Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837360 | XP_003611927.2 | 98.932 | 468 | 5 | 0 | 3 | 470 | 28 | 495 | 0.0 | 949 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837360 | G7KC53 | 98.932 | 468 | 5 | 0 | 3 | 470 | 28 | 495 | 0.0 | 949 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0757460 | Msa0837360 | 0.897596 | 1.206089e-76 | -8.615850e-47 |
| Msa0757510 | Msa0837360 | 0.908279 | 2.034133e-81 | -8.615850e-47 |
| Msa0757530 | Msa0837360 | 0.846612 | 1.946986e-59 | -8.615850e-47 |
| Msa0798820 | Msa0837360 | 0.889436 | 2.427153e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837360 | MtrunA17_Chr5g0403601 | 98.932 | 468 | 5 | 0 | 3 | 470 | 28 | 495 | 0.0 | 949 |
| Msa0837360 | MtrunA17_Chr8g0382381 | 43.197 | 463 | 247 | 4 | 13 | 469 | 6 | 458 | 2.60e-124 | 372 |
| Msa0837360 | MtrunA17_Chr8g0382331 | 42.117 | 463 | 250 | 3 | 13 | 469 | 5 | 455 | 4.20e-122 | 366 |
| Msa0837360 | MtrunA17_Chr5g0425781 | 40.685 | 467 | 255 | 4 | 13 | 469 | 5 | 459 | 9.83e-119 | 357 |
| Msa0837360 | MtrunA17_Chr8g0382321 | 41.901 | 463 | 255 | 2 | 13 | 469 | 6 | 460 | 2.64e-111 | 337 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837360 | AT4G36790.1 | 72.187 | 471 | 118 | 4 | 1 | 470 | 31 | 489 | 0.0 | 671 |
| Msa0837360 | AT2G18590.1 | 57.018 | 456 | 188 | 3 | 20 | 469 | 19 | 472 | 0.0 | 514 |
| Msa0837360 | AT5G10190.1 | 41.991 | 462 | 252 | 2 | 13 | 469 | 5 | 455 | 1.42e-122 | 367 |
| Msa0837360 | AT1G78130.1 | 39.957 | 463 | 263 | 4 | 13 | 469 | 5 | 458 | 6.00e-113 | 342 |
| Msa0837360 | AT5G10190.2 | 41.880 | 351 | 193 | 1 | 13 | 363 | 5 | 344 | 2.10e-87 | 271 |
| Msa0837360 | AT5G10190.3 | 39.169 | 337 | 189 | 2 | 138 | 469 | 1 | 326 | 1.39e-78 | 249 |
Find 131 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCGCAATTTAGTGCCTTTA+TGG | 0.152888 | 5_4:-11349510 | Msa0837360:CDS |
| ACATCATCTCCTCTTCTTTC+AGG | 0.153857 | 5_4:+11349066 | None:intergenic |
| AGCAATAAGTTCAAAGTATA+TGG | 0.193344 | 5_4:+11348613 | None:intergenic |
| TCATGGCTGGTCAGAAGTTT+TGG | 0.226566 | 5_4:-11351118 | Msa0837360:CDS |
| CGAAGATTTGAACTCCATTT+AGG | 0.228196 | 5_4:+11348972 | None:intergenic |
| AATGCAGGCCCGTCTGATTT+AGG | 0.243271 | 5_4:-11351464 | Msa0837360:CDS |
| GGAAAACGATGATTTGGATT+TGG | 0.247729 | 5_4:+11352402 | None:intergenic |
| ATTCCAAGTAATTGTCTTAC+AGG | 0.251672 | 5_4:-11350383 | Msa0837360:CDS |
| GCAAGTTTGAGTGCATTTAT+TGG | 0.252034 | 5_4:-11351059 | Msa0837360:CDS |
| CATTCATTGCTGATAGTTAT+AGG | 0.256064 | 5_4:-11351223 | Msa0837360:CDS |
| CACATGATTCGACCTGAATA+TGG | 0.266385 | 5_4:+11349533 | None:intergenic |
| CACAAGCAGACAGAGTTAAA+AGG | 0.272801 | 5_4:+11349003 | None:intergenic |
| TATCAACCTGGCTGCTATAA+TGG | 0.279651 | 5_4:-11351543 | Msa0837360:CDS |
| GGAGTTAGAGGAGTTGGATT+TGG | 0.291569 | 5_4:-11351197 | Msa0837360:CDS |
| CTCTTCTGTTGCAGCACCTT+TGG | 0.292837 | 5_4:-11349285 | Msa0837360:CDS |
| GAAAACGATGATTTGGATTT+GGG | 0.308169 | 5_4:+11352403 | None:intergenic |
| AGGGAAGGAGTTAGAGGAGT+TGG | 0.308211 | 5_4:-11351203 | Msa0837360:CDS |
| ATTGTCTTACAGGGCATTAT+TGG | 0.308907 | 5_4:-11350373 | Msa0837360:CDS |
| CATCATCTCCTCTTCTTTCA+GGG | 0.312070 | 5_4:+11349067 | None:intergenic |
| TGGAGAGCTATAAATGGATT+TGG | 0.336581 | 5_4:-11351275 | Msa0837360:CDS |
| ACAATGTGGTTCGAGCTAAT+TGG | 0.345605 | 5_4:-11350319 | Msa0837360:intron |
| GGAAGTGGAAAACGATGATT+TGG | 0.348923 | 5_4:+11352396 | None:intergenic |
| ATTGGTACTGTAGGCGGAAT+TGG | 0.353907 | 5_4:-11351161 | Msa0837360:CDS |
| AGTTATAGGGAAGGAGTTAG+AGG | 0.355105 | 5_4:-11351209 | Msa0837360:CDS |
| ACACAAATCTATCCATATTC+AGG | 0.362159 | 5_4:-11349545 | Msa0837360:CDS |
| ATTCATTGCTGATAGTTATA+GGG | 0.365814 | 5_4:-11351222 | Msa0837360:CDS |
| GAGTACTCACTTCATCTTCA+TGG | 0.375397 | 5_4:+11352360 | None:intergenic |
| AGCTATAAATGGATTTGGTT+TGG | 0.379471 | 5_4:-11351270 | Msa0837360:CDS |
| AGGGATGATTCTATCTATAA+TGG | 0.380942 | 5_4:-11350475 | Msa0837360:CDS |
| GCGCAATTTAGTGCCTTTAT+GGG | 0.381756 | 5_4:-11349509 | Msa0837360:CDS |
| ATTCTTGCAGAGAAAATGTT+TGG | 0.382692 | 5_4:-11349257 | Msa0837360:CDS |
| TTGTCTTACAGGGCATTATT+GGG | 0.383613 | 5_4:-11350372 | Msa0837360:CDS |
| CATCAACTTGGAGGTACTCT+TGG | 0.401100 | 5_4:-11350438 | Msa0837360:CDS |
| TTAATACCAAACATTTCAAA+AGG | 0.402906 | 5_4:-11348801 | Msa0837360:three_prime_UTR |
| CTTGTGACTTCGGTCCTAAA+TGG | 0.405691 | 5_4:-11348986 | Msa0837360:three_prime_UTR |
| AACTTTGATGACAGATTTAG+TGG | 0.406804 | 5_4:+11350411 | None:intergenic |
| AGTAAACATGAAACATTTGC+AGG | 0.414201 | 5_4:-11348947 | Msa0837360:three_prime_UTR |
