | chr5_2:12402688-12402707 | Msa0757530:three_prime_UTR | 35.0% | |
| ! | GGAAAACGATGATTTGGATT+TGG | + | chr5_2:12402758-12402777 | None:intergenic | 35.0% |
| TTCACTCATTCTTATCAACC+TGG | - | chr5_2:12403585-12403604 | Msa0757530:CDS | 35.0% | |
| ! | TGCTGGAAGAAGATTTTCAT+CGG | + | chr5_2:12403629-12403648 | None:intergenic | 35.0% |
| TAGGTTACCTCACATTCATA+AGG | - | chr5_2:12403695-12403714 | Msa0757530:intron | 35.0% | |
| CAAAGTTCCTTATGAATGTG+AGG | + | chr5_2:12403705-12403724 | None:intergenic | 35.0% | |
| ATAACAAGTATACCAGCTAG+TGG | + | chr5_2:12403745-12403764 | None:intergenic | 35.0% | |
| ! | TAGACCAACAATACTTGCTA+TGG | - | chr5_2:12403774-12403793 | Msa0757530:intron | 35.0% |
| !! | AGACCAACAATACTTGCTAT+GGG | - | chr5_2:12403775-12403794 | Msa0757530:intron | 35.0% |
| ! | ATTTTAAGCAGGTTGCGTTT+TGG | - | chr5_2:12403845-12403864 | Msa0757530:intron | 35.0% |
| ! | TGGAGAGCTATAAATGGATT+TGG | - | chr5_2:12403865-12403884 | Msa0757530:intron | 35.0% |
| ATTGCTGATAGTTATAGGGA+AGG | - | chr5_2:12403922-12403941 | Msa0757530:intron | 35.0% | |
| !!! | AGTTTTATTGGTACTGTAGG+CGG | - | chr5_2:12403973-12403992 | Msa0757530:intron | 35.0% |
| CAAACTTGCCATCAAAACAA+AGG | + | chr5_2:12404070-12404089 | None:intergenic | 35.0% | |
| GCAAGTTTGAGTGCATTTAT+TGG | - | chr5_2:12404081-12404100 | Msa0757530:intron | 35.0% | |
| CATCCACGTATAGTAAAACA+AGG | + | chr5_2:12404110-12404129 | None:intergenic | 35.0% | |
| TTCTCACTAGCATCTTGAAT+GGG | + | chr5_2:12404153-12404172 | None:intergenic | 35.0% | |
| ATTCTCACTAGCATCTTGAA+TGG | + | chr5_2:12404154-12404173 | None:intergenic | 35.0% | |
| GAATGTTGTTCCTTACCTTT+CGG | + | chr5_2:12404178-12404197 | None:intergenic | 35.0% | |
| AGCTCAATACCGTTTGATAA+AGG | - | chr5_2:12404277-12404296 | Msa0757530:intron | 35.0% | |
| GAATTAAACTACATGGAACC+GGG | - | chr5_2:12404346-12404365 | Msa0757530:CDS | 35.0% | |
| TTTCCCTAAATTTCTGATCC+CGG | + | chr5_2:12404367-12404386 | None:intergenic | 35.0% | |
| !! | GAAGGCATTTATTTACTTGG+AGG | + | chr5_2:12404541-12404560 | None:intergenic | 35.0% |
| ! | ATTGTCTTACAGGGCATTAT+TGG | - | chr5_2:12404767-12404786 | Msa0757530:intron | 35.0% |
| ! | TTGTCTTACAGGGCATTATT+GGG | - | chr5_2:12404768-12404787 | Msa0757530:intron | 35.0% |
| ACAATGTGGTTCGAACTAAT+TGG | - | chr5_2:12404821-12404840 | Msa0757530:intron | 35.0% | |
| CAAATCTCATGTGGTATCTT+TGG | + | chr5_2:12404970-12404989 | None:intergenic | 35.0% | |
