Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766600 | XP_003613823.1 | 68.504 | 381 | 59 | 7 | 1 | 338 | 1 | 363 | 1.69e-150 | 449 |
| Msa0766600 | XP_003613823.1 | 70.538 | 353 | 33 | 5 | 340 | 623 | 1 | 351 | 1.37e-140 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766600 | sp|Q8W1E3|CDF1_ARATH | 37.868 | 272 | 128 | 9 | 106 | 340 | 25 | 292 | 2.89e-33 | 132 |
| Msa0766600 | sp|Q8W1E3|CDF1_ARATH | 39.044 | 251 | 91 | 7 | 426 | 615 | 19 | 268 | 5.14e-31 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766600 | G7KGL5 | 68.504 | 381 | 59 | 7 | 1 | 338 | 1 | 363 | 8.05e-151 | 449 |
| Msa0766600 | G7KGL5 | 70.538 | 353 | 33 | 5 | 340 | 623 | 1 | 351 | 6.56e-141 | 424 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0766600 | TF | C2C2-Dof |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0725790 | Msa0766600 | 0.915572 | 5.016630e-85 | -8.615850e-47 |
| Msa0766600 | Msa0792480 | 0.809663 | 1.693103e-50 | -8.615850e-47 |
| Msa0766600 | Msa0845850 | 0.914778 | 1.285719e-84 | -8.615850e-47 |
| Msa0766600 | Msa1130820 | 0.810311 | 1.227506e-50 | -8.615850e-47 |
| Msa0766600 | Msa1406670 | 0.811252 | 7.681959e-51 | -8.615850e-47 |
| Msa0766600 | Msa1448870 | 0.810083 | 1.374592e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766600 | MtrunA17_Chr5g0417551 | 68.504 | 381 | 59 | 7 | 1 | 338 | 1 | 363 | 1.55e-154 | 449 |
| Msa0766600 | MtrunA17_Chr5g0417551 | 70.538 | 353 | 33 | 5 | 340 | 623 | 1 | 351 | 1.26e-144 | 424 |
| Msa0766600 | MtrunA17_Chr5g0417561 | 65.526 | 380 | 70 | 7 | 1 | 341 | 1 | 358 | 2.06e-148 | 433 |
| Msa0766600 | MtrunA17_Chr5g0417561 | 71.470 | 347 | 34 | 5 | 340 | 624 | 1 | 344 | 1.67e-145 | 426 |
| Msa0766600 | MtrunA17_Chr5g0417601 | 53.197 | 391 | 118 | 13 | 1 | 341 | 1 | 376 | 5.50e-92 | 289 |
| Msa0766600 | MtrunA17_Chr5g0417601 | 50.674 | 371 | 89 | 13 | 340 | 624 | 1 | 363 | 2.49e-74 | 243 |
| Msa0766600 | MtrunA17_Chr5g0417571 | 53.743 | 374 | 81 | 16 | 1 | 340 | 1 | 316 | 1.41e-77 | 249 |
| Msa0766600 | MtrunA17_Chr5g0417571 | 53.618 | 304 | 53 | 9 | 340 | 560 | 1 | 299 | 5.87e-60 | 203 |
| Msa0766600 | MtrunA17_Chr4g0042481 | 39.676 | 247 | 83 | 9 | 4 | 209 | 6 | 227 | 9.31e-30 | 122 |
| Msa0766600 | MtrunA17_Chr4g0042481 | 39.247 | 186 | 66 | 5 | 343 | 497 | 6 | 175 | 3.61e-22 | 100 |
| Msa0766600 | MtrunA17_Chr4g0042481 | 52.083 | 96 | 25 | 4 | 542 | 619 | 350 | 442 | 1.43e-14 | 76.6 |
| Msa0766600 | MtrunA17_Chr4g0042481 | 51.190 | 84 | 30 | 3 | 265 | 341 | 381 | 460 | 1.87e-12 | 69.7 |
| Msa0766600 | MtrunA17_Chr7g0217581 | 35.341 | 249 | 104 | 8 | 2 | 208 | 101 | 334 | 6.27e-26 | 112 |
| Msa0766600 | MtrunA17_Chr7g0217581 | 33.216 | 283 | 124 | 11 | 294 | 528 | 65 | 330 | 6.09e-22 | 100 |
| Msa0766600 | MtrunA17_Chr6g0453321 | 43.357 | 143 | 53 | 5 | 79 | 198 | 76 | 213 | 2.64e-21 | 97.8 |
| Msa0766600 | MtrunA17_Chr6g0453321 | 42.336 | 137 | 47 | 6 | 409 | 522 | 86 | 213 | 3.22e-18 | 88.2 |
| Msa0766600 | MtrunA17_Chr8g0355261 | 31.818 | 198 | 87 | 6 | 343 | 516 | 12 | 185 | 5.96e-18 | 87.0 |
| Msa0766600 | MtrunA17_Chr8g0355261 | 36.975 | 119 | 56 | 4 | 77 | 177 | 58 | 175 | 1.15e-14 | 76.6 |
| Msa0766600 | MtrunA17_Chr6g0460731 | 46.465 | 99 | 32 | 3 | 96 | 173 | 51 | 149 | 7.42e-18 | 85.9 |
| Msa0766600 | MtrunA17_Chr6g0460731 | 43.564 | 101 | 36 | 3 | 418 | 497 | 49 | 149 | 1.24e-16 | 82.0 |
| Msa0766600 | MtrunA17_Chr3g0092111 | 43.519 | 108 | 37 | 3 | 101 | 188 | 97 | 200 | 3.07e-16 | 81.6 |
| Msa0766600 | MtrunA17_Chr3g0092111 | 38.636 | 132 | 42 | 4 | 428 | 522 | 107 | 236 | 1.50e-15 | 79.7 |
| Msa0766600 | MtrunA17_Chr7g0254161 | 42.342 | 111 | 27 | 3 | 453 | 526 | 95 | 205 | 6.42e-16 | 80.5 |
| Msa0766600 | MtrunA17_Chr7g0254161 | 41.441 | 111 | 28 | 3 | 129 | 202 | 95 | 205 | 4.80e-15 | 77.8 |
| Msa0766600 | MtrunA17_Chr2g0283811 | 53.846 | 65 | 15 | 1 | 124 | 173 | 36 | 100 | 6.80e-16 | 75.5 |
| Msa0766600 | MtrunA17_Chr2g0283811 | 52.308 | 65 | 16 | 1 | 448 | 497 | 36 | 100 | 2.72e-15 | 73.9 |
| Msa0766600 | MtrunA17_Chr6g0460721 | 42.708 | 96 | 34 | 3 | 99 | 173 | 47 | 142 | 9.88e-15 | 75.9 |
| Msa0766600 | MtrunA17_Chr6g0460721 | 38.614 | 101 | 41 | 3 | 418 | 497 | 42 | 142 | 2.58e-14 | 74.7 |
| Msa0766600 | MtrunA17_Chr4g0010151 | 37.179 | 78 | 34 | 1 | 435 | 497 | 58 | 135 | 9.40e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766600 | AT5G62430.1 | 37.868 | 272 | 128 | 9 | 106 | 340 | 25 | 292 | 2.94e-34 | 132 |
| Msa0766600 | AT5G62430.1 | 39.044 | 251 | 91 | 7 | 426 | 615 | 19 | 268 | 5.22e-32 | 126 |
| Msa0766600 | AT1G69570.1 | 29.674 | 337 | 148 | 15 | 82 | 340 | 66 | 391 | 9.62e-20 | 92.4 |
| Msa0766600 | AT1G69570.1 | 33.125 | 160 | 68 | 4 | 422 | 545 | 81 | 237 | 1.70e-16 | 82.4 |
| Msa0766600 | AT5G39660.3 | 34.426 | 183 | 66 | 7 | 93 | 234 | 99 | 268 | 7.02e-18 | 87.0 |
| Msa0766600 | AT5G39660.3 | 38.889 | 162 | 56 | 8 | 413 | 535 | 87 | 244 | 1.96e-17 | 85.9 |
| Msa0766600 | AT5G39660.1 | 34.426 | 183 | 66 | 7 | 93 | 234 | 99 | 268 | 7.02e-18 | 87.0 |
| Msa0766600 | AT5G39660.1 | 38.889 | 162 | 56 | 8 | 413 | 535 | 87 | 244 | 1.96e-17 | 85.9 |
| Msa0766600 | AT5G39660.2 | 34.426 | 183 | 66 | 7 | 93 | 234 | 99 | 268 | 7.02e-18 | 87.0 |
| Msa0766600 | AT5G39660.2 | 38.889 | 162 | 56 | 8 | 413 | 535 | 87 | 244 | 1.96e-17 | 85.9 |
| Msa0766600 | AT1G26790.1 | 26.190 | 294 | 129 | 9 | 116 | 340 | 92 | 366 | 1.26e-17 | 85.5 |
| Msa0766600 | AT1G26790.1 | 47.945 | 73 | 23 | 1 | 440 | 497 | 92 | 164 | 1.96e-15 | 79.0 |
| Msa0766600 | AT1G29160.1 | 54.545 | 66 | 15 | 1 | 123 | 173 | 50 | 115 | 1.91e-17 | 80.9 |
| Msa0766600 | AT1G29160.1 | 54.545 | 66 | 15 | 1 | 447 | 497 | 50 | 115 | 2.75e-17 | 80.5 |
| Msa0766600 | AT3G47500.1 | 48.571 | 105 | 28 | 3 | 416 | 500 | 68 | 166 | 2.31e-17 | 85.5 |
| Msa0766600 | AT3G47500.1 | 44.545 | 110 | 31 | 3 | 94 | 188 | 79 | 173 | 2.57e-17 | 85.5 |
| Msa0766600 | AT2G34140.1 | 44.086 | 93 | 32 | 3 | 101 | 173 | 19 | 111 | 4.31e-16 | 77.0 |
| Msa0766600 | AT2G34140.1 | 51.515 | 66 | 17 | 1 | 447 | 497 | 46 | 111 | 6.58e-16 | 76.3 |
| Msa0766600 | AT3G55370.1 | 29.851 | 134 | 68 | 2 | 57 | 175 | 9 | 131 | 9.28e-13 | 70.1 |
| Msa0766600 | AT3G55370.1 | 37.234 | 94 | 43 | 2 | 421 | 499 | 39 | 131 | 2.28e-11 | 65.9 |
| Msa0766600 | AT3G55370.2 | 29.851 | 134 | 68 | 2 | 57 | 175 | 9 | 131 | 1.39e-12 | 70.1 |
| Msa0766600 | AT3G55370.2 | 37.234 | 94 | 43 | 2 | 421 | 499 | 39 | 131 | 2.65e-11 | 66.2 |
| Msa0766600 | AT3G55370.3 | 36.957 | 92 | 42 | 2 | 421 | 497 | 84 | 174 | 2.16e-11 | 66.6 |
| Msa0766600 | AT2G28810.2 | 32.353 | 102 | 54 | 1 | 409 | 495 | 27 | 128 | 6.77e-11 | 64.7 |
| Msa0766600 | AT2G28810.1 | 32.353 | 102 | 54 | 1 | 409 | 495 | 44 | 145 | 7.64e-11 | 64.7 |
Find 116 sgRNAs with CRISPR-Local
Find 433 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAATGGATTTGCATCTA+TGG | 0.224783 | 5_2:-28498861 | Msa0766600:CDS |
| TTTCAATGGATTTGCATCTA+TGG | 0.227266 | 5_2:-28493961 | Msa0766600:CDS |
| GTTCCAAGTAAACCTACTTT+AGG | 0.229772 | 5_2:-28494134 | Msa0766600:CDS |
| TCTTCAATTCTTAATTTCTT+AGG | 0.243331 | 5_2:+28494047 | None:intergenic |
| TTGTTGTTGTTTCTTTGTTC+TGG | 0.258792 | 5_2:+28500340 | None:intergenic |
