Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757510 | G7KC53 | 96.016 | 502 | 12 | 4 | 1 | 501 | 1 | 495 | 0.0 | 922 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0757460 | Msa0757510 | 0.970681 | 5.474332e-132 | -8.615850e-47 |
| Msa0757510 | Msa0757530 | 0.919592 | 3.710553e-87 | -8.615850e-47 |
| Msa0757510 | Msa0798820 | 0.976391 | 9.774343e-142 | -8.615850e-47 |
| Msa0757510 | Msa0837360 | 0.908279 | 2.034133e-81 | -8.615850e-47 |
| Msa0757510 | Msa1459930 | 0.818800 | 1.622822e-52 | -8.615850e-47 |
| Msa0200100 | Msa0757510 | 0.810809 | 9.582365e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757510 | MtrunA17_Chr5g0403601 | 96.016 | 502 | 12 | 4 | 1 | 501 | 1 | 495 | 0.0 | 922 |
| Msa0757510 | MtrunA17_Chr8g0382381 | 43.197 | 463 | 247 | 4 | 44 | 500 | 6 | 458 | 7.34e-124 | 372 |
| Msa0757510 | MtrunA17_Chr8g0382331 | 42.117 | 463 | 250 | 3 | 44 | 500 | 5 | 455 | 1.14e-121 | 366 |
| Msa0757510 | MtrunA17_Chr5g0425781 | 40.685 | 467 | 255 | 4 | 44 | 500 | 5 | 459 | 3.54e-118 | 357 |
| Msa0757510 | MtrunA17_Chr8g0382321 | 41.901 | 463 | 255 | 2 | 44 | 500 | 6 | 460 | 7.33e-111 | 337 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757510 | AT4G36790.1 | 69.124 | 502 | 141 | 5 | 1 | 501 | 1 | 489 | 0.0 | 676 |
| Msa0757510 | AT2G18590.1 | 57.018 | 456 | 188 | 3 | 51 | 500 | 19 | 472 | 2.40e-180 | 514 |
| Msa0757510 | AT5G10190.1 | 41.991 | 462 | 252 | 2 | 44 | 500 | 5 | 455 | 2.97e-122 | 367 |
| Msa0757510 | AT1G78130.1 | 39.957 | 463 | 263 | 4 | 44 | 500 | 5 | 458 | 2.39e-112 | 342 |
| Msa0757510 | AT5G10190.2 | 41.880 | 351 | 193 | 1 | 44 | 394 | 5 | 344 | 4.43e-87 | 271 |
| Msa0757510 | AT5G10190.3 | 39.169 | 337 | 189 | 2 | 169 | 500 | 1 | 326 | 4.81e-78 | 249 |
Find 138 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCGCAATTTAGTGCCTTTA+TGG | 0.152888 | 5_2:-12391715 | Msa0757510:CDS |
| ACATCATCTCCTCTTCTTTC+AGG | 0.153857 | 5_2:+12391271 | None:intergenic |
| AGCAATAAGTTCAAAGTATA+TGG | 0.193344 | 5_2:+12390818 | None:intergenic |
| TCATGGCTGGTCAGAAGTTT+TGG | 0.226566 | 5_2:-12393323 | Msa0757510:CDS |
| CGAAGATTTGAACTCCATTT+AGG | 0.228196 | 5_2:+12391177 | None:intergenic |
| AATGCAGGCCCGTCTGATTT+AGG | 0.243271 | 5_2:-12393669 | Msa0757510:CDS |
| GGAAAACGATGATTTGGATT+TGG | 0.247729 | 5_2:+12394592 | None:intergenic |
| ATTCCAAGTAATTGTCTTAC+AGG | 0.251672 | 5_2:-12392588 | Msa0757510:CDS |
| GCAAGTTTGAGTGCATTTAT+TGG | 0.252034 | 5_2:-12393264 | Msa0757510:CDS |
| CATTCATTGCTGATAGTTAT+AGG | 0.256064 | 5_2:-12393428 | Msa0757510:CDS |
| CACATGATTCGACCTGAATA+TGG | 0.266385 | 5_2:+12391738 | None:intergenic |
| CACAAGCAGACAGAGTTAAA+AGG | 0.272801 | 5_2:+12391208 | None:intergenic |
| TATCAACCTGGCTGCTATAA+TGG | 0.279651 | 5_2:-12393748 | Msa0757510:CDS |
| GGAGTTAGAGGAGTTGGATT+TGG | 0.291569 | 5_2:-12393402 | Msa0757510:CDS |
| CTCTTCTGTTGCAGCACCTT+TGG | 0.292837 | 5_2:-12391490 | Msa0757510:CDS |
| GAAAACGATGATTTGGATTT+GGG | 0.308169 | 5_2:+12394593 | None:intergenic |
| AGGGAAGGAGTTAGAGGAGT+TGG | 0.308211 | 5_2:-12393408 | Msa0757510:CDS |
| ATTGTCTTACAGGGCATTAT+TGG | 0.308907 | 5_2:-12392578 | Msa0757510:CDS |
| CATCATCTCCTCTTCTTTCA+GGG | 0.312070 | 5_2:+12391272 | None:intergenic |
| TTTGTGAATTTCTCTTGCTT+TGG | 0.320507 | 5_2:-12394687 | Msa0757510:five_prime_UTR |
| ACAATGTGGTTCGAACTAAT+TGG | 0.325301 | 5_2:-12392524 | Msa0757510:intron |
| TGGAGAGCTATAAATGGATT+TGG | 0.336581 | 5_2:-12393480 | Msa0757510:CDS |
| GGAAGTGGAAAACGATGATT+TGG | 0.348923 | 5_2:+12394586 | None:intergenic |
| ATTGGTACTGTAGGCGGAAT+TGG | 0.353907 | 5_2:-12393366 | Msa0757510:CDS |
| AGTTATAGGGAAGGAGTTAG+AGG | 0.355105 | 5_2:-12393414 | Msa0757510:CDS |
| ATCCGCGAAGGACGCTGATT+TGG | 0.357441 | 5_2:-12394715 | Msa0757510:five_prime_UTR |
| ACACAAATCTATCCATATTC+AGG | 0.362159 | 5_2:-12391750 | Msa0757510:CDS |
| ATTCATTGCTGATAGTTATA+GGG | 0.365814 | 5_2:-12393427 | Msa0757510:CDS |
| GAGTACTCACTTCATCTTCA+TGG | 0.375397 | 5_2:+12394550 | None:intergenic |
| AGCTATAAATGGATTTGGTT+TGG | 0.379471 | 5_2:-12393475 | Msa0757510:CDS |
| AGGGATGATTCTATCTATAA+TGG | 0.380942 | 5_2:-12392680 | Msa0757510:CDS |
| GCGCAATTTAGTGCCTTTAT+GGG | 0.381756 | 5_2:-12391714 | Msa0757510:CDS |
| ATTCTTGCAGAGAAAATGTT+TGG | 0.382692 | 5_2:-12391462 | Msa0757510:CDS |
| TTGTCTTACAGGGCATTATT+GGG | 0.383613 | 5_2:-12392577 | Msa0757510:CDS |
| TCGATTGTCTTGTCTTATCA+TGG | 0.385947 | 5_2:-12394660 | Msa0757510:exon |
| ATCATTGTCCTGTGTTTGAT+TGG | 0.387174 | 5_2:+12391546 | None:intergenic |
| CATCAACTTGGAGGTACTCT+TGG | 0.401100 | 5_2:-12392643 | Msa0757510:CDS |
| TTAATACCAAACATTTCAAA+AGG | 0.402906 | 5_2:-12391006 | Msa0757510:three_prime_UTR |
| CTTGTGACTTCGGTCCTAAA+TGG | 0.405691 | 5_2:-12391191 | Msa0757510:three_prime_UTR |