| TGAGAATGGAATGCCCATAA+AGG | 0.423692 | 5_4:+11349496 | None:intergenic |
| TCAATGATGGCAATTCCATT+TGG | 0.426554 | 5_4:-11349161 | Msa0837360:CDS |
| TTTGCTATTGGATGTGCAAT+GGG | 0.426804 | 5_4:-11349602 | Msa0837360:CDS |
| ATGATGTTTAAATAGACCTT+AGG | 0.429607 | 5_4:+11348760 | None:intergenic |
| CGGAATTGGAGGTGGTGTTA+TGG | 0.435818 | 5_4:-11351147 | Msa0837360:CDS |
| ATCATTGTCCTGTGTTTGAC+TGG | 0.444744 | 5_4:+11349341 | None:intergenic |
| CTAACTTCTTTGTAGACTGC+TGG | 0.445710 | 5_4:+11351497 | None:intergenic |
| TAGGTTACCTCACATTCATA+AGG | 0.446153 | 5_4:-11351445 | Msa0837360:CDS |
| TGAGGCTCTTGCCTTGTCAA+AGG | 0.450694 | 5_4:-11349192 | Msa0837360:CDS |
| TCTGTTGCAGCACCTTTGGT+TGG | 0.450921 | 5_4:-11349281 | Msa0837360:CDS |
| TCAGCTGAAGATCCTTTGAT+AGG | 0.451456 | 5_4:+11349212 | None:intergenic |
| TTCATAAGGAACTTTGTTCA+AGG | 0.451557 | 5_4:-11351431 | Msa0837360:CDS |
| ACAAGCAGACAGAGTTAAAA+GGG | 0.455125 | 5_4:+11349004 | None:intergenic |
| ATTGTATTATGTATTTAAGA+AGG | 0.457056 | 5_4:-11349114 | Msa0837360:CDS |
| TTAAATATGTCCGATCCGTT+TGG | 0.457641 | 5_4:+11348820 | None:intergenic |
| TTGCTATGGGAACATTCTGC+TGG | 0.459474 | 5_4:-11351352 | Msa0837360:CDS |
| TTATGGGCATTCCATTCTCA+TGG | 0.462787 | 5_4:-11349493 | Msa0837360:CDS |
| CACAAGCAACACAATCCAAA+TGG | 0.463522 | 5_4:+11349146 | None:intergenic |
| GTTCCCATAGCAAGTATTGT+TGG | 0.463630 | 5_4:+11351362 | None:intergenic |
| GAGGCTCTTGCCTTGTCAAA+GGG | 0.464791 | 5_4:-11349191 | Msa0837360:CDS |
| AAAGGGTCTTCTTTCAATGA+TGG | 0.467546 | 5_4:-11349174 | Msa0837360:CDS |
| ACTCTGTCTGCTTGTGACTT+CGG | 0.472536 | 5_4:-11348996 | Msa0837360:three_prime_UTR |
| TTATGGGACTAACTATAAGC+TGG | 0.478256 | 5_4:-11349406 | Msa0837360:CDS |
| ATTAACATTGTTAAAGTACA+AGG | 0.479093 | 5_4:+11348671 | None:intergenic |
| CTAAATGGAGTTCAAATCTT+CGG | 0.480480 | 5_4:-11348971 | Msa0837360:three_prime_UTR |
| GCAATGAATGACTGCAATGC+TGG | 0.486956 | 5_4:+11351236 | None:intergenic |
| CTAAGAAGAAACCATGAGAA+TGG | 0.487296 | 5_4:+11349482 | None:intergenic |
| TAGACCAACAATACTTGCTA+TGG | 0.488171 | 5_4:-11351366 | Msa0837360:CDS |
| TAATACCAAACATTTCAAAA+GGG | 0.488362 | 5_4:-11348800 | Msa0837360:three_prime_UTR |
| TTCTCACTAGCATCTTGAAT+GGG | 0.489483 | 5_4:+11350990 | None:intergenic |
| CAATTCAATAAAGCAACTAA+TGG | 0.494567 | 5_4:+11348572 | None:intergenic |
| GCAATAAGTTCAAAGTATAT+GGG | 0.500238 | 5_4:+11348614 | None:intergenic |
| TGCTATGGGAACATTCTGCT+GGG | 0.500869 | 5_4:-11351351 | Msa0837360:CDS |
| TGTGCAATGGGATCCTTGAT+AGG | 0.503894 | 5_4:-11349590 | Msa0837360:CDS |
| GCTAACAGCAGCTGTAGATA+AGG | 0.506088 | 5_4:+11351328 | None:intergenic |
| TTCACTCATTCTTATCAACC+TGG | 0.507417 | 5_4:-11351555 | Msa0837360:CDS |
| AGCTATTGACCCTCCTATCA+AGG | 0.512037 | 5_4:+11349577 | None:intergenic |
| TGCCCTGTAAGACAATTACT+TGG | 0.516786 | 5_4:+11350380 | None:intergenic |
| ATCAACTTGGAGGTACTCTT+GGG | 0.517727 | 5_4:-11350437 | Msa0837360:CDS |
| GAATTGTCTTATATTTGCTT+AGG | 0.519916 | 5_4:-11348555 | Msa0837360:three_prime_UTR |
| AGAAAACTAGTTACTGATTG+AGG | 0.527052 | 5_4:+11349452 | None:intergenic |
| ACAATTGCTTATACTTGAGA+TGG | 0.532079 | 5_4:-11348852 | Msa0837360:three_prime_UTR |
| ATTCTCACTAGCATCTTGAA+TGG | 0.533216 | 5_4:+11350989 | None:intergenic |
| GGACTAACTATAAGCTGGAA+TGG | 0.534983 | 5_4:-11349401 | Msa0837360:CDS |
| CACGCTCCATTATAGCAGCC+AGG | 0.535980 | 5_4:+11351537 | None:intergenic |
| AACTATAAGCTGGAATGGTA+CGG | 0.538107 | 5_4:-11349396 | Msa0837360:CDS |
| AGAAGAGTAGTTTGCGTGAA+CGG | 0.539793 | 5_4:-11349029 | Msa0837360:three_prime_UTR |
| GTTAGTGAAGCATTCAATGC+AGG | 0.545523 | 5_4:-11351479 | Msa0837360:CDS |
| ATGCTAGTGTGACATCAACT+TGG | 0.545853 | 5_4:-11350450 | Msa0837360:CDS |
| GGTTTGAGAATGCGTGGAAG+TGG | 0.548461 | 5_4:+11352381 | None:intergenic |
| GGACTATCATCACCACTAGC+TGG | 0.550906 | 5_4:-11351410 | Msa0837360:CDS |
| ACTGTAGGCGGAATTGGAGG+TGG | 0.551168 | 5_4:-11351155 | Msa0837360:CDS |
| AATGCAAACCCTGAAAGAAG+AGG | 0.551409 | 5_4:-11349075 | Msa0837360:CDS |
| AAATCTGTTGATCCTATCAA+AGG | 0.553054 | 5_4:-11349224 | Msa0837360:CDS |
| TCTTCAAGTAAAAGAAAATG+AGG | 0.553461 | 5_4:+11348923 | None:intergenic |
| GTTATGGCTACTGTCATGGC+TGG | 0.556439 | 5_4:-11351131 | Msa0837360:CDS |
| TGGTGTTATGGCTACTGTCA+TGG | 0.560251 | 5_4:-11351135 | Msa0837360:CDS |
| AATTTACACGACCTCTCCTA+AGG | 0.568662 | 5_4:-11348776 | Msa0837360:three_prime_UTR |
| CTTCATGGTTTGAGAATGCG+TGG | 0.577954 | 5_4:+11352375 | None:intergenic |
| GGTACTGTAGGCGGAATTGG+AGG | 0.579698 | 5_4:-11351158 | Msa0837360:CDS |
| CTAGTGTGACATCAACTTGG+AGG | 0.579784 | 5_4:-11350447 | Msa0837360:CDS |