| AAACCCTTTGCATCTTCATT+AGG | 0.263138 | 5_2:+28498923 | None:intergenic |
| TCTTCAATTCTCAATTTCTT+AGG | 0.264262 | 5_2:+28498947 | None:intergenic |
| GAACCCTTTGCAGCTTCATT+AGG | 0.275268 | 5_2:+28494023 | None:intergenic |
| GCAAAAGCTGCCAGAGATAT+TGG | 0.290195 | 5_2:-28499396 | Msa0766600:CDS |
| ACCACCATAGTATGCTATAT+TGG | 0.313954 | 5_2:+28499105 | None:intergenic |
| GGGAGTGTTTAAATCCTCTT+TGG | 0.317886 | 5_2:+28499627 | None:intergenic |
| AACCCTTTGCATCTTCATTA+GGG | 0.318049 | 5_2:+28498924 | None:intergenic |
| AAGCTGCAAAGGGTTCTAAT+TGG | 0.333760 | 5_2:-28494016 | Msa0766600:CDS |
| ACTTTGTTCATCAACTTTAG+TGG | 0.339956 | 5_2:+28494634 | None:intergenic |
| ATGAGTACTGTCTTGAACTT+TGG | 0.343501 | 5_2:-28494377 | Msa0766600:CDS |
| TTCCAAGTAAACCTACTTTA+GGG | 0.351236 | 5_2:-28494133 | Msa0766600:CDS |
| AACCCTTTGCAGCTTCATTA+GGG | 0.351302 | 5_2:+28494024 | None:intergenic |
| CTTGTCAAGAAAATCAATAT+TGG | 0.352841 | 5_2:-28499223 | Msa0766600:CDS |
| TGCCAGAGATATTGGACTTC+CGG | 0.368326 | 5_2:-28499388 | Msa0766600:CDS |
| ATGAGTAGTGTCTTGACCTT+TGG | 0.369998 | 5_2:-28499277 | Msa0766600:CDS |
| TTCCCTAAAGTAGGTTTACT+TGG | 0.378626 | 5_2:+28494131 | None:intergenic |
| AGTGAAGATGAAGACATAAT+AGG | 0.382456 | 5_2:+28499244 | None:intergenic |
| AGTGAAGTTGAAGACATAAT+AGG | 0.386239 | 5_2:+28494344 | None:intergenic |
| ACATGATTCAAAGAGATATA+AGG | 0.401349 | 5_2:-28500118 | Msa0766600:intron |
| TGTCAGAGATATTGGACTTC+CGG | 0.405497 | 5_2:-28494488 | Msa0766600:CDS |
| CAACCCAATATAGCATACTA+TGG | 0.408858 | 5_2:-28499109 | Msa0766600:CDS |
| CCACCATAGTATGCTATATT+GGG | 0.415830 | 5_2:+28499106 | None:intergenic |
| GAATTCTTCAAAGAGATATA+AGG | 0.418199 | 5_2:-28495325 | Msa0766600:intron |
| ATCAATTTCAGGAACAATCA+AGG | 0.419402 | 5_2:-28499696 | Msa0766600:intron |
| CCTTGATAAAGCTGCAGGAT+TGG | 0.440224 | 5_2:+28498790 | None:intergenic |
| TTTGAAGAATTCACTTCAAG+TGG | 0.441472 | 5_2:+28495336 | None:intergenic |
| TTCAATGGATTTGCATCTAT+GGG | 0.443267 | 5_2:-28498860 | Msa0766600:CDS |
| TTCAATGGATTTGCATCTAT+GGG | 0.443602 | 5_2:-28493960 | Msa0766600:CDS |
| TTGCATCTATGGGTGGTGAT+AGG | 0.444216 | 5_2:-28498850 | Msa0766600:CDS |
| ACACAGGATAACACATTGTT+GGG | 0.445576 | 5_2:+28499137 | None:intergenic |
| TAACACATTGTTGGGTTCCA+TGG | 0.452271 | 5_2:+28499145 | None:intergenic |
| GACACAGGATAACACATTGT+TGG | 0.452547 | 5_2:+28499136 | None:intergenic |
| GAGGTGGGTTCTTTCCATGA+TGG | 0.456203 | 5_2:+28494752 | None:intergenic |
| CTTGAATGTTTCCCTAAAGT+AGG | 0.465584 | 5_2:+28494122 | None:intergenic |
| GTTGAATCATTAGTCATCTC+TGG | 0.466384 | 5_2:+28500297 | None:intergenic |
| CTCCGGAAGTCCAATATCTC+TGG | 0.468706 | 5_2:+28499386 | None:intergenic |
| ATCAATTTCAGAAACCATCA+TGG | 0.469521 | 5_2:-28494766 | Msa0766600:intron |
| CTCAATAAGGCTTGAAGATG+TGG | 0.477034 | 5_2:+28499603 | None:intergenic |
| CATACTTCTCGTGGTTCCTC+CGG | 0.479008 | 5_2:+28499369 | None:intergenic |
| GGATCAGAAGGTGAAACATC+TGG | 0.482490 | 5_2:-28494302 | Msa0766600:intron |
| GAAGTTTCTGTTTCTGATGA+GGG | 0.487694 | 5_2:+28499568 | None:intergenic |
| TTTGTTTGGAGCTTTGTCCT+GGG | 0.494952 | 5_2:+28494604 | None:intergenic |
| AAAATGAATGTTGGATCAGA+AGG | 0.495845 | 5_2:-28494314 | Msa0766600:CDS |
| GTGTTTAAATCCTCTGTGGT+TGG | 0.498787 | 5_2:+28494701 | None:intergenic |
| TTTGAAGAATTCACTTCAAG+TGG | 0.499476 | 5_2:+28500144 | None:intergenic |
| GTGGTTGTTTAGTCCCATCA+TGG | 0.499829 | 5_2:-28499087 | Msa0766600:CDS |
| CGTTTCTGTTTCTGATGTGG+TGG | 0.503552 | 5_2:+28494676 | None:intergenic |
| TATATCTCTTTGAATCATGT+TGG | 0.511854 | 5_2:+28500121 | None:intergenic |
| CATACTTCTAGTGGTTCCTC+CGG | 0.515524 | 5_2:+28494469 | None:intergenic |
| AGAAGTTTCTGTTTCTGATG+AGG | 0.515525 | 5_2:+28499567 | None:intergenic |
| CCAATCCTGCAGCTTTATCA+AGG | 0.521791 | 5_2:-28498790 | Msa0766600:intron |
| CTCGCCAAGAAAATGAATGT+TGG | 0.525721 | 5_2:-28494323 | Msa0766600:CDS |
| TTCATAATCAAGTACTGAGG+TGG | 0.527250 | 5_2:+28494736 | None:intergenic |
| TTGACAATTATGTGAGGCAT+CGG | 0.528875 | 5_2:+28494400 | None:intergenic |
| AGAAGTATGCTTGTAGGTGC+AGG | 0.528984 | 5_2:-28499355 | Msa0766600:CDS |
| AGAAGTATGCTTGTAGGTGC+AGG | 0.531689 | 5_2:-28494455 | Msa0766600:CDS |
| TTAGGGAAACATTCAAGAGA+TGG | 0.534355 | 5_2:-28494116 | Msa0766600:CDS |
| GACCCTAATGAAGCTGCAAA+GGG | 0.538987 | 5_2:-28494026 | Msa0766600:CDS |
| ACCACTAGAAGTATGCTTGT+AGG | 0.541265 | 5_2:-28494461 | Msa0766600:CDS |
| TAGGTTGTACGCTCCATGAT+GGG | 0.544678 | 5_2:+28499074 | None:intergenic |
| CACCACATCAGAAACAGAAA+CGG | 0.551827 | 5_2:-28494675 | Msa0766600:CDS |
| TGAGACCTTGATAAAGCTGC+AGG | 0.554542 | 5_2:+28498785 | None:intergenic |
| ATCGTAATCAAGTACTGAGG+TGG | 0.554962 | 5_2:+28499666 | None:intergenic |
| CATAGTATGCTATATTGGGT+TGG | 0.557895 | 5_2:+28499110 | None:intergenic |
| CTAGGAAGCAAGAGTGGTGG+AGG | 0.558467 | 5_2:-28493987 | Msa0766600:CDS |
| TTCCGTTTCTGTTTCTGATG+TGG | 0.567810 | 5_2:+28494673 | None:intergenic |
| AGACCCTAATGAAGCTGCAA+AGG | 0.568759 | 5_2:-28494027 | Msa0766600:CDS |
| GTTTCTGTTTCTGATGTGGT+GGG | 0.569724 | 5_2:+28494677 | None:intergenic |
| TCATAATCAAGTACTGAGGT+GGG | 0.572134 | 5_2:+28494737 | None:intergenic |
| GACCCTAATGAAGATGCAAA+GGG | 0.573223 | 5_2:-28498926 | Msa0766600:CDS |
| CTAGGAAACAAGAGTGGTGG+AGG | 0.573390 | 5_2:-28498887 | Msa0766600:CDS |
| TTTGTTAGGAGCTTTGTCCT+GGG | 0.573883 | 5_2:+28499504 | None:intergenic |
| ACCACGAGAAGTATGCTTGT+AGG | 0.578460 | 5_2:-28499361 | Msa0766600:CDS |
| GGTTCTAATTGGTTAACACT+AGG | 0.578922 | 5_2:-28494005 | Msa0766600:CDS |
| GAGAAATCTTCATGAGCAAG+AGG | 0.580785 | 5_2:+28495396 | None:intergenic |
| GAGAAATCTTCATGAGCAAG+AGG | 0.580785 | 5_2:+28500204 | None:intergenic |
| ATAGGTTGTACGCTCCATGA+TGG | 0.581466 | 5_2:+28499073 | None:intergenic |
| AATAAGGCTTGAAGATGTGG+TGG | 0.584261 | 5_2:+28499606 | None:intergenic |
| AAACTCAGAGGAACAATCAT+CGG | 0.585405 | 5_2:+28495425 | None:intergenic |
| AGACCCTAATGAAGATGCAA+AGG | 0.590368 | 5_2:-28498927 | Msa0766600:CDS |
| ACACAAGATTGAGTTGCGAT+AGG | 0.596525 | 5_2:+28499055 | None:intergenic |
| AATAGGAGAATCTGATCCAA+AGG | 0.598047 | 5_2:+28499261 | None:intergenic |
| TTGACGATTATGTGAGACAT+CGG | 0.603312 | 5_2:+28499300 | None:intergenic |
| ATTGGCTTTCAATACTGATG+AGG | 0.608635 | 5_2:+28498808 | None:intergenic |
| TCGTAATCAAGTACTGAGGT+GGG | 0.612458 | 5_2:+28499667 | None:intergenic |
| TGAACAAAGTGATATGTCCC+AGG | 0.620522 | 5_2:-28494621 | Msa0766600:CDS |
| TGAACAAAGTGATATGTCCC+AGG | 0.620522 | 5_2:-28499521 | Msa0766600:CDS |
| ATAAGGCTTGAAGATGTGGT+GGG | 0.622284 | 5_2:+28499607 | None:intergenic |
| AGCCTCAAAACAAACCAAAG+AGG | 0.625789 | 5_2:-28499641 | Msa0766600:CDS |
| AATGGATTTGCATCTATGGG+TGG | 0.631829 | 5_2:-28498857 | Msa0766600:CDS |
| ACCTACAAGCATACTTCTAG+TGG | 0.641003 | 5_2:+28494460 | None:intergenic |
| ACCTACAAGCATACTTCTCG+TGG | 0.650658 | 5_2:+28499360 | None:intergenic |
| CCCAATATAGCATACTATGG+TGG | 0.653975 | 5_2:-28499106 | Msa0766600:CDS |
| ACACTAGGAAACAAGAGTGG+TGG | 0.656394 | 5_2:-28498890 | Msa0766600:CDS |
| AAATCTTCATGAGCAAGAGG+AGG | 0.659290 | 5_2:+28495399 | None:intergenic |
| AAATCTTCATGAGCAAGAGG+AGG | 0.659290 | 5_2:+28500207 | None:intergenic |
| ATATTGGGTTGGAATGACAC+AGG | 0.664359 | 5_2:+28499121 | None:intergenic |