| TTGTTGGAGTGAAAAGTAGT+TGG | + | chr5_2:12404999-12405018 | None:intergenic | 35.0% | |
| TTGGAACCAAGTAGTAGAAA+TGG | - | chr5_2:12405360-12405379 | Msa0757530:CDS | 35.0% | |
| ATTCATTGTGTCAAGCAAGT+AGG | + | chr5_2:12405465-12405484 | None:intergenic | 35.0% | |
| CAATAGCAAAAAGACTTAGG+AGG | + | chr5_2:12405528-12405547 | None:intergenic | 35.0% | |
| !! | CTCCTAAGTCTTTTTGCTAT+TGG | - | chr5_2:12405526-12405545 | Msa0757530:CDS | 35.0% |
| !!! | TTTTGCTATTGGATGTGCAA+TGG | - | chr5_2:12405537-12405556 | Msa0757530:CDS | 35.0% |
| !! | TTTGCTATTGGATGTGCAAT+GGG | - | chr5_2:12405538-12405557 | Msa0757530:CDS | 35.0% |
| CTAAGAAGAAACCATGAGAA+TGG | + | chr5_2:12405661-12405680 | None:intergenic | 35.0% | |
| TTATGGGACTAACTATAAGC+TGG | - | chr5_2:12405734-12405753 | Msa0757530:intron | 35.0% | |
| AACTATAAGCTGGAATGGTA+CGG | - | chr5_2:12405744-12405763 | Msa0757530:intron | 35.0% | |
| TCATTGTCCTGTGTTTGATT+GGG | + | chr5_2:12405801-12405820 | None:intergenic | 35.0% | |
| ATCATTGTCCTGTGTTTGAT+TGG | + | chr5_2:12405802-12405821 | None:intergenic | 35.0% | |
| ! | GCATTTGATAGAGCTTTTGA+AGG | - | chr5_2:12405826-12405845 | Msa0757530:intron | 35.0% |
| AAAGGGTCTTCTTTCAATGA+TGG | - | chr5_2:12405966-12405985 | Msa0757530:intron | 35.0% | |
| TCAATGATGGCAATTCCATT+TGG | - | chr5_2:12405979-12405998 | Msa0757530:intron | 35.0% | |
| ! | TTTGCATTCTAGCATTTTCG+CGG | + | chr5_2:12406053-12406072 | None:intergenic | 35.0% |
| ACAAGCAGACAGAGTTAAAA+GGG | + | chr5_2:12406139-12406158 | None:intergenic | 35.0% | |
| CGAAGATTTGAACTCCATTT+AGG | + | chr5_2:12406171-12406190 | None:intergenic | 35.0% | |
| TTAAATATGTCCGATCCGTT+TGG | + | chr5_2:12406322-12406341 | None:intergenic | 35.0% | |
| GTTTAAATAGACCTTAGGAG+AGG | + | chr5_2:12406377-12406396 | None:intergenic | 35.0% | |
| GGAAGTGGAAAACGATGATT+TGG | + | chr5_2:12402764-12402783 | None:intergenic | 40.0% | |
| GAGTACTCACTTCATCTTCA+TGG | + | chr5_2:12402800-12402819 | None:intergenic | 40.0% | |
| CTAAACGCTCACTTGTATGT+TGG | + | chr5_2:12403029-12403048 | None:intergenic | 40.0% | |
| TACCGTCATTTCGTCAAACT+CGG | + | chr5_2:12403059-12403078 | None:intergenic | 40.0% | |
| TTCTCCAAGCATCAGTTACA+CGG | - | chr5_2:12403230-12403249 | Msa0757530:CDS | 40.0% | |
| TATCAACCTGGCTGCTATAA+TGG | - | chr5_2:12403597-12403616 | Msa0757530:CDS | 40.0% | |