| AGATGGCAAATGTAGCCAAA+CGG | 0.580720 | 5_4:-11348835 | Msa0837360:three_prime_UTR |
| AAGAAGACCATGGCAGTCCA+TGG | 0.581215 | 5_4:+11350343 | None:intergenic |
| TTATCAGCCTCACCTCATGA+TGG | 0.583162 | 5_4:+11348890 | None:intergenic |
| CAATGGGATCCTTGATAGGA+GGG | 0.586366 | 5_4:-11349586 | Msa0837360:CDS |
| CCATGGTCTTCTTCACAATG+TGG | 0.588693 | 5_4:-11350333 | Msa0837360:CDS |
| CAAAGTTCCTTATGAATGTG+AGG | 0.588860 | 5_4:+11351438 | None:intergenic |
| GCAATGGGATCCTTGATAGG+AGG | 0.591989 | 5_4:-11349587 | Msa0837360:CDS |
| AGACCAACAATACTTGCTAT+GGG | 0.595257 | 5_4:-11351365 | Msa0837360:CDS |
| GTCACTACCATGGACTGCCA+TGG | 0.600615 | 5_4:-11350350 | Msa0837360:CDS |
| GTGAGGTAACCTAAATCAGA+CGG | 0.604891 | 5_4:+11351455 | None:intergenic |
| CATCCACGTATAGTAAAACA+AGG | 0.606809 | 5_4:+11351033 | None:intergenic |
| GCATTATTGGGTCACTACCA+TGG | 0.609004 | 5_4:-11350360 | Msa0837360:CDS |
| GAGTATATGGTTCCATCATG+AGG | 0.610169 | 5_4:-11348902 | Msa0837360:three_prime_UTR |
| ATTGCTGATAGTTATAGGGA+AGG | 0.611447 | 5_4:-11351218 | Msa0837360:CDS |
| TTCCAAGTAATTGTCTTACA+GGG | 0.612324 | 5_4:-11350382 | Msa0837360:CDS |
| TCATTGTCCTGTGTTTGACT+GGG | 0.615327 | 5_4:+11349342 | None:intergenic |
| GCAAATGTAGCCAAACGGAT+CGG | 0.620635 | 5_4:-11348830 | Msa0837360:three_prime_UTR |
| TTAACATTGTTAAAGTACAA+GGG | 0.623156 | 5_4:+11348672 | None:intergenic |
| TGAGGTAACCTAAATCAGAC+GGG | 0.623759 | 5_4:+11351456 | None:intergenic |
| TTCTTAAATACATAATACAA+TGG | 0.630614 | 5_4:+11349116 | None:intergenic |
| CAAACTTGCCATCAAAACAA+AGG | 0.638977 | 5_4:+11351073 | None:intergenic |
| TGAAAGAAGACCCTTTGACA+AGG | 0.642266 | 5_4:+11349181 | None:intergenic |
| AGGTAGTCCCAGTCAAACAC+AGG | 0.645362 | 5_4:-11349349 | Msa0837360:CDS |
| ACGCAACCTGCTTAAAATCG+TGG | 0.645780 | 5_4:+11351300 | None:intergenic |
| TCTGCAAGAATGCCAACCAA+AGG | 0.651073 | 5_4:+11349269 | None:intergenic |
| GTAAACATGAAACATTTGCA+GGG | 0.658169 | 5_4:-11348946 | Msa0837360:three_prime_UTR |
| TATGGTTCCATCATGAGGTG+AGG | 0.665674 | 5_4:-11348897 | Msa0837360:three_prime_UTR |
| GTTTAAATAGACCTTAGGAG+AGG | 0.671149 | 5_4:+11348765 | None:intergenic |
| ATAACAAGTATACCAGCTAG+TGG | 0.681249 | 5_4:+11351398 | None:intergenic |
| TATCAAAGGATCTTCAGCTG+AGG | 0.682943 | 5_4:-11349210 | Msa0837360:CDS |
| GGGACTACCTCAGAAAACAT+CGG | 0.685585 | 5_4:+11349362 | None:intergenic |
| ATGCTAGTGAGAATTCCGAA+AGG | 0.706334 | 5_4:-11350980 | Msa0837360:intron |
| CCACATTGTGAAGAAGACCA+TGG | 0.717544 | 5_4:+11350333 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTTAGAATAAAATTTTAA+AGG | - | chr5_4:11349178-11349197 | Msa0837360:CDS | 10.0% |
| !!! | ACTTAGAATAAAATTTTAAA+GGG | - | chr5_4:11349179-11349198 | Msa0837360:CDS | 10.0% |
| !!! | AAATCTATTTTAAAAACCTT+TGG | + | chr5_4:11348799-11348818 | None:intergenic | 15.0% |
| !!! | TTTTTTTATGCAAAAACTAT+AGG | - | chr5_4:11348853-11348872 | Msa0837360:three_prime_UTR | 15.0% |
| !!! | TTTAGTTTTTGTTGAAATTA+CGG | - | chr5_4:11348955-11348974 | Msa0837360:three_prime_UTR | 15.0% |
| !!! | ATATAATGAATTGCATTTTA+TGG | - | chr5_4:11349356-11349375 | Msa0837360:CDS | 15.0% |
| !!! | TATAATGAATTGCATTTTAT+GGG | - | chr5_4:11349357-11349376 | Msa0837360:CDS | 15.0% |
| !! | AAAATAAATCAAAAACTGAA+TGG | + | chr5_4:11350330-11350349 | None:intergenic | 15.0% |
| !! | TTCTTAAATACATAATACAA+TGG | + | chr5_4:11351879-11351898 | None:intergenic | 15.0% |
| !! | ATTGTATTATGTATTTAAGA+AGG | - | chr5_4:11351878-11351897 | Msa0837360:intron | 15.0% |
| !! | TTTAGTTAGAAGAATATTCA+TGG | - | chr5_4:11348731-11348750 | Msa0837360:three_prime_UTR | 20.0% |
| !! | TTTCAACAAAAACTAAATCT+TGG | + | chr5_4:11348952-11348971 | None:intergenic | 20.0% |
| !! | GTTAAATATATGCTTTGATT+TGG | - | chr5_4:11349201-11349220 | Msa0837360:CDS | 20.0% |
| !! | AATTGAAAGAAGTAAGTAAA+AGG | + | chr5_4:11349320-11349339 | None:intergenic | 20.0% |
| !! | TAAACAATATAACAGTTTGA+AGG | + | chr5_4:11350411-11350430 | None:intergenic | 20.0% |
| !! | GTAGATTATATAATTGTACA+AGG | - | chr5_4:11350904-11350923 | Msa0837360:intron | 20.0% |
| !!! | GGTTCCAATATTTTAAAAAT+CGG | + | chr5_4:11351200-11351219 | None:intergenic | 20.0% |
| !!! | ACTTCTTCAAATTTTATGAA+AGG | - | chr5_4:11351251-11351270 | Msa0837360:CDS | 20.0% |
| !! | TTAATACCAAACATTTCAAA+AGG | - | chr5_4:11352191-11352210 | Msa0837360:intron | 20.0% |
| !! | TAATACCAAACATTTCAAAA+GGG | - | chr5_4:11352192-11352211 | Msa0837360:intron | 20.0% |
| !! | TCACTTAAATGCAAAAATAA+GGG | + | chr5_4:11352291-11352310 | None:intergenic | 20.0% |
| !! | TTAACATTGTTAAAGTACAA+GGG | + | chr5_4:11352323-11352342 | None:intergenic | 20.0% |