| ACACTAGGAAGCAAGAGTGG+TGG | 0.671023 | 5_2:-28493990 | Msa0766600:CDS |
| ACTCATTTGACAATTATGTG+AGG | 0.675408 | 5_2:+28494394 | None:intergenic |
| TTAACACTAGGAAGCAAGAG+TGG | 0.681260 | 5_2:-28493993 | Msa0766600:CDS |
| GGGAGTGTTTAAATCCTCTG+TGG | 0.681758 | 5_2:+28494697 | None:intergenic |
| CAGAGATATTGGACTTCCGG+AGG | 0.688190 | 5_2:-28494485 | Msa0766600:CDS |
| CAGAGATATTGGACTTCCGG+AGG | 0.693631 | 5_2:-28499385 | Msa0766600:CDS |
| TTCTTCATAATCAAGTACTG+AGG | 0.698198 | 5_2:+28494733 | None:intergenic |
| GGGTGGTGATAGGAATCATG+TGG | 0.704890 | 5_2:-28498840 | Msa0766600:CDS |
| AAGAGGAGGAGAAAACTCAG+AGG | 0.721417 | 5_2:+28495413 | None:intergenic |
| AAGAGGAGGAGAAAACTCAG+AGG | 0.721417 | 5_2:+28500221 | None:intergenic |
| GGGTGAAGATAAGAATCATG+TGG | 0.723179 | 5_2:-28493940 | Msa0766600:CDS |
| TTCATCGTAATCAAGTACTG+AGG | 0.724323 | 5_2:+28499663 | None:intergenic |
| AGCCTCAAAACCAACCACAG+AGG | 0.741026 | 5_2:-28494711 | Msa0766600:CDS |
| TTAACACTAGGAAACAAGAG+TGG | 0.767808 | 5_2:-28498893 | Msa0766600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATTACTTATAGTT+AGG | - | chr5_2:28493927-28493946 | Msa0766600:CDS | 10.0% |
| !!! | ATAAAAAATATTTAACTTTG+TGG | - | chr5_2:28499160-28499179 | Msa0766600:intron | 10.0% |
| !!! | TGAAAAATATACAAAGTTTT+TGG | - | chr5_2:28494102-28494121 | Msa0766600:CDS | 15.0% |
| !! | TGATAAACAATAATTAGATT+AGG | + | chr5_2:28494273-28494292 | None:intergenic | 15.0% |
| !! | AATTATTGTTTATCAATTTC+AGG | - | chr5_2:28494278-28494297 | Msa0766600:intron | 15.0% |
| !! | TGAATATTATGTACATATTA+TGG | - | chr5_2:28495527-28495546 | Msa0766600:intron | 15.0% |
| !! | GAATATTATGTACATATTAT+GGG | - | chr5_2:28495528-28495547 | Msa0766600:intron | 15.0% |
| !!! | AAATAAATGTCATAATCTTT+TGG | + | chr5_2:28495678-28495697 | None:intergenic | 15.0% |
| !!! | AAAGTTTATATTTTTCTAAC+AGG | + | chr5_2:28495815-28495834 | None:intergenic | 15.0% |
| !!! | TAAACTTTTCTTAGAAAAAA+TGG | - | chr5_2:28495827-28495846 | Msa0766600:intron | 15.0% |
| !!! | AAACTTTTCTTAGAAAAAAT+GGG | - | chr5_2:28495828-28495847 | Msa0766600:intron | 15.0% |
| !!! | TGAATTTAGAATAAATTCTT+TGG | + | chr5_2:28496113-28496132 | None:intergenic | 15.0% |
| !! | TGAATATATAATTAATTGGT+AGG | - | chr5_2:28497071-28497090 | Msa0766600:intron | 15.0% |
| !! | GAATAAAAAATAATATGAGT+TGG | + | chr5_2:28498997-28499016 | None:intergenic | 15.0% |
| !!! | ACTTTGAGTTTATTTTTTAT+TGG | - | chr5_2:28499068-28499087 | Msa0766600:CDS | 15.0% |
| !! | TGATTAACAATAATTAGATT+AGG | + | chr5_2:28499203-28499222 | None:intergenic | 15.0% |
| !!! | TTTTGGTGATAAAATTCTTA+TGG | - | chr5_2:28494056-28494075 | Msa0766600:CDS | 20.0% |
| !! | ATAGACTTCAAAATATGAAT+TGG | + | chr5_2:28494183-28494202 | None:intergenic | 20.0% |
| !!! | AAGAAGAGATTTTATTCTTA+CGG | + | chr5_2:28494659-28494678 | None:intergenic | 20.0% |
| !! | TGTTGTACATATTATGTAAA+TGG | - | chr5_2:28495455-28495474 | Msa0766600:CDS | 20.0% |
| !!! | CTTTTCTTAGAATAAATATC+AGG | - | chr5_2:28495587-28495606 | Msa0766600:intron | 20.0% |
| !! | ATTATGACATTTATTTCAGT+TGG | - | chr5_2:28495682-28495701 | Msa0766600:intron | 20.0% |
| !! | TTATGACATTTATTTCAGTT+GGG | - | chr5_2:28495683-28495702 | Msa0766600:intron | 20.0% |
| !!! | TGATTTGTAAAAAAACAAAG+AGG | + | chr5_2:28495731-28495750 | None:intergenic | 20.0% |
| !! | AAGTTGTTATGATTAATCTA+AGG | - | chr5_2:28495851-28495870 | Msa0766600:intron | 20.0% |
| !!! | TTATGTTCAAGTTAATTTTG+AGG | + | chr5_2:28496244-28496263 | None:intergenic | 20.0% |
| !! | ATAAAAAAATGTTCACAATC+AGG | - | chr5_2:28496260-28496279 | Msa0766600:intron | 20.0% |
| !! | TATATAATTAATTGGTAGGA+TGG | - | chr5_2:28497075-28497094 | Msa0766600:intron | 20.0% |
| !!! | TTTTTATGATATTTACCTGA+TGG | - | chr5_2:28497161-28497180 | Msa0766600:intron | 20.0% |
| !! | TCATCTGAATGATAAAATAT+TGG | - | chr5_2:28497332-28497351 | Msa0766600:intron | 20.0% |
| !! | AGGAAAATTAAGAGAAATTT+CGG | + | chr5_2:28497381-28497400 | None:intergenic | 20.0% |
| !! | TTTATTTATGGAGTTGTTTA+AGG | + | chr5_2:28497401-28497420 | None:intergenic | 20.0% |
| !! | TAAACAACTCCATAAATAAA+TGG | - | chr5_2:28497401-28497420 | Msa0766600:intron | 20.0% |
| !! | AAAGATCATCCATTTATTTA+TGG | + | chr5_2:28497413-28497432 | None:intergenic | 20.0% |
| !! | AAATTTGATATTATGATTGG+TGG | - | chr5_2:28497642-28497661 | Msa0766600:intron | 20.0% |
| !! | TTGAATAAAATACAGTTCAA+AGG | - | chr5_2:28498018-28498037 | Msa0766600:intron | 20.0% |
| !! | TGAATAAAATACAGTTCAAA+GGG | - | chr5_2:28498019-28498038 | Msa0766600:intron | 20.0% |
| !!! | TTAAAGCATATTTTTAGTTC+AGG | + | chr5_2:28498064-28498083 | None:intergenic | 20.0% |
| !! | TAGCATACAATAAAATGTAA+TGG | - | chr5_2:28498093-28498112 | Msa0766600:intron | 20.0% |
| !! | ACACTATCTTTATATTTATG+TGG | - | chr5_2:28498227-28498246 | Msa0766600:intron | 20.0% |
| !! | CACTATCTTTATATTTATGT+GGG | - | chr5_2:28498228-28498247 | Msa0766600:intron | 20.0% |
| !!! | TTTTATAAAGGTCAAAAAGT+TGG | + | chr5_2:28498338-28498357 | None:intergenic | 20.0% |
| !!! | AACTTTAATTACTTCTAGTT+AGG | - | chr5_2:28498718-28498737 | Msa0766600:intron | 20.0% |
| !!! | TGAAATATATGCAATGTTTT+TGG | - | chr5_2:28498781-28498800 | Msa0766600:intron | 20.0% |
| !! | GATTTATGGTGAATTATTAA+TGG | + | chr5_2:28498896-28498915 | None:intergenic | 20.0% |
| !! | AAAGTTGTACATATGATTTA+TGG | + | chr5_2:28498910-28498929 | None:intergenic | 20.0% |
| !! | TTACAAGTAATTGTGATTAA+AGG | - | chr5_2:28498928-28498947 | Msa0766600:CDS | 20.0% |
| !!! | TATTTTTTATTGGATCTCAT+AGG | - | chr5_2:28499078-28499097 | Msa0766600:CDS | 20.0% |
| !! | TTAAATAAAAAGTTAAGAGC+TGG | + | chr5_2:28499104-28499123 | None:intergenic | 20.0% |
| !! | TCTTCAATTCTTAATTTCTT+AGG | + | chr5_2:28499941-28499960 | None:intergenic | 20.0% |
| !! | ATTCAACCATTAAGCTTTTT+GGG | - | chr5_2:28493704-28493723 | Msa0766600:intron | 25.0% |
| ! | TATATCTCTTTGAATCATGT+TGG | + | chr5_2:28493867-28493886 | None:intergenic | 25.0% |
| ! | ACATGATTCAAAGAGATATA+AGG | - | chr5_2:28493867-28493886 | Msa0766600:intron | 25.0% |
| !! | TAACTTTGTGGTTCATATTT+TGG | - | chr5_2:28494242-28494261 | Msa0766600:intron | 25.0% |
| !! | ACTTTGTTCATCAATTTTAG+TGG | + | chr5_2:28494454-28494473 | None:intergenic | 25.0% |
| ! | CTTGTCAAGAAAATCAATAT+TGG | - | chr5_2:28494762-28494781 | Msa0766600:intron | 25.0% |
| ! | TCTTCAATTCTCAATTTCTT+AGG | + | chr5_2:28495041-28495060 | None:intergenic | 25.0% |
| !!! | ATGTTTCTGAAATAGATCAT+AGG | - | chr5_2:28495350-28495369 | Msa0766600:CDS | 25.0% |
| ! | ACATATTATGTAAATGAGAC+AGG | - | chr5_2:28495461-28495480 | Msa0766600:CDS | 25.0% |
| ! | TGTAAAAAAACAAAGAGGTA+TGG | + | chr5_2:28495726-28495745 | None:intergenic | 25.0% |
| !! | CATCAATTTCTAATTTGCAT+TGG | - | chr5_2:28496623-28496642 | Msa0766600:intron | 25.0% |
| !!! | AAATTCCTTTTTGCTATTGT+GGG | + | chr5_2:28496662-28496681 | None:intergenic | 25.0% |
| !!! | TAAATTCCTTTTTGCTATTG+TGG | + | chr5_2:28496663-28496682 | None:intergenic | 25.0% |
| ! | ACAATAGCAAAAAGGAATTT+AGG | - | chr5_2:28496662-28496681 | Msa0766600:intron | 25.0% |
| ! | ACTAAATTCAAAGAATCCTT+TGG | - | chr5_2:28496824-28496843 | Msa0766600:intron | 25.0% |