| CTAACTTCTTTGTAGACTGC+TGG | + | chr5_2:12403646-12403665 | None:intergenic | 40.0% | |
| ! | GTTAGTGAAGCATTCAATGC+AGG | - | chr5_2:12403661-12403680 | Msa0757530:intron | 40.0% |
| TGAGGTAACCTAAATCAGAC+GGG | + | chr5_2:12403687-12403706 | None:intergenic | 40.0% | |
| GTGAGGTAACCTAAATCAGA+CGG | + | chr5_2:12403688-12403707 | None:intergenic | 40.0% | |
| ! | GTTCCCATAGCAAGTATTGT+TGG | + | chr5_2:12403781-12403800 | None:intergenic | 40.0% |
| !!! | GCGTTTTGGAGAGCTATAAA+TGG | - | chr5_2:12403859-12403878 | Msa0757530:intron | 40.0% |
| AGTTATAGGGAAGGAGTTAG+AGG | - | chr5_2:12403931-12403950 | Msa0757530:intron | 40.0% | |
| !!! | CAGAAGTTTTGGGGAATAGA+TGG | - | chr5_2:12404033-12404052 | Msa0757530:intron | 40.0% |
| !!! | AGTTTTGGGGAATAGATGGA+TGG | - | chr5_2:12404037-12404056 | Msa0757530:intron | 40.0% |
| !!! | GAGATGTGCCTTTGTTTTGA+TGG | - | chr5_2:12404059-12404078 | Msa0757530:intron | 40.0% |
| ATGCTAGTGAGAATTCCGAA+AGG | - | chr5_2:12404160-12404179 | Msa0757530:intron | 40.0% | |
| AGTGAGAATTCCGAAAGGTA+AGG | - | chr5_2:12404165-12404184 | Msa0757530:intron | 40.0% | |
| ! | GCTCAAATTTTGTGCTCGAT+CGG | - | chr5_2:12404299-12404318 | Msa0757530:intron | 40.0% |
| ! | AAATTTTGTGCTCGATCGGA+TGG | - | chr5_2:12404303-12404322 | Msa0757530:intron | 40.0% |
| GAACCGGGATCAGAAATTTA+GGG | - | chr5_2:12404361-12404380 | Msa0757530:CDS | 40.0% | |
| TGTAGTCAAATAGTGGCTGT+AGG | - | chr5_2:12404396-12404415 | Msa0757530:CDS | 40.0% | |
| ATGCTAGTGTGACATCAACT+TGG | - | chr5_2:12404690-12404709 | Msa0757530:intron | 40.0% | |
| !! | ATCAACTTGGAGGTACTCTT+GGG | - | chr5_2:12404703-12404722 | Msa0757530:intron | 40.0% |
| TGCCCTGTAAGACAATTACT+TGG | + | chr5_2:12404763-12404782 | None:intergenic | 40.0% | |
| GTATCTTTGGACGACAAGAA+AGG | + | chr5_2:12404957-12404976 | None:intergenic | 40.0% | |
| TCCAACAATAGCATCCAACT+TGG | - | chr5_2:12405011-12405030 | Msa0757530:CDS | 40.0% | |
| CCAACAATAGCATCCAACTT+GGG | - | chr5_2:12405012-12405031 | Msa0757530:CDS | 40.0% | |
| AATCTGGAGATCTCGCTAAT+TGG | + | chr5_2:12405178-12405197 | None:intergenic | 40.0% | |
| TTAGCGAGATCTCCAGATTA+TGG | - | chr5_2:12405179-12405198 | Msa0757530:CDS | 40.0% | |
| TCTCCAGATTATGGCTCAAT+CGG | - | chr5_2:12405188-12405207 | Msa0757530:CDS | 40.0% | |
| CGGGTCAACCATTATTGAAT+CGG | - | chr5_2:12405208-12405227 | Msa0757530:CDS | 40.0% | |
| GTGTCAAGCAAGTAGGTATA+AGG | + | chr5_2:12405458-12405477 | None:intergenic | 40.0% | |
