Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757460 | G7KC53 | 91.519 | 507 | 30 | 5 | 1 | 506 | 1 | 495 | 0.0 | 868 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0757460 | Msa0757510 | 0.970681 | 5.474332e-132 | -8.615850e-47 |
| Msa0757460 | Msa0757530 | 0.879721 | 9.891214e-70 | -8.615850e-47 |
| Msa0757460 | Msa0798820 | 0.970889 | 2.625310e-132 | -8.615850e-47 |
| Msa0757460 | Msa0837360 | 0.897596 | 1.206089e-76 | -8.615850e-47 |
| Msa0757460 | Msa1459930 | 0.800987 | 1.113603e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757460 | MtrunA17_Chr5g0403601 | 91.519 | 507 | 30 | 5 | 1 | 506 | 1 | 495 | 0.0 | 868 |
| Msa0757460 | MtrunA17_Chr8g0382381 | 42.094 | 468 | 250 | 3 | 44 | 505 | 6 | 458 | 3.86e-119 | 360 |
| Msa0757460 | MtrunA17_Chr8g0382331 | 41.880 | 468 | 249 | 5 | 44 | 505 | 5 | 455 | 4.96e-117 | 354 |
| Msa0757460 | MtrunA17_Chr5g0425781 | 40.466 | 472 | 254 | 5 | 44 | 505 | 5 | 459 | 3.56e-114 | 347 |
| Msa0757460 | MtrunA17_Chr8g0382321 | 41.667 | 468 | 254 | 3 | 44 | 505 | 6 | 460 | 1.85e-106 | 326 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757460 | AT4G36790.1 | 67.061 | 507 | 148 | 5 | 1 | 506 | 1 | 489 | 0.0 | 658 |
| Msa0757460 | AT2G18590.1 | 55.338 | 459 | 196 | 4 | 51 | 505 | 19 | 472 | 5.98e-172 | 493 |
| Msa0757460 | AT5G10190.1 | 40.899 | 467 | 255 | 3 | 44 | 505 | 5 | 455 | 1.18e-116 | 353 |
| Msa0757460 | AT1G78130.1 | 38.936 | 470 | 263 | 4 | 44 | 505 | 5 | 458 | 9.03e-108 | 330 |
| Msa0757460 | AT5G10190.2 | 40.449 | 356 | 196 | 2 | 44 | 399 | 5 | 344 | 8.05e-82 | 258 |
| Msa0757460 | AT5G10190.3 | 37.719 | 342 | 192 | 3 | 169 | 505 | 1 | 326 | 6.94e-73 | 235 |
Find 141 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAATAAGTTCTAAGTTTA+TGG | 0.098401 | 5_2:+12343856 | None:intergenic |
| CGCGCAATTTAGTGCCTTTA+TGG | 0.152888 | 5_2:-12344753 | Msa0757460:CDS |
| ACATCATCTCCTCTTCTTTC+AGG | 0.153857 | 5_2:+12344309 | None:intergenic |
| TCATGGCTGGTCAGAAGTTT+TGG | 0.226566 | 5_2:-12346360 | Msa0757460:CDS |
| CGAAGATTTGAACTCCATTT+AGG | 0.228196 | 5_2:+12344215 | None:intergenic |
| AATGCAGGCCCGTCTGATTT+AGG | 0.243271 | 5_2:-12346706 | Msa0757460:CDS |
| GGAAAACGATGATTTGGATT+TGG | 0.247729 | 5_2:+12347629 | None:intergenic |
| ATTCCAAGTAATTGTCTTAC+AGG | 0.251672 | 5_2:-12345626 | Msa0757460:CDS |
| GCAAGTTTGAGTGCATTTAT+TGG | 0.252034 | 5_2:-12346301 | Msa0757460:CDS |
| CATTCATTGCTGATAGTTAT+AGG | 0.256064 | 5_2:-12346465 | Msa0757460:CDS |
| CACATGATTCGACCTGAATA+TGG | 0.266385 | 5_2:+12344776 | None:intergenic |
| CACAAGCAGACAGAGTTAAA+AGG | 0.272801 | 5_2:+12344246 | None:intergenic |
| TATCAACCTGGCTGCTATAA+TGG | 0.279651 | 5_2:-12346785 | Msa0757460:CDS |
| GGAGTTAGAGGAGTTGGATT+TGG | 0.291569 | 5_2:-12346439 | Msa0757460:CDS |
| CTCATCTGTTGCAGCACCTT+TGG | 0.301163 | 5_2:-12344528 | Msa0757460:CDS |
| GAAAACGATGATTTGGATTT+GGG | 0.308169 | 5_2:+12347630 | None:intergenic |
| AGGGAAGGAGTTAGAGGAGT+TGG | 0.308211 | 5_2:-12346445 | Msa0757460:CDS |
| ATTGTCTTACAGGGCATTAT+TGG | 0.308907 | 5_2:-12345616 | Msa0757460:CDS |
| CATCATCTCCTCTTCTTTCA+GGG | 0.312070 | 5_2:+12344310 | None:intergenic |
| TTTGTGAATTTCTCTTGCTT+TGG | 0.320507 | 5_2:-12347724 | Msa0757460:five_prime_UTR |
| ACAATGTGGTTCGAACTAAT+TGG | 0.325301 | 5_2:-12345562 | Msa0757460:intron |
| TGGAGAGCTATAAATGGATT+TGG | 0.336581 | 5_2:-12346517 | Msa0757460:CDS |
| GCAATAAGTTCTAAGTTTAT+GGG | 0.348049 | 5_2:+12343857 | None:intergenic |
| GGAAGTGGAAAACGATGATT+TGG | 0.348923 | 5_2:+12347623 | None:intergenic |
| ATTGGTACTGTAGGCGGAAT+TGG | 0.353907 | 5_2:-12346403 | Msa0757460:CDS |
| AGTTATAGGGAAGGAGTTAG+AGG | 0.355105 | 5_2:-12346451 | Msa0757460:CDS |
| ATCCGCGAAGGACGCTGATT+TGG | 0.357441 | 5_2:-12347752 | Msa0757460:five_prime_UTR |
| ACACAAATCTATCCATATTC+AGG | 0.362159 | 5_2:-12344788 | Msa0757460:CDS |
| ATTCATTGCTGATAGTTATA+GGG | 0.365814 | 5_2:-12346464 | Msa0757460:CDS |
| GAGTACTCACTTCATCTTCA+TGG | 0.375397 | 5_2:+12347587 | None:intergenic |
| AGCTATAAATGGATTTGGTT+TGG | 0.379471 | 5_2:-12346512 | Msa0757460:CDS |
| AGGGATGATTCTATCTATAA+TGG | 0.380942 | 5_2:-12345718 | Msa0757460:CDS |
| GCGCAATTTAGTGCCTTTAT+GGG | 0.381756 | 5_2:-12344752 | Msa0757460:CDS |
| ATTCTTGCAGAGAAAATGTT+TGG | 0.382692 | 5_2:-12344500 | Msa0757460:CDS |
| TTGTCTTACAGGGCATTATT+GGG | 0.383613 | 5_2:-12345615 | Msa0757460:CDS |
| TCGATTGTCTTGTCTTATCA+TGG | 0.385947 | 5_2:-12347697 | Msa0757460:exon |
| ATCATTGTCCTGTGTTTGAT+TGG | 0.387174 | 5_2:+12344584 | None:intergenic |
| CATCAACTTGGAGGTACTCT+TGG | 0.401100 | 5_2:-12345681 | Msa0757460:CDS |
| TTAATACCAAACATTTCAAA+AGG | 0.402906 | 5_2:-12344044 | Msa0757460:three_prime_UTR |
| CTTGTGACTTCGGTCCTAAA+TGG | 0.405691 | 5_2:-12344229 | Msa0757460:three_prime_UTR |