| AACTTTGATGACAGATTTAG+TGG | 0.406804 | 5_2:+12392616 | None:intergenic |
| AGTAAACATGAAACATTTGC+AGG | 0.414201 | 5_2:-12391152 | Msa0757510:three_prime_UTR |
| TGAGAATGGAATGCCCATAA+AGG | 0.423692 | 5_2:+12391701 | None:intergenic |
| TCAATGATGGCAATTCCATT+TGG | 0.426554 | 5_2:-12391366 | Msa0757510:CDS |
| TTTGCTATTGGATGTGCAAT+GGG | 0.426804 | 5_2:-12391807 | Msa0757510:CDS |
| ATGATGTTTAAATAGACCTT+AGG | 0.429607 | 5_2:+12390965 | None:intergenic |
| CGGAATTGGAGGTGGTGTTA+TGG | 0.435818 | 5_2:-12393352 | Msa0757510:CDS |
| CTAACTTCTTTGTAGACTGC+TGG | 0.445710 | 5_2:+12393702 | None:intergenic |
| TAGGTTACCTCACATTCATA+AGG | 0.446153 | 5_2:-12393650 | Msa0757510:CDS |
| TGAGGCTCTTGCCTTGTCAA+AGG | 0.450694 | 5_2:-12391397 | Msa0757510:CDS |
| TCTGTTGCAGCACCTTTGGT+TGG | 0.450921 | 5_2:-12391486 | Msa0757510:CDS |
| TCAGCTGAAGATCCTTTGAT+AGG | 0.451456 | 5_2:+12391417 | None:intergenic |
| TTCATAAGGAACTTTGTTCA+AGG | 0.451557 | 5_2:-12393636 | Msa0757510:CDS |
| ACAAGCAGACAGAGTTAAAA+GGG | 0.455125 | 5_2:+12391209 | None:intergenic |
| ATTGTATTATGTATTTAAGA+AGG | 0.457056 | 5_2:-12391319 | Msa0757510:CDS |
| TTAAATATGTCCGATCCGTT+TGG | 0.457641 | 5_2:+12391025 | None:intergenic |
| TTGCTATGGGAACATTCTGC+TGG | 0.459474 | 5_2:-12393557 | Msa0757510:CDS |
| CGCGAAGGACGCTGATTTGG+TGG | 0.461134 | 5_2:-12394712 | Msa0757510:five_prime_UTR |
| TTATGGGCATTCCATTCTCA+TGG | 0.462787 | 5_2:-12391698 | Msa0757510:CDS |
| CACAAGCAACACAATCCAAA+TGG | 0.463522 | 5_2:+12391351 | None:intergenic |
| GTTCCCATAGCAAGTATTGT+TGG | 0.463630 | 5_2:+12393567 | None:intergenic |
| GAGGCTCTTGCCTTGTCAAA+GGG | 0.464791 | 5_2:-12391396 | Msa0757510:CDS |
| AAAGGGTCTTCTTTCAATGA+TGG | 0.467546 | 5_2:-12391379 | Msa0757510:CDS |
| CGATTGTCTTGTCTTATCAT+GGG | 0.468458 | 5_2:-12394659 | Msa0757510:exon |
| TCATTGTCCTGTGTTTGATT+GGG | 0.470929 | 5_2:+12391547 | None:intergenic |
| ACTCTGTCTGCTTGTGACTT+CGG | 0.472536 | 5_2:-12391201 | Msa0757510:three_prime_UTR |
| TTATGGGACTAACTATAAGC+TGG | 0.478256 | 5_2:-12391611 | Msa0757510:CDS |
| ATTAACATTGTTAAAGTACA+AGG | 0.479093 | 5_2:+12390876 | None:intergenic |
| CTAAATGGAGTTCAAATCTT+CGG | 0.480480 | 5_2:-12391176 | Msa0757510:three_prime_UTR |
| CACCAAATCAGCGTCCTTCG+CGG | 0.486892 | 5_2:+12394713 | None:intergenic |
| GCAATGAATGACTGCAATGC+TGG | 0.486956 | 5_2:+12393441 | None:intergenic |
| CTAAGAAGAAACCATGAGAA+TGG | 0.487296 | 5_2:+12391687 | None:intergenic |
| TAGACCAACAATACTTGCTA+TGG | 0.488171 | 5_2:-12393571 | Msa0757510:CDS |
| TAATACCAAACATTTCAAAA+GGG | 0.488362 | 5_2:-12391005 | Msa0757510:three_prime_UTR |
| TTCTCACTAGCATCTTGAAT+GGG | 0.489483 | 5_2:+12393195 | None:intergenic |
| CAATTCAATAAAGCAACTAA+TGG | 0.494567 | 5_2:+12390777 | None:intergenic |
| GCAATAAGTTCAAAGTATAT+GGG | 0.500238 | 5_2:+12390819 | None:intergenic |
| TGCTATGGGAACATTCTGCT+GGG | 0.500869 | 5_2:-12393556 | Msa0757510:CDS |
| TGTGCAATGGGATCCTTGAT+AGG | 0.503894 | 5_2:-12391795 | Msa0757510:CDS |
| GCTAACAGCAGCTGTAGATA+AGG | 0.506088 | 5_2:+12393533 | None:intergenic |
| TTCACTCATTCTTATCAACC+TGG | 0.507417 | 5_2:-12393760 | Msa0757510:CDS |
| AGCTATTGACCCTCCTATCA+AGG | 0.512037 | 5_2:+12391782 | None:intergenic |
| TGCCCTGTAAGACAATTACT+TGG | 0.516786 | 5_2:+12392585 | None:intergenic |
| ATCAACTTGGAGGTACTCTT+GGG | 0.517727 | 5_2:-12392642 | Msa0757510:CDS |
| GAATTGTCTTATATTTGCTT+AGG | 0.519916 | 5_2:-12390760 | Msa0757510:three_prime_UTR |
| AGAAAACTAGTTACTGATTG+AGG | 0.527052 | 5_2:+12391657 | None:intergenic |
| ACAATTGCTTATACTTGAGA+TGG | 0.532079 | 5_2:-12391057 | Msa0757510:three_prime_UTR |
| ATTCTCACTAGCATCTTGAA+TGG | 0.533216 | 5_2:+12393194 | None:intergenic |
| GGACTAACTATAAGCTGGAA+TGG | 0.534983 | 5_2:-12391606 | Msa0757510:CDS |
| CACGCTCCATTATAGCAGCC+AGG | 0.535980 | 5_2:+12393742 | None:intergenic |
| AACTATAAGCTGGAATGGTA+CGG | 0.538107 | 5_2:-12391601 | Msa0757510:CDS |
| AGAAGAGTAGTTTGCGTGAA+CGG | 0.539793 | 5_2:-12391234 | Msa0757510:three_prime_UTR |
| GTTAGTGAAGCATTCAATGC+AGG | 0.545523 | 5_2:-12393684 | Msa0757510:CDS |
| ATGCTAGTGTGACATCAACT+TGG | 0.545853 | 5_2:-12392655 | Msa0757510:CDS |
| GGTTTGAGAATGCGTGGAAG+TGG | 0.548461 | 5_2:+12394571 | None:intergenic |
| GGACTATCATCACCACTAGC+TGG | 0.550906 | 5_2:-12393615 | Msa0757510:CDS |
| ACTGTAGGCGGAATTGGAGG+TGG | 0.551168 | 5_2:-12393360 | Msa0757510:CDS |
| AATGCAAACCCTGAAAGAAG+AGG | 0.551409 | 5_2:-12391280 | Msa0757510:CDS |
| AAATCTGTTGATCCTATCAA+AGG | 0.553054 | 5_2:-12391429 | Msa0757510:CDS |
| TCTTCAAGTAAAAGAAAATG+AGG | 0.553461 | 5_2:+12391128 | None:intergenic |
| GTTATGGCTACTGTCATGGC+TGG | 0.556439 | 5_2:-12393336 | Msa0757510:CDS |
| TGGTGTTATGGCTACTGTCA+TGG | 0.560251 | 5_2:-12393340 | Msa0757510:CDS |
