Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798820 | XP_003611927.2 | 96.016 | 502 | 12 | 4 | 1 | 501 | 1 | 495 | 0.0 | 922 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798820 | G7KC53 | 96.016 | 502 | 12 | 4 | 1 | 501 | 1 | 495 | 0.0 | 922 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0757460 | Msa0798820 | 0.970889 | 2.625310e-132 | -8.615850e-47 |
| Msa0757510 | Msa0798820 | 0.976391 | 9.774343e-142 | -8.615850e-47 |
| Msa0757530 | Msa0798820 | 0.877436 | 6.292990e-69 | -8.615850e-47 |
| Msa0798820 | Msa0837360 | 0.889436 | 2.427153e-73 | -8.615850e-47 |
| Msa0798820 | Msa1459930 | 0.804521 | 2.076182e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798820 | MtrunA17_Chr5g0403601 | 96.016 | 502 | 12 | 4 | 1 | 501 | 1 | 495 | 0.0 | 922 |
| Msa0798820 | MtrunA17_Chr8g0382381 | 43.197 | 463 | 247 | 4 | 44 | 500 | 6 | 458 | 7.34e-124 | 372 |
| Msa0798820 | MtrunA17_Chr8g0382331 | 42.117 | 463 | 250 | 3 | 44 | 500 | 5 | 455 | 1.14e-121 | 366 |
| Msa0798820 | MtrunA17_Chr5g0425781 | 40.685 | 467 | 255 | 4 | 44 | 500 | 5 | 459 | 3.54e-118 | 357 |
| Msa0798820 | MtrunA17_Chr8g0382321 | 41.901 | 463 | 255 | 2 | 44 | 500 | 6 | 460 | 7.33e-111 | 337 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798820 | AT4G36790.1 | 69.124 | 502 | 141 | 5 | 1 | 501 | 1 | 489 | 0.0 | 676 |
| Msa0798820 | AT2G18590.1 | 57.018 | 456 | 188 | 3 | 51 | 500 | 19 | 472 | 2.40e-180 | 514 |
| Msa0798820 | AT5G10190.1 | 41.991 | 462 | 252 | 2 | 44 | 500 | 5 | 455 | 2.97e-122 | 367 |
| Msa0798820 | AT1G78130.1 | 39.957 | 463 | 263 | 4 | 44 | 500 | 5 | 458 | 2.39e-112 | 342 |
| Msa0798820 | AT5G10190.2 | 41.880 | 351 | 193 | 1 | 44 | 394 | 5 | 344 | 4.43e-87 | 271 |
| Msa0798820 | AT5G10190.3 | 39.169 | 337 | 189 | 2 | 169 | 500 | 1 | 326 | 4.81e-78 | 249 |
Find 138 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCGCAATTTAGTGCCTTTA+TGG | 0.152888 | 5_3:-11765243 | Msa0798820:CDS |
| ACATCATCTCCTCTTCTTTC+AGG | 0.153857 | 5_3:+11764799 | None:intergenic |
| AGCAATAAGTTCAAAGTATA+TGG | 0.193344 | 5_3:+11764346 | None:intergenic |
| TCATGGCTGGTCAGAAGTTT+TGG | 0.226566 | 5_3:-11766851 | Msa0798820:CDS |
| CGAAGATTTGAACTCCATTT+AGG | 0.228196 | 5_3:+11764705 | None:intergenic |
| AATGCAGGCCCGTCTGATTT+AGG | 0.243271 | 5_3:-11767197 | Msa0798820:CDS |
| GGAAAACGATGATTTGGATT+TGG | 0.247729 | 5_3:+11768131 | None:intergenic |
| ATTCCAAGTAATTGTCTTAC+AGG | 0.251672 | 5_3:-11766116 | Msa0798820:CDS |
| GCAAGTTTGAGTGCATTTAT+TGG | 0.252034 | 5_3:-11766792 | Msa0798820:CDS |
| CATTCATTGCTGATAGTTAT+AGG | 0.256064 | 5_3:-11766956 | Msa0798820:CDS |
| CACATGATTCGACCTGAATA+TGG | 0.266385 | 5_3:+11765266 | None:intergenic |
| CACAAGCAGACAGAGTTAAA+AGG | 0.272801 | 5_3:+11764736 | None:intergenic |
| TATCAACCTGGCTGCTATAA+TGG | 0.279651 | 5_3:-11767276 | Msa0798820:CDS |
| GGAGTTAGAGGAGTTGGATT+TGG | 0.291569 | 5_3:-11766930 | Msa0798820:CDS |
| CTCTTCTGTTGCAGCACCTT+TGG | 0.292837 | 5_3:-11765018 | Msa0798820:CDS |
| GAAAACGATGATTTGGATTT+GGG | 0.308169 | 5_3:+11768132 | None:intergenic |
| AGGGAAGGAGTTAGAGGAGT+TGG | 0.308211 | 5_3:-11766936 | Msa0798820:CDS |
| ATTGTCTTACAGGGCATTAT+TGG | 0.308907 | 5_3:-11766106 | Msa0798820:CDS |
| CATCATCTCCTCTTCTTTCA+GGG | 0.312070 | 5_3:+11764800 | None:intergenic |
| TTTGTGAATTTCTCTTGCTT+TGG | 0.320507 | 5_3:-11768226 | Msa0798820:five_prime_UTR |
| ACAATGTGGTTCGAACTAAT+TGG | 0.325301 | 5_3:-11766052 | Msa0798820:intron |
| TGGAGAGCTATAAATGGATT+TGG | 0.336581 | 5_3:-11767008 | Msa0798820:CDS |
| GGAAGTGGAAAACGATGATT+TGG | 0.348923 | 5_3:+11768125 | None:intergenic |
| ATTGGTACTGTAGGCGGAAT+TGG | 0.353907 | 5_3:-11766894 | Msa0798820:CDS |
| AGTTATAGGGAAGGAGTTAG+AGG | 0.355105 | 5_3:-11766942 | Msa0798820:CDS |
| ATCCGCGAAGGACGCTGATT+TGG | 0.357441 | 5_3:-11768254 | Msa0798820:five_prime_UTR |
| ACACAAATCTATCCATATTC+AGG | 0.362159 | 5_3:-11765278 | Msa0798820:CDS |
| ATTCATTGCTGATAGTTATA+GGG | 0.365814 | 5_3:-11766955 | Msa0798820:CDS |
| GAGTACTCACTTCATCTTCA+TGG | 0.375397 | 5_3:+11768089 | None:intergenic |
| AGCTATAAATGGATTTGGTT+TGG | 0.379471 | 5_3:-11767003 | Msa0798820:CDS |
| AGGGATGATTCTATCTATAA+TGG | 0.380942 | 5_3:-11766208 | Msa0798820:CDS |
| GCGCAATTTAGTGCCTTTAT+GGG | 0.381756 | 5_3:-11765242 | Msa0798820:CDS |
| ATTCTTGCAGAGAAAATGTT+TGG | 0.382692 | 5_3:-11764990 | Msa0798820:CDS |
| TTGTCTTACAGGGCATTATT+GGG | 0.383613 | 5_3:-11766105 | Msa0798820:CDS |
| TCGATTGTCTTGTCTTATCA+TGG | 0.385947 | 5_3:-11768199 | Msa0798820:exon |
| ATCATTGTCCTGTGTTTGAT+TGG | 0.387174 | 5_3:+11765074 | None:intergenic |
| CATCAACTTGGAGGTACTCT+TGG | 0.401100 | 5_3:-11766171 | Msa0798820:CDS |
| TTAATACCAAACATTTCAAA+AGG | 0.402906 | 5_3:-11764534 | Msa0798820:three_prime_UTR |