| AACTTTGATGACAGATTTAG+TGG | 0.406804 | 5_2:+12345654 | None:intergenic |
| AGTAAACATGAAACATTTGC+AGG | 0.414201 | 5_2:-12344190 | Msa0757460:three_prime_UTR |
| TGAGAATGGAATGCCCATAA+AGG | 0.423692 | 5_2:+12344739 | None:intergenic |
| TCAATGATGGCAATTCCATT+TGG | 0.426554 | 5_2:-12344404 | Msa0757460:CDS |
| TTTGCTATTGGATGTGCAAT+GGG | 0.426804 | 5_2:-12344845 | Msa0757460:CDS |
| ATGATGTTTAAATAGACCTT+AGG | 0.429607 | 5_2:+12344003 | None:intergenic |
| CGGAATTGGAGGTGGTGTTA+TGG | 0.435818 | 5_2:-12346389 | Msa0757460:CDS |
| CTAACTTCTTTGTAGACTGC+TGG | 0.445710 | 5_2:+12346739 | None:intergenic |
| TAGGTTACCTCACATTCATA+AGG | 0.446153 | 5_2:-12346687 | Msa0757460:CDS |
| TGAGGCTCTTGCCTTGTCAA+AGG | 0.450694 | 5_2:-12344435 | Msa0757460:CDS |
| TCAGCTGAAGATCCTTTGAT+AGG | 0.451456 | 5_2:+12344455 | None:intergenic |
| TTCATAAGGAACTTTGTTCA+AGG | 0.451557 | 5_2:-12346673 | Msa0757460:CDS |
| ACAAGCAGACAGAGTTAAAA+GGG | 0.455125 | 5_2:+12344247 | None:intergenic |
| ATTGTATTATGTATTTAAGA+AGG | 0.457056 | 5_2:-12344357 | Msa0757460:CDS |
| TTAAATATGTCCGATCCGTT+TGG | 0.457641 | 5_2:+12344063 | None:intergenic |
| TTGCTATGGGAACATTCTGC+TGG | 0.459474 | 5_2:-12346594 | Msa0757460:CDS |
| CGCGAAGGACGCTGATTTGG+TGG | 0.461134 | 5_2:-12347749 | Msa0757460:five_prime_UTR |
| TTATGGGCATTCCATTCTCA+TGG | 0.462787 | 5_2:-12344736 | Msa0757460:CDS |
| CACAAGCAACACAATCCAAA+TGG | 0.463522 | 5_2:+12344389 | None:intergenic |
| GTTCCCATAGCAAGTATTGT+TGG | 0.463630 | 5_2:+12346604 | None:intergenic |
| GAGGCTCTTGCCTTGTCAAA+GGG | 0.464791 | 5_2:-12344434 | Msa0757460:CDS |
| AAAGGGTCTTCTTTCAATGA+TGG | 0.467546 | 5_2:-12344417 | Msa0757460:CDS |
| CGATTGTCTTGTCTTATCAT+GGG | 0.468458 | 5_2:-12347696 | Msa0757460:exon |
| TCATTGTCCTGTGTTTGATT+GGG | 0.470929 | 5_2:+12344585 | None:intergenic |
| ACTCTGTCTGCTTGTGACTT+CGG | 0.472536 | 5_2:-12344239 | Msa0757460:three_prime_UTR |
| TCTGTTGCAGCACCTTTGGT+TGG | 0.476156 | 5_2:-12344524 | Msa0757460:CDS |
| TTATGGGACTAACTATAAGC+TGG | 0.478256 | 5_2:-12344649 | Msa0757460:CDS |
| ATTAACATTGTTAAAGTACA+AGG | 0.479093 | 5_2:+12343914 | None:intergenic |
| CTAAATGGAGTTCAAATCTT+CGG | 0.480480 | 5_2:-12344214 | Msa0757460:three_prime_UTR |
| AATCAGCTTTGTGTGTCAGC+AGG | 0.482027 | 5_2:-12345738 | Msa0757460:intron |
| CACCAAATCAGCGTCCTTCG+CGG | 0.486892 | 5_2:+12347750 | None:intergenic |
| GCAATGAATGACTGCAATGC+TGG | 0.486956 | 5_2:+12346478 | None:intergenic |
| CTAAGAAGAAACCATGAGAA+TGG | 0.487296 | 5_2:+12344725 | None:intergenic |
| TAGACCAACAATACTTGCTA+TGG | 0.488171 | 5_2:-12346608 | Msa0757460:CDS |
| TAATACCAAACATTTCAAAA+GGG | 0.488362 | 5_2:-12344043 | Msa0757460:three_prime_UTR |
| TTCTCACTAGCATCTTGAAT+GGG | 0.489483 | 5_2:+12346233 | None:intergenic |
| CAATTCAATAAAGCAACTAA+TGG | 0.494567 | 5_2:+12343815 | None:intergenic |
| TGCTATGGGAACATTCTGCT+GGG | 0.500869 | 5_2:-12346593 | Msa0757460:CDS |
| TGTGCAATGGGATCCTTGAT+AGG | 0.503894 | 5_2:-12344833 | Msa0757460:CDS |
| GCTAACAGCAGCTGTAGATA+AGG | 0.506088 | 5_2:+12346570 | None:intergenic |
| TTCACTCATTCTTATCAACC+TGG | 0.507417 | 5_2:-12346797 | Msa0757460:CDS |
| AGCTATTGACCCTCCTATCA+AGG | 0.512037 | 5_2:+12344820 | None:intergenic |
| TGCCCTGTAAGACAATTACT+TGG | 0.516786 | 5_2:+12345623 | None:intergenic |
| ATCAACTTGGAGGTACTCTT+GGG | 0.517727 | 5_2:-12345680 | Msa0757460:CDS |
| GAATTGTCTTATATTTGCTT+AGG | 0.519916 | 5_2:-12343798 | Msa0757460:three_prime_UTR |
| AGAAAACTAGTTACTGATTG+AGG | 0.527052 | 5_2:+12344695 | None:intergenic |
| ACAATTGCTTATACTTGAGA+TGG | 0.532079 | 5_2:-12344095 | Msa0757460:three_prime_UTR |
| ATTCTCACTAGCATCTTGAA+TGG | 0.533216 | 5_2:+12346232 | None:intergenic |
| GGACTAACTATAAGCTGGAA+TGG | 0.534983 | 5_2:-12344644 | Msa0757460:CDS |
| CACGCTCCATTATAGCAGCC+AGG | 0.535980 | 5_2:+12346779 | None:intergenic |
| AACTATAAGCTGGAATGGTA+CGG | 0.538107 | 5_2:-12344639 | Msa0757460:CDS |
| AGAAGAGTAGTTTGCGTGAA+CGG | 0.539793 | 5_2:-12344272 | Msa0757460:three_prime_UTR |
| GTTAGTGAAGCATTCAATGC+AGG | 0.545523 | 5_2:-12346721 | Msa0757460:CDS |
| ATGCTAGTGTGACATCAACT+TGG | 0.545853 | 5_2:-12345693 | Msa0757460:CDS |
| GGTTTGAGAATGCGTGGAAG+TGG | 0.548461 | 5_2:+12347608 | None:intergenic |
| GGACTATCATCACCACTAGC+TGG | 0.550906 | 5_2:-12346652 | Msa0757460:CDS |
| ACTGTAGGCGGAATTGGAGG+TGG | 0.551168 | 5_2:-12346397 | Msa0757460:CDS |
| AATGCAAACCCTGAAAGAAG+AGG | 0.551409 | 5_2:-12344318 | Msa0757460:CDS |
| AAATCTGTTGATCCTATCAA+AGG | 0.553054 | 5_2:-12344467 | Msa0757460:CDS |
| TCTTCAAGTAAAAGAAAATG+AGG | 0.553461 | 5_2:+12344166 | None:intergenic |
| GTTATGGCTACTGTCATGGC+TGG | 0.556439 | 5_2:-12346373 | Msa0757460:CDS |
| TGGTGTTATGGCTACTGTCA+TGG | 0.560251 | 5_2:-12346377 | Msa0757460:CDS |
| AATTTACACGACCTCTCCTA+AGG | 0.568662 | 5_2:-12344019 | Msa0757460:three_prime_UTR |
