AlfalfaGEDB | Msa0845850

M. sativa cultivar zhongmu-4 / Msa0845850

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0845850	XP_003613825.1	67.914	374	73	5	1	343	1	358	1.96e-150	449
Msa0845850	XP_003613825.1	76.744	344	29	4	342	635	1	343	3.41e-162	479

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0845850	sp\|Q8W1E3\|CDF1_ARATH	38.115	244	91	8	432	622	27	263	1.13e-29	122
Msa0845850	sp\|Q8W1E3\|CDF1_ARATH	29.893	281	140	10	106	342	25	292	1.35e-16	84.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0845850	G7KGL7	67.914	374	73	5	1	343	1	358	9.38e-151	449
Msa0845850	G7KGL7	76.744	344	29	4	342	635	1	343	1.63e-162	479

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TFs/TRs:

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Gene ID	Type	Classification
Msa0845850	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0725790	Msa0845850	0.910997	1.000146e-82	-8.615850e-47
Msa0766600	Msa0845850	0.914778	1.285719e-84	-8.615850e-47
Msa0792480	Msa0845850	0.815619	8.425760e-52	-8.615850e-47
Msa0845850	Msa1009990	0.811493	6.812179e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0845850	MtrunA17_Chr5g0417561	76.744	344	29	4	342	635	1	343	3.14e-166	479
Msa0845850	MtrunA17_Chr5g0417561	67.914	374	73	5	1	343	1	358	1.81e-154	449
Msa0845850	MtrunA17_Chr5g0417551	71.733	375	59	6	1	340	1	363	1.56e-164	475
Msa0845850	MtrunA17_Chr5g0417551	73.789	351	35	4	342	635	1	351	6.83e-160	463
Msa0845850	MtrunA17_Chr5g0417601	55.759	382	124	12	1	343	1	376	4.03e-98	305
Msa0845850	MtrunA17_Chr5g0417601	53.639	371	86	13	342	635	1	362	8.65e-87	276
Msa0845850	MtrunA17_Chr5g0417571	57.190	306	83	9	1	265	1	299	5.96e-72	235
Msa0845850	MtrunA17_Chr5g0417571	59.273	275	56	9	342	566	1	269	1.04e-66	221
Msa0845850	MtrunA17_Chr4g0042481	31.743	482	160	23	4	343	6	460	4.15e-31	127
Msa0845850	MtrunA17_Chr4g0042481	39.873	158	61	4	345	484	6	147	2.21e-17	85.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0845850	AT5G62430.1	38.115	244	91	8	432	622	27	263	1.15e-30	122
Msa0845850	AT5G62430.1	29.893	281	140	10	106	342	25	292	1.38e-17	84.3
Msa0845850	AT5G39660.3	30.028	353	105	16	415	633	87	431	2.55e-17	85.5
Msa0845850	AT5G39660.1	30.028	353	105	16	415	633	87	431	2.55e-17	85.5
Msa0845850	AT5G39660.2	30.028	353	105	16	415	633	87	431	2.55e-17	85.5
Msa0845850	AT1G69570.1	29.153	295	105	13	424	624	81	365	1.82e-15	79.3
Msa0845850	AT1G29160.1	72.973	37	10	0	447	483	50	86	5.66e-14	70.9
Msa0845850	AT2G34140.1	47.059	68	30	1	422	483	15	82	4.31e-13	68.2
Msa0845850	AT1G26790.1	61.364	44	17	0	440	483	92	135	1.73e-11	66.6
Msa0845850	AT3G47500.1	52.239	67	31	1	418	483	68	134	4.09e-11	66.2