| ! | AATAATCATCGAAGAATACA+AGG | - | chr5_2:28496854-28496873 | Msa0766600:intron | 25.0% |
| !! | TTATCCGACAATTTTAGATA+TGG | + | chr5_2:28497034-28497053 | None:intergenic | 25.0% |
| ! | GGGCTGAATATATAATTAAT+TGG | - | chr5_2:28497067-28497086 | Msa0766600:intron | 25.0% |
| ! | TATTACCATAAAAAGGTTGT+AGG | + | chr5_2:28497204-28497223 | None:intergenic | 25.0% |
| ! | AAACAGCTATTACCATAAAA+AGG | + | chr5_2:28497211-28497230 | None:intergenic | 25.0% |
| ! | TGATAAAATATTGGCATGAT+TGG | - | chr5_2:28497341-28497360 | Msa0766600:intron | 25.0% |
| ! | GGAAAATTAAGAGAAATTTC+GGG | + | chr5_2:28497380-28497399 | None:intergenic | 25.0% |
| !! | TGGATGATCTTTTATCAATT+TGG | - | chr5_2:28497421-28497440 | Msa0766600:intron | 25.0% |
| ! | TTCATGGAATCTAAACAATT+TGG | + | chr5_2:28497458-28497477 | None:intergenic | 25.0% |
| ! | AAAAAAACTATAGTGCTCTT+AGG | + | chr5_2:28497580-28497599 | None:intergenic | 25.0% |
| !!! | TTTTGTAACACTTTTTTGCA+TGG | + | chr5_2:28497761-28497780 | None:intergenic | 25.0% |
| !!! | ACTAAAGCTTTTTAGTAACA+CGG | - | chr5_2:28497830-28497849 | Msa0766600:intron | 25.0% |
| ! | GTAACATTTGAACAATTGTT+AGG | + | chr5_2:28497862-28497881 | None:intergenic | 25.0% |
| !! | TTTCACTCTATTCTTTTAAC+AGG | - | chr5_2:28497984-28498003 | Msa0766600:intron | 25.0% |
| ! | AAAAAGGCAAAAGTTGAAAA+AGG | - | chr5_2:28498165-28498184 | Msa0766600:intron | 25.0% |
| !!! | AAACTTTCATTTTTCCTATG+TGG | - | chr5_2:28498303-28498322 | Msa0766600:intron | 25.0% |
| !!! | TTGATAATGAAGAGTTACAA+GGG | + | chr5_2:28498421-28498440 | None:intergenic | 25.0% |
| !!! | TTGTTGTTGTTTTTGTTTCT+TGG | + | chr5_2:28498454-28498473 | None:intergenic | 25.0% |
| !! | ATTCAACCATAAAGCTTTTT+GGG | - | chr5_2:28498512-28498531 | Msa0766600:intron | 25.0% |
| ! | GAATTCTTCAAAGAGATATA+AGG | - | chr5_2:28498660-28498679 | Msa0766600:intron | 25.0% |
| ! | TTTCAAGAAAGACCAATAAT+AGG | - | chr5_2:28498971-28498990 | Msa0766600:CDS | 25.0% |
| !! | TAACTTTGTGGTTCATATTT+TGG | - | chr5_2:28494242-28494261 | Msa0766600:intron | 25.0% |
| !!! | ATGTTTCTGAAATAGATCTT+AGG | - | chr5_2:28500282-28500301 | Msa0766600:CDS | 25.0% |
| !! | TTGTTGTTGTTTCTTTGTTC+TGG | + | chr5_2:28493648-28493667 | None:intergenic | 30.0% |
| ! | GATTCAACCATTAAGCTTTT+TGG | - | chr5_2:28493703-28493722 | Msa0766600:intron | 30.0% |
| TTTGAAGAATTCACTTCAAG+TGG | + | chr5_2:28493844-28493863 | None:intergenic | 30.0% | |
| TAAGTTTCATTGCAATCTTG+TGG | - | chr5_2:28493973-28493992 | Msa0766600:CDS | 30.0% | |
| !!! | GTGCACTTTTTTCATCTTTT+TGG | - | chr5_2:28494039-28494058 | Msa0766600:CDS | 30.0% |
| TGAAGTCTATAATCCTAAAC+TGG | - | chr5_2:28494193-28494212 | Msa0766600:intron | 30.0% | |
| AATTGCAATCAAACCAGTTT+AGG | + | chr5_2:28494209-28494228 | None:intergenic | 30.0% | |
| ATCAATTTCAGGAACAATCA+AGG | - | chr5_2:28494289-28494308 | Msa0766600:intron | 30.0% | |
| AGTGAAGATGAAGACATAAT+AGG | + | chr5_2:28494744-28494763 | None:intergenic | 30.0% | |
| TTCCAAGTAAACCTACTTTA+GGG | - | chr5_2:28494952-28494971 | Msa0766600:intron | 30.0% | |
| !! | AAGATGCAAAGGGTTTTAAT+TGG | - | chr5_2:28495069-28495088 | Msa0766600:intron | 30.0% |
| !!! | GGTTTTAATTGGTTAACACT+AGG | - | chr5_2:28495080-28495099 | Msa0766600:intron | 30.0% |
| ! | TTTCAATGGATTTGCATCTA+TGG | - | chr5_2:28495124-28495143 | Msa0766600:intron | 30.0% |
| ! | TTCAATGGATTTGCATCTAT+GGG | - | chr5_2:28495125-28495144 | Msa0766600:intron | 30.0% |
| ATAACACGATGAATAGACAA+AGG | - | chr5_2:28495487-28495506 | Msa0766600:CDS | 30.0% | |
| TGCAGTAGTAGTAATATTGT+TGG | - | chr5_2:28495650-28495669 | Msa0766600:intron | 30.0% | |
| ! | TCTGATTTGTGACACATTTA+TGG | - | chr5_2:28495888-28495907 | Msa0766600:intron | 30.0% |
| TAAGAGAAAAACACAGTAAG+TGG | + | chr5_2:28496035-28496054 | None:intergenic | 30.0% | |
| AATAAATTCTTTGGTCTGCT+AGG | + | chr5_2:28496104-28496123 | None:intergenic | 30.0% | |
| !! | GGTGTAATCTTTGGAATATT+AGG | - | chr5_2:28496168-28496187 | Msa0766600:intron | 30.0% |
| TGTTTATGTTCCTAAAACCA+AGG | + | chr5_2:28496474-28496493 | None:intergenic | 30.0% | |
| AGGAACATAAACACTTTGTT+TGG | - | chr5_2:28496481-28496500 | Msa0766600:intron | 30.0% | |
| ! | GGAACATAAACACTTTGTTT+GGG | - | chr5_2:28496482-28496501 | Msa0766600:intron | 30.0% |
| ! | TTGATATGCTCCTTTTTACA+AGG | - | chr5_2:28496506-28496525 | Msa0766600:intron | 30.0% |
| ! | GATGTGTTTTCCTTGTAAAA+AGG | + | chr5_2:28496519-28496538 | None:intergenic | 30.0% |
| CAAATCTTTGTAGAAAGAGA+GGG | + | chr5_2:28496541-28496560 | None:intergenic | 30.0% | |
| TCAAATCTTTGTAGAAAGAG+AGG | + | chr5_2:28496542-28496561 | None:intergenic | 30.0% | |
| ! | CATAACAATCTAAAGCAAAC+TGG | + | chr5_2:28496705-28496724 | None:intergenic | 30.0% |
| ! | CAGTTTGCTTTAGATTGTTA+TGG | - | chr5_2:28496703-28496722 | Msa0766600:intron | 30.0% |
| TGAATTTAGTTATCTGTCCT+TGG | + | chr5_2:28496814-28496833 | None:intergenic | 30.0% | |
| ATGATTATTAACCTTGCCAA+AGG | + | chr5_2:28496843-28496862 | None:intergenic | 30.0% | |
| ! | TGAATGGTAAACGATTTGTT+GGG | + | chr5_2:28496937-28496956 | None:intergenic | 30.0% |
| TAAATGATCCCTGTATCTTA+AGG | - | chr5_2:28496991-28497010 | Msa0766600:intron | 30.0% | |
| AAATGATCCCTGTATCTTAA+GGG | - | chr5_2:28496992-28497011 | Msa0766600:intron | 30.0% | |
| ! | TCTTAAGGGCTGAATATTTT+AGG | - | chr5_2:28497006-28497025 | Msa0766600:intron | 30.0% |
| ! | GGTACCATATCTAAAATTGT+CGG | - | chr5_2:28497027-28497046 | Msa0766600:intron | 30.0% |
| !! | TCGGATAATTGATTTGCAAA+AGG | - | chr5_2:28497046-28497065 | Msa0766600:intron | 30.0% |
| !! | CGGATAATTGATTTGCAAAA+GGG | - | chr5_2:28497047-28497066 | Msa0766600:intron | 30.0% |
| ! | AAAATATAGTTTTCCGAGCA+TGG | + | chr5_2:28497116-28497135 | None:intergenic | 30.0% |
| TGAAATAAACTAGTTCCATC+AGG | + | chr5_2:28497179-28497198 | None:intergenic | 30.0% | |
| ! | GATTTTTGTAAGAGATTGTG+TGG | - | chr5_2:28497265-28497284 | Msa0766600:intron | 30.0% |
| ! | GATTTCTACTTTGGAAAAGA+CGG | + | chr5_2:28497314-28497333 | None:intergenic | 30.0% |
| CATTCAGATGATTTCTACTT+TGG | + | chr5_2:28497323-28497342 | None:intergenic | 30.0% | |
| ! | TTTTCCTTGAATTATCATCC+AGG | - | chr5_2:28497488-28497507 | Msa0766600:intron | 30.0% |
| TAAACCTGGATGATAATTCA+AGG | + | chr5_2:28497495-28497514 | None:intergenic | 30.0% | |
| !!! | CTAACGTTTTTTAGTGTTAC+TGG | - | chr5_2:28497735-28497754 | Msa0766600:intron | 30.0% |
| !! | CTAAAGCTTTTTAGTAACAC+GGG | - | chr5_2:28497831-28497850 | Msa0766600:intron | 30.0% |
| CAATAGACAAAACCAAGAAA+AGG | - | chr5_2:28498131-28498150 | Msa0766600:intron | 30.0% | |
| !! | CATGTGAAGAGGTTTTATAA+AGG | + | chr5_2:28498350-28498369 | None:intergenic | 30.0% |
| !! | CTTGATAATGAAGAGTTACA+AGG | + | chr5_2:28498422-28498441 | None:intergenic | 30.0% |
| TGAATCATTAGTCATATCTC+TGG | + | chr5_2:28498497-28498516 | None:intergenic | 30.0% | |
| ! | GATTCAACCATAAAGCTTTT+TGG | - | chr5_2:28498511-28498530 | Msa0766600:intron | 30.0% |
| TTTGAAGAATTCACTTCAAG+TGG | + | chr5_2:28493844-28493863 | None:intergenic | 30.0% | |
| ! | AATATGAGTTGGCCTATTAT+TGG | + | chr5_2:28498986-28499005 | None:intergenic | 30.0% |
| TGAAGTCTATAATCCTAAAC+TGG | - | chr5_2:28494193-28494212 | Msa0766600:intron | 30.0% | |
| ATCAATTTCAGAAACCATCA+TGG | - | chr5_2:28499219-28499238 | Msa0766600:CDS | 30.0% | |