| ATCAGCTTTGTGTGTCAGCA+GGG | 0.575696 | 5_2:-12345737 | Msa0757460:intron |
| CTTCATGGTTTGAGAATGCG+TGG | 0.577954 | 5_2:+12347602 | None:intergenic |
| GGTACTGTAGGCGGAATTGG+AGG | 0.579698 | 5_2:-12346400 | Msa0757460:CDS |
| CTAGTGTGACATCAACTTGG+AGG | 0.579784 | 5_2:-12345690 | Msa0757460:CDS |
| AGATGGCAAATGTAGCCAAA+CGG | 0.580720 | 5_2:-12344078 | Msa0757460:three_prime_UTR |
| AAGAAGACCATGGCAGTCCA+TGG | 0.581215 | 5_2:+12345586 | None:intergenic |
| GAATCCTTGTTTACTATACG+TGG | 0.583127 | 5_2:-12346279 | Msa0757460:CDS |
| TTATCAGCCTCACCTCATGA+TGG | 0.583162 | 5_2:+12344133 | None:intergenic |
| CAATGGGATCCTTGATAGGA+GGG | 0.586366 | 5_2:-12344829 | Msa0757460:CDS |
| CCATGGTCTTCTTCACAATG+TGG | 0.588693 | 5_2:-12345576 | Msa0757460:CDS |
| CAAAGTTCCTTATGAATGTG+AGG | 0.588860 | 5_2:+12346680 | None:intergenic |
| GCAATGGGATCCTTGATAGG+AGG | 0.591989 | 5_2:-12344830 | Msa0757460:CDS |
| AGACCAACAATACTTGCTAT+GGG | 0.595257 | 5_2:-12346607 | Msa0757460:CDS |
| GTCACTACCATGGACTGCCA+TGG | 0.600615 | 5_2:-12345593 | Msa0757460:CDS |
| GTGAGGTAACCTAAATCAGA+CGG | 0.604891 | 5_2:+12346697 | None:intergenic |
| GCATTATTGGGTCACTACCA+TGG | 0.609004 | 5_2:-12345603 | Msa0757460:CDS |
| GAGTATATGGTTCCATCATG+AGG | 0.610169 | 5_2:-12344145 | Msa0757460:three_prime_UTR |
| ATTGCTGATAGTTATAGGGA+AGG | 0.611447 | 5_2:-12346460 | Msa0757460:CDS |
| TTCCAAGTAATTGTCTTACA+GGG | 0.612324 | 5_2:-12345625 | Msa0757460:CDS |
| GCAAATGTAGCCAAACGGAT+CGG | 0.620635 | 5_2:-12344073 | Msa0757460:three_prime_UTR |
| TTAACATTGTTAAAGTACAA+GGG | 0.623156 | 5_2:+12343915 | None:intergenic |
| TGAGGTAACCTAAATCAGAC+GGG | 0.623759 | 5_2:+12346698 | None:intergenic |
| TTCTTAAATACATAATACAA+TGG | 0.630614 | 5_2:+12344359 | None:intergenic |
| CAAACTTGCCATCAAAACAA+AGG | 0.638977 | 5_2:+12346315 | None:intergenic |
| TCATCCACGTATAGTAAACA+AGG | 0.639501 | 5_2:+12346275 | None:intergenic |
| TGAAAGAAGACCCTTTGACA+AGG | 0.642266 | 5_2:+12344424 | None:intergenic |
| ACGCAACCTGCTTAAAATCG+TGG | 0.645780 | 5_2:+12346542 | None:intergenic |
| TCTGCAAGAATGCCAACCAA+AGG | 0.651073 | 5_2:+12344512 | None:intergenic |
| GTAAACATGAAACATTTGCA+GGG | 0.658169 | 5_2:-12344189 | Msa0757460:three_prime_UTR |
| TAATTGCGTGAGATCCGCGA+AGG | 0.664156 | 5_2:-12347764 | Msa0757460:five_prime_UTR |
| TATGGTTCCATCATGAGGTG+AGG | 0.665674 | 5_2:-12344140 | Msa0757460:three_prime_UTR |
| GTTTAAATAGACCTTAGGAG+AGG | 0.671149 | 5_2:+12344008 | None:intergenic |
| ATAACAAGTATACCAGCTAG+TGG | 0.681249 | 5_2:+12346640 | None:intergenic |
| TATCAAAGGATCTTCAGCTG+AGG | 0.682943 | 5_2:-12344453 | Msa0757460:CDS |
| AGGTAGTCCCAATCAAACAC+AGG | 0.688738 | 5_2:-12344592 | Msa0757460:CDS |
| GGGACTACCTCAGAAAACAT+CGG | 0.700159 | 5_2:+12344605 | None:intergenic |
| ATGCTAGTGAGAATTCCGAA+AGG | 0.706334 | 5_2:-12346223 | Msa0757460:intron |
| CCACATTGTGAAGAAGACCA+TGG | 0.717544 | 5_2:+12345576 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTTAGAATAAAATTTTAA+AGG | - | chr5_2:12344562-12344581 | Msa0757460:CDS | 10.0% |
| !!! | ACTTAGAATAAAATTTTAAA+GGG | - | chr5_2:12344563-12344582 | Msa0757460:CDS | 10.0% |
| !!! | AAATCTATTTTAAAAACCTT+TGG | + | chr5_2:12344183-12344202 | None:intergenic | 15.0% |
| !!! | TTTTTTTATGCAAAAACTAT+AGG | - | chr5_2:12344237-12344256 | Msa0757460:three_prime_UTR | 15.0% |
| !!! | TTTAGTTTTTGTTGAAATTA+CGG | - | chr5_2:12344339-12344358 | Msa0757460:CDS | 15.0% |
| !!! | ATATAATGAATTGCATTTTA+TGG | - | chr5_2:12344740-12344759 | Msa0757460:CDS | 15.0% |
| !!! | TATAATGAATTGCATTTTAT+GGG | - | chr5_2:12344741-12344760 | Msa0757460:CDS | 15.0% |
| !! | AAAATAAATCAAAAACTGAA+TGG | + | chr5_2:12345713-12345732 | None:intergenic | 15.0% |
| !! | TTCTTAAATACATAATACAA+TGG | + | chr5_2:12347262-12347281 | None:intergenic | 15.0% |
| !! | ATTGTATTATGTATTTAAGA+AGG | - | chr5_2:12347261-12347280 | Msa0757460:intron | 15.0% |
| !! | TTTAGTTAGAAGAATATTCA+TGG | - | chr5_2:12344115-12344134 | Msa0757460:three_prime_UTR | 20.0% |
| !! | TTTCAACAAAAACTAAATCT+TGG | + | chr5_2:12344336-12344355 | None:intergenic | 20.0% |
| !! | GTTAAATATATGCTTTGATT+TGG | - | chr5_2:12344585-12344604 | Msa0757460:CDS | 20.0% |
| !! | AATTGAAAGAAGTAAGTAAA+AGG | + | chr5_2:12344704-12344723 | None:intergenic | 20.0% |
| !! | TAAACAATATAACAGTTTGA+AGG | + | chr5_2:12345794-12345813 | None:intergenic | 20.0% |
| !! | GTAGATTATATAATTGTACA+AGG | - | chr5_2:12346287-12346306 | Msa0757460:CDS | 20.0% |
| !!! | GGTTCCAATATTTTAAAAAT+CGG | + | chr5_2:12346583-12346602 | None:intergenic | 20.0% |
| !!! | ACTTCTTCAAATTTTATGAA+AGG | - | chr5_2:12346634-12346653 | Msa0757460:CDS | 20.0% |
| !! | TTAATACCAAACATTTCAAA+AGG | - | chr5_2:12347574-12347593 | Msa0757460:intron | 20.0% |