| AATTTACACGACCTCTCCTA+AGG | 0.568662 | 5_2:-12390981 | Msa0757510:three_prime_UTR |
| CTTCATGGTTTGAGAATGCG+TGG | 0.577954 | 5_2:+12394565 | None:intergenic |
| GGTACTGTAGGCGGAATTGG+AGG | 0.579698 | 5_2:-12393363 | Msa0757510:CDS |
| CTAGTGTGACATCAACTTGG+AGG | 0.579784 | 5_2:-12392652 | Msa0757510:CDS |
| AGATGGCAAATGTAGCCAAA+CGG | 0.580720 | 5_2:-12391040 | Msa0757510:three_prime_UTR |
| AAGAAGACCATGGCAGTCCA+TGG | 0.581215 | 5_2:+12392548 | None:intergenic |
| TTATCAGCCTCACCTCATGA+TGG | 0.583162 | 5_2:+12391095 | None:intergenic |
| CAATGGGATCCTTGATAGGA+GGG | 0.586366 | 5_2:-12391791 | Msa0757510:CDS |
| CCATGGTCTTCTTCACAATG+TGG | 0.588693 | 5_2:-12392538 | Msa0757510:CDS |
| CAAAGTTCCTTATGAATGTG+AGG | 0.588860 | 5_2:+12393643 | None:intergenic |
| GCAATGGGATCCTTGATAGG+AGG | 0.591989 | 5_2:-12391792 | Msa0757510:CDS |
| AGACCAACAATACTTGCTAT+GGG | 0.595257 | 5_2:-12393570 | Msa0757510:CDS |
| GTCACTACCATGGACTGCCA+TGG | 0.600615 | 5_2:-12392555 | Msa0757510:CDS |
| GTGAGGTAACCTAAATCAGA+CGG | 0.604891 | 5_2:+12393660 | None:intergenic |
| CATCCACGTATAGTAAAACA+AGG | 0.606809 | 5_2:+12393238 | None:intergenic |
| GCATTATTGGGTCACTACCA+TGG | 0.609004 | 5_2:-12392565 | Msa0757510:CDS |
| GAGTATATGGTTCCATCATG+AGG | 0.610169 | 5_2:-12391107 | Msa0757510:three_prime_UTR |
| ATTGCTGATAGTTATAGGGA+AGG | 0.611447 | 5_2:-12393423 | Msa0757510:CDS |
| TTCCAAGTAATTGTCTTACA+GGG | 0.612324 | 5_2:-12392587 | Msa0757510:CDS |
| GCAAATGTAGCCAAACGGAT+CGG | 0.620635 | 5_2:-12391035 | Msa0757510:three_prime_UTR |
| TTAACATTGTTAAAGTACAA+GGG | 0.623156 | 5_2:+12390877 | None:intergenic |
| TGAGGTAACCTAAATCAGAC+GGG | 0.623759 | 5_2:+12393661 | None:intergenic |
| TTCTTAAATACATAATACAA+TGG | 0.630614 | 5_2:+12391321 | None:intergenic |
| CAAACTTGCCATCAAAACAA+AGG | 0.638977 | 5_2:+12393278 | None:intergenic |
| TGAAAGAAGACCCTTTGACA+AGG | 0.642266 | 5_2:+12391386 | None:intergenic |
| ACGCAACCTGCTTAAAATCG+TGG | 0.645780 | 5_2:+12393505 | None:intergenic |
| TCTGCAAGAATGCCAACCAA+AGG | 0.651073 | 5_2:+12391474 | None:intergenic |
| GTAAACATGAAACATTTGCA+GGG | 0.658169 | 5_2:-12391151 | Msa0757510:three_prime_UTR |
| TAATTGCGTGAGATCCGCGA+AGG | 0.664156 | 5_2:-12394727 | Msa0757510:five_prime_UTR |
| TATGGTTCCATCATGAGGTG+AGG | 0.665674 | 5_2:-12391102 | Msa0757510:three_prime_UTR |
| GTTTAAATAGACCTTAGGAG+AGG | 0.671149 | 5_2:+12390970 | None:intergenic |
| ATAACAAGTATACCAGCTAG+TGG | 0.681249 | 5_2:+12393603 | None:intergenic |
| TATCAAAGGATCTTCAGCTG+AGG | 0.682943 | 5_2:-12391415 | Msa0757510:CDS |
| AGGTAGTCCCAATCAAACAC+AGG | 0.688738 | 5_2:-12391554 | Msa0757510:CDS |
| GGGACTACCTCAGAAAACAT+CGG | 0.700159 | 5_2:+12391567 | None:intergenic |
| ATGCTAGTGAGAATTCCGAA+AGG | 0.706334 | 5_2:-12393185 | Msa0757510:intron |
| CCACATTGTGAAGAAGACCA+TGG | 0.717544 | 5_2:+12392538 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTTAGAATAAAATTTTAA+AGG | - | chr5_2:12391524-12391543 | Msa0757510:CDS | 10.0% |
| !!! | ACTTAGAATAAAATTTTAAA+GGG | - | chr5_2:12391525-12391544 | Msa0757510:CDS | 10.0% |
| !!! | AAATCTATTTTAAAAACCTT+TGG | + | chr5_2:12391145-12391164 | None:intergenic | 15.0% |
| !!! | TTTTTTTATGCAAAAACTAT+AGG | - | chr5_2:12391199-12391218 | Msa0757510:three_prime_UTR | 15.0% |
| !!! | TTTAGTTTTTGTTGAAATTA+CGG | - | chr5_2:12391301-12391320 | Msa0757510:CDS | 15.0% |
| !!! | ATATAATGAATTGCATTTTA+TGG | - | chr5_2:12391702-12391721 | Msa0757510:CDS | 15.0% |
| !!! | TATAATGAATTGCATTTTAT+GGG | - | chr5_2:12391703-12391722 | Msa0757510:CDS | 15.0% |
| !! | AAAATAAATCAAAAACTGAA+TGG | + | chr5_2:12392676-12392695 | None:intergenic | 15.0% |
| !! | TTCTTAAATACATAATACAA+TGG | + | chr5_2:12394225-12394244 | None:intergenic | 15.0% |
| !! | ATTGTATTATGTATTTAAGA+AGG | - | chr5_2:12394224-12394243 | Msa0757510:intron | 15.0% |
| !! | TTTAGTTAGAAGAATATTCA+TGG | - | chr5_2:12391077-12391096 | Msa0757510:three_prime_UTR | 20.0% |
| !! | TTTCAACAAAAACTAAATCT+TGG | + | chr5_2:12391298-12391317 | None:intergenic | 20.0% |
| !! | GTTAAATATATGCTTTGATT+TGG | - | chr5_2:12391547-12391566 | Msa0757510:CDS | 20.0% |
| !! | AATTGAAAGAAGTAAGTAAA+AGG | + | chr5_2:12391666-12391685 | None:intergenic | 20.0% |
| !! | TAAACAATATAACAGTTTGA+AGG | + | chr5_2:12392757-12392776 | None:intergenic | 20.0% |
| !! | GTAGATTATATAATTGTACA+AGG | - | chr5_2:12393250-12393269 | Msa0757510:CDS | 20.0% |
| !!! | GGTTCCAATATTTTAAAAAT+CGG | + | chr5_2:12393546-12393565 | None:intergenic | 20.0% |
| !!! | ACTTCTTCAAATTTTATGAA+AGG | - | chr5_2:12393597-12393616 | Msa0757510:CDS | 20.0% |
| !! | TTAATACCAAACATTTCAAA+AGG | - | chr5_2:12394537-12394556 | Msa0757510:intron | 20.0% |
| !! | TAATACCAAACATTTCAAAA+GGG | - | chr5_2:12394538-12394557 | Msa0757510:intron | 20.0% |