| CTTGTGACTTCGGTCCTAAA+TGG | 0.405691 | 5_3:-11764719 | Msa0798820:three_prime_UTR |
| AACTTTGATGACAGATTTAG+TGG | 0.406804 | 5_3:+11766144 | None:intergenic |
| AGTAAACATGAAACATTTGC+AGG | 0.414201 | 5_3:-11764680 | Msa0798820:three_prime_UTR |
| TGAGAATGGAATGCCCATAA+AGG | 0.423692 | 5_3:+11765229 | None:intergenic |
| TCAATGATGGCAATTCCATT+TGG | 0.426554 | 5_3:-11764894 | Msa0798820:CDS |
| TTTGCTATTGGATGTGCAAT+GGG | 0.426804 | 5_3:-11765335 | Msa0798820:CDS |
| ATGATGTTTAAATAGACCTT+AGG | 0.429607 | 5_3:+11764493 | None:intergenic |
| CGGAATTGGAGGTGGTGTTA+TGG | 0.435818 | 5_3:-11766880 | Msa0798820:CDS |
| CTAACTTCTTTGTAGACTGC+TGG | 0.445710 | 5_3:+11767230 | None:intergenic |
| TAGGTTACCTCACATTCATA+AGG | 0.446153 | 5_3:-11767178 | Msa0798820:CDS |
| TGAGGCTCTTGCCTTGTCAA+AGG | 0.450694 | 5_3:-11764925 | Msa0798820:CDS |
| TCTGTTGCAGCACCTTTGGT+TGG | 0.450921 | 5_3:-11765014 | Msa0798820:CDS |
| TCAGCTGAAGATCCTTTGAT+AGG | 0.451456 | 5_3:+11764945 | None:intergenic |
| TTCATAAGGAACTTTGTTCA+AGG | 0.451557 | 5_3:-11767164 | Msa0798820:CDS |
| ACAAGCAGACAGAGTTAAAA+GGG | 0.455125 | 5_3:+11764737 | None:intergenic |
| ATTGTATTATGTATTTAAGA+AGG | 0.457056 | 5_3:-11764847 | Msa0798820:CDS |
| TTAAATATGTCCGATCCGTT+TGG | 0.457641 | 5_3:+11764553 | None:intergenic |
| TTGCTATGGGAACATTCTGC+TGG | 0.459474 | 5_3:-11767085 | Msa0798820:CDS |
| CGCGAAGGACGCTGATTTGG+TGG | 0.461134 | 5_3:-11768251 | Msa0798820:five_prime_UTR |
| TTATGGGCATTCCATTCTCA+TGG | 0.462787 | 5_3:-11765226 | Msa0798820:CDS |
| CACAAGCAACACAATCCAAA+TGG | 0.463522 | 5_3:+11764879 | None:intergenic |
| GTTCCCATAGCAAGTATTGT+TGG | 0.463630 | 5_3:+11767095 | None:intergenic |
| GAGGCTCTTGCCTTGTCAAA+GGG | 0.464791 | 5_3:-11764924 | Msa0798820:CDS |
| AAAGGGTCTTCTTTCAATGA+TGG | 0.467546 | 5_3:-11764907 | Msa0798820:CDS |
| CGATTGTCTTGTCTTATCAT+GGG | 0.468458 | 5_3:-11768198 | Msa0798820:exon |
| TCATTGTCCTGTGTTTGATT+GGG | 0.470929 | 5_3:+11765075 | None:intergenic |
| ACTCTGTCTGCTTGTGACTT+CGG | 0.472536 | 5_3:-11764729 | Msa0798820:three_prime_UTR |
| TTATGGGACTAACTATAAGC+TGG | 0.478256 | 5_3:-11765139 | Msa0798820:CDS |
| ATTAACATTGTTAAAGTACA+AGG | 0.479093 | 5_3:+11764404 | None:intergenic |
| CTAAATGGAGTTCAAATCTT+CGG | 0.480480 | 5_3:-11764704 | Msa0798820:three_prime_UTR |
| CACCAAATCAGCGTCCTTCG+CGG | 0.486892 | 5_3:+11768252 | None:intergenic |
| GCAATGAATGACTGCAATGC+TGG | 0.486956 | 5_3:+11766969 | None:intergenic |
| CTAAGAAGAAACCATGAGAA+TGG | 0.487296 | 5_3:+11765215 | None:intergenic |
| TAGACCAACAATACTTGCTA+TGG | 0.488171 | 5_3:-11767099 | Msa0798820:CDS |
| TAATACCAAACATTTCAAAA+GGG | 0.488362 | 5_3:-11764533 | Msa0798820:three_prime_UTR |
| TTCTCACTAGCATCTTGAAT+GGG | 0.489483 | 5_3:+11766723 | None:intergenic |
| CAATTCAATAAAGCAACTAA+TGG | 0.494567 | 5_3:+11764305 | None:intergenic |
| GCAATAAGTTCAAAGTATAT+GGG | 0.500238 | 5_3:+11764347 | None:intergenic |
| TGCTATGGGAACATTCTGCT+GGG | 0.500869 | 5_3:-11767084 | Msa0798820:CDS |
| TGTGCAATGGGATCCTTGAT+AGG | 0.503894 | 5_3:-11765323 | Msa0798820:CDS |
| GCTAACAGCAGCTGTAGATA+AGG | 0.506088 | 5_3:+11767061 | None:intergenic |
| TTCACTCATTCTTATCAACC+TGG | 0.507417 | 5_3:-11767288 | Msa0798820:CDS |
| AGCTATTGACCCTCCTATCA+AGG | 0.512037 | 5_3:+11765310 | None:intergenic |
| TGCCCTGTAAGACAATTACT+TGG | 0.516786 | 5_3:+11766113 | None:intergenic |
| ATCAACTTGGAGGTACTCTT+GGG | 0.517727 | 5_3:-11766170 | Msa0798820:CDS |
| GAATTGTCTTATATTTGCTT+AGG | 0.519916 | 5_3:-11764288 | Msa0798820:three_prime_UTR |
| AGAAAACTAGTTACTGATTG+AGG | 0.527052 | 5_3:+11765185 | None:intergenic |
| ACAATTGCTTATACTTGAGA+TGG | 0.532079 | 5_3:-11764585 | Msa0798820:three_prime_UTR |
| ATTCTCACTAGCATCTTGAA+TGG | 0.533216 | 5_3:+11766722 | None:intergenic |
| GGACTAACTATAAGCTGGAA+TGG | 0.534983 | 5_3:-11765134 | Msa0798820:CDS |
| CACGCTCCATTATAGCAGCC+AGG | 0.535980 | 5_3:+11767270 | None:intergenic |
| AACTATAAGCTGGAATGGTA+CGG | 0.538107 | 5_3:-11765129 | Msa0798820:CDS |
| AGAAGAGTAGTTTGCGTGAA+CGG | 0.539793 | 5_3:-11764762 | Msa0798820:three_prime_UTR |
| GTTAGTGAAGCATTCAATGC+AGG | 0.545523 | 5_3:-11767212 | Msa0798820:CDS |
| ATGCTAGTGTGACATCAACT+TGG | 0.545853 | 5_3:-11766183 | Msa0798820:CDS |
| GGTTTGAGAATGCGTGGAAG+TGG | 0.548461 | 5_3:+11768110 | None:intergenic |
| GGACTATCATCACCACTAGC+TGG | 0.550906 | 5_3:-11767143 | Msa0798820:CDS |
| ACTGTAGGCGGAATTGGAGG+TGG | 0.551168 | 5_3:-11766888 | Msa0798820:CDS |
| AATGCAAACCCTGAAAGAAG+AGG | 0.551409 | 5_3:-11764808 | Msa0798820:CDS |
| AAATCTGTTGATCCTATCAA+AGG | 0.553054 | 5_3:-11764957 | Msa0798820:CDS |
| TCTTCAAGTAAAAGAAAATG+AGG | 0.553461 | 5_3:+11764656 | None:intergenic |
| GTTATGGCTACTGTCATGGC+TGG | 0.556439 | 5_3:-11766864 | Msa0798820:CDS |
| TGGTGTTATGGCTACTGTCA+TGG | 0.560251 | 5_3:-11766868 | Msa0798820:CDS |