| !! | TAATACCAAACATTTCAAAA+GGG | - | chr5_2:12347575-12347594 | Msa0757460:intron | 20.0% |
| !! | TCACTTAAATGCAAAAATAA+GGG | + | chr5_2:12347674-12347693 | None:intergenic | 20.0% |
| !! | TTAACATTGTTAAAGTACAA+GGG | + | chr5_2:12347706-12347725 | None:intergenic | 20.0% |
| !! | ATTAACATTGTTAAAGTACA+AGG | + | chr5_2:12347707-12347726 | None:intergenic | 20.0% |
| ! | GTTTATTATGCTAATGATCA+AGG | + | chr5_2:12344542-12344561 | None:intergenic | 25.0% |
| ! | CTTTGATATTGAGAAAAATG+AGG | - | chr5_2:12344633-12344652 | Msa0757460:CDS | 25.0% |
| ! | GAAGAAAATCATACAAAGTT+TGG | + | chr5_2:12344682-12344701 | None:intergenic | 25.0% |
| !! | AGAACAACAATACAGATTTT+TGG | - | chr5_2:12344789-12344808 | Msa0757460:CDS | 25.0% |
| ! | ATTCATTGCTGATAGTTATA+GGG | - | chr5_2:12345154-12345173 | Msa0757460:intron | 25.0% |
| !!! | TTTGGAGTAGTAAGTTTTAT+TGG | - | chr5_2:12345197-12345216 | Msa0757460:intron | 25.0% |
| ! | ACATTACTCATGTGAAATTT+AGG | - | chr5_2:12345441-12345460 | Msa0757460:intron | 25.0% |
| ! | AAATTTGAGCCTTTATCAAA+CGG | + | chr5_2:12345524-12345543 | None:intergenic | 25.0% |
| !!! | TTTGAAGGCATTTATTTACT+TGG | + | chr5_2:12345779-12345798 | None:intergenic | 25.0% |
| ! | ATGTAACAAAATACAAGAAC+AGG | - | chr5_2:12346327-12346346 | Msa0757460:CDS | 25.0% |
| ! | TATTATTATCAAAACCTGCA+TGG | + | chr5_2:12346730-12346749 | None:intergenic | 25.0% |
| ! | TCTTCAAGTAAAAGAAAATG+AGG | + | chr5_2:12347455-12347474 | None:intergenic | 25.0% |
| !!! | TCTTTTACTTGAAGAGTATA+TGG | - | chr5_2:12347460-12347479 | Msa0757460:intron | 25.0% |
| !!! | AATTTCCCTTTTGAAATGTT+TGG | + | chr5_2:12347583-12347602 | None:intergenic | 25.0% |
| ! | ATGATGTTTAAATAGACCTT+AGG | + | chr5_2:12347618-12347637 | None:intergenic | 25.0% |
| ! | GTCACTTAAATGCAAAAATA+AGG | + | chr5_2:12347675-12347694 | None:intergenic | 25.0% |
| !!! | GCAATAAGTTCTAAGTTTAT+GGG | + | chr5_2:12347764-12347783 | None:intergenic | 25.0% |
| !!! | AGCAATAAGTTCTAAGTTTA+TGG | + | chr5_2:12347765-12347784 | None:intergenic | 25.0% |
| ! | CAATTCAATAAAGCAACTAA+TGG | + | chr5_2:12347806-12347825 | None:intergenic | 25.0% |
| ! | GAATTGTCTTATATTTGCTT+AGG | - | chr5_2:12347820-12347839 | Msa0757460:five_prime_UTR | 25.0% |
| TTTGTGAATTTCTCTTGCTT+TGG | - | chr5_2:12343894-12343913 | Msa0757460:three_prime_UTR | 30.0% | |
| ! | AGATGTTGTGCTATGTTTTT+GGG | + | chr5_2:12343959-12343978 | None:intergenic | 30.0% |
| ! | TAGATGTTGTGCTATGTTTT+TGG | + | chr5_2:12343960-12343979 | None:intergenic | 30.0% |
| ! | GAAAACGATGATTTGGATTT+GGG | + | chr5_2:12343991-12344010 | None:intergenic | 30.0% |
| CAAAGAAAGAAAGAAACGTA+AGG | + | chr5_2:12344056-12344075 | None:intergenic | 30.0% | |
| ! | AGACTTAGAGAATTTTCCAA+AGG | - | chr5_2:12344164-12344183 | Msa0757460:three_prime_UTR | 30.0% |
| ACGATAGTTAGACAAAATCA+CGG | + | chr5_2:12344372-12344391 | None:intergenic | 30.0% | |
| AATTCAAACATGCACAAAAC+TGG | - | chr5_2:12344393-12344412 | Msa0757460:CDS | 30.0% | |
| ! | AAATCTGTATTGTTGTTCTG+TGG | + | chr5_2:12344788-12344807 | None:intergenic | 30.0% |
| TTCATAAGGAACTTTGTTCA+AGG | - | chr5_2:12344945-12344964 | Msa0757460:intron | 30.0% | |
| ! | AGCTATAAATGGATTTGGTT+TGG | - | chr5_2:12345106-12345125 | Msa0757460:intron | 30.0% |
| CATTCATTGCTGATAGTTAT+AGG | - | chr5_2:12345153-12345172 | Msa0757460:intron | 30.0% | |
| !!! | GTAAGTTTTATTGGTACTGT+AGG | - | chr5_2:12345206-12345225 | Msa0757460:intron | 30.0% |
| ! | ATGGGAGAAAATCTTTTTCT+TGG | + | chr5_2:12345370-12345389 | None:intergenic | 30.0% |
| ACCTAGTGAATTAAACTACA+TGG | - | chr5_2:12345574-12345593 | Msa0757460:CDS | 30.0% | |
| TCCATGTAGTTTAATTCACT+AGG | + | chr5_2:12345578-12345597 | None:intergenic | 30.0% | |
| TGAATTAAACTACATGGAAC+CGG | - | chr5_2:12345580-12345599 | Msa0757460:CDS | 30.0% | |
| GATTCTTTGTAGTCAAATAG+TGG | - | chr5_2:12345624-12345643 | Msa0757460:CDS | 30.0% | |
| AACTACTGATCAAAATCAGA+TGG | + | chr5_2:12345667-12345686 | None:intergenic | 30.0% | |
| GCTAAATTTCAGCATTCATT+CGG | + | chr5_2:12345738-12345757 | None:intergenic | 30.0% | |
| TTATTTGTCAGTTAGTCATG+AGG | + | chr5_2:12345820-12345839 | None:intergenic | 30.0% | |
| TGAATGCTTTCATATGTCTT+TGG | - | chr5_2:12345841-12345860 | Msa0757460:intron | 30.0% | |
| AGGGATGATTCTATCTATAA+TGG | - | chr5_2:12345900-12345919 | Msa0757460:intron | 30.0% | |
| ! | AACTTTGATGACAGATTTAG+TGG | + | chr5_2:12345967-12345986 | None:intergenic | 30.0% |
| ATTCCAAGTAATTGTCTTAC+AGG | - | chr5_2:12345992-12346011 | Msa0757460:intron | 30.0% | |
| TTCCAAGTAATTGTCTTACA+GGG | - | chr5_2:12345993-12346012 | Msa0757460:intron | 30.0% | |
| AAGTTGAGTTCTTGCAATAA+CGG | + | chr5_2:12346159-12346178 | None:intergenic | 30.0% | |
| TTATTGCAAGAACTCAACTT+TGG | - | chr5_2:12346159-12346178 | Msa0757460:intron | 30.0% | |