| !! | TCACTTAAATGCAAAAATAA+GGG | + | chr5_2:12394637-12394656 | None:intergenic | 20.0% |
| !! | TTAACATTGTTAAAGTACAA+GGG | + | chr5_2:12394669-12394688 | None:intergenic | 20.0% |
| !! | ATTAACATTGTTAAAGTACA+AGG | + | chr5_2:12394670-12394689 | None:intergenic | 20.0% |
| ! | GTTTATTATGCTAATGATCA+AGG | + | chr5_2:12391504-12391523 | None:intergenic | 25.0% |
| ! | CTTTGATATTGAGAAAAATG+AGG | - | chr5_2:12391595-12391614 | Msa0757510:CDS | 25.0% |
| ! | GAAGAAAATCATACAAAGTT+TGG | + | chr5_2:12391644-12391663 | None:intergenic | 25.0% |
| !! | AGAACAACAATACAGATTTT+TGG | - | chr5_2:12391751-12391770 | Msa0757510:CDS | 25.0% |
| ! | ATTCATTGCTGATAGTTATA+GGG | - | chr5_2:12392116-12392135 | Msa0757510:intron | 25.0% |
| !!! | TTTGGAGTAGTAAGTTTTAT+TGG | - | chr5_2:12392159-12392178 | Msa0757510:intron | 25.0% |
| ! | ACATTACTCATGTGAAATTT+AGG | - | chr5_2:12392404-12392423 | Msa0757510:intron | 25.0% |
| ! | AAATTTGAGCCTTTATCAAA+CGG | + | chr5_2:12392487-12392506 | None:intergenic | 25.0% |
| !!! | TTTGAAGGCATTTATTTACT+TGG | + | chr5_2:12392742-12392761 | None:intergenic | 25.0% |
| ! | ATGTAACAAAATACAAGAAC+AGG | - | chr5_2:12393290-12393309 | Msa0757510:CDS | 25.0% |
| ! | TATTATTATCAAAACCTGCA+TGG | + | chr5_2:12393693-12393712 | None:intergenic | 25.0% |
| ! | TCTTCAAGTAAAAGAAAATG+AGG | + | chr5_2:12394418-12394437 | None:intergenic | 25.0% |
| !!! | TCTTTTACTTGAAGAGTATA+TGG | - | chr5_2:12394423-12394442 | Msa0757510:intron | 25.0% |
| !!! | AATTTCCCTTTTGAAATGTT+TGG | + | chr5_2:12394546-12394565 | None:intergenic | 25.0% |
| ! | ATGATGTTTAAATAGACCTT+AGG | + | chr5_2:12394581-12394600 | None:intergenic | 25.0% |
| ! | GTCACTTAAATGCAAAAATA+AGG | + | chr5_2:12394638-12394657 | None:intergenic | 25.0% |
| ! | GCAATAAGTTCAAAGTATAT+GGG | + | chr5_2:12394727-12394746 | None:intergenic | 25.0% |
| ! | AGCAATAAGTTCAAAGTATA+TGG | + | chr5_2:12394728-12394747 | None:intergenic | 25.0% |
| ! | CAATTCAATAAAGCAACTAA+TGG | + | chr5_2:12394769-12394788 | None:intergenic | 25.0% |
| ! | GAATTGTCTTATATTTGCTT+AGG | - | chr5_2:12394783-12394802 | Msa0757510:five_prime_UTR | 25.0% |
| TTTGTGAATTTCTCTTGCTT+TGG | - | chr5_2:12390856-12390875 | Msa0757510:three_prime_UTR | 30.0% | |
| ! | AGATGTTGTGCTATGTTTTT+GGG | + | chr5_2:12390921-12390940 | None:intergenic | 30.0% |
| ! | TAGATGTTGTGCTATGTTTT+TGG | + | chr5_2:12390922-12390941 | None:intergenic | 30.0% |
| ! | GAAAACGATGATTTGGATTT+GGG | + | chr5_2:12390953-12390972 | None:intergenic | 30.0% |
| CAAAGAAAGAAAGAAACGTA+AGG | + | chr5_2:12391018-12391037 | None:intergenic | 30.0% | |
| ! | AGACTTAGAGAATTTTCCAA+AGG | - | chr5_2:12391126-12391145 | Msa0757510:three_prime_UTR | 30.0% |
| ACGATAGTTAGACAAAATCA+CGG | + | chr5_2:12391334-12391353 | None:intergenic | 30.0% | |
| AATTCAAACATGCACAAAAC+TGG | - | chr5_2:12391355-12391374 | Msa0757510:CDS | 30.0% | |
| ! | AAATCTGTATTGTTGTTCTG+TGG | + | chr5_2:12391750-12391769 | None:intergenic | 30.0% |
| TTCATAAGGAACTTTGTTCA+AGG | - | chr5_2:12391907-12391926 | Msa0757510:intron | 30.0% | |
| ! | AGCTATAAATGGATTTGGTT+TGG | - | chr5_2:12392068-12392087 | Msa0757510:intron | 30.0% |
| CATTCATTGCTGATAGTTAT+AGG | - | chr5_2:12392115-12392134 | Msa0757510:intron | 30.0% | |
| !!! | GTAAGTTTTATTGGTACTGT+AGG | - | chr5_2:12392168-12392187 | Msa0757510:intron | 30.0% |
| !!! | AATCCTTGTTTTACTATACG+TGG | - | chr5_2:12392302-12392321 | Msa0757510:intron | 30.0% |
| ! | ATGGGAGAAAATCTTTTTCT+TGG | + | chr5_2:12392333-12392352 | None:intergenic | 30.0% |
| ACCTAGTGAATTAAACTACA+TGG | - | chr5_2:12392537-12392556 | Msa0757510:CDS | 30.0% | |
| TCCATGTAGTTTAATTCACT+AGG | + | chr5_2:12392541-12392560 | None:intergenic | 30.0% | |
| TGAATTAAACTACATGGAAC+CGG | - | chr5_2:12392543-12392562 | Msa0757510:CDS | 30.0% | |
| GATTCTTTGTAGTCAAATAG+TGG | - | chr5_2:12392587-12392606 | Msa0757510:CDS | 30.0% | |
| AACTACTGATCAAAATCAGA+TGG | + | chr5_2:12392630-12392649 | None:intergenic | 30.0% | |
| GCTAAATTTCAGCATTCATT+CGG | + | chr5_2:12392701-12392720 | None:intergenic | 30.0% | |
| TTATTTGTCAGTTAGTCATG+AGG | + | chr5_2:12392783-12392802 | None:intergenic | 30.0% | |
| TGAATGCTTTCATATGTCTT+TGG | - | chr5_2:12392804-12392823 | Msa0757510:intron | 30.0% | |
| AGGGATGATTCTATCTATAA+TGG | - | chr5_2:12392863-12392882 | Msa0757510:intron | 30.0% | |
| ! | AACTTTGATGACAGATTTAG+TGG | + | chr5_2:12392930-12392949 | None:intergenic | 30.0% |
| ATTCCAAGTAATTGTCTTAC+AGG | - | chr5_2:12392955-12392974 | Msa0757510:intron | 30.0% | |
| TTCCAAGTAATTGTCTTACA+GGG | - | chr5_2:12392956-12392975 | Msa0757510:intron | 30.0% | |
| AAGTTGAGTTCTTGCAATAA+CGG | + | chr5_2:12393122-12393141 | None:intergenic | 30.0% | |
| TTATTGCAAGAACTCAACTT+TGG | - | chr5_2:12393122-12393141 | Msa0757510:intron | 30.0% | |