| !! | ATTAACATTGTTAAAGTACA+AGG | + | chr5_4:11352324-11352343 | None:intergenic | 20.0% |
| ! | GTTTATTATGCTAATGATCA+AGG | + | chr5_4:11349158-11349177 | None:intergenic | 25.0% |
| ! | CTTTGATATTGAGAAAAATG+AGG | - | chr5_4:11349249-11349268 | Msa0837360:CDS | 25.0% |
| ! | GAAGAAAATCATACAAAGTT+TGG | + | chr5_4:11349298-11349317 | None:intergenic | 25.0% |
| !! | AGAACAACAATACAGATTTT+TGG | - | chr5_4:11349405-11349424 | Msa0837360:CDS | 25.0% |
| ! | ATTCATTGCTGATAGTTATA+GGG | - | chr5_4:11349770-11349789 | Msa0837360:intron | 25.0% |
| !!! | TTTGGAGTAGTAAGTTTTAT+TGG | - | chr5_4:11349813-11349832 | Msa0837360:intron | 25.0% |
| ! | ACATTACTCATGTGAAATTT+AGG | - | chr5_4:11350058-11350077 | Msa0837360:intron | 25.0% |
| ! | AAATTTGAGCCTTTATCAAA+CGG | + | chr5_4:11350141-11350160 | None:intergenic | 25.0% |
| !!! | TTTGAAGGCATTTATTTACT+TGG | + | chr5_4:11350396-11350415 | None:intergenic | 25.0% |
| ! | ATGTAACAAAATACAAGAAC+AGG | - | chr5_4:11350944-11350963 | Msa0837360:intron | 25.0% |
| ! | TATTATTATCAAAACCTGCA+TGG | + | chr5_4:11351347-11351366 | None:intergenic | 25.0% |
| ! | TCTTCAAGTAAAAGAAAATG+AGG | + | chr5_4:11352072-11352091 | None:intergenic | 25.0% |
| !!! | TCTTTTACTTGAAGAGTATA+TGG | - | chr5_4:11352077-11352096 | Msa0837360:intron | 25.0% |
| !!! | AATTTCCCTTTTGAAATGTT+TGG | + | chr5_4:11352200-11352219 | None:intergenic | 25.0% |
| ! | ATGATGTTTAAATAGACCTT+AGG | + | chr5_4:11352235-11352254 | None:intergenic | 25.0% |
| ! | GTCACTTAAATGCAAAAATA+AGG | + | chr5_4:11352292-11352311 | None:intergenic | 25.0% |
| ! | GCAATAAGTTCAAAGTATAT+GGG | + | chr5_4:11352381-11352400 | None:intergenic | 25.0% |
| ! | AGCAATAAGTTCAAAGTATA+TGG | + | chr5_4:11352382-11352401 | None:intergenic | 25.0% |
| ! | CAATTCAATAAAGCAACTAA+TGG | + | chr5_4:11352423-11352442 | None:intergenic | 25.0% |
| ! | GAATTGTCTTATATTTGCTT+AGG | - | chr5_4:11352437-11352456 | Msa0837360:five_prime_UTR | 25.0% |
| ! | AGATGTTGTGCTATGTTTTT+GGG | + | chr5_4:11348560-11348579 | None:intergenic | 30.0% |
| ! | TAGATGTTGTGCTATGTTTT+TGG | + | chr5_4:11348561-11348580 | None:intergenic | 30.0% |
| ! | GAAAACGATGATTTGGATTT+GGG | + | chr5_4:11348592-11348611 | None:intergenic | 30.0% |
| GAAAGAAAGAAAGAAACGTA+AGG | + | chr5_4:11348657-11348676 | None:intergenic | 30.0% | |
| CTAAATAACAGAACAGAATC+AGG | + | chr5_4:11348716-11348735 | None:intergenic | 30.0% | |
| ! | AGACTTAGAGAATTTTCCAA+AGG | - | chr5_4:11348780-11348799 | Msa0837360:three_prime_UTR | 30.0% |
| ACGATAGTTAGACAAAATCA+CGG | + | chr5_4:11348988-11349007 | None:intergenic | 30.0% | |
| AATTCAAACATGCACAAAAC+TGG | - | chr5_4:11349009-11349028 | Msa0837360:three_prime_UTR | 30.0% | |
| ! | AAATCTGTATTGTTGTTCTG+TGG | + | chr5_4:11349404-11349423 | None:intergenic | 30.0% |
| TTCATAAGGAACTTTGTTCA+AGG | - | chr5_4:11349561-11349580 | Msa0837360:CDS | 30.0% | |
| ! | AGCTATAAATGGATTTGGTT+TGG | - | chr5_4:11349722-11349741 | Msa0837360:intron | 30.0% |
| CATTCATTGCTGATAGTTAT+AGG | - | chr5_4:11349769-11349788 | Msa0837360:intron | 30.0% | |
| !!! | GTAAGTTTTATTGGTACTGT+AGG | - | chr5_4:11349822-11349841 | Msa0837360:intron | 30.0% |
| !!! | AATCCTTGTTTTACTATACG+TGG | - | chr5_4:11349956-11349975 | Msa0837360:intron | 30.0% |
| ! | ATGGGAGAAAATCTTTTTCT+TGG | + | chr5_4:11349987-11350006 | None:intergenic | 30.0% |
| ACCTAGTGAATTAAACTACA+TGG | - | chr5_4:11350191-11350210 | Msa0837360:intron | 30.0% | |
| TCCATGTAGTTTAATTCACT+AGG | + | chr5_4:11350195-11350214 | None:intergenic | 30.0% | |
| TGAATTAAACTACATGGAAC+CGG | - | chr5_4:11350197-11350216 | Msa0837360:intron | 30.0% | |
| GATTCTTTGTAGTCAAATAG+TGG | - | chr5_4:11350241-11350260 | Msa0837360:intron | 30.0% | |
| AACTACTGATCAAAATCAGA+TGG | + | chr5_4:11350284-11350303 | None:intergenic | 30.0% | |
| GCTAAATTTCAGCATTCATT+CGG | + | chr5_4:11350355-11350374 | None:intergenic | 30.0% | |
| TTATTTGTCAGTTAGTCATG+AGG | + | chr5_4:11350437-11350456 | None:intergenic | 30.0% | |
| TGAATGCTTTCATATGTCTT+TGG | - | chr5_4:11350458-11350477 | Msa0837360:CDS | 30.0% | |
| AGGGATGATTCTATCTATAA+TGG | - | chr5_4:11350517-11350536 | Msa0837360:intron | 30.0% | |
| ! | AACTTTGATGACAGATTTAG+TGG | + | chr5_4:11350584-11350603 | None:intergenic | 30.0% |
| ATTCCAAGTAATTGTCTTAC+AGG | - | chr5_4:11350609-11350628 | Msa0837360:intron | 30.0% | |
| TTCCAAGTAATTGTCTTACA+GGG | - | chr5_4:11350610-11350629 | Msa0837360:intron | 30.0% | |
| AAGTTGAGTTCTTGCAATAA+CGG | + | chr5_4:11350776-11350795 | None:intergenic | 30.0% | |
| TTATTGCAAGAACTCAACTT+TGG | - | chr5_4:11350776-11350795 | Msa0837360:intron | 30.0% | |