| AGTAAGTTAAAAACCCAAGT+TGG | + | chr5_2:12346263-12346282 | None:intergenic | 30.0% | |
| TTTGTCATCCGATTCAATAA+TGG | + | chr5_2:12346454-12346473 | None:intergenic | 30.0% | |
| !!! | CGGTCCGATTTTTAAAATAT+TGG | - | chr5_2:12346576-12346595 | Msa0757460:CDS | 30.0% |
| ATTACACCATTTCTACTACT+TGG | + | chr5_2:12346604-12346623 | None:intergenic | 30.0% | |
| AATAGCAAAAAGACTTAGGA+GGG | + | chr5_2:12346762-12346781 | None:intergenic | 30.0% | |
| ATCCAATAGCAAAAAGACTT+AGG | + | chr5_2:12346766-12346785 | None:intergenic | 30.0% | |
| ACACAAATCTATCCATATTC+AGG | - | chr5_2:12346830-12346849 | Msa0757460:CDS | 30.0% | |
| ! | AGAAAACTAGTTACTGATTG+AGG | + | chr5_2:12346926-12346945 | None:intergenic | 30.0% |
| ! | AAAAAAGAGTGTGATCGAAA+AGG | + | chr5_2:12346951-12346970 | None:intergenic | 30.0% |
| !!! | TTCGATCACACTCTTTTTTA+TGG | - | chr5_2:12346952-12346971 | Msa0757460:intron | 30.0% |
| !!! | TCGATCACACTCTTTTTTAT+GGG | - | chr5_2:12346953-12346972 | Msa0757460:intron | 30.0% |
| ATTCTTGCAGAGAAAATGTT+TGG | - | chr5_2:12347118-12347137 | Msa0757460:intron | 30.0% | |
| AAATCTGTTGATCCTATCAA+AGG | - | chr5_2:12347151-12347170 | Msa0757460:intron | 30.0% | |
| CTAAATGGAGTTCAAATCTT+CGG | - | chr5_2:12347404-12347423 | Msa0757460:intron | 30.0% | |
| AGTAAACATGAAACATTTGC+AGG | - | chr5_2:12347428-12347447 | Msa0757460:intron | 30.0% | |
| GTAAACATGAAACATTTGCA+GGG | - | chr5_2:12347429-12347448 | Msa0757460:intron | 30.0% | |
| ACAATTGCTTATACTTGAGA+TGG | - | chr5_2:12347523-12347542 | Msa0757460:intron | 30.0% | |
| AGTGTCAATCTAAAAAGTAG+AGG | + | chr5_2:12347646-12347665 | None:intergenic | 30.0% | |
| CTTAAATGCAAAAATAAGGG+AGG | + | chr5_2:12347671-12347690 | None:intergenic | 30.0% | |
| TCGATTGTCTTGTCTTATCA+TGG | - | chr5_2:12343921-12343940 | Msa0757460:three_prime_UTR | 35.0% | |
| CGATTGTCTTGTCTTATCAT+GGG | - | chr5_2:12343922-12343941 | Msa0757460:three_prime_UTR | 35.0% | |
| ! | GGAAAACGATGATTTGGATT+TGG | + | chr5_2:12343992-12344011 | None:intergenic | 35.0% |
| TTCACTCATTCTTATCAACC+TGG | - | chr5_2:12344821-12344840 | Msa0757460:CDS | 35.0% | |
| ! | TGCTGGAAGAAGATTTTCAT+CGG | + | chr5_2:12344865-12344884 | None:intergenic | 35.0% |
| TAGGTTACCTCACATTCATA+AGG | - | chr5_2:12344931-12344950 | Msa0757460:intron | 35.0% | |
| CAAAGTTCCTTATGAATGTG+AGG | + | chr5_2:12344941-12344960 | None:intergenic | 35.0% | |
| ATAACAAGTATACCAGCTAG+TGG | + | chr5_2:12344981-12345000 | None:intergenic | 35.0% | |
| ! | TAGACCAACAATACTTGCTA+TGG | - | chr5_2:12345010-12345029 | Msa0757460:intron | 35.0% |
| !! | AGACCAACAATACTTGCTAT+GGG | - | chr5_2:12345011-12345030 | Msa0757460:intron | 35.0% |
| ! | ATTTTAAGCAGGTTGCGTTT+TGG | - | chr5_2:12345081-12345100 | Msa0757460:intron | 35.0% |
| ! | TGGAGAGCTATAAATGGATT+TGG | - | chr5_2:12345101-12345120 | Msa0757460:intron | 35.0% |
| ATTGCTGATAGTTATAGGGA+AGG | - | chr5_2:12345158-12345177 | Msa0757460:intron | 35.0% | |
| !!! | AGTTTTATTGGTACTGTAGG+CGG | - | chr5_2:12345209-12345228 | Msa0757460:intron | 35.0% |
| CAAACTTGCCATCAAAACAA+AGG | + | chr5_2:12345306-12345325 | None:intergenic | 35.0% | |
| GCAAGTTTGAGTGCATTTAT+TGG | - | chr5_2:12345317-12345336 | Msa0757460:intron | 35.0% | |
| ! | GAATCCTTGTTTACTATACG+TGG | - | chr5_2:12345339-12345358 | Msa0757460:intron | 35.0% |
| TCATCCACGTATAGTAAACA+AGG | + | chr5_2:12345346-12345365 | None:intergenic | 35.0% | |
| TTCTCACTAGCATCTTGAAT+GGG | + | chr5_2:12345388-12345407 | None:intergenic | 35.0% | |
| ATTCTCACTAGCATCTTGAA+TGG | + | chr5_2:12345389-12345408 | None:intergenic | 35.0% | |
| GAATGTTGTTCCTTACCTTT+CGG | + | chr5_2:12345413-12345432 | None:intergenic | 35.0% | |
| AGCTCAATACCGTTTGATAA+AGG | - | chr5_2:12345512-12345531 | Msa0757460:intron | 35.0% | |
| GAATTAAACTACATGGAACC+GGG | - | chr5_2:12345581-12345600 | Msa0757460:CDS | 35.0% | |
| TTTCCCTAAATTTCTGATCC+CGG | + | chr5_2:12345602-12345621 | None:intergenic | 35.0% | |
| !! | GAAGGCATTTATTTACTTGG+AGG | + | chr5_2:12345776-12345795 | None:intergenic | 35.0% |
| ! | ATTGTCTTACAGGGCATTAT+TGG | - | chr5_2:12346002-12346021 | Msa0757460:intron | 35.0% |
| ! | TTGTCTTACAGGGCATTATT+GGG | - | chr5_2:12346003-12346022 | Msa0757460:intron | 35.0% |
| ACAATGTGGTTCGAACTAAT+TGG | - | chr5_2:12346056-12346075 | Msa0757460:intron | 35.0% | |
| CAAATCTCATGTGGTATCTT+TGG | + | chr5_2:12346205-12346224 | None:intergenic | 35.0% | |
| TTGTTGGAGTGAAAAGTAGT+TGG | + | chr5_2:12346234-12346253 | None:intergenic | 35.0% | |
| !! | TTAGTTTTTAACGCACTGCT+TGG | + | chr5_2:12346381-12346400 | None:intergenic | 35.0% |
| CAGTGCGTTAAAAACTAAAC+TGG | - | chr5_2:12346383-12346402 | Msa0757460:CDS | 35.0% | |
| TTGGAACCAAGTAGTAGAAA+TGG | - | chr5_2:12346595-12346614 | Msa0757460:CDS | 35.0% | |