| AGTAAGTTAAAAACCCAAGT+TGG | + | chr5_2:12393226-12393245 | None:intergenic | 30.0% | |
| TTTGTCATCCGATTCAATAA+TGG | + | chr5_2:12393417-12393436 | None:intergenic | 30.0% | |
| !!! | CGGTCCGATTTTTAAAATAT+TGG | - | chr5_2:12393539-12393558 | Msa0757510:CDS | 30.0% |
| ATTACACCATTTCTACTACT+TGG | + | chr5_2:12393567-12393586 | None:intergenic | 30.0% | |
| AATAGCAAAAAGACTTAGGA+GGG | + | chr5_2:12393725-12393744 | None:intergenic | 30.0% | |
| ATCCAATAGCAAAAAGACTT+AGG | + | chr5_2:12393729-12393748 | None:intergenic | 30.0% | |
| ACACAAATCTATCCATATTC+AGG | - | chr5_2:12393793-12393812 | Msa0757510:CDS | 30.0% | |
| ! | AGAAAACTAGTTACTGATTG+AGG | + | chr5_2:12393889-12393908 | None:intergenic | 30.0% |
| ! | AAAAAAGAGTGTGATCGAAA+AGG | + | chr5_2:12393914-12393933 | None:intergenic | 30.0% |
| !!! | TTCGATCACACTCTTTTTTA+TGG | - | chr5_2:12393915-12393934 | Msa0757510:intron | 30.0% |
| !!! | TCGATCACACTCTTTTTTAT+GGG | - | chr5_2:12393916-12393935 | Msa0757510:intron | 30.0% |
| ATTCTTGCAGAGAAAATGTT+TGG | - | chr5_2:12394081-12394100 | Msa0757510:intron | 30.0% | |
| AAATCTGTTGATCCTATCAA+AGG | - | chr5_2:12394114-12394133 | Msa0757510:intron | 30.0% | |
| CTAAATGGAGTTCAAATCTT+CGG | - | chr5_2:12394367-12394386 | Msa0757510:intron | 30.0% | |
| AGTAAACATGAAACATTTGC+AGG | - | chr5_2:12394391-12394410 | Msa0757510:intron | 30.0% | |
| GTAAACATGAAACATTTGCA+GGG | - | chr5_2:12394392-12394411 | Msa0757510:intron | 30.0% | |
| ACAATTGCTTATACTTGAGA+TGG | - | chr5_2:12394486-12394505 | Msa0757510:intron | 30.0% | |
| AGTGTCAATCTAAAAAGTAG+AGG | + | chr5_2:12394609-12394628 | None:intergenic | 30.0% | |
| CTTAAATGCAAAAATAAGGG+AGG | + | chr5_2:12394634-12394653 | None:intergenic | 30.0% | |
| TCGATTGTCTTGTCTTATCA+TGG | - | chr5_2:12390883-12390902 | Msa0757510:three_prime_UTR | 35.0% | |
| CGATTGTCTTGTCTTATCAT+GGG | - | chr5_2:12390884-12390903 | Msa0757510:three_prime_UTR | 35.0% | |
| ! | GGAAAACGATGATTTGGATT+TGG | + | chr5_2:12390954-12390973 | None:intergenic | 35.0% |
| TTCACTCATTCTTATCAACC+TGG | - | chr5_2:12391783-12391802 | Msa0757510:CDS | 35.0% | |
| ! | TGCTGGAAGAAGATTTTCAT+CGG | + | chr5_2:12391827-12391846 | None:intergenic | 35.0% |
| TAGGTTACCTCACATTCATA+AGG | - | chr5_2:12391893-12391912 | Msa0757510:intron | 35.0% | |
| CAAAGTTCCTTATGAATGTG+AGG | + | chr5_2:12391903-12391922 | None:intergenic | 35.0% | |
| ATAACAAGTATACCAGCTAG+TGG | + | chr5_2:12391943-12391962 | None:intergenic | 35.0% | |
| ! | TAGACCAACAATACTTGCTA+TGG | - | chr5_2:12391972-12391991 | Msa0757510:intron | 35.0% |
| !! | AGACCAACAATACTTGCTAT+GGG | - | chr5_2:12391973-12391992 | Msa0757510:intron | 35.0% |
| ! | ATTTTAAGCAGGTTGCGTTT+TGG | - | chr5_2:12392043-12392062 | Msa0757510:intron | 35.0% |
| ! | TGGAGAGCTATAAATGGATT+TGG | - | chr5_2:12392063-12392082 | Msa0757510:intron | 35.0% |
| ATTGCTGATAGTTATAGGGA+AGG | - | chr5_2:12392120-12392139 | Msa0757510:intron | 35.0% | |
| !!! | AGTTTTATTGGTACTGTAGG+CGG | - | chr5_2:12392171-12392190 | Msa0757510:intron | 35.0% |
| CAAACTTGCCATCAAAACAA+AGG | + | chr5_2:12392268-12392287 | None:intergenic | 35.0% | |
| GCAAGTTTGAGTGCATTTAT+TGG | - | chr5_2:12392279-12392298 | Msa0757510:intron | 35.0% | |
| CATCCACGTATAGTAAAACA+AGG | + | chr5_2:12392308-12392327 | None:intergenic | 35.0% | |
| TTCTCACTAGCATCTTGAAT+GGG | + | chr5_2:12392351-12392370 | None:intergenic | 35.0% | |
| ATTCTCACTAGCATCTTGAA+TGG | + | chr5_2:12392352-12392371 | None:intergenic | 35.0% | |
| GAATGTTGTTCCTTACCTTT+CGG | + | chr5_2:12392376-12392395 | None:intergenic | 35.0% | |
| AGCTCAATACCGTTTGATAA+AGG | - | chr5_2:12392475-12392494 | Msa0757510:intron | 35.0% | |
| GAATTAAACTACATGGAACC+GGG | - | chr5_2:12392544-12392563 | Msa0757510:CDS | 35.0% | |
| TTTCCCTAAATTTCTGATCC+CGG | + | chr5_2:12392565-12392584 | None:intergenic | 35.0% | |
| !! | GAAGGCATTTATTTACTTGG+AGG | + | chr5_2:12392739-12392758 | None:intergenic | 35.0% |
| ! | ATTGTCTTACAGGGCATTAT+TGG | - | chr5_2:12392965-12392984 | Msa0757510:intron | 35.0% |
| ! | TTGTCTTACAGGGCATTATT+GGG | - | chr5_2:12392966-12392985 | Msa0757510:intron | 35.0% |
| ACAATGTGGTTCGAACTAAT+TGG | - | chr5_2:12393019-12393038 | Msa0757510:intron | 35.0% | |
| CAAATCTCATGTGGTATCTT+TGG | + | chr5_2:12393168-12393187 | None:intergenic | 35.0% | |
| TTGTTGGAGTGAAAAGTAGT+TGG | + | chr5_2:12393197-12393216 | None:intergenic | 35.0% | |
| !! | TTAGTTTTTAACGCACTGCT+TGG | + | chr5_2:12393344-12393363 | None:intergenic | 35.0% |
| CAGTGCGTTAAAAACTAAAC+TGG | - | chr5_2:12393346-12393365 | Msa0757510:CDS | 35.0% | |
| TTGGAACCAAGTAGTAGAAA+TGG | - | chr5_2:12393558-12393577 | Msa0757510:CDS | 35.0% | |
| ATTCATTGTGTCAAGCAAGT+AGG | + | chr5_2:12393663-12393682 | None:intergenic | 35.0% | |