| AATTTACACGACCTCTCCTA+AGG | 0.568662 | 5_3:-11764509 | Msa0798820:three_prime_UTR |
| CTTCATGGTTTGAGAATGCG+TGG | 0.577954 | 5_3:+11768104 | None:intergenic |
| GGTACTGTAGGCGGAATTGG+AGG | 0.579698 | 5_3:-11766891 | Msa0798820:CDS |
| CTAGTGTGACATCAACTTGG+AGG | 0.579784 | 5_3:-11766180 | Msa0798820:CDS |
| AGATGGCAAATGTAGCCAAA+CGG | 0.580720 | 5_3:-11764568 | Msa0798820:three_prime_UTR |
| AAGAAGACCATGGCAGTCCA+TGG | 0.581215 | 5_3:+11766076 | None:intergenic |
| TTATCAGCCTCACCTCATGA+TGG | 0.583162 | 5_3:+11764623 | None:intergenic |
| CAATGGGATCCTTGATAGGA+GGG | 0.586366 | 5_3:-11765319 | Msa0798820:CDS |
| CCATGGTCTTCTTCACAATG+TGG | 0.588693 | 5_3:-11766066 | Msa0798820:CDS |
| CAAAGTTCCTTATGAATGTG+AGG | 0.588860 | 5_3:+11767171 | None:intergenic |
| GCAATGGGATCCTTGATAGG+AGG | 0.591989 | 5_3:-11765320 | Msa0798820:CDS |
| AGACCAACAATACTTGCTAT+GGG | 0.595257 | 5_3:-11767098 | Msa0798820:CDS |
| GTCACTACCATGGACTGCCA+TGG | 0.600615 | 5_3:-11766083 | Msa0798820:CDS |
| GTGAGGTAACCTAAATCAGA+CGG | 0.604891 | 5_3:+11767188 | None:intergenic |
| CATCCACGTATAGTAAAACA+AGG | 0.606809 | 5_3:+11766766 | None:intergenic |
| GCATTATTGGGTCACTACCA+TGG | 0.609004 | 5_3:-11766093 | Msa0798820:CDS |
| GAGTATATGGTTCCATCATG+AGG | 0.610169 | 5_3:-11764635 | Msa0798820:three_prime_UTR |
| ATTGCTGATAGTTATAGGGA+AGG | 0.611447 | 5_3:-11766951 | Msa0798820:CDS |
| TTCCAAGTAATTGTCTTACA+GGG | 0.612324 | 5_3:-11766115 | Msa0798820:CDS |
| GCAAATGTAGCCAAACGGAT+CGG | 0.620635 | 5_3:-11764563 | Msa0798820:three_prime_UTR |
| TTAACATTGTTAAAGTACAA+GGG | 0.623156 | 5_3:+11764405 | None:intergenic |
| TGAGGTAACCTAAATCAGAC+GGG | 0.623759 | 5_3:+11767189 | None:intergenic |
| TTCTTAAATACATAATACAA+TGG | 0.630614 | 5_3:+11764849 | None:intergenic |
| CAAACTTGCCATCAAAACAA+AGG | 0.638977 | 5_3:+11766806 | None:intergenic |
| TGAAAGAAGACCCTTTGACA+AGG | 0.642266 | 5_3:+11764914 | None:intergenic |
| ACGCAACCTGCTTAAAATCG+TGG | 0.645780 | 5_3:+11767033 | None:intergenic |
| TCTGCAAGAATGCCAACCAA+AGG | 0.651073 | 5_3:+11765002 | None:intergenic |
| GTAAACATGAAACATTTGCA+GGG | 0.658169 | 5_3:-11764679 | Msa0798820:three_prime_UTR |
| TAATTGCGTGAGATCCGCGA+AGG | 0.664156 | 5_3:-11768266 | Msa0798820:five_prime_UTR |
| TATGGTTCCATCATGAGGTG+AGG | 0.665674 | 5_3:-11764630 | Msa0798820:three_prime_UTR |
| GTTTAAATAGACCTTAGGAG+AGG | 0.671149 | 5_3:+11764498 | None:intergenic |
| ATAACAAGTATACCAGCTAG+TGG | 0.681249 | 5_3:+11767131 | None:intergenic |
| TATCAAAGGATCTTCAGCTG+AGG | 0.682943 | 5_3:-11764943 | Msa0798820:CDS |
| AGGTAGTCCCAATCAAACAC+AGG | 0.688738 | 5_3:-11765082 | Msa0798820:CDS |
| GGGACTACCTCAGAAAACAT+CGG | 0.700159 | 5_3:+11765095 | None:intergenic |
| ATGCTAGTGAGAATTCCGAA+AGG | 0.706334 | 5_3:-11766713 | Msa0798820:intron |
| CCACATTGTGAAGAAGACCA+TGG | 0.717544 | 5_3:+11766066 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTTAGAATAAAATTTTAA+AGG | - | chr5_3:11765063-11765082 | Msa0798820:CDS | 10.0% |
| !!! | ACTTAGAATAAAATTTTAAA+GGG | - | chr5_3:11765064-11765083 | Msa0798820:CDS | 10.0% |
| !!! | AAATCTATTTTAAAAACCTT+TGG | + | chr5_3:11764684-11764703 | None:intergenic | 15.0% |
| !!! | TTTTTTTATGCAAAAACTAT+AGG | - | chr5_3:11764738-11764757 | Msa0798820:three_prime_UTR | 15.0% |
| !!! | TTTAGTTTTTGTTGAAATTA+CGG | - | chr5_3:11764840-11764859 | Msa0798820:CDS | 15.0% |
| !!! | ATATAATGAATTGCATTTTA+TGG | - | chr5_3:11765241-11765260 | Msa0798820:CDS | 15.0% |
| !!! | TATAATGAATTGCATTTTAT+GGG | - | chr5_3:11765242-11765261 | Msa0798820:CDS | 15.0% |
| !! | AAAATAAATCAAAAACTGAA+TGG | + | chr5_3:11766215-11766234 | None:intergenic | 15.0% |
| !! | TTCTTAAATACATAATACAA+TGG | + | chr5_3:11767764-11767783 | None:intergenic | 15.0% |
| !! | ATTGTATTATGTATTTAAGA+AGG | - | chr5_3:11767763-11767782 | Msa0798820:intron | 15.0% |
| !! | TTTAGTTAGAAGAATATTCA+TGG | - | chr5_3:11764616-11764635 | Msa0798820:three_prime_UTR | 20.0% |
| !! | TTTCAACAAAAACTAAATCT+TGG | + | chr5_3:11764837-11764856 | None:intergenic | 20.0% |
| !! | GTTAAATATATGCTTTGATT+TGG | - | chr5_3:11765086-11765105 | Msa0798820:CDS | 20.0% |
| !! | AATTGAAAGAAGTAAGTAAA+AGG | + | chr5_3:11765205-11765224 | None:intergenic | 20.0% |
| !! | TAAACAATATAACAGTTTGA+AGG | + | chr5_3:11766296-11766315 | None:intergenic | 20.0% |
| !! | GTAGATTATATAATTGTACA+AGG | - | chr5_3:11766789-11766808 | Msa0798820:CDS | 20.0% |
| !!! | GGTTCCAATATTTTAAAAAT+CGG | + | chr5_3:11767085-11767104 | None:intergenic | 20.0% |
| !!! | ACTTCTTCAAATTTTATGAA+AGG | - | chr5_3:11767136-11767155 | Msa0798820:CDS | 20.0% |
| !! | TTAATACCAAACATTTCAAA+AGG | - | chr5_3:11768076-11768095 | Msa0798820:intron | 20.0% |
| !! | TAATACCAAACATTTCAAAA+GGG | - | chr5_3:11768077-11768096 | Msa0798820:intron | 20.0% |