| ! | AATGAATTTGCTCACCATGC+AGG | - | chr5_2:12405478-12405497 | Msa0757530:CDS | 40.0% |
| CACATGATTCGACCTGAATA+TGG | + | chr5_2:12405610-12405629 | None:intergenic | 40.0% | |
| GCGCAATTTAGTGCCTTTAT+GGG | - | chr5_2:12405631-12405650 | Msa0757530:intron | 40.0% | |
| TGAGAATGGAATGCCCATAA+AGG | + | chr5_2:12405647-12405666 | None:intergenic | 40.0% | |
| TTATGGGCATTCCATTCTCA+TGG | - | chr5_2:12405647-12405666 | Msa0757530:intron | 40.0% | |
| GGACTAACTATAAGCTGGAA+TGG | - | chr5_2:12405739-12405758 | Msa0757530:intron | 40.0% | |
| !! | AAATGCACCGATGTTTTCTG+AGG | - | chr5_2:12405771-12405790 | Msa0757530:intron | 40.0% |
| TCAGCTGAAGATCCTTTGAT+AGG | + | chr5_2:12405931-12405950 | None:intergenic | 40.0% | |
| TATCAAAGGATCTTCAGCTG+AGG | - | chr5_2:12405930-12405949 | Msa0757530:intron | 40.0% | |
| TGAAAGAAGACCCTTTGACA+AGG | + | chr5_2:12405962-12405981 | None:intergenic | 40.0% | |
| CACAAGCAACACAATCCAAA+TGG | + | chr5_2:12405997-12406016 | None:intergenic | 40.0% | |
| AATGCAAACCCTGAAAGAAG+AGG | - | chr5_2:12406065-12406084 | Msa0757530:intron | 40.0% | |
| CATCATCTCCTCTTCTTTCA+GGG | + | chr5_2:12406076-12406095 | None:intergenic | 40.0% | |
| ACATCATCTCCTCTTCTTTC+AGG | + | chr5_2:12406077-12406096 | None:intergenic | 40.0% | |
| ! | AGAAGAGTAGTTTGCGTGAA+CGG | - | chr5_2:12406111-12406130 | Msa0757530:intron | 40.0% |
| CACAAGCAGACAGAGTTAAA+AGG | + | chr5_2:12406140-12406159 | None:intergenic | 40.0% | |
| GAGTATATGGTTCCATCATG+AGG | - | chr5_2:12406237-12406256 | Msa0757530:intron | 40.0% | |
| AGATGGCAAATGTAGCCAAA+CGG | - | chr5_2:12406304-12406323 | Msa0757530:intron | 40.0% | |
| AATTTACACGACCTCTCCTA+AGG | - | chr5_2:12406363-12406382 | Msa0757530:CDS | 40.0% | |
| CTTCATGGTTTGAGAATGCG+TGG | + | chr5_2:12402785-12402804 | None:intergenic | 45.0% | |
| TACTCCGTGTAACTGATGCT+TGG | + | chr5_2:12403237-12403256 | None:intergenic | 45.0% | |
| TTGCTATGGGAACATTCTGC+TGG | - | chr5_2:12403788-12403807 | Msa0757530:intron | 45.0% | |
| TGCTATGGGAACATTCTGCT+GGG | - | chr5_2:12403789-12403808 | Msa0757530:intron | 45.0% | |
| GCTAACAGCAGCTGTAGATA+AGG | + | chr5_2:12403815-12403834 | None:intergenic | 45.0% | |
| ACGCAACCTGCTTAAAATCG+TGG | + | chr5_2:12403843-12403862 | None:intergenic | 45.0% | |
| GCAATGAATGACTGCAATGC+TGG | + | chr5_2:12403907-12403926 | None:intergenic | 45.0% | |
| GGAGTTAGAGGAGTTGGATT+TGG | - | chr5_2:12403943-12403962 | Msa0757530:intron | 45.0% | |