| CAATAGCAAAAAGACTTAGG+AGG | + | chr5_2:12393726-12393745 | None:intergenic | 35.0% | |
| !! | CTCCTAAGTCTTTTTGCTAT+TGG | - | chr5_2:12393724-12393743 | Msa0757510:CDS | 35.0% |
| !!! | TTTTGCTATTGGATGTGCAA+TGG | - | chr5_2:12393735-12393754 | Msa0757510:CDS | 35.0% |
| !! | TTTGCTATTGGATGTGCAAT+GGG | - | chr5_2:12393736-12393755 | Msa0757510:CDS | 35.0% |
| CTAAGAAGAAACCATGAGAA+TGG | + | chr5_2:12393859-12393878 | None:intergenic | 35.0% | |
| TTATGGGACTAACTATAAGC+TGG | - | chr5_2:12393932-12393951 | Msa0757510:intron | 35.0% | |
| AACTATAAGCTGGAATGGTA+CGG | - | chr5_2:12393942-12393961 | Msa0757510:intron | 35.0% | |
| TCATTGTCCTGTGTTTGATT+GGG | + | chr5_2:12393999-12394018 | None:intergenic | 35.0% | |
| ATCATTGTCCTGTGTTTGAT+TGG | + | chr5_2:12394000-12394019 | None:intergenic | 35.0% | |
| ! | GCATTTGATAGAGCTTTTGA+AGG | - | chr5_2:12394024-12394043 | Msa0757510:intron | 35.0% |
| AAAGGGTCTTCTTTCAATGA+TGG | - | chr5_2:12394164-12394183 | Msa0757510:intron | 35.0% | |
| TCAATGATGGCAATTCCATT+TGG | - | chr5_2:12394177-12394196 | Msa0757510:intron | 35.0% | |
| ! | TTTGCATTCTAGCATTTTCG+CGG | + | chr5_2:12394251-12394270 | None:intergenic | 35.0% |
| ACAAGCAGACAGAGTTAAAA+GGG | + | chr5_2:12394337-12394356 | None:intergenic | 35.0% | |
| CGAAGATTTGAACTCCATTT+AGG | + | chr5_2:12394369-12394388 | None:intergenic | 35.0% | |
| TTAAATATGTCCGATCCGTT+TGG | + | chr5_2:12394521-12394540 | None:intergenic | 35.0% | |
| GTTTAAATAGACCTTAGGAG+AGG | + | chr5_2:12394576-12394595 | None:intergenic | 35.0% | |
| GGAAGTGGAAAACGATGATT+TGG | + | chr5_2:12390960-12390979 | None:intergenic | 40.0% | |
| GAGTACTCACTTCATCTTCA+TGG | + | chr5_2:12390996-12391015 | None:intergenic | 40.0% | |
| CTAAACGCTCACTTGTATGT+TGG | + | chr5_2:12391225-12391244 | None:intergenic | 40.0% | |
| TACCGTCATTTCGTCAAACT+CGG | + | chr5_2:12391255-12391274 | None:intergenic | 40.0% | |
| TTCTCCAAGCATCAGTTACA+CGG | - | chr5_2:12391427-12391446 | Msa0757510:CDS | 40.0% | |
| TATCAACCTGGCTGCTATAA+TGG | - | chr5_2:12391795-12391814 | Msa0757510:CDS | 40.0% | |
| CTAACTTCTTTGTAGACTGC+TGG | + | chr5_2:12391844-12391863 | None:intergenic | 40.0% | |
| ! | GTTAGTGAAGCATTCAATGC+AGG | - | chr5_2:12391859-12391878 | Msa0757510:intron | 40.0% |
| TGAGGTAACCTAAATCAGAC+GGG | + | chr5_2:12391885-12391904 | None:intergenic | 40.0% | |
| GTGAGGTAACCTAAATCAGA+CGG | + | chr5_2:12391886-12391905 | None:intergenic | 40.0% | |
| ! | GTTCCCATAGCAAGTATTGT+TGG | + | chr5_2:12391979-12391998 | None:intergenic | 40.0% |
| !!! | GCGTTTTGGAGAGCTATAAA+TGG | - | chr5_2:12392057-12392076 | Msa0757510:intron | 40.0% |
| AGTTATAGGGAAGGAGTTAG+AGG | - | chr5_2:12392129-12392148 | Msa0757510:intron | 40.0% | |
| !!! | CAGAAGTTTTGGGGAATAGA+TGG | - | chr5_2:12392231-12392250 | Msa0757510:intron | 40.0% |
| !!! | AGTTTTGGGGAATAGATGGA+TGG | - | chr5_2:12392235-12392254 | Msa0757510:intron | 40.0% |
| !!! | GAGATGTGCCTTTGTTTTGA+TGG | - | chr5_2:12392257-12392276 | Msa0757510:intron | 40.0% |
| ATGCTAGTGAGAATTCCGAA+AGG | - | chr5_2:12392358-12392377 | Msa0757510:intron | 40.0% | |
| AGTGAGAATTCCGAAAGGTA+AGG | - | chr5_2:12392363-12392382 | Msa0757510:intron | 40.0% | |
| ! | GCTCAAATTTTGTGCTCGAT+CGG | - | chr5_2:12392497-12392516 | Msa0757510:intron | 40.0% |
| ! | AAATTTTGTGCTCGATCGGA+TGG | - | chr5_2:12392501-12392520 | Msa0757510:intron | 40.0% |
| GAACCGGGATCAGAAATTTA+GGG | - | chr5_2:12392559-12392578 | Msa0757510:CDS | 40.0% | |
| TGTAGTCAAATAGTGGCTGT+AGG | - | chr5_2:12392594-12392613 | Msa0757510:CDS | 40.0% | |
| ATGCTAGTGTGACATCAACT+TGG | - | chr5_2:12392888-12392907 | Msa0757510:intron | 40.0% | |
| !! | ATCAACTTGGAGGTACTCTT+GGG | - | chr5_2:12392901-12392920 | Msa0757510:intron | 40.0% |
| TGCCCTGTAAGACAATTACT+TGG | + | chr5_2:12392961-12392980 | None:intergenic | 40.0% | |
| GTATCTTTGGACGACAAGAA+AGG | + | chr5_2:12393155-12393174 | None:intergenic | 40.0% | |
| TCCAACAATAGCATCCAACT+TGG | - | chr5_2:12393209-12393228 | Msa0757510:CDS | 40.0% | |
| CCAACAATAGCATCCAACTT+GGG | - | chr5_2:12393210-12393229 | Msa0757510:CDS | 40.0% | |
| CGGGTCAACCATTATTGAAT+CGG | - | chr5_2:12393406-12393425 | Msa0757510:CDS | 40.0% | |
| GTGTCAAGCAAGTAGGTAAA+AGG | + | chr5_2:12393656-12393675 | None:intergenic | 40.0% | |
| ! | AATGAATTTGCTCACCATGC+AGG | - | chr5_2:12393676-12393695 | Msa0757510:CDS | 40.0% |
| CACATGATTCGACCTGAATA+TGG | + | chr5_2:12393808-12393827 | None:intergenic | 40.0% | |
| GCGCAATTTAGTGCCTTTAT+GGG | - | chr5_2:12393829-12393848 | Msa0757510:intron | 40.0% | |
| TGAGAATGGAATGCCCATAA+AGG | + | chr5_2:12393845-12393864 | None:intergenic | 40.0% | |
| TTATGGGCATTCCATTCTCA+TGG | - | chr5_2:12393845-12393864 | Msa0757510:intron | 40.0% | |