| AGTAAGTTAAAAACCCAAGT+TGG | + | chr5_4:11350880-11350899 | None:intergenic | 30.0% | |
| TTTGTCATCCGATTCAATAA+TGG | + | chr5_4:11351071-11351090 | None:intergenic | 30.0% | |
| !!! | CGGTCCGATTTTTAAAATAT+TGG | - | chr5_4:11351193-11351212 | Msa0837360:CDS | 30.0% |
| ATTACACCATTTCTACTACT+TGG | + | chr5_4:11351221-11351240 | None:intergenic | 30.0% | |
| AATAGCAAAAAGACTTAGGA+GGG | + | chr5_4:11351379-11351398 | None:intergenic | 30.0% | |
| ATCCAATAGCAAAAAGACTT+AGG | + | chr5_4:11351383-11351402 | None:intergenic | 30.0% | |
| ACACAAATCTATCCATATTC+AGG | - | chr5_4:11351447-11351466 | Msa0837360:CDS | 30.0% | |
| ! | AGAAAACTAGTTACTGATTG+AGG | + | chr5_4:11351543-11351562 | None:intergenic | 30.0% |
| ! | AAAAAAGAGTGTGATCGAAA+AGG | + | chr5_4:11351568-11351587 | None:intergenic | 30.0% |
| !!! | TTCGATCACACTCTTTTTTA+TGG | - | chr5_4:11351569-11351588 | Msa0837360:CDS | 30.0% |
| !!! | TCGATCACACTCTTTTTTAT+GGG | - | chr5_4:11351570-11351589 | Msa0837360:CDS | 30.0% |
| ATTCTTGCAGAGAAAATGTT+TGG | - | chr5_4:11351735-11351754 | Msa0837360:intron | 30.0% | |
| AAATCTGTTGATCCTATCAA+AGG | - | chr5_4:11351768-11351787 | Msa0837360:intron | 30.0% | |
| CTAAATGGAGTTCAAATCTT+CGG | - | chr5_4:11352021-11352040 | Msa0837360:intron | 30.0% | |
| AGTAAACATGAAACATTTGC+AGG | - | chr5_4:11352045-11352064 | Msa0837360:intron | 30.0% | |
| GTAAACATGAAACATTTGCA+GGG | - | chr5_4:11352046-11352065 | Msa0837360:intron | 30.0% | |
| ACAATTGCTTATACTTGAGA+TGG | - | chr5_4:11352140-11352159 | Msa0837360:intron | 30.0% | |
| AGTGTCAATCTAAAAAGTAG+AGG | + | chr5_4:11352263-11352282 | None:intergenic | 30.0% | |
| CTTAAATGCAAAAATAAGGG+AGG | + | chr5_4:11352288-11352307 | None:intergenic | 30.0% | |
| ! | GGAAAACGATGATTTGGATT+TGG | + | chr5_4:11348593-11348612 | None:intergenic | 35.0% |
| TTCACTCATTCTTATCAACC+TGG | - | chr5_4:11349437-11349456 | Msa0837360:CDS | 35.0% | |
| ! | TGCTGGAAGAAGATTTTCAT+CGG | + | chr5_4:11349481-11349500 | None:intergenic | 35.0% |
| TAGGTTACCTCACATTCATA+AGG | - | chr5_4:11349547-11349566 | Msa0837360:CDS | 35.0% | |
| CAAAGTTCCTTATGAATGTG+AGG | + | chr5_4:11349557-11349576 | None:intergenic | 35.0% | |
| ATAACAAGTATACCAGCTAG+TGG | + | chr5_4:11349597-11349616 | None:intergenic | 35.0% | |
| ! | TAGACCAACAATACTTGCTA+TGG | - | chr5_4:11349626-11349645 | Msa0837360:CDS | 35.0% |
| !! | AGACCAACAATACTTGCTAT+GGG | - | chr5_4:11349627-11349646 | Msa0837360:CDS | 35.0% |
| ! | ATTTTAAGCAGGTTGCGTTT+TGG | - | chr5_4:11349697-11349716 | Msa0837360:intron | 35.0% |
| ! | TGGAGAGCTATAAATGGATT+TGG | - | chr5_4:11349717-11349736 | Msa0837360:intron | 35.0% |
| ATTGCTGATAGTTATAGGGA+AGG | - | chr5_4:11349774-11349793 | Msa0837360:intron | 35.0% | |
| !!! | AGTTTTATTGGTACTGTAGG+CGG | - | chr5_4:11349825-11349844 | Msa0837360:intron | 35.0% |
| CAAACTTGCCATCAAAACAA+AGG | + | chr5_4:11349922-11349941 | None:intergenic | 35.0% | |
| GCAAGTTTGAGTGCATTTAT+TGG | - | chr5_4:11349933-11349952 | Msa0837360:intron | 35.0% | |
| CATCCACGTATAGTAAAACA+AGG | + | chr5_4:11349962-11349981 | None:intergenic | 35.0% | |
| TTCTCACTAGCATCTTGAAT+GGG | + | chr5_4:11350005-11350024 | None:intergenic | 35.0% | |
| ATTCTCACTAGCATCTTGAA+TGG | + | chr5_4:11350006-11350025 | None:intergenic | 35.0% | |
| GAATGTTGTTCCTTACCTTT+CGG | + | chr5_4:11350030-11350049 | None:intergenic | 35.0% | |
| AGCTCAATACCGTTTGATAA+AGG | - | chr5_4:11350129-11350148 | Msa0837360:intron | 35.0% | |
| GAATTAAACTACATGGAACC+GGG | - | chr5_4:11350198-11350217 | Msa0837360:intron | 35.0% | |
| TTTCCCTAAATTTCTGATCC+CGG | + | chr5_4:11350219-11350238 | None:intergenic | 35.0% | |
| !! | GAAGGCATTTATTTACTTGG+AGG | + | chr5_4:11350393-11350412 | None:intergenic | 35.0% |
| ! | ATTGTCTTACAGGGCATTAT+TGG | - | chr5_4:11350619-11350638 | Msa0837360:intron | 35.0% |
| ! | TTGTCTTACAGGGCATTATT+GGG | - | chr5_4:11350620-11350639 | Msa0837360:intron | 35.0% |
| CAAATCTCATGTGGTATCTT+TGG | + | chr5_4:11350822-11350841 | None:intergenic | 35.0% | |
| TTGTTGGAGTGAAAAGTAGT+TGG | + | chr5_4:11350851-11350870 | None:intergenic | 35.0% | |
| !! | TTAGTTTTTAACGCACTGCT+TGG | + | chr5_4:11350998-11351017 | None:intergenic | 35.0% |
| CAGTGCGTTAAAAACTAAAC+TGG | - | chr5_4:11351000-11351019 | Msa0837360:CDS | 35.0% | |
| TTGGAACCAAGTAGTAGAAA+TGG | - | chr5_4:11351212-11351231 | Msa0837360:CDS | 35.0% | |
| ATTCATTGTGTCAAGCAAGT+AGG | + | chr5_4:11351317-11351336 | None:intergenic | 35.0% | |
| CAATAGCAAAAAGACTTAGG+AGG | + | chr5_4:11351380-11351399 | None:intergenic | 35.0% | |