| ! | TTCTTCATAATCAAGTACTG+AGG | + | chr5_2:28499255-28499274 | None:intergenic | 30.0% |
| ACTTTGTTCATCAACTTTAG+TGG | + | chr5_2:28499354-28499373 | None:intergenic | 30.0% | |
| ! | AAGAAGAGATTTTGTTCTTG+CGG | + | chr5_2:28499559-28499578 | None:intergenic | 30.0% |
| ACTCATTTGACAATTATGTG+AGG | + | chr5_2:28499594-28499613 | None:intergenic | 30.0% | |
| AGTGAAGTTGAAGACATAAT+AGG | + | chr5_2:28499644-28499663 | None:intergenic | 30.0% | |
| ! | TGATCCAACATTCATTTTCT+TGG | + | chr5_2:28499669-28499688 | None:intergenic | 30.0% |
| AAAATGAATGTTGGATCAGA+AGG | - | chr5_2:28499671-28499690 | Msa0766600:CDS | 30.0% | |
| AAACAGGATAACACATTTCT+GGG | + | chr5_2:28499751-28499770 | None:intergenic | 30.0% | |
| TTCCAAGTAAACCTACTTTA+GGG | - | chr5_2:28494952-28494971 | Msa0766600:intron | 30.0% | |
| ! | TTTCAATGGATTTGCATCTA+TGG | - | chr5_2:28495124-28495143 | Msa0766600:intron | 30.0% |
| ! | TTCAATGGATTTGCATCTAT+GGG | - | chr5_2:28495125-28495144 | Msa0766600:intron | 30.0% |
| GTTGAATCATTAGTCATCTC+TGG | + | chr5_2:28493691-28493710 | None:intergenic | 35.0% | |
| TGTTCTCCCAAAAAGCTTAA+TGG | + | chr5_2:28493713-28493732 | None:intergenic | 35.0% | |
| GCAACTTCAACTTAACTTTG+TGG | - | chr5_2:28494230-28494249 | Msa0766600:intron | 35.0% | |
| ! | TTCATCGTAATCAAGTACTG+AGG | + | chr5_2:28494325-28494344 | None:intergenic | 35.0% |
| !!! | ATCCTCTTTGGTTTGTTTTG+AGG | + | chr5_2:28494349-28494368 | None:intergenic | 35.0% |
| !! | GAAGTTTCTGTTTCTGATGA+GGG | + | chr5_2:28494420-28494439 | None:intergenic | 35.0% |
| !! | AGAAGTTTCTGTTTCTGATG+AGG | + | chr5_2:28494421-28494440 | None:intergenic | 35.0% |
| ! | GGACATGGAACAATTTTGTT+AGG | + | chr5_2:28494498-28494517 | None:intergenic | 35.0% |
| TTGACGATTATGTGAGACAT+CGG | + | chr5_2:28494688-28494707 | None:intergenic | 35.0% | |
| AATAGGAGAATCTGATCCAA+AGG | + | chr5_2:28494727-28494746 | None:intergenic | 35.0% | |
| ! | TTTTTCCACAACAGTTTCCA+TGG | - | chr5_2:28494823-28494842 | Msa0766600:intron | 35.0% |
| ACACAGGATAACACATTGTT+GGG | + | chr5_2:28494851-28494870 | None:intergenic | 35.0% | |
| CATAGTATGCTATATTGGGT+TGG | + | chr5_2:28494878-28494897 | None:intergenic | 35.0% | |
| CAACCCAATATAGCATACTA+TGG | - | chr5_2:28494876-28494895 | Msa0766600:intron | 35.0% | |
| CCACCATAGTATGCTATATT+GGG | + | chr5_2:28494882-28494901 | None:intergenic | 35.0% | |
| ACCACCATAGTATGCTATAT+TGG | + | chr5_2:28494883-28494902 | None:intergenic | 35.0% | |
| GTTCCAAGTAAACCTACTTT+AGG | - | chr5_2:28494951-28494970 | Msa0766600:intron | 35.0% | |
| TTCCCTAAAGTAGGTTTACT+TGG | + | chr5_2:28494957-28494976 | None:intergenic | 35.0% | |
| CTTGAATGTTTCCCTAAAGT+AGG | + | chr5_2:28494966-28494985 | None:intergenic | 35.0% | |
| TTAGGGAAACATTCAAGAGA+TGG | - | chr5_2:28494969-28494988 | Msa0766600:intron | 35.0% | |
| AACCCTTTGCATCTTCATTA+GGG | + | chr5_2:28495064-28495083 | None:intergenic | 35.0% | |
| AAACCCTTTGCATCTTCATT+AGG | + | chr5_2:28495065-28495084 | None:intergenic | 35.0% | |
| TTAACACTAGGAAACAAGAG+TGG | - | chr5_2:28495092-28495111 | Msa0766600:intron | 35.0% | |
| !! | ATTGGCTTTCAATACTGATG+AGG | + | chr5_2:28495180-28495199 | None:intergenic | 35.0% |
| TTCCATGAGAGGATTTGATT+GGG | - | chr5_2:28495227-28495246 | Msa0766600:intron | 35.0% | |
| ACGATGAATAGACAAAGGAA+AGG | - | chr5_2:28495492-28495511 | Msa0766600:intron | 35.0% | |
| ! | GACAAAGGAAAGGAGATTTT+TGG | - | chr5_2:28495502-28495521 | Msa0766600:intron | 35.0% |
| ACATTTATTTCAGTTGGGAG+TGG | - | chr5_2:28495688-28495707 | Msa0766600:intron | 35.0% | |
| TACCACAAAGCACAAAAAGA+AGG | - | chr5_2:28495774-28495793 | Msa0766600:intron | 35.0% | |
| ACCACAAAGCACAAAAAGAA+GGG | - | chr5_2:28495775-28495794 | Msa0766600:intron | 35.0% | |
| TTGTGCTGAAGATTCTCTTT+CGG | + | chr5_2:28495955-28495974 | None:intergenic | 35.0% | |
| TGCTAGGAAATTGAAGTGAA+TGG | + | chr5_2:28496088-28496107 | None:intergenic | 35.0% | |
| ATGAATTGACTGAGCTAGTT+TGG | + | chr5_2:28496143-28496162 | None:intergenic | 35.0% | |
| TCATGATCTGGTGTAATCTT+TGG | - | chr5_2:28496159-28496178 | Msa0766600:intron | 35.0% | |
| CATCTGAATTTGACTGGATA+TGG | - | chr5_2:28496196-28496215 | Msa0766600:intron | 35.0% | |
| ATGTTCACAATCAGGCTATT+AGG | - | chr5_2:28496268-28496287 | Msa0766600:intron | 35.0% | |
| AAACAATGTTCAGGATCCAA+AGG | + | chr5_2:28496296-28496315 | None:intergenic | 35.0% | |
| TGAGACTACAAACAATGTTC+AGG | + | chr5_2:28496305-28496324 | None:intergenic | 35.0% | |
| ! | AAGATAGAATTCTGGTTGGA+AGG | + | chr5_2:28496395-28496414 | None:intergenic | 35.0% |
| CCAACCAGAATTCTATCTTA+CGG | - | chr5_2:28496396-28496415 | Msa0766600:intron | 35.0% | |
| CAACCAGAATTCTATCTTAC+GGG | - | chr5_2:28496397-28496416 | Msa0766600:intron | 35.0% | |
| AACCAGAATTCTATCTTACG+GGG | - | chr5_2:28496398-28496417 | Msa0766600:intron | 35.0% | |
| ! | TTCTAATTTGCATTGGTCTC+TGG | - | chr5_2:28496630-28496649 | Msa0766600:intron | 35.0% |
| TGTTACCCACAATAGCAAAA+AGG | - | chr5_2:28496654-28496673 | Msa0766600:intron | 35.0% | |
| TTTAGGCCTCCAAATTTCAA+TGG | - | chr5_2:28496679-28496698 | Msa0766600:intron | 35.0% | |
| GTACTTTGCGTTTATTCTCA+TGG | + | chr5_2:28496743-28496762 | None:intergenic | 35.0% | |
| ATTCAAAGAATCCTTTGGCA+AGG | - | chr5_2:28496829-28496848 | Msa0766600:intron | 35.0% | |
| AGGATTTCCAAATTTGCGAT+AGG | - | chr5_2:28496874-28496893 | Msa0766600:intron | 35.0% | |
| GTGAATGGTAAACGATTTGT+TGG | + | chr5_2:28496938-28496957 | None:intergenic | 35.0% | |
| CAAATCGTTTACCATTCACA+CGG | - | chr5_2:28496939-28496958 | Msa0766600:intron | 35.0% | |
| AAATCGTTTACCATTCACAC+GGG | - | chr5_2:28496940-28496959 | Msa0766600:intron | 35.0% | |
| TATTCAGCCCTTAAGATACA+GGG | + | chr5_2:28497002-28497021 | None:intergenic | 35.0% | |
| ATATTCAGCCCTTAAGATAC+AGG | + | chr5_2:28497003-28497022 | None:intergenic | 35.0% | |
| ATTTCAGCAATTTCCATGCT+CGG | - | chr5_2:28497100-28497119 | Msa0766600:intron | 35.0% | |
| ! | TCATGCCTACAACCTTTTTA+TGG | - | chr5_2:28497196-28497215 | Msa0766600:intron | 35.0% |
| GGAAAACAATTTGCACTTCA+TGG | + | chr5_2:28497474-28497493 | None:intergenic | 35.0% | |
| GTCATAGTTGAGTATAAACC+TGG | + | chr5_2:28497509-28497528 | None:intergenic | 35.0% | |
| TCTCATCAAAGTGAGTAGAA+AGG | + | chr5_2:28497556-28497575 | None:intergenic | 35.0% | |
| !! | GACTGAAAAATTCTGAAGTG+AGG | + | chr5_2:28497669-28497688 | None:intergenic | 35.0% |
| AGACAAAACCAAGAAAAGGA+AGG | - | chr5_2:28498135-28498154 | Msa0766600:intron | 35.0% | |
| AAAGGAAGGAACTGAGAAAA+AGG | - | chr5_2:28498149-28498168 | Msa0766600:intron | 35.0% | |
| AAGGCAAAAGTTGAAAAAGG+AGG | - | chr5_2:28498168-28498187 | Msa0766600:intron | 35.0% | |
| ATTCATGTGTTCATGTGAAG+AGG | + | chr5_2:28498361-28498380 | None:intergenic | 35.0% | |
| ! | GGTGTTGTGTGTTTGAAAAA+TGG | + | chr5_2:28498542-28498561 | None:intergenic | 35.0% |
| AAACTCAGAGGAACAATCAT+CGG | + | chr5_2:28493755-28493774 | None:intergenic | 35.0% | |
| GTTGCAAATCAAACCAGTTT+AGG | + | chr5_2:28499039-28499058 | None:intergenic | 35.0% | |
| !! | TCATAATCAAGTACTGAGGT+GGG | + | chr5_2:28499251-28499270 | None:intergenic | 35.0% |
| !! | TTCATAATCAAGTACTGAGG+TGG | + | chr5_2:28499252-28499271 | None:intergenic | 35.0% |