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Find 116 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAATGTTGGATCAGA+AGG	0.495845	5_4:+25256036	Msa0845850:CDS
AAACAGGATAACACATTGCT+GGG	0.549807	5_4:-25256113	None:intergenic
AAACCCTTTGCATCTTCATT+AGG	0.263138	5_4:-25251418	None:intergenic
AAACTCAGAGGAACAATCAT+CGG	0.585405	5_4:-25254933	None:intergenic
AAATCTTCATGAGCAAGAGG+AGG	0.659290	5_4:-25250133	None:intergenic
AAATCTTCATGAGCAAGAGG+AGG	0.659290	5_4:-25254959	None:intergenic
AACCCAATATAGCATACTAT+GGG	0.495182	5_4:+25256142	Msa0845850:CDS
AACCCTTTGCAGCTTCATTA+GGG	0.351302	5_4:-25256326	None:intergenic
AACCCTTTGCATCTTCATTA+GGG	0.318049	5_4:-25251417	None:intergenic
AAGAGGAGGAGAAAACTCAG+AGG	0.721417	5_4:-25250119	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGAAGAATTCACTTCAAG+TGG	-	chr5_4:25250199-25250218	None:intergenic	30.0%
TAAGTTTCATTGCAATCTTG+TGG	+	chr5_4:25250329-25250348	Msa0845850:intron	30.0%
TGAAGTCTATAATCCTAAAC+TGG	+	chr5_4:25250549-25250568	Msa0845850:intron	30.0%
AATTGCAATCAAACCAGTTT+AGG	-	chr5_4:25250565-25250584	None:intergenic	30.0%
ATCAATTTCAGGAACAATCA+AGG	+	chr5_4:25250645-25250664	Msa0845850:intron	30.0%
AGTGAAGATGAAGACATAAT+AGG	-	chr5_4:25251100-25251119	None:intergenic	30.0%
TTCCCTAAAATAGGTTTACT+TGG	-	chr5_4:25251313-25251332	None:intergenic	30.0%
CTTGAATGTTTCCCTAAAAT+AGG	-	chr5_4:25251322-25251341	None:intergenic	30.0%
ATAACACGATGAATAGACAA+AGG	+	chr5_4:25251843-25251862	Msa0845850:intron	30.0%
TAAGAGAAAAACACAGTAAG+TGG	-	chr5_4:25252384-25252403	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	25249997	25256446	25249997	ID=Msa0845850;Name=Msa0845850
chr5_4	mRNA	25249997	25256446	25249997	ID=Msa0845850-mRNA-1;Parent=Msa0845850;Name=Msa0845850-mRNA-1;_AED=0.15;_eAED=0.19;_QI=52\|0.25\|0\|1\|0.25\|0.11\|9\|0\|635
chr5_4	exon	25249997	25250243	25249997	ID=Msa0845850-mRNA-1:exon:10054;Parent=Msa0845850-mRNA-1
chr5_4	exon	25250656	25250886	25250656	ID=Msa0845850-mRNA-1:exon:10055;Parent=Msa0845850-mRNA-1
chr5_4	exon	25250891	25250997	25250891	ID=Msa0845850-mRNA-1:exon:10056;Parent=Msa0845850-mRNA-1
chr5_4	exon	25251072	25251313	25251072	ID=Msa0845850-mRNA-1:exon:10057;Parent=Msa0845850-mRNA-1
chr5_4	exon	25251329	25251572	25251329	ID=Msa0845850-mRNA-1:exon:10058;Parent=Msa0845850-mRNA-1
chr5_4	exon	25254871	25255054	25254871	ID=Msa0845850-mRNA-1:exon:10059;Parent=Msa0845850-mRNA-1
chr5_4	exon	25255601	25255844	25255601	ID=Msa0845850-mRNA-1:exon:10060;Parent=Msa0845850-mRNA-1
chr5_4	exon	25255917	25256165	25255917	ID=Msa0845850-mRNA-1:exon:10061;Parent=Msa0845850-mRNA-1
chr5_4	exon	25256238	25256446	25256238	ID=Msa0845850-mRNA-1:exon:10062;Parent=Msa0845850-mRNA-1
chr5_4	five_prime_UTR	25249997	25250048	25249997	ID=Msa0845850-mRNA-1:five_prime_utr;Parent=Msa0845850-mRNA-1
chr5_4	CDS	25250049	25250243	25250049	ID=Msa0845850-mRNA-1:cds;Parent=Msa0845850-mRNA-1
chr5_4	CDS	25250656	25250886	25250656	ID=Msa0845850-mRNA-1:cds;Parent=Msa0845850-mRNA-1
chr5_4	CDS	25250891	25250997	25250891	ID=Msa0845850-mRNA-1:cds;Parent=Msa0845850-mRNA-1
chr5_4	CDS	25251072	25251313	25251072	ID=Msa0845850-mRNA-1:cds;Parent=Msa0845850-mRNA-1
chr5_4	CDS	25251329	25251572	25251329	ID=Msa0845850-mRNA-1:cds;Parent=Msa0845850-mRNA-1
chr5_4	CDS	25254871	25255054	25254871	ID=Msa0845850-mRNA-1:cds;Parent=Msa0845850-mRNA-1
chr5_4	CDS	25255601	25255844	25255601	ID=Msa0845850-mRNA-1:cds;Parent=Msa0845850-mRNA-1
chr5_4	CDS	25255917	25256165	25255917	ID=Msa0845850-mRNA-1:cds;Parent=Msa0845850-mRNA-1
chr5_4	CDS	25256238	25256446	25256238	ID=Msa0845850-mRNA-1:cds;Parent=Msa0845850-mRNA-1