| !! | CTCCTAAGTCTTTTTGCTAT+TGG | - | chr5_4:11351378-11351397 | Msa0837360:CDS | 35.0% |
| !!! | TTTTGCTATTGGATGTGCAA+TGG | - | chr5_4:11351389-11351408 | Msa0837360:CDS | 35.0% |
| !! | TTTGCTATTGGATGTGCAAT+GGG | - | chr5_4:11351390-11351409 | Msa0837360:CDS | 35.0% |
| CTAAGAAGAAACCATGAGAA+TGG | + | chr5_4:11351513-11351532 | None:intergenic | 35.0% | |
| TTATGGGACTAACTATAAGC+TGG | - | chr5_4:11351586-11351605 | Msa0837360:CDS | 35.0% | |
| AACTATAAGCTGGAATGGTA+CGG | - | chr5_4:11351596-11351615 | Msa0837360:intron | 35.0% | |
| ! | GCATTTGATAGAGCTTTTGA+AGG | - | chr5_4:11351678-11351697 | Msa0837360:intron | 35.0% |
| AAAGGGTCTTCTTTCAATGA+TGG | - | chr5_4:11351818-11351837 | Msa0837360:intron | 35.0% | |
| TCAATGATGGCAATTCCATT+TGG | - | chr5_4:11351831-11351850 | Msa0837360:intron | 35.0% | |
| ! | TTTGCATTCTAGCATTTTCG+CGG | + | chr5_4:11351905-11351924 | None:intergenic | 35.0% |
| ACAAGCAGACAGAGTTAAAA+GGG | + | chr5_4:11351991-11352010 | None:intergenic | 35.0% | |
| CGAAGATTTGAACTCCATTT+AGG | + | chr5_4:11352023-11352042 | None:intergenic | 35.0% | |
| TTAAATATGTCCGATCCGTT+TGG | + | chr5_4:11352175-11352194 | None:intergenic | 35.0% | |
| GTTTAAATAGACCTTAGGAG+AGG | + | chr5_4:11352230-11352249 | None:intergenic | 35.0% | |
| GGAAGTGGAAAACGATGATT+TGG | + | chr5_4:11348599-11348618 | None:intergenic | 40.0% | |
| GAGTACTCACTTCATCTTCA+TGG | + | chr5_4:11348635-11348654 | None:intergenic | 40.0% | |
| CTAAACGCTCACTTGTATGT+TGG | + | chr5_4:11348879-11348898 | None:intergenic | 40.0% | |
| TACCGTCATTTCGTCAAACT+CGG | + | chr5_4:11348909-11348928 | None:intergenic | 40.0% | |
| TTCTCCAAGCATCAGTTACA+CGG | - | chr5_4:11349081-11349100 | Msa0837360:CDS | 40.0% | |
| TATCAACCTGGCTGCTATAA+TGG | - | chr5_4:11349449-11349468 | Msa0837360:CDS | 40.0% | |
| CTAACTTCTTTGTAGACTGC+TGG | + | chr5_4:11349498-11349517 | None:intergenic | 40.0% | |
| ! | GTTAGTGAAGCATTCAATGC+AGG | - | chr5_4:11349513-11349532 | Msa0837360:CDS | 40.0% |
| TGAGGTAACCTAAATCAGAC+GGG | + | chr5_4:11349539-11349558 | None:intergenic | 40.0% | |
| GTGAGGTAACCTAAATCAGA+CGG | + | chr5_4:11349540-11349559 | None:intergenic | 40.0% | |
| ! | GTTCCCATAGCAAGTATTGT+TGG | + | chr5_4:11349633-11349652 | None:intergenic | 40.0% |
| !!! | GCGTTTTGGAGAGCTATAAA+TGG | - | chr5_4:11349711-11349730 | Msa0837360:intron | 40.0% |
| AGTTATAGGGAAGGAGTTAG+AGG | - | chr5_4:11349783-11349802 | Msa0837360:intron | 40.0% | |
| !!! | CAGAAGTTTTGGGGAATAGA+TGG | - | chr5_4:11349885-11349904 | Msa0837360:intron | 40.0% |
| !!! | AGTTTTGGGGAATAGATGGA+TGG | - | chr5_4:11349889-11349908 | Msa0837360:intron | 40.0% |
| !!! | GAGATGTGCCTTTGTTTTGA+TGG | - | chr5_4:11349911-11349930 | Msa0837360:intron | 40.0% |
| ATGCTAGTGAGAATTCCGAA+AGG | - | chr5_4:11350012-11350031 | Msa0837360:intron | 40.0% | |
| AGTGAGAATTCCGAAAGGTA+AGG | - | chr5_4:11350017-11350036 | Msa0837360:intron | 40.0% | |
| ! | GCTCAAATTTTGTGCTCGAT+CGG | - | chr5_4:11350151-11350170 | Msa0837360:intron | 40.0% |
| ! | AAATTTTGTGCTCGATCGGA+TGG | - | chr5_4:11350155-11350174 | Msa0837360:intron | 40.0% |
| GAACCGGGATCAGAAATTTA+GGG | - | chr5_4:11350213-11350232 | Msa0837360:intron | 40.0% | |
| TGTAGTCAAATAGTGGCTGT+AGG | - | chr5_4:11350248-11350267 | Msa0837360:intron | 40.0% | |
| ATGCTAGTGTGACATCAACT+TGG | - | chr5_4:11350542-11350561 | Msa0837360:intron | 40.0% | |
| !! | ATCAACTTGGAGGTACTCTT+GGG | - | chr5_4:11350555-11350574 | Msa0837360:intron | 40.0% |
| TGCCCTGTAAGACAATTACT+TGG | + | chr5_4:11350615-11350634 | None:intergenic | 40.0% | |
| ACAATGTGGTTCGAGCTAAT+TGG | - | chr5_4:11350673-11350692 | Msa0837360:intron | 40.0% | |
| GTATCTTTGGACGACAAGAA+AGG | + | chr5_4:11350809-11350828 | None:intergenic | 40.0% | |
| TCCAACAATAGCATCCAACT+TGG | - | chr5_4:11350863-11350882 | Msa0837360:intron | 40.0% | |
| CCAACAATAGCATCCAACTT+GGG | - | chr5_4:11350864-11350883 | Msa0837360:intron | 40.0% | |
| CGGGTCAACCATTATTGAAT+CGG | - | chr5_4:11351060-11351079 | Msa0837360:CDS | 40.0% | |
| GTGTCAAGCAAGTAGGTAAA+AGG | + | chr5_4:11351310-11351329 | None:intergenic | 40.0% | |
| ! | AATGAATTTGCTCACCATGC+AGG | - | chr5_4:11351330-11351349 | Msa0837360:CDS | 40.0% |
| CACATGATTCGACCTGAATA+TGG | + | chr5_4:11351462-11351481 | None:intergenic | 40.0% | |
| GCGCAATTTAGTGCCTTTAT+GGG | - | chr5_4:11351483-11351502 | Msa0837360:CDS | 40.0% | |
| TGAGAATGGAATGCCCATAA+AGG | + | chr5_4:11351499-11351518 | None:intergenic | 40.0% | |
| TTATGGGCATTCCATTCTCA+TGG | - | chr5_4:11351499-11351518 | Msa0837360:CDS | 40.0% | |
| GGACTAACTATAAGCTGGAA+TGG | - | chr5_4:11351591-11351610 | Msa0837360:intron | 40.0% | |