| ! | GGACATGGAAGAATTTTGTT+TGG | + | chr5_2:28499398-28499417 | None:intergenic | 35.0% |
| GCAAAAACTGTCAGAGATAT+TGG | - | chr5_2:28499489-28499508 | Msa0766600:CDS | 35.0% | |
| TTGACAATTATGTGAGGCAT+CGG | + | chr5_2:28499588-28499607 | None:intergenic | 35.0% | |
| ! | ATGAGTACTGTCTTGAACTT+TGG | - | chr5_2:28499608-28499627 | Msa0766600:CDS | 35.0% |
| ! | TTTTTCCACAACAGTTTCCA+TGG | - | chr5_2:28494823-28494842 | Msa0766600:intron | 35.0% |
| GAAACAGGATAACACATTTC+TGG | + | chr5_2:28499752-28499771 | None:intergenic | 35.0% | |
| !! | ATATTGGGTTGGAATGAAAC+AGG | + | chr5_2:28499767-28499786 | None:intergenic | 35.0% |
| CATAGTATGCTATATTGGGT+TGG | + | chr5_2:28494878-28494897 | None:intergenic | 35.0% | |
| CAACCCAATATAGCATACTA+TGG | - | chr5_2:28494876-28494895 | Msa0766600:intron | 35.0% | |
| CCACCATAGTATGCTATATT+GGG | + | chr5_2:28494882-28494901 | None:intergenic | 35.0% | |
| ACCACCATAGTATGCTATAT+TGG | + | chr5_2:28494883-28494902 | None:intergenic | 35.0% | |
| GTTCCAAGTAAACCTACTTT+AGG | - | chr5_2:28494951-28494970 | Msa0766600:intron | 35.0% | |
| TTCCCTAAAGTAGGTTTACT+TGG | + | chr5_2:28494957-28494976 | None:intergenic | 35.0% | |
| CTTGAATGTTTCCCTAAAGT+AGG | + | chr5_2:28494966-28494985 | None:intergenic | 35.0% | |
| TTAGGGAAACATTCAAGAGA+TGG | - | chr5_2:28494969-28494988 | Msa0766600:intron | 35.0% | |
| ! | GGTTCTAATTGGTTAACACT+AGG | - | chr5_2:28499980-28499999 | Msa0766600:intron | 35.0% |
| TTCACAATCAAATCCTCTCA+CGG | + | chr5_2:28500132-28500151 | None:intergenic | 35.0% | |
| AAATCTTCATGAGCAAGAGG+AGG | + | chr5_2:28493781-28493800 | None:intergenic | 40.0% | |
| GAGAAATCTTCATGAGCAAG+AGG | + | chr5_2:28493784-28493803 | None:intergenic | 40.0% | |
| !! | TCGTAATCAAGTACTGAGGT+GGG | + | chr5_2:28494321-28494340 | None:intergenic | 40.0% |
| !! | ATCGTAATCAAGTACTGAGG+TGG | + | chr5_2:28494322-28494341 | None:intergenic | 40.0% |
| AGCCTCAAAACAAACCAAAG+AGG | - | chr5_2:28494344-28494363 | Msa0766600:CDS | 40.0% | |
| !! | GGGAGTGTTTAAATCCTCTT+TGG | + | chr5_2:28494361-28494380 | None:intergenic | 40.0% |
| ATAAGGCTTGAAGATGTGGT+GGG | + | chr5_2:28494381-28494400 | None:intergenic | 40.0% | |
| AATAAGGCTTGAAGATGTGG+TGG | + | chr5_2:28494382-28494401 | None:intergenic | 40.0% | |
| CTCAATAAGGCTTGAAGATG+TGG | + | chr5_2:28494385-28494404 | None:intergenic | 40.0% | |
| !!! | GTGTTTTCGGGTTCTCAATA+AGG | + | chr5_2:28494398-28494417 | None:intergenic | 40.0% |
| !!! | TTTCTGATGAGGGTGTTTTC+GGG | + | chr5_2:28494410-28494429 | None:intergenic | 40.0% |
| !!! | GTTTCTGATGAGGGTGTTTT+CGG | + | chr5_2:28494411-28494430 | None:intergenic | 40.0% |
| TGAACAAAGTGATATGTCCC+AGG | - | chr5_2:28494464-28494483 | Msa0766600:CDS | 40.0% | |
| ! | TTTGTTAGGAGCTTTGTCCT+GGG | + | chr5_2:28494484-28494503 | None:intergenic | 40.0% |
| !! | TTTTGTTAGGAGCTTTGTCC+TGG | + | chr5_2:28494485-28494504 | None:intergenic | 40.0% |
| ATGAGTAGTGTCTTGACCTT+TGG | - | chr5_2:28494708-28494727 | Msa0766600:CDS | 40.0% | |
| TAACACATTGTTGGGTTCCA+TGG | + | chr5_2:28494843-28494862 | None:intergenic | 40.0% | |
| GACACAGGATAACACATTGT+TGG | + | chr5_2:28494852-28494871 | None:intergenic | 40.0% | |
| !! | ATATTGGGTTGGAATGACAC+AGG | + | chr5_2:28494867-28494886 | None:intergenic | 40.0% |
| CCCAATATAGCATACTATGG+TGG | - | chr5_2:28494879-28494898 | Msa0766600:intron | 40.0% | |
| ! | ACACAAGATTGAGTTGCGAT+AGG | + | chr5_2:28494933-28494952 | None:intergenic | 40.0% |
| AGACCCTAATGAAGATGCAA+AGG | - | chr5_2:28495058-28495077 | Msa0766600:intron | 40.0% | |
| GACCCTAATGAAGATGCAAA+GGG | - | chr5_2:28495059-28495078 | Msa0766600:intron | 40.0% | |
| ! | AATGGATTTGCATCTATGGG+TGG | - | chr5_2:28495128-28495147 | Msa0766600:intron | 40.0% |
| GTTCCATGAGAGGATTTGAT+TGG | - | chr5_2:28495226-28495245 | Msa0766600:intron | 40.0% | |
| TTCCCAATCAAATCCTCTCA+TGG | + | chr5_2:28495232-28495251 | None:intergenic | 40.0% | |
| AGTTACCATTGACACAGACA+CGG | + | chr5_2:28495296-28495315 | None:intergenic | 40.0% | |
| ATTTCAGTTGGGAGTGGTAA+AGG | - | chr5_2:28495694-28495713 | Msa0766600:intron | 40.0% | |
| TAGTGAAGTGATCATGCATG+TGG | + | chr5_2:28495756-28495775 | None:intergenic | 40.0% | |
| CCACAAAGCACAAAAAGAAG+GGG | - | chr5_2:28495776-28495795 | Msa0766600:intron | 40.0% | |
| GATTCTCTTTCGGAATGCTA+GGG | + | chr5_2:28495945-28495964 | None:intergenic | 40.0% | |
| AGATTCTCTTTCGGAATGCT+AGG | + | chr5_2:28495946-28495965 | None:intergenic | 40.0% | |
| GAAAGAGAATCTTCAGCACA+AGG | - | chr5_2:28495954-28495973 | Msa0766600:intron | 40.0% | |
| ACACAGTAAGTGGCATGTAA+AGG | + | chr5_2:28496025-28496044 | None:intergenic | 40.0% | |
| AGCTCAGTCAATTCATGATC+TGG | - | chr5_2:28496147-28496166 | Msa0766600:intron | 40.0% | |
| GCACATCATCTGAATTTGAC+TGG | - | chr5_2:28496190-28496209 | Msa0766600:intron | 40.0% | |
| TTTGACTGGATATGGCTTCT+AGG | - | chr5_2:28496204-28496223 | Msa0766600:intron | 40.0% | |
| ACAAGTTAGCAGTAAACCTC+TGG | + | chr5_2:28496362-28496381 | None:intergenic | 40.0% | |
| CCGTAAGATAGAATTCTGGT+TGG | + | chr5_2:28496399-28496418 | None:intergenic | 40.0% | |
| ! | CGTTTTTATCTCTTGAGCCT+TGG | - | chr5_2:28496454-28496473 | Msa0766600:intron | 40.0% |
| !! | ATCTCTTGAGCCTTGGTTTT+AGG | - | chr5_2:28496461-28496480 | Msa0766600:intron | 40.0% |
| AACTGGCCATTGAAATTTGG+AGG | + | chr5_2:28496688-28496707 | None:intergenic | 40.0% | |
| GCAAACTGGCCATTGAAATT+TGG | + | chr5_2:28496691-28496710 | None:intergenic | 40.0% | |
| ! | GAGAATAAACGCAAAGTACC+TGG | - | chr5_2:28496744-28496763 | Msa0766600:intron | 40.0% |
| GTCACAACCTATCGCAAATT+TGG | + | chr5_2:28496884-28496903 | None:intergenic | 40.0% | |
| TGACACTAGTCAACAAGCTA+AGG | - | chr5_2:28496900-28496919 | Msa0766600:intron | 40.0% | |
| GACACTAGTCAACAAGCTAA+GGG | - | chr5_2:28496901-28496920 | Msa0766600:intron | 40.0% | |
| !!! | GCTGTTTTTTGTCCAATGCA+AGG | - | chr5_2:28497224-28497243 | Msa0766600:intron | 40.0% |
| ATTGTACACAGACCTTGCAT+TGG | + | chr5_2:28497239-28497258 | None:intergenic | 40.0% | |
| AATGCAAGGTCTGTGTACAA+TGG | - | chr5_2:28497238-28497257 | Msa0766600:intron | 40.0% | |
| TGTGTGGTGTTTCCATTATC+AGG | - | chr5_2:28497281-28497300 | Msa0766600:intron | 40.0% | |
| CATCAAAGTGAGTAGAAAGG+AGG | + | chr5_2:28497553-28497572 | None:intergenic | 40.0% | |
| GCAATGTGATGTGCAATAAG+TGG | + | chr5_2:28497964-28497983 | None:intergenic | 40.0% | |
| ! | TCTCAGTTCCTTCCTTTTCT+TGG | + | chr5_2:28498146-28498165 | None:intergenic | 40.0% |
| AGTTGAAAAAGGAGGTGACA+TGG | - | chr5_2:28498176-28498195 | Msa0766600:intron | 40.0% | |
| GAGGTGACATGGATGAAAAA+GGG | - | chr5_2:28498187-28498206 | Msa0766600:intron | 40.0% | |
| TGACATGGATGAAAAAGGGT+AGG | - | chr5_2:28498191-28498210 | Msa0766600:intron | 40.0% | |
| TTGTGAGCCACAAATTGTTG+TGG | + | chr5_2:28498284-28498303 | None:intergenic | 40.0% | |
| GTTGGAAAGTAATGCCACAT+AGG | + | chr5_2:28498320-28498339 | None:intergenic | 40.0% | |
| GTAAAGGAGAGAAAGAGAGA+AGG | + | chr5_2:28498394-28498413 | None:intergenic | 40.0% | |
| GAGTTACAAGGGAGAAGTAA+AGG | + | chr5_2:28498410-28498429 | None:intergenic | 40.0% | |
| GGTTCTCCCAAAAAGCTTTA+TGG | + | chr5_2:28498521-28498540 | None:intergenic | 40.0% | |