| ATTCATTGTGTCAAGCAAGT+AGG | + | chr5_2:12346700-12346719 | None:intergenic | 35.0% | |
| CAATAGCAAAAAGACTTAGG+AGG | + | chr5_2:12346763-12346782 | None:intergenic | 35.0% | |
| !! | CTCCTAAGTCTTTTTGCTAT+TGG | - | chr5_2:12346761-12346780 | Msa0757460:CDS | 35.0% |
| !!! | TTTTGCTATTGGATGTGCAA+TGG | - | chr5_2:12346772-12346791 | Msa0757460:CDS | 35.0% |
| !! | TTTGCTATTGGATGTGCAAT+GGG | - | chr5_2:12346773-12346792 | Msa0757460:CDS | 35.0% |
| CTAAGAAGAAACCATGAGAA+TGG | + | chr5_2:12346896-12346915 | None:intergenic | 35.0% | |
| TTATGGGACTAACTATAAGC+TGG | - | chr5_2:12346969-12346988 | Msa0757460:intron | 35.0% | |
| AACTATAAGCTGGAATGGTA+CGG | - | chr5_2:12346979-12346998 | Msa0757460:intron | 35.0% | |
| TCATTGTCCTGTGTTTGATT+GGG | + | chr5_2:12347036-12347055 | None:intergenic | 35.0% | |
| ATCATTGTCCTGTGTTTGAT+TGG | + | chr5_2:12347037-12347056 | None:intergenic | 35.0% | |
| ! | GCATTTGATAGAGCTTTTGA+AGG | - | chr5_2:12347061-12347080 | Msa0757460:intron | 35.0% |
| AAAGGGTCTTCTTTCAATGA+TGG | - | chr5_2:12347201-12347220 | Msa0757460:intron | 35.0% | |
| TCAATGATGGCAATTCCATT+TGG | - | chr5_2:12347214-12347233 | Msa0757460:intron | 35.0% | |
| ! | TTTGCATTCTAGCATTTTCG+CGG | + | chr5_2:12347288-12347307 | None:intergenic | 35.0% |
| ACAAGCAGACAGAGTTAAAA+GGG | + | chr5_2:12347374-12347393 | None:intergenic | 35.0% | |
| CGAAGATTTGAACTCCATTT+AGG | + | chr5_2:12347406-12347425 | None:intergenic | 35.0% | |
| TTAAATATGTCCGATCCGTT+TGG | + | chr5_2:12347558-12347577 | None:intergenic | 35.0% | |
| GTTTAAATAGACCTTAGGAG+AGG | + | chr5_2:12347613-12347632 | None:intergenic | 35.0% | |
| GGAAGTGGAAAACGATGATT+TGG | + | chr5_2:12343998-12344017 | None:intergenic | 40.0% | |
| GAGTACTCACTTCATCTTCA+TGG | + | chr5_2:12344034-12344053 | None:intergenic | 40.0% | |
| CTAAACGCTCACTTGTATGT+TGG | + | chr5_2:12344263-12344282 | None:intergenic | 40.0% | |
| TACCGTCATTTCGTCAAACT+CGG | + | chr5_2:12344293-12344312 | None:intergenic | 40.0% | |
| TTCTCCAAGCATCAGTTACA+CGG | - | chr5_2:12344465-12344484 | Msa0757460:CDS | 40.0% | |
| TATCAACCTGGCTGCTATAA+TGG | - | chr5_2:12344833-12344852 | Msa0757460:CDS | 40.0% | |
| CTAACTTCTTTGTAGACTGC+TGG | + | chr5_2:12344882-12344901 | None:intergenic | 40.0% | |
| ! | GTTAGTGAAGCATTCAATGC+AGG | - | chr5_2:12344897-12344916 | Msa0757460:intron | 40.0% |
| TGAGGTAACCTAAATCAGAC+GGG | + | chr5_2:12344923-12344942 | None:intergenic | 40.0% | |
| GTGAGGTAACCTAAATCAGA+CGG | + | chr5_2:12344924-12344943 | None:intergenic | 40.0% | |
| ! | GTTCCCATAGCAAGTATTGT+TGG | + | chr5_2:12345017-12345036 | None:intergenic | 40.0% |
| !!! | GCGTTTTGGAGAGCTATAAA+TGG | - | chr5_2:12345095-12345114 | Msa0757460:intron | 40.0% |
| AGTTATAGGGAAGGAGTTAG+AGG | - | chr5_2:12345167-12345186 | Msa0757460:intron | 40.0% | |
| !!! | CAGAAGTTTTGGGGAATAGA+TGG | - | chr5_2:12345269-12345288 | Msa0757460:intron | 40.0% |
| !!! | AGTTTTGGGGAATAGATGGA+TGG | - | chr5_2:12345273-12345292 | Msa0757460:intron | 40.0% |
| !!! | GAGATGTGCCTTTGTTTTGA+TGG | - | chr5_2:12345295-12345314 | Msa0757460:intron | 40.0% |
| ATGCTAGTGAGAATTCCGAA+AGG | - | chr5_2:12345395-12345414 | Msa0757460:intron | 40.0% | |
| AGTGAGAATTCCGAAAGGTA+AGG | - | chr5_2:12345400-12345419 | Msa0757460:intron | 40.0% | |
| ! | GCTCAAATTTTGTGCTCGAT+CGG | - | chr5_2:12345534-12345553 | Msa0757460:intron | 40.0% |
| ! | AAATTTTGTGCTCGATCGGA+TGG | - | chr5_2:12345538-12345557 | Msa0757460:intron | 40.0% |
| GAACCGGGATCAGAAATTTA+GGG | - | chr5_2:12345596-12345615 | Msa0757460:CDS | 40.0% | |
| TGTAGTCAAATAGTGGCTGT+AGG | - | chr5_2:12345631-12345650 | Msa0757460:CDS | 40.0% | |
| ATGCTAGTGTGACATCAACT+TGG | - | chr5_2:12345925-12345944 | Msa0757460:intron | 40.0% | |
| !! | ATCAACTTGGAGGTACTCTT+GGG | - | chr5_2:12345938-12345957 | Msa0757460:intron | 40.0% |
| TGCCCTGTAAGACAATTACT+TGG | + | chr5_2:12345998-12346017 | None:intergenic | 40.0% | |
| GTATCTTTGGACGACAAGAA+AGG | + | chr5_2:12346192-12346211 | None:intergenic | 40.0% | |
| TCCAACAATAGCATCCAACT+TGG | - | chr5_2:12346246-12346265 | Msa0757460:CDS | 40.0% | |
| CCAACAATAGCATCCAACTT+GGG | - | chr5_2:12346247-12346266 | Msa0757460:CDS | 40.0% | |
| CGGGTCAACCATTATTGAAT+CGG | - | chr5_2:12346443-12346462 | Msa0757460:CDS | 40.0% | |
| GTGTCAAGCAAGTAGGTAAA+AGG | + | chr5_2:12346693-12346712 | None:intergenic | 40.0% | |
| ! | AATGAATTTGCTCACCATGC+AGG | - | chr5_2:12346713-12346732 | Msa0757460:CDS | 40.0% |
| CACATGATTCGACCTGAATA+TGG | + | chr5_2:12346845-12346864 | None:intergenic | 40.0% | |
| GCGCAATTTAGTGCCTTTAT+GGG | - | chr5_2:12346866-12346885 | Msa0757460:intron | 40.0% | |
| TGAGAATGGAATGCCCATAA+AGG | + | chr5_2:12346882-12346901 | None:intergenic | 40.0% | |
| TTATGGGCATTCCATTCTCA+TGG | - | chr5_2:12346882-12346901 | Msa0757460:intron | 40.0% | |