| !! | TCACTTAAATGCAAAAATAA+GGG | + | chr5_3:11768176-11768195 | None:intergenic | 20.0% |
| !! | TTAACATTGTTAAAGTACAA+GGG | + | chr5_3:11768208-11768227 | None:intergenic | 20.0% |
| !! | ATTAACATTGTTAAAGTACA+AGG | + | chr5_3:11768209-11768228 | None:intergenic | 20.0% |
| ! | GTTTATTATGCTAATGATCA+AGG | + | chr5_3:11765043-11765062 | None:intergenic | 25.0% |
| ! | CTTTGATATTGAGAAAAATG+AGG | - | chr5_3:11765134-11765153 | Msa0798820:CDS | 25.0% |
| ! | GAAGAAAATCATACAAAGTT+TGG | + | chr5_3:11765183-11765202 | None:intergenic | 25.0% |
| !! | AGAACAACAATACAGATTTT+TGG | - | chr5_3:11765290-11765309 | Msa0798820:CDS | 25.0% |
| ! | ATTCATTGCTGATAGTTATA+GGG | - | chr5_3:11765655-11765674 | Msa0798820:intron | 25.0% |
| !!! | TTTGGAGTAGTAAGTTTTAT+TGG | - | chr5_3:11765698-11765717 | Msa0798820:intron | 25.0% |
| ! | ACATTACTCATGTGAAATTT+AGG | - | chr5_3:11765943-11765962 | Msa0798820:intron | 25.0% |
| ! | AAATTTGAGCCTTTATCAAA+CGG | + | chr5_3:11766026-11766045 | None:intergenic | 25.0% |
| !!! | TTTGAAGGCATTTATTTACT+TGG | + | chr5_3:11766281-11766300 | None:intergenic | 25.0% |
| ! | ATGTAACAAAATACAAGAAC+AGG | - | chr5_3:11766829-11766848 | Msa0798820:CDS | 25.0% |
| ! | TATTATTATCAAAACCTGCA+TGG | + | chr5_3:11767232-11767251 | None:intergenic | 25.0% |
| ! | TCTTCAAGTAAAAGAAAATG+AGG | + | chr5_3:11767957-11767976 | None:intergenic | 25.0% |
| !!! | TCTTTTACTTGAAGAGTATA+TGG | - | chr5_3:11767962-11767981 | Msa0798820:intron | 25.0% |
| !!! | AATTTCCCTTTTGAAATGTT+TGG | + | chr5_3:11768085-11768104 | None:intergenic | 25.0% |
| ! | ATGATGTTTAAATAGACCTT+AGG | + | chr5_3:11768120-11768139 | None:intergenic | 25.0% |
| ! | GTCACTTAAATGCAAAAATA+AGG | + | chr5_3:11768177-11768196 | None:intergenic | 25.0% |
| ! | GCAATAAGTTCAAAGTATAT+GGG | + | chr5_3:11768266-11768285 | None:intergenic | 25.0% |
| ! | AGCAATAAGTTCAAAGTATA+TGG | + | chr5_3:11768267-11768286 | None:intergenic | 25.0% |
| ! | CAATTCAATAAAGCAACTAA+TGG | + | chr5_3:11768308-11768327 | None:intergenic | 25.0% |
| ! | GAATTGTCTTATATTTGCTT+AGG | - | chr5_3:11768322-11768341 | Msa0798820:five_prime_UTR | 25.0% |
| TTTGTGAATTTCTCTTGCTT+TGG | - | chr5_3:11764384-11764403 | Msa0798820:three_prime_UTR | 30.0% | |
| ! | AGATGTTGTGCTATGTTTTT+GGG | + | chr5_3:11764449-11764468 | None:intergenic | 30.0% |
| ! | TAGATGTTGTGCTATGTTTT+TGG | + | chr5_3:11764450-11764469 | None:intergenic | 30.0% |
| ! | GAAAACGATGATTTGGATTT+GGG | + | chr5_3:11764481-11764500 | None:intergenic | 30.0% |
| CAAAGAAAGAAAGAAACGTA+AGG | + | chr5_3:11764546-11764565 | None:intergenic | 30.0% | |
| CTAAATAACAGAACAGAATC+AGG | + | chr5_3:11764601-11764620 | None:intergenic | 30.0% | |
| ! | AGACTTAGAGAATTTTCCAA+AGG | - | chr5_3:11764665-11764684 | Msa0798820:three_prime_UTR | 30.0% |
| ACGATAGTTAGACAAAATCA+CGG | + | chr5_3:11764873-11764892 | None:intergenic | 30.0% | |
| AATTCAAACATGCACAAAAC+TGG | - | chr5_3:11764894-11764913 | Msa0798820:CDS | 30.0% | |
| ! | AAATCTGTATTGTTGTTCTG+TGG | + | chr5_3:11765289-11765308 | None:intergenic | 30.0% |
| TTCATAAGGAACTTTGTTCA+AGG | - | chr5_3:11765446-11765465 | Msa0798820:intron | 30.0% | |
| ! | AGCTATAAATGGATTTGGTT+TGG | - | chr5_3:11765607-11765626 | Msa0798820:intron | 30.0% |
| CATTCATTGCTGATAGTTAT+AGG | - | chr5_3:11765654-11765673 | Msa0798820:intron | 30.0% | |
| !!! | GTAAGTTTTATTGGTACTGT+AGG | - | chr5_3:11765707-11765726 | Msa0798820:intron | 30.0% |
| !!! | AATCCTTGTTTTACTATACG+TGG | - | chr5_3:11765841-11765860 | Msa0798820:intron | 30.0% |
| ! | ATGGGAGAAAATCTTTTTCT+TGG | + | chr5_3:11765872-11765891 | None:intergenic | 30.0% |
| ACCTAGTGAATTAAACTACA+TGG | - | chr5_3:11766076-11766095 | Msa0798820:CDS | 30.0% | |
| TCCATGTAGTTTAATTCACT+AGG | + | chr5_3:11766080-11766099 | None:intergenic | 30.0% | |
| TGAATTAAACTACATGGAAC+CGG | - | chr5_3:11766082-11766101 | Msa0798820:CDS | 30.0% | |
| GATTCTTTGTAGTCAAATAG+TGG | - | chr5_3:11766126-11766145 | Msa0798820:CDS | 30.0% | |
| AACTACTGATCAAAATCAGA+TGG | + | chr5_3:11766169-11766188 | None:intergenic | 30.0% | |
| GCTAAATTTCAGCATTCATT+CGG | + | chr5_3:11766240-11766259 | None:intergenic | 30.0% | |
| TTATTTGTCAGTTAGTCATG+AGG | + | chr5_3:11766322-11766341 | None:intergenic | 30.0% | |
| TGAATGCTTTCATATGTCTT+TGG | - | chr5_3:11766343-11766362 | Msa0798820:intron | 30.0% | |
| AGGGATGATTCTATCTATAA+TGG | - | chr5_3:11766402-11766421 | Msa0798820:intron | 30.0% | |
| ! | AACTTTGATGACAGATTTAG+TGG | + | chr5_3:11766469-11766488 | None:intergenic | 30.0% |
| ATTCCAAGTAATTGTCTTAC+AGG | - | chr5_3:11766494-11766513 | Msa0798820:intron | 30.0% | |
| TTCCAAGTAATTGTCTTACA+GGG | - | chr5_3:11766495-11766514 | Msa0798820:intron | 30.0% | |
| AAGTTGAGTTCTTGCAATAA+CGG | + | chr5_3:11766661-11766680 | None:intergenic | 30.0% | |