| AAATCTTCATGAGCAAGAGG+AGG | + | chr5_2:28493781-28493800 | None:intergenic | 40.0% | |
| GAGAAATCTTCATGAGCAAG+AGG | + | chr5_2:28493784-28493803 | None:intergenic | 40.0% | |
| GTTAGGTGTATGCAATCTTG+TGG | - | chr5_2:28498735-28498754 | Msa0766600:intron | 40.0% | |
| GTGTTTAAATCCTCTGTGGT+TGG | + | chr5_2:28499287-28499306 | None:intergenic | 40.0% | |
| !! | GTTTCTGTTTCTGATGTGGT+GGG | + | chr5_2:28499311-28499330 | None:intergenic | 40.0% |
| CACCACATCAGAAACAGAAA+CGG | - | chr5_2:28499310-28499329 | Msa0766600:CDS | 40.0% | |
| !! | TTCCGTTTCTGTTTCTGATG+TGG | + | chr5_2:28499315-28499334 | None:intergenic | 40.0% |
| TGAACAAAGTGATATGTCCC+AGG | - | chr5_2:28494464-28494483 | Msa0766600:CDS | 40.0% | |
| ! | TTTGTTTGGAGCTTTGTCCT+GGG | + | chr5_2:28499384-28499403 | None:intergenic | 40.0% |
| !! | TTTTGTTTGGAGCTTTGTCC+TGG | + | chr5_2:28499385-28499404 | None:intergenic | 40.0% |
| ! | ACAGTTTTTGCAGAAGTGAC+GGG | + | chr5_2:28499480-28499499 | None:intergenic | 40.0% |
| ! | GACAGTTTTTGCAGAAGTGA+CGG | + | chr5_2:28499481-28499500 | None:intergenic | 40.0% |
| TGTCAGAGATATTGGACTTC+CGG | - | chr5_2:28499497-28499516 | Msa0766600:CDS | 40.0% | |
| ! | ACCACTAGAAGTATGCTTGT+AGG | - | chr5_2:28499524-28499543 | Msa0766600:CDS | 40.0% |
| ACCTACAAGCATACTTCTAG+TGG | + | chr5_2:28499528-28499547 | None:intergenic | 40.0% | |
| CTCGCCAAGAAAATGAATGT+TGG | - | chr5_2:28499662-28499681 | Msa0766600:CDS | 40.0% | |
| ! | TAACACATTTCTGGGTTCCA+TGG | + | chr5_2:28499743-28499762 | None:intergenic | 40.0% |
| CCCAATATAGCATACTATGG+TGG | - | chr5_2:28494879-28494898 | Msa0766600:intron | 40.0% | |
| AGCATACTATGGTGGTTGTT+TGG | - | chr5_2:28494887-28494906 | Msa0766600:intron | 40.0% | |
| TAGGTTGTACGCTCAATGAA+GGG | + | chr5_2:28499814-28499833 | None:intergenic | 40.0% | |
| ATAGGTTGTACGCTCAATGA+AGG | + | chr5_2:28499815-28499834 | None:intergenic | 40.0% | |
| AACCCTTTGCAGCTTCATTA+GGG | + | chr5_2:28499964-28499983 | None:intergenic | 40.0% | |
| ! | AAGCTGCAAAGGGTTCTAAT+TGG | - | chr5_2:28499969-28499988 | Msa0766600:intron | 40.0% |
| TTAACACTAGGAAGCAAGAG+TGG | - | chr5_2:28499992-28500011 | Msa0766600:intron | 40.0% | |
| !! | AGTGGTGGAGGATTTTTCAA+TGG | - | chr5_2:28500010-28500029 | Msa0766600:intron | 40.0% |
| GGGTGAAGATAAGAATCATG+TGG | - | chr5_2:28500045-28500064 | Msa0766600:intron | 40.0% | |
| !! | ATTGGCTTTCAATACTGACG+AGG | + | chr5_2:28500080-28500099 | None:intergenic | 40.0% |
| AAAGACCTTGATAAAGCTGC+AGG | + | chr5_2:28500103-28500122 | None:intergenic | 40.0% | |
| ATTTACCGTTGACACAGACA+CGG | + | chr5_2:28500232-28500251 | None:intergenic | 40.0% | |
| AAGAGGAGGAGAAAACTCAG+AGG | + | chr5_2:28493767-28493786 | None:intergenic | 45.0% | |
| ! | ACGCTTTTGCATCTTGGACA+TGG | + | chr5_2:28494513-28494532 | None:intergenic | 45.0% |
| ! | GTGTCTACGCTTTTGCATCT+TGG | + | chr5_2:28494519-28494538 | None:intergenic | 45.0% |
| GCAAAAGCTGCCAGAGATAT+TGG | - | chr5_2:28494589-28494608 | Msa0766600:CDS | 45.0% | |
| TGCCAGAGATATTGGACTTC+CGG | - | chr5_2:28494597-28494616 | Msa0766600:CDS | 45.0% | |
| ! | ACCACGAGAAGTATGCTTGT+AGG | - | chr5_2:28494624-28494643 | Msa0766600:CDS | 45.0% |
| ACCTACAAGCATACTTCTCG+TGG | + | chr5_2:28494628-28494647 | None:intergenic | 45.0% | |
| ! | AGAAGTATGCTTGTAGGTGC+AGG | - | chr5_2:28494630-28494649 | Msa0766600:CDS | 45.0% |
| GTGGTTGTTTAGTCCCATCA+TGG | - | chr5_2:28494898-28494917 | Msa0766600:intron | 45.0% | |
| TAGGTTGTACGCTCCATGAT+GGG | + | chr5_2:28494914-28494933 | None:intergenic | 45.0% | |
| ATAGGTTGTACGCTCCATGA+TGG | + | chr5_2:28494915-28494934 | None:intergenic | 45.0% | |
| ACACTAGGAAACAAGAGTGG+TGG | - | chr5_2:28495095-28495114 | Msa0766600:intron | 45.0% | |
| !! | AGTGGTGGAGGACTTTTCAA+TGG | - | chr5_2:28495110-28495129 | Msa0766600:intron | 45.0% |
| TTGCATCTATGGGTGGTGAT+AGG | - | chr5_2:28495135-28495154 | Msa0766600:intron | 45.0% | |
| CCTTGATAAAGCTGCAGGAT+TGG | + | chr5_2:28495198-28495217 | None:intergenic | 45.0% | |
| ! | CCAATCCTGCAGCTTTATCA+AGG | - | chr5_2:28495195-28495214 | Msa0766600:intron | 45.0% |
| TGAGACCTTGATAAAGCTGC+AGG | + | chr5_2:28495203-28495222 | None:intergenic | 45.0% | |
| AGTTGGGAGTGGTAAAGGAA+GGG | - | chr5_2:28495699-28495718 | Msa0766600:intron | 45.0% | |
| ! | CCCCTTCTTTTTGTGCTTTG+TGG | + | chr5_2:28495779-28495798 | None:intergenic | 45.0% |
| TGATTGGCAACATTGACGCA+AGG | + | chr5_2:28495922-28495941 | None:intergenic | 45.0% | |
| TTTCGGAATGCTAGGGTGAT+TGG | + | chr5_2:28495938-28495957 | None:intergenic | 45.0% | |
| AGAGAATCTTCAGCACAAGG+AGG | - | chr5_2:28495957-28495976 | Msa0766600:intron | 45.0% | |
| CATTACAGAACCCGCAACAA+GGG | + | chr5_2:28495994-28496013 | None:intergenic | 45.0% | |
| ATCAGGCTATTAGGCTCCTT+TGG | - | chr5_2:28496277-28496296 | Msa0766600:intron | 45.0% | |
| !! | TGGTTGTTGGTGATAAGTCC+CGG | + | chr5_2:28496342-28496361 | None:intergenic | 45.0% |
| GACTTATCACCAACAACCAG+AGG | - | chr5_2:28496343-28496362 | Msa0766600:intron | 45.0% | |
| AGCAGTAAACCTCTGGTTGT+TGG | + | chr5_2:28496355-28496374 | None:intergenic | 45.0% | |
| GTCCCCGTAAGATAGAATTC+TGG | + | chr5_2:28496403-28496422 | None:intergenic | 45.0% | |
| ! | TAGCCACTTCGCTTGCATTT+TGG | + | chr5_2:28496596-28496615 | None:intergenic | 45.0% |
| GATTCTTGGTCGTTGAATCC+AGG | + | chr5_2:28496765-28496784 | None:intergenic | 45.0% | |
| GTGTGAGCACAGTAGATTCT+TGG | + | chr5_2:28496779-28496798 | None:intergenic | 45.0% | |
| !! | TTACCATTCACACGGGTTAG+AGG | - | chr5_2:28496947-28496966 | Msa0766600:intron | 45.0% |
| GTGGTGTTTCCATTATCAGG+AGG | - | chr5_2:28497284-28497303 | Msa0766600:intron | 45.0% | |
| GACGGAATACCTCCTGATAA+TGG | + | chr5_2:28497296-28497315 | None:intergenic | 45.0% | |
| GTGAGTAGAAAGGAGGAGAA+GGG | + | chr5_2:28497546-28497565 | None:intergenic | 45.0% | |
| AGTGAGTAGAAAGGAGGAGA+AGG | + | chr5_2:28497547-28497566 | None:intergenic | 45.0% | |
| GGAGGTGACATGGATGAAAA+AGG | - | chr5_2:28498186-28498205 | Msa0766600:intron | 45.0% | |
| TGAGATCTTAGTGCCTAGCT+GGG | + | chr5_2:28498258-28498277 | None:intergenic | 45.0% | |
| CTCACAGCCACAACAATTTG+TGG | - | chr5_2:28498274-28498293 | Msa0766600:intron | 45.0% | |
| AAGGAGAGAAAGAGAGAAGG+AGG | + | chr5_2:28498391-28498410 | None:intergenic | 45.0% | |
| AAGAGGAGGAGAAAACTCAG+AGG | + | chr5_2:28493767-28493786 | None:intergenic | 45.0% | |
| !!! | ATCCTCTGTGGTTGGTTTTG+AGG | + | chr5_2:28499279-28499298 | None:intergenic | 45.0% |
| !! | GGGAGTGTTTAAATCCTCTG+TGG | + | chr5_2:28499291-28499310 | None:intergenic | 45.0% |
| !! | CGTTTCTGTTTCTGATGTGG+TGG | + | chr5_2:28499312-28499331 | None:intergenic | 45.0% |
| ! | ACGCTTTTGCATCTTGGACA+TGG | + | chr5_2:28494513-28494532 | None:intergenic | 45.0% |
| ! | GTGTCTACGCTTTTGCATCT+TGG | + | chr5_2:28494519-28494538 | None:intergenic | 45.0% |
| ! | CAGTTTTTGCAGAAGTGACG+GGG | + | chr5_2:28499479-28499498 | None:intergenic | 45.0% |
| CATACTTCTAGTGGTTCCTC+CGG | + | chr5_2:28499519-28499538 | None:intergenic | 45.0% | |
| ! | AGAAGTATGCTTGTAGGTGC+AGG | - | chr5_2:28494630-28494649 | Msa0766600:CDS | 45.0% |
| GGATCAGAAGGTGAAACATC+TGG | - | chr5_2:28499683-28499702 | Msa0766600:CDS | 45.0% | |
| ACAGAAGATTGAGCTGCGAT+AGG | + | chr5_2:28499833-28499852 | None:intergenic | 45.0% | |