| GGACTAACTATAAGCTGGAA+TGG | - | chr5_2:12346974-12346993 | Msa0757460:intron | 40.0% | |
| !! | AAATGCACCGATGTTTTCTG+AGG | - | chr5_2:12347006-12347025 | Msa0757460:intron | 40.0% |
| TCAGCTGAAGATCCTTTGAT+AGG | + | chr5_2:12347166-12347185 | None:intergenic | 40.0% | |
| TATCAAAGGATCTTCAGCTG+AGG | - | chr5_2:12347165-12347184 | Msa0757460:intron | 40.0% | |
| TGAAAGAAGACCCTTTGACA+AGG | + | chr5_2:12347197-12347216 | None:intergenic | 40.0% | |
| CACAAGCAACACAATCCAAA+TGG | + | chr5_2:12347232-12347251 | None:intergenic | 40.0% | |
| AATGCAAACCCTGAAAGAAG+AGG | - | chr5_2:12347300-12347319 | Msa0757460:intron | 40.0% | |
| CATCATCTCCTCTTCTTTCA+GGG | + | chr5_2:12347311-12347330 | None:intergenic | 40.0% | |
| ACATCATCTCCTCTTCTTTC+AGG | + | chr5_2:12347312-12347331 | None:intergenic | 40.0% | |
| ! | AGAAGAGTAGTTTGCGTGAA+CGG | - | chr5_2:12347346-12347365 | Msa0757460:intron | 40.0% |
| CACAAGCAGACAGAGTTAAA+AGG | + | chr5_2:12347375-12347394 | None:intergenic | 40.0% | |
| GAGTATATGGTTCCATCATG+AGG | - | chr5_2:12347473-12347492 | Msa0757460:intron | 40.0% | |
| AGATGGCAAATGTAGCCAAA+CGG | - | chr5_2:12347540-12347559 | Msa0757460:intron | 40.0% | |
| AATTTACACGACCTCTCCTA+AGG | - | chr5_2:12347599-12347618 | Msa0757460:CDS | 40.0% | |
| CTTCATGGTTTGAGAATGCG+TGG | + | chr5_2:12344019-12344038 | None:intergenic | 45.0% | |
| TACTCCGTGTAACTGATGCT+TGG | + | chr5_2:12344472-12344491 | None:intergenic | 45.0% | |
| TTGCTATGGGAACATTCTGC+TGG | - | chr5_2:12345024-12345043 | Msa0757460:intron | 45.0% | |
| TGCTATGGGAACATTCTGCT+GGG | - | chr5_2:12345025-12345044 | Msa0757460:intron | 45.0% | |
| GCTAACAGCAGCTGTAGATA+AGG | + | chr5_2:12345051-12345070 | None:intergenic | 45.0% | |
| ACGCAACCTGCTTAAAATCG+TGG | + | chr5_2:12345079-12345098 | None:intergenic | 45.0% | |
| GCAATGAATGACTGCAATGC+TGG | + | chr5_2:12345143-12345162 | None:intergenic | 45.0% | |
| GGAGTTAGAGGAGTTGGATT+TGG | - | chr5_2:12345179-12345198 | Msa0757460:intron | 45.0% | |
| ATTGGTACTGTAGGCGGAAT+TGG | - | chr5_2:12345215-12345234 | Msa0757460:intron | 45.0% | |
| !! | TGGTGTTATGGCTACTGTCA+TGG | - | chr5_2:12345241-12345260 | Msa0757460:intron | 45.0% |
| !! | TCATGGCTGGTCAGAAGTTT+TGG | - | chr5_2:12345258-12345277 | Msa0757460:intron | 45.0% |
| !! | CATGGCTGGTCAGAAGTTTT+GGG | - | chr5_2:12345259-12345278 | Msa0757460:intron | 45.0% |
| !! | ATGGCTGGTCAGAAGTTTTG+GGG | - | chr5_2:12345260-12345279 | Msa0757460:intron | 45.0% |
| !! | GCTGCTGACTCAATGAATGT+AGG | + | chr5_2:12345495-12345514 | None:intergenic | 45.0% |
| GGAACCGGGATCAGAAATTT+AGG | - | chr5_2:12345595-12345614 | Msa0757460:CDS | 45.0% | |
| ! | AATCAGCTTTGTGTGTCAGC+AGG | - | chr5_2:12345880-12345899 | Msa0757460:intron | 45.0% |
| ! | ATCAGCTTTGTGTGTCAGCA+GGG | - | chr5_2:12345881-12345900 | Msa0757460:intron | 45.0% |
| CTAGTGTGACATCAACTTGG+AGG | - | chr5_2:12345928-12345947 | Msa0757460:intron | 45.0% | |
| !! | CATCAACTTGGAGGTACTCT+TGG | - | chr5_2:12345937-12345956 | Msa0757460:intron | 45.0% |
| GCATTATTGGGTCACTACCA+TGG | - | chr5_2:12346015-12346034 | Msa0757460:intron | 45.0% | |
| CCACATTGTGAAGAAGACCA+TGG | + | chr5_2:12346045-12346064 | None:intergenic | 45.0% | |
| CCATGGTCTTCTTCACAATG+TGG | - | chr5_2:12346042-12346061 | Msa0757460:intron | 45.0% | |
| TGGCACTCTCAAATCTCATG+TGG | + | chr5_2:12346214-12346233 | None:intergenic | 45.0% | |
| ! | CCCAAGTTGGATGCTATTGT+TGG | + | chr5_2:12346250-12346269 | None:intergenic | 45.0% |
| ATCCAATTAGCGAGATCTCC+AGG | - | chr5_2:12346408-12346427 | Msa0757460:CDS | 45.0% | |
| AACCTGGAGATCTCGCTAAT+TGG | + | chr5_2:12346413-12346432 | None:intergenic | 45.0% | |
| TTAGCGAGATCTCCAGGTTA+TGG | - | chr5_2:12346414-12346433 | Msa0757460:CDS | 45.0% | |
| TCTCCAGGTTATGGCTCAAT+CGG | - | chr5_2:12346423-12346442 | Msa0757460:CDS | 45.0% | |
| !! | AAATCGGCTAGTTTGCTGGT+TGG | + | chr5_2:12346528-12346547 | None:intergenic | 45.0% |
| CAGTCGGTTAAGCCAGAAAT+CGG | + | chr5_2:12346544-12346563 | None:intergenic | 45.0% | |
| TGTGCAATGGGATCCTTGAT+AGG | - | chr5_2:12346785-12346804 | Msa0757460:CDS | 45.0% | |
| CAATGGGATCCTTGATAGGA+GGG | - | chr5_2:12346789-12346808 | Msa0757460:CDS | 45.0% | |
| AGCTATTGACCCTCCTATCA+AGG | + | chr5_2:12346801-12346820 | None:intergenic | 45.0% | |
| CGCGCAATTTAGTGCCTTTA+TGG | - | chr5_2:12346865-12346884 | Msa0757460:intron | 45.0% | |
| GGGACTACCTCAGAAAACAT+CGG | + | chr5_2:12347016-12347035 | None:intergenic | 45.0% | |
| AGGTAGTCCCAATCAAACAC+AGG | - | chr5_2:12347026-12347045 | Msa0757460:intron | 45.0% | |
| TCTGCAAGAATGCCAACCAA+AGG | + | chr5_2:12347109-12347128 | None:intergenic | 45.0% | |
| ACTCTGTCTGCTTGTGACTT+CGG | - | chr5_2:12347379-12347398 | Msa0757460:intron | 45.0% | |