| TTATTGCAAGAACTCAACTT+TGG | - | chr5_3:11766661-11766680 | Msa0798820:intron | 30.0% | |
| AGTAAGTTAAAAACCCAAGT+TGG | + | chr5_3:11766765-11766784 | None:intergenic | 30.0% | |
| TTTGTCATCCGATTCAATAA+TGG | + | chr5_3:11766956-11766975 | None:intergenic | 30.0% | |
| !!! | CGGTCCGATTTTTAAAATAT+TGG | - | chr5_3:11767078-11767097 | Msa0798820:CDS | 30.0% |
| ATTACACCATTTCTACTACT+TGG | + | chr5_3:11767106-11767125 | None:intergenic | 30.0% | |
| AATAGCAAAAAGACTTAGGA+GGG | + | chr5_3:11767264-11767283 | None:intergenic | 30.0% | |
| ATCCAATAGCAAAAAGACTT+AGG | + | chr5_3:11767268-11767287 | None:intergenic | 30.0% | |
| ACACAAATCTATCCATATTC+AGG | - | chr5_3:11767332-11767351 | Msa0798820:intron | 30.0% | |
| ! | AGAAAACTAGTTACTGATTG+AGG | + | chr5_3:11767428-11767447 | None:intergenic | 30.0% |
| ! | AAAAAAGAGTGTGATCGAAA+AGG | + | chr5_3:11767453-11767472 | None:intergenic | 30.0% |
| !!! | TTCGATCACACTCTTTTTTA+TGG | - | chr5_3:11767454-11767473 | Msa0798820:intron | 30.0% |
| !!! | TCGATCACACTCTTTTTTAT+GGG | - | chr5_3:11767455-11767474 | Msa0798820:intron | 30.0% |
| ATTCTTGCAGAGAAAATGTT+TGG | - | chr5_3:11767620-11767639 | Msa0798820:intron | 30.0% | |
| AAATCTGTTGATCCTATCAA+AGG | - | chr5_3:11767653-11767672 | Msa0798820:intron | 30.0% | |
| CTAAATGGAGTTCAAATCTT+CGG | - | chr5_3:11767906-11767925 | Msa0798820:intron | 30.0% | |
| AGTAAACATGAAACATTTGC+AGG | - | chr5_3:11767930-11767949 | Msa0798820:intron | 30.0% | |
| GTAAACATGAAACATTTGCA+GGG | - | chr5_3:11767931-11767950 | Msa0798820:intron | 30.0% | |
| ACAATTGCTTATACTTGAGA+TGG | - | chr5_3:11768025-11768044 | Msa0798820:intron | 30.0% | |
| AGTGTCAATCTAAAAAGTAG+AGG | + | chr5_3:11768148-11768167 | None:intergenic | 30.0% | |
| CTTAAATGCAAAAATAAGGG+AGG | + | chr5_3:11768173-11768192 | None:intergenic | 30.0% | |
| TCGATTGTCTTGTCTTATCA+TGG | - | chr5_3:11764411-11764430 | Msa0798820:three_prime_UTR | 35.0% | |
| CGATTGTCTTGTCTTATCAT+GGG | - | chr5_3:11764412-11764431 | Msa0798820:three_prime_UTR | 35.0% | |
| ! | GGAAAACGATGATTTGGATT+TGG | + | chr5_3:11764482-11764501 | None:intergenic | 35.0% |
| TTCACTCATTCTTATCAACC+TGG | - | chr5_3:11765322-11765341 | Msa0798820:CDS | 35.0% | |
| ! | TGCTGGAAGAAGATTTTCAT+CGG | + | chr5_3:11765366-11765385 | None:intergenic | 35.0% |
| TAGGTTACCTCACATTCATA+AGG | - | chr5_3:11765432-11765451 | Msa0798820:intron | 35.0% | |
| CAAAGTTCCTTATGAATGTG+AGG | + | chr5_3:11765442-11765461 | None:intergenic | 35.0% | |
| ATAACAAGTATACCAGCTAG+TGG | + | chr5_3:11765482-11765501 | None:intergenic | 35.0% | |
| ! | TAGACCAACAATACTTGCTA+TGG | - | chr5_3:11765511-11765530 | Msa0798820:intron | 35.0% |
| !! | AGACCAACAATACTTGCTAT+GGG | - | chr5_3:11765512-11765531 | Msa0798820:intron | 35.0% |
| ! | ATTTTAAGCAGGTTGCGTTT+TGG | - | chr5_3:11765582-11765601 | Msa0798820:intron | 35.0% |
| ! | TGGAGAGCTATAAATGGATT+TGG | - | chr5_3:11765602-11765621 | Msa0798820:intron | 35.0% |
| ATTGCTGATAGTTATAGGGA+AGG | - | chr5_3:11765659-11765678 | Msa0798820:intron | 35.0% | |
| !!! | AGTTTTATTGGTACTGTAGG+CGG | - | chr5_3:11765710-11765729 | Msa0798820:intron | 35.0% |
| CAAACTTGCCATCAAAACAA+AGG | + | chr5_3:11765807-11765826 | None:intergenic | 35.0% | |
| GCAAGTTTGAGTGCATTTAT+TGG | - | chr5_3:11765818-11765837 | Msa0798820:intron | 35.0% | |
| CATCCACGTATAGTAAAACA+AGG | + | chr5_3:11765847-11765866 | None:intergenic | 35.0% | |
| TTCTCACTAGCATCTTGAAT+GGG | + | chr5_3:11765890-11765909 | None:intergenic | 35.0% | |
| ATTCTCACTAGCATCTTGAA+TGG | + | chr5_3:11765891-11765910 | None:intergenic | 35.0% | |
| GAATGTTGTTCCTTACCTTT+CGG | + | chr5_3:11765915-11765934 | None:intergenic | 35.0% | |
| AGCTCAATACCGTTTGATAA+AGG | - | chr5_3:11766014-11766033 | Msa0798820:intron | 35.0% | |
| GAATTAAACTACATGGAACC+GGG | - | chr5_3:11766083-11766102 | Msa0798820:CDS | 35.0% | |
| TTTCCCTAAATTTCTGATCC+CGG | + | chr5_3:11766104-11766123 | None:intergenic | 35.0% | |
| !! | GAAGGCATTTATTTACTTGG+AGG | + | chr5_3:11766278-11766297 | None:intergenic | 35.0% |
| ! | ATTGTCTTACAGGGCATTAT+TGG | - | chr5_3:11766504-11766523 | Msa0798820:intron | 35.0% |
| ! | TTGTCTTACAGGGCATTATT+GGG | - | chr5_3:11766505-11766524 | Msa0798820:intron | 35.0% |
| ACAATGTGGTTCGAACTAAT+TGG | - | chr5_3:11766558-11766577 | Msa0798820:intron | 35.0% | |
| CAAATCTCATGTGGTATCTT+TGG | + | chr5_3:11766707-11766726 | None:intergenic | 35.0% | |
| TTGTTGGAGTGAAAAGTAGT+TGG | + | chr5_3:11766736-11766755 | None:intergenic | 35.0% | |
| !! | TTAGTTTTTAACGCACTGCT+TGG | + | chr5_3:11766883-11766902 | None:intergenic | 35.0% |
| CAGTGCGTTAAAAACTAAAC+TGG | - | chr5_3:11766885-11766904 | Msa0798820:CDS | 35.0% | |
| TTGGAACCAAGTAGTAGAAA+TGG | - | chr5_3:11767097-11767116 | Msa0798820:CDS | 35.0% | |