| AGACCCTAATGAAGCTGCAA+AGG | - | chr5_2:28499958-28499977 | Msa0766600:intron | 45.0% | |
| GACCCTAATGAAGCTGCAAA+GGG | - | chr5_2:28499959-28499978 | Msa0766600:intron | 45.0% | |
| GAACCCTTTGCAGCTTCATT+AGG | + | chr5_2:28499965-28499984 | None:intergenic | 45.0% | |
| CCTTGATAAAGCTGCAGGAT+TGG | + | chr5_2:28495198-28495217 | None:intergenic | 45.0% | |
| ! | CCAATCCTGCAGCTTTATCA+AGG | - | chr5_2:28495195-28495214 | Msa0766600:intron | 45.0% |
| ! | GGTCTTTTATGTTCCGTGAG+AGG | - | chr5_2:28500116-28500135 | Msa0766600:intron | 45.0% |
| TTTACCGTTGACACAGACAC+GGG | + | chr5_2:28500231-28500250 | None:intergenic | 45.0% | |
| ! | CAGCTTTTGCAGAAGTGACG+GGG | + | chr5_2:28494579-28494598 | None:intergenic | 50.0% |
| ! | GCAGCTTTTGCAGAAGTGAC+GGG | + | chr5_2:28494580-28494599 | None:intergenic | 50.0% |
| ! | GGCAGCTTTTGCAGAAGTGA+CGG | + | chr5_2:28494581-28494600 | None:intergenic | 50.0% |
| CTCCGGAAGTCCAATATCTC+TGG | + | chr5_2:28494602-28494621 | None:intergenic | 50.0% | |
| CAGAGATATTGGACTTCCGG+AGG | - | chr5_2:28494600-28494619 | Msa0766600:CDS | 50.0% | |
| CATACTTCTCGTGGTTCCTC+CGG | + | chr5_2:28494619-28494638 | None:intergenic | 50.0% | |
| GGGTTCCATGGAAACTGTTG+TGG | + | chr5_2:28494831-28494850 | None:intergenic | 50.0% | |
| CTAGGAAACAAGAGTGGTGG+AGG | - | chr5_2:28495098-28495117 | Msa0766600:intron | 50.0% | |
| GGGTGGTGATAGGAATCATG+TGG | - | chr5_2:28495145-28495164 | Msa0766600:intron | 50.0% | |
| GGTCTCATGTGTTCCATGAG+AGG | - | chr5_2:28495216-28495235 | Msa0766600:intron | 50.0% | |
| CGACACTGACACATGTCAGT+AGG | + | chr5_2:28495270-28495289 | None:intergenic | 50.0% | |
| CAGTTGGGAGTGGTAAAGGA+AGG | - | chr5_2:28495698-28495717 | Msa0766600:intron | 50.0% | |
| GAATCTTCAGCACAAGGAGG+TGG | - | chr5_2:28495960-28495979 | Msa0766600:intron | 50.0% | |
| TGGATGATCCACCCTTGTTG+CGG | - | chr5_2:28495980-28495999 | Msa0766600:intron | 50.0% | |
| GCATTACAGAACCCGCAACA+AGG | + | chr5_2:28495995-28496014 | None:intergenic | 50.0% | |
| TCTCAGCAACAGAGTCATCC+CGG | - | chr5_2:28496320-28496339 | Msa0766600:intron | 50.0% | |
| !! | GGTTGTTGGTGATAAGTCCC+GGG | + | chr5_2:28496341-28496360 | None:intergenic | 50.0% |
| ! | CCACTTCGCTTGCATTTTGG+TGG | + | chr5_2:28496593-28496612 | None:intergenic | 50.0% |
| CCACCAAAATGCAAGCGAAG+TGG | - | chr5_2:28496590-28496609 | Msa0766600:intron | 50.0% | |
| CACACTGAGCATGTCTTCCA+AGG | - | chr5_2:28496794-28496813 | Msa0766600:intron | 50.0% | |
| TTATGTGGGTGAACCCAGCT+AGG | - | chr5_2:28498242-28498261 | Msa0766600:intron | 50.0% | |
| GTGAGATCTTAGTGCCTAGC+TGG | + | chr5_2:28498259-28498278 | None:intergenic | 50.0% | |
| ! | GAGGTGGGTTCTTTCCATGA+TGG | + | chr5_2:28499236-28499255 | None:intergenic | 50.0% |
| AGCCTCAAAACCAACCACAG+AGG | - | chr5_2:28499274-28499293 | Msa0766600:CDS | 50.0% | |
| CAGAGATATTGGACTTCCGG+AGG | - | chr5_2:28494600-28494619 | Msa0766600:CDS | 50.0% | |
| GGGTTCCATGGAAACTGTTG+TGG | + | chr5_2:28494831-28494850 | None:intergenic | 50.0% | |
| ACACTAGGAAGCAAGAGTGG+TGG | - | chr5_2:28499995-28500014 | Msa0766600:intron | 50.0% | |
| ! | ATATGTTGCACCGACACCTC+AGG | - | chr5_2:28500151-28500170 | Msa0766600:CDS | 50.0% |
| GGGCATGACATGGAATAGAC+AGG | + | chr5_2:28500211-28500230 | None:intergenic | 50.0% | |
| !! | TTTTGCAGAAGTGACGGGGC+TGG | + | chr5_2:28494575-28494594 | None:intergenic | 55.0% |
| CGTGTCCGTGTCTGTGTCAA+TGG | - | chr5_2:28495288-28495307 | Msa0766600:intron | 55.0% | |
| GGATGATCCACCCTTGTTGC+GGG | - | chr5_2:28495981-28496000 | Msa0766600:intron | 55.0% | |
| TACAGAACCCGCAACAAGGG+TGG | + | chr5_2:28495991-28496010 | None:intergenic | 55.0% | |
| CTCAGCAACAGAGTCATCCC+GGG | - | chr5_2:28496321-28496340 | Msa0766600:intron | 55.0% | |
| CGACCTCTAACCCGTGTGAA+TGG | + | chr5_2:28496953-28496972 | None:intergenic | 55.0% | |
| !! | TTTTGCAGAAGTGACGGGGC+TGG | + | chr5_2:28494575-28494594 | None:intergenic | 55.0% |
| CTAGGAAGCAAGAGTGGTGG+AGG | - | chr5_2:28499998-28500017 | Msa0766600:intron | 55.0% | |
| ACGCCTTCAACCTGAGGTGT+CGG | + | chr5_2:28500164-28500183 | None:intergenic | 55.0% | |
| ACACAGACACGGGCATGACA+TGG | + | chr5_2:28500221-28500240 | None:intergenic | 55.0% | |
| CATGCCCGTGTCTGTGTCAA+CGG | - | chr5_2:28500224-28500243 | Msa0766600:CDS | 55.0% | |
| !! | GCACCGACACCTCAGGTTGA+AGG | - | chr5_2:28500158-28500177 | Msa0766600:CDS | 60.0% |
| ACGAGCACGCCTTCAACCTG+AGG | + | chr5_2:28500170-28500189 | None:intergenic | 60.0% | |
| ! | GCAGAAGTGACGGGGCTGGT+TGG | + | chr5_2:28494571-28494590 | None:intergenic | 65.0% |
| ! | GCAGAAGTGACGGGGCTGGT+TGG | + | chr5_2:28494571-28494590 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 28493642 | 28500365 | 28493642 | ID=Msa0766600;Name=Msa0766600 |
| chr5_2 | mRNA | 28493642 | 28500365 | 28493642 | ID=Msa0766600-mRNA-1;Parent=Msa0766600;Name=Msa0766600-mRNA-1;_AED=0.15;_eAED=0.21;_QI=52|0.22|0|1|0.55|0.4|10|0|625 |
| chr5_2 | exon | 28500119 | 28500365 | 28500119 | ID=Msa0766600-mRNA-1:exon:11015;Parent=Msa0766600-mRNA-1 |
| chr5_2 | exon | 28499477 | 28499707 | 28499477 | ID=Msa0766600-mRNA-1:exon:11014;Parent=Msa0766600-mRNA-1 |
| chr5_2 | exon | 28499197 | 28499431 | 28499197 | ID=Msa0766600-mRNA-1:exon:11013;Parent=Msa0766600-mRNA-1 |
| chr5_2 | exon | 28499050 | 28499170 | 28499050 | ID=Msa0766600-mRNA-1:exon:11012;Parent=Msa0766600-mRNA-1 |
| chr5_2 | exon | 28498791 | 28499021 | 28498791 | ID=Msa0766600-mRNA-1:exon:11011;Parent=Msa0766600-mRNA-1 |
| chr5_2 | exon | 28495326 | 28495509 | 28495326 | ID=Msa0766600-mRNA-1:exon:11010;Parent=Msa0766600-mRNA-1 |
| chr5_2 | exon | 28494577 | 28494777 | 28494577 | ID=Msa0766600-mRNA-1:exon:11009;Parent=Msa0766600-mRNA-1 |
| chr5_2 | exon | 28494303 | 28494531 | 28494303 | ID=Msa0766600-mRNA-1:exon:11008;Parent=Msa0766600-mRNA-1 |
| chr5_2 | exon | 28493927 | 28494167 | 28493927 | ID=Msa0766600-mRNA-1:exon:11007;Parent=Msa0766600-mRNA-1 |
| chr5_2 | exon | 28493642 | 28493648 | 28493642 | ID=Msa0766600-mRNA-1:exon:11006;Parent=Msa0766600-mRNA-1 |
| chr5_2 | five_prime_UTR | 28500314 | 28500365 | 28500314 | ID=Msa0766600-mRNA-1:five_prime_utr;Parent=Msa0766600-mRNA-1 |
| chr5_2 | CDS | 28500119 | 28500313 | 28500119 | ID=Msa0766600-mRNA-1:cds;Parent=Msa0766600-mRNA-1 |
| chr5_2 | CDS | 28499477 | 28499707 | 28499477 | ID=Msa0766600-mRNA-1:cds;Parent=Msa0766600-mRNA-1 |
| chr5_2 | CDS | 28499197 | 28499431 | 28499197 | ID=Msa0766600-mRNA-1:cds;Parent=Msa0766600-mRNA-1 |
| chr5_2 | CDS | 28499050 | 28499170 | 28499050 | ID=Msa0766600-mRNA-1:cds;Parent=Msa0766600-mRNA-1 |
| chr5_2 | CDS | 28498791 | 28499021 | 28498791 | ID=Msa0766600-mRNA-1:cds;Parent=Msa0766600-mRNA-1 |
| chr5_2 | CDS | 28495326 | 28495509 | 28495326 | ID=Msa0766600-mRNA-1:cds;Parent=Msa0766600-mRNA-1 |
| chr5_2 | CDS | 28494577 | 28494777 | 28494577 | ID=Msa0766600-mRNA-1:cds;Parent=Msa0766600-mRNA-1 |
| chr5_2 | CDS | 28494303 | 28494531 | 28494303 | ID=Msa0766600-mRNA-1:cds;Parent=Msa0766600-mRNA-1 |
| chr5_2 | CDS | 28493927 | 28494167 | 28493927 | ID=Msa0766600-mRNA-1:cds;Parent=Msa0766600-mRNA-1 |
| chr5_2 | CDS | 28493642 | 28493648 | 28493642 | ID=Msa0766600-mRNA-1:cds;Parent=Msa0766600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