| CTTGTGACTTCGGTCCTAAA+TGG | - | chr5_2:12347389-12347408 | Msa0757460:intron | 45.0% | |
| TATGGTTCCATCATGAGGTG+AGG | - | chr5_2:12347478-12347497 | Msa0757460:intron | 45.0% | |
| TTATCAGCCTCACCTCATGA+TGG | + | chr5_2:12347488-12347507 | None:intergenic | 45.0% | |
| GCAAATGTAGCCAAACGGAT+CGG | - | chr5_2:12347545-12347564 | Msa0757460:intron | 45.0% | |
| TAATTGCGTGAGATCCGCGA+AGG | - | chr5_2:12343854-12343873 | Msa0757460:three_prime_UTR | 50.0% | |
| GGTTTGAGAATGCGTGGAAG+TGG | + | chr5_2:12344013-12344032 | None:intergenic | 50.0% | |
| CGCCGAGTTTGACGAAATGA+CGG | - | chr5_2:12344288-12344307 | Msa0757460:exon | 50.0% | |
| AATGCAGGCCCGTCTGATTT+AGG | - | chr5_2:12344912-12344931 | Msa0757460:intron | 50.0% | |
| GGACTATCATCACCACTAGC+TGG | - | chr5_2:12344966-12344985 | Msa0757460:intron | 50.0% | |
| ! | CGCTTGCCACGATTTTAAGC+AGG | - | chr5_2:12345070-12345089 | Msa0757460:intron | 50.0% |
| AGGGAAGGAGTTAGAGGAGT+TGG | - | chr5_2:12345173-12345192 | Msa0757460:intron | 50.0% | |
| ! | CGGAATTGGAGGTGGTGTTA+TGG | - | chr5_2:12345229-12345248 | Msa0757460:intron | 50.0% |
| GTTATGGCTACTGTCATGGC+TGG | - | chr5_2:12345245-12345264 | Msa0757460:intron | 50.0% | |
| AAGAAGACCATGGCAGTCCA+TGG | + | chr5_2:12346035-12346054 | None:intergenic | 50.0% | |
| !! | TCTTGCAATAACGGTGCTGC+TGG | + | chr5_2:12346150-12346169 | None:intergenic | 50.0% |
| CTCCAGGTTATGGCTCAATC+GGG | - | chr5_2:12346424-12346443 | Msa0757460:CDS | 50.0% | |
| !! | CCAGAAATCGGCTAGTTTGC+TGG | + | chr5_2:12346532-12346551 | None:intergenic | 50.0% |
| ! | CCAGCAAACTAGCCGATTTC+TGG | - | chr5_2:12346529-12346548 | Msa0757460:CDS | 50.0% |
| ! | TCTGGCTTAACCGACTGAAC+CGG | - | chr5_2:12346547-12346566 | Msa0757460:CDS | 50.0% |
| AAAAATCGGACCGAACCAGC+CGG | + | chr5_2:12346569-12346588 | None:intergenic | 50.0% | |
| GCAATGGGATCCTTGATAGG+AGG | - | chr5_2:12346788-12346807 | Msa0757460:CDS | 50.0% | |
| CTCATCTGTTGCAGCACCTT+TGG | - | chr5_2:12347090-12347109 | Msa0757460:intron | 50.0% | |
| TCTGTTGCAGCACCTTTGGT+TGG | - | chr5_2:12347094-12347113 | Msa0757460:intron | 50.0% | |
| TGAGGCTCTTGCCTTGTCAA+AGG | - | chr5_2:12347183-12347202 | Msa0757460:intron | 50.0% | |
| GAGGCTCTTGCCTTGTCAAA+GGG | - | chr5_2:12347184-12347203 | Msa0757460:intron | 50.0% | |
| ! | ATCCGCGAAGGACGCTGATT+TGG | - | chr5_2:12343866-12343885 | Msa0757460:three_prime_UTR | 55.0% |
| CACCAAATCAGCGTCCTTCG+CGG | + | chr5_2:12343871-12343890 | None:intergenic | 55.0% | |
| CACGCTCCATTATAGCAGCC+AGG | + | chr5_2:12344842-12344861 | None:intergenic | 55.0% | |
| GGTACTGTAGGCGGAATTGG+AGG | - | chr5_2:12345218-12345237 | Msa0757460:intron | 55.0% | |
| ACTGTAGGCGGAATTGGAGG+TGG | - | chr5_2:12345221-12345240 | Msa0757460:intron | 55.0% | |
| GTAGGAGATCGCTCTCTACG+AGG | + | chr5_2:12345477-12345496 | None:intergenic | 55.0% | |
| ! | GTCACTACCATGGACTGCCA+TGG | - | chr5_2:12346025-12346044 | Msa0757460:intron | 55.0% |
| GACCCGATTGAGCCATAACC+TGG | + | chr5_2:12346429-12346448 | None:intergenic | 55.0% | |
| !! | CGCGAAGGACGCTGATTTGG+TGG | - | chr5_2:12343869-12343888 | Msa0757460:three_prime_UTR | 60.0% |
| GCTTAACCGACTGAACCGGC+TGG | - | chr5_2:12346551-12346570 | Msa0757460:CDS | 60.0% | |
| ! | ACCGACTGAACCGGCTGGTT+CGG | - | chr5_2:12346556-12346575 | Msa0757460:CDS | 60.0% |
| ! | ACCGAACCAGCCGGTTCAGT+CGG | + | chr5_2:12346560-12346579 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 12343796 | 12347844 | 12343796 | ID=Msa0757460;Name=Msa0757460 |
| chr5_2 | mRNA | 12343796 | 12347844 | 12343796 | ID=Msa0757460-mRNA-1;Parent=Msa0757460;Name=Msa0757460-mRNA-1;_AED=0.03;_eAED=0.03;_QI=144|0.66|0.75|1|1|0.75|4|511|506 |
| chr5_2 | exon | 12343796 | 12344905 | 12343796 | ID=Msa0757460-mRNA-1:exon:5540;Parent=Msa0757460-mRNA-1 |
| chr5_2 | exon | 12345563 | 12345754 | 12345563 | ID=Msa0757460-mRNA-1:exon:5539;Parent=Msa0757460-mRNA-1 |
| chr5_2 | exon | 12346224 | 12346849 | 12346224 | ID=Msa0757460-mRNA-1:exon:5538;Parent=Msa0757460-mRNA-1 |
| chr5_2 | exon | 12347597 | 12347844 | 12347597 | ID=Msa0757460-mRNA-1:exon:5537;Parent=Msa0757460-mRNA-1 |
| chr5_2 | five_prime_UTR | 12347701 | 12347844 | 12347701 | ID=Msa0757460-mRNA-1:five_prime_utr;Parent=Msa0757460-mRNA-1 |
| chr5_2 | CDS | 12347597 | 12347700 | 12347597 | ID=Msa0757460-mRNA-1:cds;Parent=Msa0757460-mRNA-1 |
| chr5_2 | CDS | 12346224 | 12346849 | 12346224 | ID=Msa0757460-mRNA-1:cds;Parent=Msa0757460-mRNA-1 |
| chr5_2 | CDS | 12345563 | 12345754 | 12345563 | ID=Msa0757460-mRNA-1:cds;Parent=Msa0757460-mRNA-1 |
| chr5_2 | CDS | 12344307 | 12344905 | 12344307 | ID=Msa0757460-mRNA-1:cds;Parent=Msa0757460-mRNA-1 |
| chr5_2 | three_prime_UTR | 12343796 | 12344306 | 12343796 | ID=Msa0757460-mRNA-1:three_prime_utr;Parent=Msa0757460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