| ATTCATTGTGTCAAGCAAGT+AGG | + | chr5_3:11767202-11767221 | None:intergenic | 35.0% | |
| CAATAGCAAAAAGACTTAGG+AGG | + | chr5_3:11767265-11767284 | None:intergenic | 35.0% | |
| !! | CTCCTAAGTCTTTTTGCTAT+TGG | - | chr5_3:11767263-11767282 | Msa0798820:CDS | 35.0% |
| !!! | TTTTGCTATTGGATGTGCAA+TGG | - | chr5_3:11767274-11767293 | Msa0798820:CDS | 35.0% |
| !! | TTTGCTATTGGATGTGCAAT+GGG | - | chr5_3:11767275-11767294 | Msa0798820:CDS | 35.0% |
| CTAAGAAGAAACCATGAGAA+TGG | + | chr5_3:11767398-11767417 | None:intergenic | 35.0% | |
| TTATGGGACTAACTATAAGC+TGG | - | chr5_3:11767471-11767490 | Msa0798820:intron | 35.0% | |
| AACTATAAGCTGGAATGGTA+CGG | - | chr5_3:11767481-11767500 | Msa0798820:intron | 35.0% | |
| TCATTGTCCTGTGTTTGATT+GGG | + | chr5_3:11767538-11767557 | None:intergenic | 35.0% | |
| ATCATTGTCCTGTGTTTGAT+TGG | + | chr5_3:11767539-11767558 | None:intergenic | 35.0% | |
| ! | GCATTTGATAGAGCTTTTGA+AGG | - | chr5_3:11767563-11767582 | Msa0798820:intron | 35.0% |
| AAAGGGTCTTCTTTCAATGA+TGG | - | chr5_3:11767703-11767722 | Msa0798820:intron | 35.0% | |
| TCAATGATGGCAATTCCATT+TGG | - | chr5_3:11767716-11767735 | Msa0798820:intron | 35.0% | |
| ! | TTTGCATTCTAGCATTTTCG+CGG | + | chr5_3:11767790-11767809 | None:intergenic | 35.0% |
| ACAAGCAGACAGAGTTAAAA+GGG | + | chr5_3:11767876-11767895 | None:intergenic | 35.0% | |
| CGAAGATTTGAACTCCATTT+AGG | + | chr5_3:11767908-11767927 | None:intergenic | 35.0% | |
| TTAAATATGTCCGATCCGTT+TGG | + | chr5_3:11768060-11768079 | None:intergenic | 35.0% | |
| GTTTAAATAGACCTTAGGAG+AGG | + | chr5_3:11768115-11768134 | None:intergenic | 35.0% | |
| GGAAGTGGAAAACGATGATT+TGG | + | chr5_3:11764488-11764507 | None:intergenic | 40.0% | |
| GAGTACTCACTTCATCTTCA+TGG | + | chr5_3:11764524-11764543 | None:intergenic | 40.0% | |
| CTAAACGCTCACTTGTATGT+TGG | + | chr5_3:11764764-11764783 | None:intergenic | 40.0% | |
| TACCGTCATTTCGTCAAACT+CGG | + | chr5_3:11764794-11764813 | None:intergenic | 40.0% | |
| TTCTCCAAGCATCAGTTACA+CGG | - | chr5_3:11764966-11764985 | Msa0798820:CDS | 40.0% | |
| TATCAACCTGGCTGCTATAA+TGG | - | chr5_3:11765334-11765353 | Msa0798820:CDS | 40.0% | |
| CTAACTTCTTTGTAGACTGC+TGG | + | chr5_3:11765383-11765402 | None:intergenic | 40.0% | |
| ! | GTTAGTGAAGCATTCAATGC+AGG | - | chr5_3:11765398-11765417 | Msa0798820:intron | 40.0% |
| TGAGGTAACCTAAATCAGAC+GGG | + | chr5_3:11765424-11765443 | None:intergenic | 40.0% | |
| GTGAGGTAACCTAAATCAGA+CGG | + | chr5_3:11765425-11765444 | None:intergenic | 40.0% | |
| ! | GTTCCCATAGCAAGTATTGT+TGG | + | chr5_3:11765518-11765537 | None:intergenic | 40.0% |
| !!! | GCGTTTTGGAGAGCTATAAA+TGG | - | chr5_3:11765596-11765615 | Msa0798820:intron | 40.0% |
| AGTTATAGGGAAGGAGTTAG+AGG | - | chr5_3:11765668-11765687 | Msa0798820:intron | 40.0% | |
| !!! | CAGAAGTTTTGGGGAATAGA+TGG | - | chr5_3:11765770-11765789 | Msa0798820:intron | 40.0% |
| !!! | AGTTTTGGGGAATAGATGGA+TGG | - | chr5_3:11765774-11765793 | Msa0798820:intron | 40.0% |
| !!! | GAGATGTGCCTTTGTTTTGA+TGG | - | chr5_3:11765796-11765815 | Msa0798820:intron | 40.0% |
| ATGCTAGTGAGAATTCCGAA+AGG | - | chr5_3:11765897-11765916 | Msa0798820:intron | 40.0% | |
| AGTGAGAATTCCGAAAGGTA+AGG | - | chr5_3:11765902-11765921 | Msa0798820:intron | 40.0% | |
| ! | GCTCAAATTTTGTGCTCGAT+CGG | - | chr5_3:11766036-11766055 | Msa0798820:intron | 40.0% |
| ! | AAATTTTGTGCTCGATCGGA+TGG | - | chr5_3:11766040-11766059 | Msa0798820:intron | 40.0% |
| GAACCGGGATCAGAAATTTA+GGG | - | chr5_3:11766098-11766117 | Msa0798820:CDS | 40.0% | |
| TGTAGTCAAATAGTGGCTGT+AGG | - | chr5_3:11766133-11766152 | Msa0798820:CDS | 40.0% | |
| ATGCTAGTGTGACATCAACT+TGG | - | chr5_3:11766427-11766446 | Msa0798820:intron | 40.0% | |
| !! | ATCAACTTGGAGGTACTCTT+GGG | - | chr5_3:11766440-11766459 | Msa0798820:intron | 40.0% |
| TGCCCTGTAAGACAATTACT+TGG | + | chr5_3:11766500-11766519 | None:intergenic | 40.0% | |
| GTATCTTTGGACGACAAGAA+AGG | + | chr5_3:11766694-11766713 | None:intergenic | 40.0% | |
| TCCAACAATAGCATCCAACT+TGG | - | chr5_3:11766748-11766767 | Msa0798820:CDS | 40.0% | |
| CCAACAATAGCATCCAACTT+GGG | - | chr5_3:11766749-11766768 | Msa0798820:CDS | 40.0% | |
| CGGGTCAACCATTATTGAAT+CGG | - | chr5_3:11766945-11766964 | Msa0798820:CDS | 40.0% | |
| GTGTCAAGCAAGTAGGTAAA+AGG | + | chr5_3:11767195-11767214 | None:intergenic | 40.0% | |
| ! | AATGAATTTGCTCACCATGC+AGG | - | chr5_3:11767215-11767234 | Msa0798820:CDS | 40.0% |
| CACATGATTCGACCTGAATA+TGG | + | chr5_3:11767347-11767366 | None:intergenic | 40.0% | |
| GCGCAATTTAGTGCCTTTAT+GGG | - | chr5_3:11767368-11767387 | Msa0798820:intron | 40.0% | |
| TGAGAATGGAATGCCCATAA+AGG | + | chr5_3:11767384-11767403 | None:intergenic | 40.0% | |
| TTATGGGCATTCCATTCTCA+TGG | - | chr5_3:11767384-11767403 | Msa0798820:intron | 40.0% | |