| ATTGGTACTGTAGGCGGAAT+TGG | - | chr5_2:12403979-12403998 | Msa0757530:intron | 45.0% | |
| !! | TGGTGTTATGGCTACTGTCA+TGG | - | chr5_2:12404005-12404024 | Msa0757530:intron | 45.0% |
| !! | TCATGGCTGGTCAGAAGTTT+TGG | - | chr5_2:12404022-12404041 | Msa0757530:intron | 45.0% |
| !! | CATGGCTGGTCAGAAGTTTT+GGG | - | chr5_2:12404023-12404042 | Msa0757530:intron | 45.0% |
| !! | ATGGCTGGTCAGAAGTTTTG+GGG | - | chr5_2:12404024-12404043 | Msa0757530:intron | 45.0% |
| !! | GCTGCTGACTCAATGAATGT+AGG | + | chr5_2:12404260-12404279 | None:intergenic | 45.0% |
| GGAACCGGGATCAGAAATTT+AGG | - | chr5_2:12404360-12404379 | Msa0757530:CDS | 45.0% | |
| ! | AATCAGCTTTGTGTGTCAGC+AGG | - | chr5_2:12404645-12404664 | Msa0757530:intron | 45.0% |
| ! | ATCAGCTTTGTGTGTCAGCA+GGG | - | chr5_2:12404646-12404665 | Msa0757530:intron | 45.0% |
| CTAGTGTGACATCAACTTGG+AGG | - | chr5_2:12404693-12404712 | Msa0757530:intron | 45.0% | |
| !! | CATCAACTTGGAGGTACTCT+TGG | - | chr5_2:12404702-12404721 | Msa0757530:intron | 45.0% |
| GCATTATTGGGTCACTACCA+TGG | - | chr5_2:12404780-12404799 | Msa0757530:intron | 45.0% | |
| CCACATTGTGAAGAAGACCA+TGG | + | chr5_2:12404810-12404829 | None:intergenic | 45.0% | |
| CCATGGTCTTCTTCACAATG+TGG | - | chr5_2:12404807-12404826 | Msa0757530:intron | 45.0% | |
| TGGCACTCTCAAATCTCATG+TGG | + | chr5_2:12404979-12404998 | None:intergenic | 45.0% | |
| ! | CCCAAGTTGGATGCTATTGT+TGG | + | chr5_2:12405015-12405034 | None:intergenic | 45.0% |
| CTCCAGATTATGGCTCAATC+GGG | - | chr5_2:12405189-12405208 | Msa0757530:CDS | 45.0% | |
| !! | AAATCGGCTAGTTTGCTGGT+TGG | + | chr5_2:12405293-12405312 | None:intergenic | 45.0% |
| CAGTCGGTTAAGCCAGAAAT+CGG | + | chr5_2:12405309-12405328 | None:intergenic | 45.0% | |
| TGTGCAATGGGATCCTTGAT+AGG | - | chr5_2:12405550-12405569 | Msa0757530:CDS | 45.0% | |
| CAATGGGATCCTTGATAGGA+GGG | - | chr5_2:12405554-12405573 | Msa0757530:CDS | 45.0% | |
| AGCTATTGACCCTCCTATCA+AGG | + | chr5_2:12405566-12405585 | None:intergenic | 45.0% | |
| CGCGCAATTTAGTGCCTTTA+TGG | - | chr5_2:12405630-12405649 | Msa0757530:intron | 45.0% | |
| GGGACTACCTCAGAAAACAT+CGG | + | chr5_2:12405781-12405800 | None:intergenic | 45.0% | |
| AGGTAGTCCCAATCAAACAC+AGG | - | chr5_2:12405791-12405810 | Msa0757530:intron | 45.0% | |
| TCTGCAAGAATGCCAACCAA+AGG | + | chr5_2:12405874-12405893 | None:intergenic | 45.0% | |