| GGACTAACTATAAGCTGGAA+TGG | - | chr5_2:12393937-12393956 | Msa0757510:intron | 40.0% | |
| !! | AAATGCACCGATGTTTTCTG+AGG | - | chr5_2:12393969-12393988 | Msa0757510:intron | 40.0% |
| TCAGCTGAAGATCCTTTGAT+AGG | + | chr5_2:12394129-12394148 | None:intergenic | 40.0% | |
| TATCAAAGGATCTTCAGCTG+AGG | - | chr5_2:12394128-12394147 | Msa0757510:intron | 40.0% | |
| TGAAAGAAGACCCTTTGACA+AGG | + | chr5_2:12394160-12394179 | None:intergenic | 40.0% | |
| CACAAGCAACACAATCCAAA+TGG | + | chr5_2:12394195-12394214 | None:intergenic | 40.0% | |
| AATGCAAACCCTGAAAGAAG+AGG | - | chr5_2:12394263-12394282 | Msa0757510:intron | 40.0% | |
| CATCATCTCCTCTTCTTTCA+GGG | + | chr5_2:12394274-12394293 | None:intergenic | 40.0% | |
| ACATCATCTCCTCTTCTTTC+AGG | + | chr5_2:12394275-12394294 | None:intergenic | 40.0% | |
| ! | AGAAGAGTAGTTTGCGTGAA+CGG | - | chr5_2:12394309-12394328 | Msa0757510:intron | 40.0% |
| CACAAGCAGACAGAGTTAAA+AGG | + | chr5_2:12394338-12394357 | None:intergenic | 40.0% | |
| GAGTATATGGTTCCATCATG+AGG | - | chr5_2:12394436-12394455 | Msa0757510:intron | 40.0% | |
| AGATGGCAAATGTAGCCAAA+CGG | - | chr5_2:12394503-12394522 | Msa0757510:intron | 40.0% | |
| AATTTACACGACCTCTCCTA+AGG | - | chr5_2:12394562-12394581 | Msa0757510:CDS | 40.0% | |
| CTTCATGGTTTGAGAATGCG+TGG | + | chr5_2:12390981-12391000 | None:intergenic | 45.0% | |
| TACTCCGTGTAACTGATGCT+TGG | + | chr5_2:12391434-12391453 | None:intergenic | 45.0% | |
| TTGCTATGGGAACATTCTGC+TGG | - | chr5_2:12391986-12392005 | Msa0757510:intron | 45.0% | |
| TGCTATGGGAACATTCTGCT+GGG | - | chr5_2:12391987-12392006 | Msa0757510:intron | 45.0% | |
| GCTAACAGCAGCTGTAGATA+AGG | + | chr5_2:12392013-12392032 | None:intergenic | 45.0% | |
| ACGCAACCTGCTTAAAATCG+TGG | + | chr5_2:12392041-12392060 | None:intergenic | 45.0% | |
| GCAATGAATGACTGCAATGC+TGG | + | chr5_2:12392105-12392124 | None:intergenic | 45.0% | |
| GGAGTTAGAGGAGTTGGATT+TGG | - | chr5_2:12392141-12392160 | Msa0757510:intron | 45.0% | |
| ATTGGTACTGTAGGCGGAAT+TGG | - | chr5_2:12392177-12392196 | Msa0757510:intron | 45.0% | |
| !! | TGGTGTTATGGCTACTGTCA+TGG | - | chr5_2:12392203-12392222 | Msa0757510:intron | 45.0% |
| !! | TCATGGCTGGTCAGAAGTTT+TGG | - | chr5_2:12392220-12392239 | Msa0757510:intron | 45.0% |
| !! | CATGGCTGGTCAGAAGTTTT+GGG | - | chr5_2:12392221-12392240 | Msa0757510:intron | 45.0% |
| !! | ATGGCTGGTCAGAAGTTTTG+GGG | - | chr5_2:12392222-12392241 | Msa0757510:intron | 45.0% |
| !! | GCTGCTGACTCAATGAATGT+AGG | + | chr5_2:12392458-12392477 | None:intergenic | 45.0% |
| GGAACCGGGATCAGAAATTT+AGG | - | chr5_2:12392558-12392577 | Msa0757510:CDS | 45.0% | |
| ! | AATCAGCTTTGTGTGTCAGC+AGG | - | chr5_2:12392843-12392862 | Msa0757510:intron | 45.0% |
| ! | ATCAGCTTTGTGTGTCAGCA+GGG | - | chr5_2:12392844-12392863 | Msa0757510:intron | 45.0% |
| CTAGTGTGACATCAACTTGG+AGG | - | chr5_2:12392891-12392910 | Msa0757510:intron | 45.0% | |
| !! | CATCAACTTGGAGGTACTCT+TGG | - | chr5_2:12392900-12392919 | Msa0757510:intron | 45.0% |
| GCATTATTGGGTCACTACCA+TGG | - | chr5_2:12392978-12392997 | Msa0757510:intron | 45.0% | |
| CCACATTGTGAAGAAGACCA+TGG | + | chr5_2:12393008-12393027 | None:intergenic | 45.0% | |
| CCATGGTCTTCTTCACAATG+TGG | - | chr5_2:12393005-12393024 | Msa0757510:intron | 45.0% | |
| TGGCACTCTCAAATCTCATG+TGG | + | chr5_2:12393177-12393196 | None:intergenic | 45.0% | |
| ! | CCCAAGTTGGATGCTATTGT+TGG | + | chr5_2:12393213-12393232 | None:intergenic | 45.0% |
| ATCCAATTAGCGAGATCTCC+AGG | - | chr5_2:12393371-12393390 | Msa0757510:CDS | 45.0% | |
| AACCTGGAGATCTCGCTAAT+TGG | + | chr5_2:12393376-12393395 | None:intergenic | 45.0% | |
| TTAGCGAGATCTCCAGGTTA+TGG | - | chr5_2:12393377-12393396 | Msa0757510:CDS | 45.0% | |
| TCTCCAGGTTATGGCTCAAT+CGG | - | chr5_2:12393386-12393405 | Msa0757510:CDS | 45.0% | |
| !! | AAATCGGCTAGTTTGCTGGT+TGG | + | chr5_2:12393491-12393510 | None:intergenic | 45.0% |
| CAGTCGGTTAAGCCAGAAAT+CGG | + | chr5_2:12393507-12393526 | None:intergenic | 45.0% | |
| TGTGCAATGGGATCCTTGAT+AGG | - | chr5_2:12393748-12393767 | Msa0757510:CDS | 45.0% | |
| CAATGGGATCCTTGATAGGA+GGG | - | chr5_2:12393752-12393771 | Msa0757510:CDS | 45.0% | |
| AGCTATTGACCCTCCTATCA+AGG | + | chr5_2:12393764-12393783 | None:intergenic | 45.0% | |
| CGCGCAATTTAGTGCCTTTA+TGG | - | chr5_2:12393828-12393847 | Msa0757510:intron | 45.0% | |
| GGGACTACCTCAGAAAACAT+CGG | + | chr5_2:12393979-12393998 | None:intergenic | 45.0% | |
| AGGTAGTCCCAATCAAACAC+AGG | - | chr5_2:12393989-12394008 | Msa0757510:intron | 45.0% | |
| TCTGCAAGAATGCCAACCAA+AGG | + | chr5_2:12394072-12394091 | None:intergenic | 45.0% | |
| ACTCTGTCTGCTTGTGACTT+CGG | - | chr5_2:12394342-12394361 | Msa0757510:intron | 45.0% | |
| CTTGTGACTTCGGTCCTAAA+TGG | - | chr5_2:12394352-12394371 | Msa0757510:intron | 45.0% | |