| !! | AAATGCACCGATGTTTTCTG+AGG | - | chr5_4:11351623-11351642 | Msa0837360:intron | 40.0% |
| TCATTGTCCTGTGTTTGACT+GGG | + | chr5_4:11351653-11351672 | None:intergenic | 40.0% | |
| ATCATTGTCCTGTGTTTGAC+TGG | + | chr5_4:11351654-11351673 | None:intergenic | 40.0% | |
| TCAGCTGAAGATCCTTTGAT+AGG | + | chr5_4:11351783-11351802 | None:intergenic | 40.0% | |
| TATCAAAGGATCTTCAGCTG+AGG | - | chr5_4:11351782-11351801 | Msa0837360:intron | 40.0% | |
| TGAAAGAAGACCCTTTGACA+AGG | + | chr5_4:11351814-11351833 | None:intergenic | 40.0% | |
| CACAAGCAACACAATCCAAA+TGG | + | chr5_4:11351849-11351868 | None:intergenic | 40.0% | |
| AATGCAAACCCTGAAAGAAG+AGG | - | chr5_4:11351917-11351936 | Msa0837360:intron | 40.0% | |
| CATCATCTCCTCTTCTTTCA+GGG | + | chr5_4:11351928-11351947 | None:intergenic | 40.0% | |
| ACATCATCTCCTCTTCTTTC+AGG | + | chr5_4:11351929-11351948 | None:intergenic | 40.0% | |
| ! | AGAAGAGTAGTTTGCGTGAA+CGG | - | chr5_4:11351963-11351982 | Msa0837360:intron | 40.0% |
| CACAAGCAGACAGAGTTAAA+AGG | + | chr5_4:11351992-11352011 | None:intergenic | 40.0% | |
| GAGTATATGGTTCCATCATG+AGG | - | chr5_4:11352090-11352109 | Msa0837360:intron | 40.0% | |
| AGATGGCAAATGTAGCCAAA+CGG | - | chr5_4:11352157-11352176 | Msa0837360:intron | 40.0% | |
| AATTTACACGACCTCTCCTA+AGG | - | chr5_4:11352216-11352235 | Msa0837360:intron | 40.0% | |
| CTTCATGGTTTGAGAATGCG+TGG | + | chr5_4:11348620-11348639 | None:intergenic | 45.0% | |
| TACTCCGTGTAACTGATGCT+TGG | + | chr5_4:11349088-11349107 | None:intergenic | 45.0% | |
| TTGCTATGGGAACATTCTGC+TGG | - | chr5_4:11349640-11349659 | Msa0837360:CDS | 45.0% | |
| TGCTATGGGAACATTCTGCT+GGG | - | chr5_4:11349641-11349660 | Msa0837360:CDS | 45.0% | |
| GCTAACAGCAGCTGTAGATA+AGG | + | chr5_4:11349667-11349686 | None:intergenic | 45.0% | |
| ACGCAACCTGCTTAAAATCG+TGG | + | chr5_4:11349695-11349714 | None:intergenic | 45.0% | |
| GCAATGAATGACTGCAATGC+TGG | + | chr5_4:11349759-11349778 | None:intergenic | 45.0% | |
| GGAGTTAGAGGAGTTGGATT+TGG | - | chr5_4:11349795-11349814 | Msa0837360:intron | 45.0% | |
| ATTGGTACTGTAGGCGGAAT+TGG | - | chr5_4:11349831-11349850 | Msa0837360:intron | 45.0% | |
| !! | TGGTGTTATGGCTACTGTCA+TGG | - | chr5_4:11349857-11349876 | Msa0837360:intron | 45.0% |
| !! | TCATGGCTGGTCAGAAGTTT+TGG | - | chr5_4:11349874-11349893 | Msa0837360:intron | 45.0% |
| !! | CATGGCTGGTCAGAAGTTTT+GGG | - | chr5_4:11349875-11349894 | Msa0837360:intron | 45.0% |
| !! | ATGGCTGGTCAGAAGTTTTG+GGG | - | chr5_4:11349876-11349895 | Msa0837360:intron | 45.0% |
| !! | GCTGCTGACTCAATGAATGT+AGG | + | chr5_4:11350112-11350131 | None:intergenic | 45.0% |
| GGAACCGGGATCAGAAATTT+AGG | - | chr5_4:11350212-11350231 | Msa0837360:intron | 45.0% | |
| ! | AATCAGCTTTGTGTGTCAGC+AGG | - | chr5_4:11350497-11350516 | Msa0837360:intron | 45.0% |
| ! | ATCAGCTTTGTGTGTCAGCA+GGG | - | chr5_4:11350498-11350517 | Msa0837360:intron | 45.0% |
| CTAGTGTGACATCAACTTGG+AGG | - | chr5_4:11350545-11350564 | Msa0837360:intron | 45.0% | |
| !! | CATCAACTTGGAGGTACTCT+TGG | - | chr5_4:11350554-11350573 | Msa0837360:intron | 45.0% |
| GCATTATTGGGTCACTACCA+TGG | - | chr5_4:11350632-11350651 | Msa0837360:intron | 45.0% | |
| CCACATTGTGAAGAAGACCA+TGG | + | chr5_4:11350662-11350681 | None:intergenic | 45.0% | |
| CCATGGTCTTCTTCACAATG+TGG | - | chr5_4:11350659-11350678 | Msa0837360:intron | 45.0% | |
| TGGCACTCTCAAATCTCATG+TGG | + | chr5_4:11350831-11350850 | None:intergenic | 45.0% | |
| ! | CCCAAGTTGGATGCTATTGT+TGG | + | chr5_4:11350867-11350886 | None:intergenic | 45.0% |
| ATCCAATTAGCGAGATCTCC+AGG | - | chr5_4:11351025-11351044 | Msa0837360:CDS | 45.0% | |
| AACCTGGAGATCTCGCTAAT+TGG | + | chr5_4:11351030-11351049 | None:intergenic | 45.0% | |
| TTAGCGAGATCTCCAGGTTA+TGG | - | chr5_4:11351031-11351050 | Msa0837360:CDS | 45.0% | |
| TCTCCAGGTTATGGCTCAAT+CGG | - | chr5_4:11351040-11351059 | Msa0837360:CDS | 45.0% | |
| !! | AAATCGGCTAGTTTGCTGGT+TGG | + | chr5_4:11351145-11351164 | None:intergenic | 45.0% |
| CAGTCGGTTAAGCCAGAAAT+CGG | + | chr5_4:11351161-11351180 | None:intergenic | 45.0% | |
| TGTGCAATGGGATCCTTGAT+AGG | - | chr5_4:11351402-11351421 | Msa0837360:CDS | 45.0% | |
| CAATGGGATCCTTGATAGGA+GGG | - | chr5_4:11351406-11351425 | Msa0837360:CDS | 45.0% | |
| AGCTATTGACCCTCCTATCA+AGG | + | chr5_4:11351418-11351437 | None:intergenic | 45.0% | |
| CGCGCAATTTAGTGCCTTTA+TGG | - | chr5_4:11351482-11351501 | Msa0837360:CDS | 45.0% | |
| GGGACTACCTCAGAAAACAT+CGG | + | chr5_4:11351633-11351652 | None:intergenic | 45.0% | |
| TCTGCAAGAATGCCAACCAA+AGG | + | chr5_4:11351726-11351745 | None:intergenic | 45.0% | |