| ACTCTGTCTGCTTGTGACTT+CGG | - | chr5_2:12406144-12406163 | Msa0757530:intron | 45.0% | |
| CTTGTGACTTCGGTCCTAAA+TGG | - | chr5_2:12406154-12406173 | Msa0757530:intron | 45.0% | |
| TATGGTTCCATCATGAGGTG+AGG | - | chr5_2:12406242-12406261 | Msa0757530:intron | 45.0% | |
| TTATCAGCCTCACCTCATGA+TGG | + | chr5_2:12406252-12406271 | None:intergenic | 45.0% | |
| GCAAATGTAGCCAAACGGAT+CGG | - | chr5_2:12406309-12406328 | Msa0757530:intron | 45.0% | |
| TAATTGCGTGAGATCCGCGA+AGG | - | chr5_2:12402620-12402639 | Msa0757530:three_prime_UTR | 50.0% | |
| GGTTTGAGAATGCGTGGAAG+TGG | + | chr5_2:12402779-12402798 | None:intergenic | 50.0% | |
| CGCCGAGTTTGACGAAATGA+CGG | - | chr5_2:12403054-12403073 | Msa0757530:exon | 50.0% | |
| AATGCAGGCCCGTCTGATTT+AGG | - | chr5_2:12403676-12403695 | Msa0757530:intron | 50.0% | |
| GGACTATCATCACCACTAGC+TGG | - | chr5_2:12403730-12403749 | Msa0757530:intron | 50.0% | |
| ! | CGCTTGCCACGATTTTAAGC+AGG | - | chr5_2:12403834-12403853 | Msa0757530:intron | 50.0% |
| AGGGAAGGAGTTAGAGGAGT+TGG | - | chr5_2:12403937-12403956 | Msa0757530:intron | 50.0% | |
| ! | CGGAATTGGAGGTGGTGTTA+TGG | - | chr5_2:12403993-12404012 | Msa0757530:intron | 50.0% |
| GTTATGGCTACTGTCATGGC+TGG | - | chr5_2:12404009-12404028 | Msa0757530:intron | 50.0% | |
| AAGAAGACCATGGCAGTCCA+TGG | + | chr5_2:12404800-12404819 | None:intergenic | 50.0% | |
| !! | TCTTGCAATAACGGTGCTGC+TGG | + | chr5_2:12404915-12404934 | None:intergenic | 50.0% |
| GACCCGATTGAGCCATAATC+TGG | + | chr5_2:12405194-12405213 | None:intergenic | 50.0% | |
| !! | CCAGAAATCGGCTAGTTTGC+TGG | + | chr5_2:12405297-12405316 | None:intergenic | 50.0% |
| ! | CCAGCAAACTAGCCGATTTC+TGG | - | chr5_2:12405294-12405313 | Msa0757530:CDS | 50.0% |
| ! | TCTGGCTTAACCGACTGAAC+CGG | - | chr5_2:12405312-12405331 | Msa0757530:CDS | 50.0% |
| AAAAATCGGACCGAACCAGC+CGG | + | chr5_2:12405334-12405353 | None:intergenic | 50.0% | |
| GCAATGGGATCCTTGATAGG+AGG | - | chr5_2:12405553-12405572 | Msa0757530:CDS | 50.0% | |
| CTCATCTGTTGCAGCACCTT+TGG | - | chr5_2:12405855-12405874 | Msa0757530:intron | 50.0% | |
| TCTGTTGCAGCACCTTTGGT+TGG | - | chr5_2:12405859-12405878 | Msa0757530:intron | 50.0% | |
| TGAGGCTCTTGCCTTGTCAA+AGG | - | chr5_2:12405948-12405967 | Msa0757530:intron | 50.0% | |
| GAGGCTCTTGCCTTGTCAAA+GGG | - | chr5_2:12405949-12405968 | Msa0757530:intron | 50.0% | |