| GGACTAACTATAAGCTGGAA+TGG | - | chr5_3:11767476-11767495 | Msa0798820:intron | 40.0% | |
| !! | AAATGCACCGATGTTTTCTG+AGG | - | chr5_3:11767508-11767527 | Msa0798820:intron | 40.0% |
| TCAGCTGAAGATCCTTTGAT+AGG | + | chr5_3:11767668-11767687 | None:intergenic | 40.0% | |
| TATCAAAGGATCTTCAGCTG+AGG | - | chr5_3:11767667-11767686 | Msa0798820:intron | 40.0% | |
| TGAAAGAAGACCCTTTGACA+AGG | + | chr5_3:11767699-11767718 | None:intergenic | 40.0% | |
| CACAAGCAACACAATCCAAA+TGG | + | chr5_3:11767734-11767753 | None:intergenic | 40.0% | |
| AATGCAAACCCTGAAAGAAG+AGG | - | chr5_3:11767802-11767821 | Msa0798820:intron | 40.0% | |
| CATCATCTCCTCTTCTTTCA+GGG | + | chr5_3:11767813-11767832 | None:intergenic | 40.0% | |
| ACATCATCTCCTCTTCTTTC+AGG | + | chr5_3:11767814-11767833 | None:intergenic | 40.0% | |
| ! | AGAAGAGTAGTTTGCGTGAA+CGG | - | chr5_3:11767848-11767867 | Msa0798820:intron | 40.0% |
| CACAAGCAGACAGAGTTAAA+AGG | + | chr5_3:11767877-11767896 | None:intergenic | 40.0% | |
| GAGTATATGGTTCCATCATG+AGG | - | chr5_3:11767975-11767994 | Msa0798820:intron | 40.0% | |
| AGATGGCAAATGTAGCCAAA+CGG | - | chr5_3:11768042-11768061 | Msa0798820:intron | 40.0% | |
| AATTTACACGACCTCTCCTA+AGG | - | chr5_3:11768101-11768120 | Msa0798820:CDS | 40.0% | |
| CTTCATGGTTTGAGAATGCG+TGG | + | chr5_3:11764509-11764528 | None:intergenic | 45.0% | |
| AGCCGAGTTTGACGAAATGA+CGG | - | chr5_3:11764789-11764808 | Msa0798820:exon | 45.0% | |
| TACTCCGTGTAACTGATGCT+TGG | + | chr5_3:11764973-11764992 | None:intergenic | 45.0% | |
| TTGCTATGGGAACATTCTGC+TGG | - | chr5_3:11765525-11765544 | Msa0798820:intron | 45.0% | |
| TGCTATGGGAACATTCTGCT+GGG | - | chr5_3:11765526-11765545 | Msa0798820:intron | 45.0% | |
| GCTAACAGCAGCTGTAGATA+AGG | + | chr5_3:11765552-11765571 | None:intergenic | 45.0% | |
| ACGCAACCTGCTTAAAATCG+TGG | + | chr5_3:11765580-11765599 | None:intergenic | 45.0% | |
| GCAATGAATGACTGCAATGC+TGG | + | chr5_3:11765644-11765663 | None:intergenic | 45.0% | |
| GGAGTTAGAGGAGTTGGATT+TGG | - | chr5_3:11765680-11765699 | Msa0798820:intron | 45.0% | |
| ATTGGTACTGTAGGCGGAAT+TGG | - | chr5_3:11765716-11765735 | Msa0798820:intron | 45.0% | |
| !! | TGGTGTTATGGCTACTGTCA+TGG | - | chr5_3:11765742-11765761 | Msa0798820:intron | 45.0% |
| !! | TCATGGCTGGTCAGAAGTTT+TGG | - | chr5_3:11765759-11765778 | Msa0798820:intron | 45.0% |
| !! | CATGGCTGGTCAGAAGTTTT+GGG | - | chr5_3:11765760-11765779 | Msa0798820:intron | 45.0% |
| !! | ATGGCTGGTCAGAAGTTTTG+GGG | - | chr5_3:11765761-11765780 | Msa0798820:intron | 45.0% |
| !! | GCTGCTGACTCAATGAATGT+AGG | + | chr5_3:11765997-11766016 | None:intergenic | 45.0% |
| GGAACCGGGATCAGAAATTT+AGG | - | chr5_3:11766097-11766116 | Msa0798820:CDS | 45.0% | |
| ! | AATCAGCTTTGTGTGTCAGC+AGG | - | chr5_3:11766382-11766401 | Msa0798820:intron | 45.0% |
| ! | ATCAGCTTTGTGTGTCAGCA+GGG | - | chr5_3:11766383-11766402 | Msa0798820:intron | 45.0% |
| CTAGTGTGACATCAACTTGG+AGG | - | chr5_3:11766430-11766449 | Msa0798820:intron | 45.0% | |
| !! | CATCAACTTGGAGGTACTCT+TGG | - | chr5_3:11766439-11766458 | Msa0798820:intron | 45.0% |
| GCATTATTGGGTCACTACCA+TGG | - | chr5_3:11766517-11766536 | Msa0798820:intron | 45.0% | |
| CCACATTGTGAAGAAGACCA+TGG | + | chr5_3:11766547-11766566 | None:intergenic | 45.0% | |
| CCATGGTCTTCTTCACAATG+TGG | - | chr5_3:11766544-11766563 | Msa0798820:intron | 45.0% | |
| TGGCACTCTCAAATCTCATG+TGG | + | chr5_3:11766716-11766735 | None:intergenic | 45.0% | |
| ! | CCCAAGTTGGATGCTATTGT+TGG | + | chr5_3:11766752-11766771 | None:intergenic | 45.0% |
| ATCCAATTAGCGAGATCTCC+AGG | - | chr5_3:11766910-11766929 | Msa0798820:CDS | 45.0% | |
| AACCTGGAGATCTCGCTAAT+TGG | + | chr5_3:11766915-11766934 | None:intergenic | 45.0% | |
| TTAGCGAGATCTCCAGGTTA+TGG | - | chr5_3:11766916-11766935 | Msa0798820:CDS | 45.0% | |
| TCTCCAGGTTATGGCTCAAT+CGG | - | chr5_3:11766925-11766944 | Msa0798820:CDS | 45.0% | |
| !! | AAATCGGCTAGTTTGCTGGT+TGG | + | chr5_3:11767030-11767049 | None:intergenic | 45.0% |
| CAGTCGGTTAAGCCAGAAAT+CGG | + | chr5_3:11767046-11767065 | None:intergenic | 45.0% | |
| TGTGCAATGGGATCCTTGAT+AGG | - | chr5_3:11767287-11767306 | Msa0798820:CDS | 45.0% | |
| CAATGGGATCCTTGATAGGA+GGG | - | chr5_3:11767291-11767310 | Msa0798820:CDS | 45.0% | |
| AGCTATTGACCCTCCTATCA+AGG | + | chr5_3:11767303-11767322 | None:intergenic | 45.0% | |
| CGCGCAATTTAGTGCCTTTA+TGG | - | chr5_3:11767367-11767386 | Msa0798820:intron | 45.0% | |
| GGGACTACCTCAGAAAACAT+CGG | + | chr5_3:11767518-11767537 | None:intergenic | 45.0% | |
| AGGTAGTCCCAATCAAACAC+AGG | - | chr5_3:11767528-11767547 | Msa0798820:intron | 45.0% | |
| TCTGCAAGAATGCCAACCAA+AGG | + | chr5_3:11767611-11767630 | None:intergenic | 45.0% | |