| ACTCTGTCTGCTTGTGACTT+CGG | - | chr5_4:11351996-11352015 | Msa0837360:intron | 45.0% | |
| CTTGTGACTTCGGTCCTAAA+TGG | - | chr5_4:11352006-11352025 | Msa0837360:intron | 45.0% | |
| TATGGTTCCATCATGAGGTG+AGG | - | chr5_4:11352095-11352114 | Msa0837360:intron | 45.0% | |
| TTATCAGCCTCACCTCATGA+TGG | + | chr5_4:11352105-11352124 | None:intergenic | 45.0% | |
| GCAAATGTAGCCAAACGGAT+CGG | - | chr5_4:11352162-11352181 | Msa0837360:intron | 45.0% | |
| GGTTTGAGAATGCGTGGAAG+TGG | + | chr5_4:11348614-11348633 | None:intergenic | 50.0% | |
| CGCCGAGTTTGACGAAATGA+CGG | - | chr5_4:11348904-11348923 | Msa0837360:three_prime_UTR | 50.0% | |
| AATGCAGGCCCGTCTGATTT+AGG | - | chr5_4:11349528-11349547 | Msa0837360:CDS | 50.0% | |
| GGACTATCATCACCACTAGC+TGG | - | chr5_4:11349582-11349601 | Msa0837360:CDS | 50.0% | |
| ! | CGCTTGCCACGATTTTAAGC+AGG | - | chr5_4:11349686-11349705 | Msa0837360:intron | 50.0% |
| AGGGAAGGAGTTAGAGGAGT+TGG | - | chr5_4:11349789-11349808 | Msa0837360:intron | 50.0% | |
| ! | CGGAATTGGAGGTGGTGTTA+TGG | - | chr5_4:11349845-11349864 | Msa0837360:intron | 50.0% |
| GTTATGGCTACTGTCATGGC+TGG | - | chr5_4:11349861-11349880 | Msa0837360:intron | 50.0% | |
| AAGAAGACCATGGCAGTCCA+TGG | + | chr5_4:11350652-11350671 | None:intergenic | 50.0% | |
| !! | TCTTGCAATAACGGTGCTGC+TGG | + | chr5_4:11350767-11350786 | None:intergenic | 50.0% |
| CTCCAGGTTATGGCTCAATC+GGG | - | chr5_4:11351041-11351060 | Msa0837360:CDS | 50.0% | |
| !! | CCAGAAATCGGCTAGTTTGC+TGG | + | chr5_4:11351149-11351168 | None:intergenic | 50.0% |
| ! | CCAGCAAACTAGCCGATTTC+TGG | - | chr5_4:11351146-11351165 | Msa0837360:CDS | 50.0% |
| ! | TCTGGCTTAACCGACTGAAC+CGG | - | chr5_4:11351164-11351183 | Msa0837360:CDS | 50.0% |
| AAAAATCGGACCGAACCAGC+CGG | + | chr5_4:11351186-11351205 | None:intergenic | 50.0% | |
| GCAATGGGATCCTTGATAGG+AGG | - | chr5_4:11351405-11351424 | Msa0837360:CDS | 50.0% | |
| AGGTAGTCCCAGTCAAACAC+AGG | - | chr5_4:11351643-11351662 | Msa0837360:intron | 50.0% | |
| CTCTTCTGTTGCAGCACCTT+TGG | - | chr5_4:11351707-11351726 | Msa0837360:intron | 50.0% | |
| TCTGTTGCAGCACCTTTGGT+TGG | - | chr5_4:11351711-11351730 | Msa0837360:intron | 50.0% | |
| TGAGGCTCTTGCCTTGTCAA+AGG | - | chr5_4:11351800-11351819 | Msa0837360:intron | 50.0% | |
| GAGGCTCTTGCCTTGTCAAA+GGG | - | chr5_4:11351801-11351820 | Msa0837360:intron | 50.0% | |
| CACGCTCCATTATAGCAGCC+AGG | + | chr5_4:11349458-11349477 | None:intergenic | 55.0% | |
| GGTACTGTAGGCGGAATTGG+AGG | - | chr5_4:11349834-11349853 | Msa0837360:intron | 55.0% | |
| ACTGTAGGCGGAATTGGAGG+TGG | - | chr5_4:11349837-11349856 | Msa0837360:intron | 55.0% | |
| GTAGGAGATCGCTCTCTACG+AGG | + | chr5_4:11350094-11350113 | None:intergenic | 55.0% | |
| ! | GTCACTACCATGGACTGCCA+TGG | - | chr5_4:11350642-11350661 | Msa0837360:intron | 55.0% |
| GACCCGATTGAGCCATAACC+TGG | + | chr5_4:11351046-11351065 | None:intergenic | 55.0% | |
| GCTTAACCGACTGAACCGGC+TGG | - | chr5_4:11351168-11351187 | Msa0837360:CDS | 60.0% | |
| ! | ACCGACTGAACCGGCTGGTT+CGG | - | chr5_4:11351173-11351192 | Msa0837360:CDS | 60.0% |
| ! | ACCGAACCAGCCGGTTCAGT+CGG | + | chr5_4:11351177-11351196 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 11348553 | 11352461 | 11348553 | ID=Msa0837360;Name=Msa0837360 |
| chr5_4 | mRNA | 11348553 | 11352461 | 11348553 | ID=Msa0837360-mRNA-1;Parent=Msa0837360;Name=Msa0837360-mRNA-1;_AED=0.03;_eAED=0.03;_QI=81|1|1|1|1|1|4|511|470 |
| chr5_4 | exon | 11348553 | 11349662 | 11348553 | ID=Msa0837360-mRNA-1:exon:4938;Parent=Msa0837360-mRNA-1 |
| chr5_4 | exon | 11350320 | 11350495 | 11350320 | ID=Msa0837360-mRNA-1:exon:4937;Parent=Msa0837360-mRNA-1 |
| chr5_4 | exon | 11350981 | 11351607 | 11350981 | ID=Msa0837360-mRNA-1:exon:4936;Parent=Msa0837360-mRNA-1 |
| chr5_4 | exon | 11352370 | 11352461 | 11352370 | ID=Msa0837360-mRNA-1:exon:4935;Parent=Msa0837360-mRNA-1 |
| chr5_4 | five_prime_UTR | 11352381 | 11352461 | 11352381 | ID=Msa0837360-mRNA-1:five_prime_utr;Parent=Msa0837360-mRNA-1 |
| chr5_4 | CDS | 11352370 | 11352380 | 11352370 | ID=Msa0837360-mRNA-1:cds;Parent=Msa0837360-mRNA-1 |
| chr5_4 | CDS | 11350981 | 11351607 | 11350981 | ID=Msa0837360-mRNA-1:cds;Parent=Msa0837360-mRNA-1 |
| chr5_4 | CDS | 11350320 | 11350495 | 11350320 | ID=Msa0837360-mRNA-1:cds;Parent=Msa0837360-mRNA-1 |
| chr5_4 | CDS | 11349064 | 11349662 | 11349064 | ID=Msa0837360-mRNA-1:cds;Parent=Msa0837360-mRNA-1 |
| chr5_4 | three_prime_UTR | 11348553 | 11349063 | 11348553 | ID=Msa0837360-mRNA-1:three_prime_utr;Parent=Msa0837360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