| ! | ATCCGCGAAGGACGCTGATT+TGG | - | chr5_2:12402632-12402651 | Msa0757530:three_prime_UTR | 55.0% |
| CACCAAATCAGCGTCCTTCG+CGG | + | chr5_2:12402637-12402656 | None:intergenic | 55.0% | |
| CACGCTCCATTATAGCAGCC+AGG | + | chr5_2:12403606-12403625 | None:intergenic | 55.0% | |
| GGTACTGTAGGCGGAATTGG+AGG | - | chr5_2:12403982-12404001 | Msa0757530:intron | 55.0% | |
| ACTGTAGGCGGAATTGGAGG+TGG | - | chr5_2:12403985-12404004 | Msa0757530:intron | 55.0% | |
| GTAGGAGATCGCTCTCTACG+AGG | + | chr5_2:12404242-12404261 | None:intergenic | 55.0% | |
| ! | GTCACTACCATGGACTGCCA+TGG | - | chr5_2:12404790-12404809 | Msa0757530:intron | 55.0% |
| !! | CGCGAAGGACGCTGATTTGG+TGG | - | chr5_2:12402635-12402654 | Msa0757530:three_prime_UTR | 60.0% |
| GCTTAACCGACTGAACCGGC+TGG | - | chr5_2:12405316-12405335 | Msa0757530:CDS | 60.0% | |
| ! | ACCGACTGAACCGGCTGGTT+CGG | - | chr5_2:12405321-12405340 | Msa0757530:CDS | 60.0% |
| ! | ACCGAACCAGCCGGTTCAGT+CGG | + | chr5_2:12405325-12405344 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 12402562 | 12406608 | 12402562 | ID=Msa0757530;Name=Msa0757530 |
| chr5_2 | mRNA | 12402562 | 12406608 | 12402562 | ID=Msa0757530-mRNA-1;Parent=Msa0757530;Name=Msa0757530-mRNA-1;_AED=0.26;_eAED=0.26;_QI=144|1|1|1|1|1|4|510|501 |
| chr5_2 | exon | 12402562 | 12403670 | 12402562 | ID=Msa0757530-mRNA-1:exon:5569;Parent=Msa0757530-mRNA-1 |
| chr5_2 | exon | 12404328 | 12404503 | 12404328 | ID=Msa0757530-mRNA-1:exon:5568;Parent=Msa0757530-mRNA-1 |
| chr5_2 | exon | 12404989 | 12405615 | 12404989 | ID=Msa0757530-mRNA-1:exon:5567;Parent=Msa0757530-mRNA-1 |
| chr5_2 | exon | 12406361 | 12406608 | 12406361 | ID=Msa0757530-mRNA-1:exon:5566;Parent=Msa0757530-mRNA-1 |
| chr5_2 | five_prime_UTR | 12406465 | 12406608 | 12406465 | ID=Msa0757530-mRNA-1:five_prime_utr;Parent=Msa0757530-mRNA-1 |
| chr5_2 | CDS | 12406361 | 12406464 | 12406361 | ID=Msa0757530-mRNA-1:cds;Parent=Msa0757530-mRNA-1 |
| chr5_2 | CDS | 12404989 | 12405615 | 12404989 | ID=Msa0757530-mRNA-1:cds;Parent=Msa0757530-mRNA-1 |
| chr5_2 | CDS | 12404328 | 12404503 | 12404328 | ID=Msa0757530-mRNA-1:cds;Parent=Msa0757530-mRNA-1 |
| chr5_2 | CDS | 12403072 | 12403670 | 12403072 | ID=Msa0757530-mRNA-1:cds;Parent=Msa0757530-mRNA-1 |
| chr5_2 | three_prime_UTR | 12402562 | 12403071 | 12402562 | ID=Msa0757530-mRNA-1:three_prime_utr;Parent=Msa0757530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