| TATGGTTCCATCATGAGGTG+AGG | - | chr5_2:12394441-12394460 | Msa0757510:intron | 45.0% | |
| TTATCAGCCTCACCTCATGA+TGG | + | chr5_2:12394451-12394470 | None:intergenic | 45.0% | |
| GCAAATGTAGCCAAACGGAT+CGG | - | chr5_2:12394508-12394527 | Msa0757510:intron | 45.0% | |
| TAATTGCGTGAGATCCGCGA+AGG | - | chr5_2:12390816-12390835 | Msa0757510:three_prime_UTR | 50.0% | |
| GGTTTGAGAATGCGTGGAAG+TGG | + | chr5_2:12390975-12390994 | None:intergenic | 50.0% | |
| CGCCGAGTTTGACGAAATGA+CGG | - | chr5_2:12391250-12391269 | Msa0757510:exon | 50.0% | |
| AATGCAGGCCCGTCTGATTT+AGG | - | chr5_2:12391874-12391893 | Msa0757510:intron | 50.0% | |
| GGACTATCATCACCACTAGC+TGG | - | chr5_2:12391928-12391947 | Msa0757510:intron | 50.0% | |
| ! | CGCTTGCCACGATTTTAAGC+AGG | - | chr5_2:12392032-12392051 | Msa0757510:intron | 50.0% |
| AGGGAAGGAGTTAGAGGAGT+TGG | - | chr5_2:12392135-12392154 | Msa0757510:intron | 50.0% | |
| ! | CGGAATTGGAGGTGGTGTTA+TGG | - | chr5_2:12392191-12392210 | Msa0757510:intron | 50.0% |
| GTTATGGCTACTGTCATGGC+TGG | - | chr5_2:12392207-12392226 | Msa0757510:intron | 50.0% | |
| AAGAAGACCATGGCAGTCCA+TGG | + | chr5_2:12392998-12393017 | None:intergenic | 50.0% | |
| !! | TCTTGCAATAACGGTGCTGC+TGG | + | chr5_2:12393113-12393132 | None:intergenic | 50.0% |
| CTCCAGGTTATGGCTCAATC+GGG | - | chr5_2:12393387-12393406 | Msa0757510:CDS | 50.0% | |
| !! | CCAGAAATCGGCTAGTTTGC+TGG | + | chr5_2:12393495-12393514 | None:intergenic | 50.0% |
| ! | CCAGCAAACTAGCCGATTTC+TGG | - | chr5_2:12393492-12393511 | Msa0757510:CDS | 50.0% |
| ! | TCTGGCTTAACCGACTGAAC+CGG | - | chr5_2:12393510-12393529 | Msa0757510:CDS | 50.0% |
| AAAAATCGGACCGAACCAGC+CGG | + | chr5_2:12393532-12393551 | None:intergenic | 50.0% | |
| GCAATGGGATCCTTGATAGG+AGG | - | chr5_2:12393751-12393770 | Msa0757510:CDS | 50.0% | |
| CTCTTCTGTTGCAGCACCTT+TGG | - | chr5_2:12394053-12394072 | Msa0757510:intron | 50.0% | |
| TCTGTTGCAGCACCTTTGGT+TGG | - | chr5_2:12394057-12394076 | Msa0757510:intron | 50.0% | |
| TGAGGCTCTTGCCTTGTCAA+AGG | - | chr5_2:12394146-12394165 | Msa0757510:intron | 50.0% | |
| GAGGCTCTTGCCTTGTCAAA+GGG | - | chr5_2:12394147-12394166 | Msa0757510:intron | 50.0% | |
| ! | ATCCGCGAAGGACGCTGATT+TGG | - | chr5_2:12390828-12390847 | Msa0757510:three_prime_UTR | 55.0% |
| CACCAAATCAGCGTCCTTCG+CGG | + | chr5_2:12390833-12390852 | None:intergenic | 55.0% | |
| CACGCTCCATTATAGCAGCC+AGG | + | chr5_2:12391804-12391823 | None:intergenic | 55.0% | |
| GGTACTGTAGGCGGAATTGG+AGG | - | chr5_2:12392180-12392199 | Msa0757510:intron | 55.0% | |
| ACTGTAGGCGGAATTGGAGG+TGG | - | chr5_2:12392183-12392202 | Msa0757510:intron | 55.0% | |
| GTAGGAGATCGCTCTCTACG+AGG | + | chr5_2:12392440-12392459 | None:intergenic | 55.0% | |
| ! | GTCACTACCATGGACTGCCA+TGG | - | chr5_2:12392988-12393007 | Msa0757510:intron | 55.0% |
| GACCCGATTGAGCCATAACC+TGG | + | chr5_2:12393392-12393411 | None:intergenic | 55.0% | |
| !! | CGCGAAGGACGCTGATTTGG+TGG | - | chr5_2:12390831-12390850 | Msa0757510:three_prime_UTR | 60.0% |
| GCTTAACCGACTGAACCGGC+TGG | - | chr5_2:12393514-12393533 | Msa0757510:CDS | 60.0% | |
| ! | ACCGACTGAACCGGCTGGTT+CGG | - | chr5_2:12393519-12393538 | Msa0757510:CDS | 60.0% |
| ! | ACCGAACCAGCCGGTTCAGT+CGG | + | chr5_2:12393523-12393542 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 12390758 | 12394807 | 12390758 | ID=Msa0757510;Name=Msa0757510 |
| chr5_2 | mRNA | 12390758 | 12394807 | 12390758 | ID=Msa0757510-mRNA-1;Parent=Msa0757510;Name=Msa0757510-mRNA-1;_AED=0.26;_eAED=0.26;_QI=144|1|1|1|1|1|4|511|501 |
| chr5_2 | exon | 12390758 | 12391867 | 12390758 | ID=Msa0757510-mRNA-1:exon:5565;Parent=Msa0757510-mRNA-1 |
| chr5_2 | exon | 12392525 | 12392700 | 12392525 | ID=Msa0757510-mRNA-1:exon:5564;Parent=Msa0757510-mRNA-1 |
| chr5_2 | exon | 12393186 | 12393812 | 12393186 | ID=Msa0757510-mRNA-1:exon:5563;Parent=Msa0757510-mRNA-1 |
| chr5_2 | exon | 12394560 | 12394807 | 12394560 | ID=Msa0757510-mRNA-1:exon:5562;Parent=Msa0757510-mRNA-1 |
| chr5_2 | five_prime_UTR | 12394664 | 12394807 | 12394664 | ID=Msa0757510-mRNA-1:five_prime_utr;Parent=Msa0757510-mRNA-1 |
| chr5_2 | CDS | 12394560 | 12394663 | 12394560 | ID=Msa0757510-mRNA-1:cds;Parent=Msa0757510-mRNA-1 |
| chr5_2 | CDS | 12393186 | 12393812 | 12393186 | ID=Msa0757510-mRNA-1:cds;Parent=Msa0757510-mRNA-1 |
| chr5_2 | CDS | 12392525 | 12392700 | 12392525 | ID=Msa0757510-mRNA-1:cds;Parent=Msa0757510-mRNA-1 |
| chr5_2 | CDS | 12391269 | 12391867 | 12391269 | ID=Msa0757510-mRNA-1:cds;Parent=Msa0757510-mRNA-1 |
| chr5_2 | three_prime_UTR | 12390758 | 12391268 | 12390758 | ID=Msa0757510-mRNA-1:three_prime_utr;Parent=Msa0757510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