| ACTCTGTCTGCTTGTGACTT+CGG | - | chr5_3:11767881-11767900 | Msa0798820:intron | 45.0% | |
| CTTGTGACTTCGGTCCTAAA+TGG | - | chr5_3:11767891-11767910 | Msa0798820:intron | 45.0% | |
| TATGGTTCCATCATGAGGTG+AGG | - | chr5_3:11767980-11767999 | Msa0798820:intron | 45.0% | |
| TTATCAGCCTCACCTCATGA+TGG | + | chr5_3:11767990-11768009 | None:intergenic | 45.0% | |
| GCAAATGTAGCCAAACGGAT+CGG | - | chr5_3:11768047-11768066 | Msa0798820:intron | 45.0% | |
| TAATTGCGTGAGATCCGCGA+AGG | - | chr5_3:11764344-11764363 | Msa0798820:three_prime_UTR | 50.0% | |
| GGTTTGAGAATGCGTGGAAG+TGG | + | chr5_3:11764503-11764522 | None:intergenic | 50.0% | |
| AATGCAGGCCCGTCTGATTT+AGG | - | chr5_3:11765413-11765432 | Msa0798820:intron | 50.0% | |
| GGACTATCATCACCACTAGC+TGG | - | chr5_3:11765467-11765486 | Msa0798820:intron | 50.0% | |
| ! | CGCTTGCCACGATTTTAAGC+AGG | - | chr5_3:11765571-11765590 | Msa0798820:intron | 50.0% |
| AGGGAAGGAGTTAGAGGAGT+TGG | - | chr5_3:11765674-11765693 | Msa0798820:intron | 50.0% | |
| ! | CGGAATTGGAGGTGGTGTTA+TGG | - | chr5_3:11765730-11765749 | Msa0798820:intron | 50.0% |
| GTTATGGCTACTGTCATGGC+TGG | - | chr5_3:11765746-11765765 | Msa0798820:intron | 50.0% | |
| AAGAAGACCATGGCAGTCCA+TGG | + | chr5_3:11766537-11766556 | None:intergenic | 50.0% | |
| !! | TCTTGCAATAACGGTGCTGC+TGG | + | chr5_3:11766652-11766671 | None:intergenic | 50.0% |
| CTCCAGGTTATGGCTCAATC+GGG | - | chr5_3:11766926-11766945 | Msa0798820:CDS | 50.0% | |
| !! | CCAGAAATCGGCTAGTTTGC+TGG | + | chr5_3:11767034-11767053 | None:intergenic | 50.0% |
| ! | CCAGCAAACTAGCCGATTTC+TGG | - | chr5_3:11767031-11767050 | Msa0798820:CDS | 50.0% |
| ! | TCTGGCTTAACCGACTGAAC+CGG | - | chr5_3:11767049-11767068 | Msa0798820:CDS | 50.0% |
| AAAAATCGGACCGAACCAGC+CGG | + | chr5_3:11767071-11767090 | None:intergenic | 50.0% | |
| GCAATGGGATCCTTGATAGG+AGG | - | chr5_3:11767290-11767309 | Msa0798820:CDS | 50.0% | |
| CTCTTCTGTTGCAGCACCTT+TGG | - | chr5_3:11767592-11767611 | Msa0798820:intron | 50.0% | |
| TCTGTTGCAGCACCTTTGGT+TGG | - | chr5_3:11767596-11767615 | Msa0798820:intron | 50.0% | |
| TGAGGCTCTTGCCTTGTCAA+AGG | - | chr5_3:11767685-11767704 | Msa0798820:intron | 50.0% | |
| GAGGCTCTTGCCTTGTCAAA+GGG | - | chr5_3:11767686-11767705 | Msa0798820:intron | 50.0% | |
| ! | ATCCGCGAAGGACGCTGATT+TGG | - | chr5_3:11764356-11764375 | Msa0798820:three_prime_UTR | 55.0% |
| CACCAAATCAGCGTCCTTCG+CGG | + | chr5_3:11764361-11764380 | None:intergenic | 55.0% | |
| CACGCTCCATTATAGCAGCC+AGG | + | chr5_3:11765343-11765362 | None:intergenic | 55.0% | |
| GGTACTGTAGGCGGAATTGG+AGG | - | chr5_3:11765719-11765738 | Msa0798820:intron | 55.0% | |
| ACTGTAGGCGGAATTGGAGG+TGG | - | chr5_3:11765722-11765741 | Msa0798820:intron | 55.0% | |
| GTAGGAGATCGCTCTCTACG+AGG | + | chr5_3:11765979-11765998 | None:intergenic | 55.0% | |
| ! | GTCACTACCATGGACTGCCA+TGG | - | chr5_3:11766527-11766546 | Msa0798820:intron | 55.0% |
| GACCCGATTGAGCCATAACC+TGG | + | chr5_3:11766931-11766950 | None:intergenic | 55.0% | |
| !! | CGCGAAGGACGCTGATTTGG+TGG | - | chr5_3:11764359-11764378 | Msa0798820:three_prime_UTR | 60.0% |
| GCTTAACCGACTGAACCGGC+TGG | - | chr5_3:11767053-11767072 | Msa0798820:CDS | 60.0% | |
| ! | ACCGACTGAACCGGCTGGTT+CGG | - | chr5_3:11767058-11767077 | Msa0798820:CDS | 60.0% |
| ! | ACCGAACCAGCCGGTTCAGT+CGG | + | chr5_3:11767062-11767081 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 11764286 | 11768346 | 11764286 | ID=Msa0798820;Name=Msa0798820 |
| chr5_3 | mRNA | 11764286 | 11768346 | 11764286 | ID=Msa0798820-mRNA-1;Parent=Msa0798820;Name=Msa0798820-mRNA-1;_AED=0.03;_eAED=0.03;_QI=144|1|1|1|1|1|4|511|501 |
| chr5_3 | exon | 11764286 | 11765395 | 11764286 | ID=Msa0798820-mRNA-1:exon:4842;Parent=Msa0798820-mRNA-1 |
| chr5_3 | exon | 11766053 | 11766228 | 11766053 | ID=Msa0798820-mRNA-1:exon:4841;Parent=Msa0798820-mRNA-1 |
| chr5_3 | exon | 11766714 | 11767340 | 11766714 | ID=Msa0798820-mRNA-1:exon:4840;Parent=Msa0798820-mRNA-1 |
| chr5_3 | exon | 11768099 | 11768346 | 11768099 | ID=Msa0798820-mRNA-1:exon:4839;Parent=Msa0798820-mRNA-1 |
| chr5_3 | five_prime_UTR | 11768203 | 11768346 | 11768203 | ID=Msa0798820-mRNA-1:five_prime_utr;Parent=Msa0798820-mRNA-1 |
| chr5_3 | CDS | 11768099 | 11768202 | 11768099 | ID=Msa0798820-mRNA-1:cds;Parent=Msa0798820-mRNA-1 |
| chr5_3 | CDS | 11766714 | 11767340 | 11766714 | ID=Msa0798820-mRNA-1:cds;Parent=Msa0798820-mRNA-1 |
| chr5_3 | CDS | 11766053 | 11766228 | 11766053 | ID=Msa0798820-mRNA-1:cds;Parent=Msa0798820-mRNA-1 |
| chr5_3 | CDS | 11764797 | 11765395 | 11764797 | ID=Msa0798820-mRNA-1:cds;Parent=Msa0798820-mRNA-1 |
| chr5_3 | three_prime_UTR | 11764286 | 11764796 | 11764286 | ID=Msa0798820-mRNA-1:three_prime_utr;Parent=Msa0798820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