Gene Sequence

>Msa0845850

ATGACTAATGATTCAACCATTAAGCTTTTTGGGAGAACAATTTTTCAAACACACAACACTGATGATTGTTCCTCTGAGTTTTCTCCTCCTCTTGCTCATGAAGATTTCTCTGATCATAGTCTTCATTCATCTTTATCTTCATCTTCTCCACTTGAAGTGAATTCTTCAAACCAACATGATTCAAAGAGATATAAGGAACAATCAAGGAAAGAACCCACCTCAGTACTTGATTACGATGAAGCCTCAAAACAAACCAAAGAGGATTTAAACACTCCCACCACATCTTCAAGCCTTATTGAGAACCCGAAAACACCCTCATCAGAAACAGAAACTTCTCAACAGAATTCCACTAAAATTGATGAACAAAGTGATATGTCCCAGGACAAAGCTCCTAACAAAATTGTTCCATGTCCAAGATGCAAAAGCACACAAAATTTTGTTACTACAATAATTACAACGCCAACCAGCCCCGTCACTTCTGCAAAAGCTGCCAGAGATATTGGACTTCCGGAGGAACCACGAGAAGTATGCTTTGTCTTGACCTTTGGATCAGATTCTCCTATTATGTCTTCATCTTCACTTGTCAAGAAAATCAATATTGGATCAAATGATGAAACATCTGATAAGAGTAATCAGTGTTTTTTTCCACAACAGTTTCCATGGAACCCAACAATGTGTTATCCTGTGTCATTCCAACCCAATATAGCATACTATGGTGGTTGTTTAGTCCCATCATGGAGCGTACAACCTATCGCAACTCAATCTTGTGTTCCAAGGAAACATTCAAGAGATGGCTTAGAAAATAACAACAAAGAAAGTGATAATAATAGTGTGTTGATTCCTAAGAAATTGAGAATTGAAGACCCTAATGAAGATGCAAAGGGTTTTAATTGGTTAACACTAGGAAACAAGAGTGGTGGAGGACTTTTCAATGGATTTGCATCTATGGGTGGTGATAGGAATCATGTGGTTGAAGCAGCCTCATCAGTATTGAAAGCCAATCCTGCAGCTTTATCAAGAGATATGACTAATGATTCAACCATAAAGCTTTTTGGGAGAACCATTTTTCAAACACACAACACCGATGATTGTTCCTCTGAGTTTTCTCCTCCTCTTGCTCATGAAGATTTCTCTGATCATAGTCTTCATTCATCTTTATCTTCATCTTCTCCACTTGAAGTGAATTCTTCAAAGAGATATAAGAAACCATCAAGGAAAGAACCTACCTCAGTACTTGATTATGAAGAAGCCTCAAAACCCACCACAGAGGATTTCAACACTCCCACCACATCAGAAACAGAAACTTCTCAACTGAATTCCACGAAAGTTGATGAACAAAGTGATATTTCCCAGGACAAAGCTCCAAACAAAATTCTTCCATGTCCAAGATGCAAAAGCATAGACACAAAATTTTGTTACTTCAATAATTACAATGCCAACCAGCCCCGTCGTCGCAAGAACAAAATCTCTTCTTTTTCTTCCGATGCCTCACATAATCGTCAAATGAGTACTGTCTTGAACTTTGGATCAGATTCTCCTATTATGTCTTCAACTTCACTCGACAAGAAAATGAATGTTGGATCAGAAGGTGAAACATCTGGTAAGAGTAATCAGTGTTTTTTTCCACAACAGTTTCCATGGAACCCAGCAATGTGTTATCCTGTTTCATTCCAACCCAATATAGCATACTATGGGGGGAAACATTCAAGAGATGGCTTAGAAAATAACAAGAAAGAAAGTGATAATAATAGTGTGTTGATTCCTAAGAAATTAAGAATTGAAGACCCTAATGAAGCTGCAAAGGGTTCTAATTGGTTAACACTTGGAATCAAAAGTGGTGGAGCATTTTTCAATGGATTTGCATCTATGGGTGGTGATAAGAATCATGTGGTTGAAGCAGCCTCA

Protein sequence

>Msa0845850

MTNDSTIKLFGRTIFQTHNTDDCSSEFSPPLAHEDFSDHSLHSSLSSSSPLEVNSSNQHDSKRYKEQSRKEPTSVLDYDEASKQTKEDLNTPTTSSSLIENPKTPSSETETSQQNSTKIDEQSDMSQDKAPNKIVPCPRCKSTQNFVTTIITTPTSPVTSAKAARDIGLPEEPREVCFVLTFGSDSPIMSSSSLVKKINIGSNDETSDKSNQCFFPQQFPWNPTMCYPVSFQPNIAYYGGCLVPSWSVQPIATQSCVPRKHSRDGLENNNKESDNNSVLIPKKLRIEDPNEDAKGFNWLTLGNKSGGGLFNGFASMGGDRNHVVEAASSVLKANPAALSRDMTNDSTIKLFGRTIFQTHNTDDCSSEFSPPLAHEDFSDHSLHSSLSSSSPLEVNSSKRYKKPSRKEPTSVLDYEEASKPTTEDFNTPTTSETETSQLNSTKVDEQSDISQDKAPNKILPCPRCKSIDTKFCYFNNYNANQPRRRKNKISSFSSDASHNRQMSTVLNFGSDSPIMSSTSLDKKMNVGSEGETSGKSNQCFFPQQFPWNPAMCYPVSFQPNIAYYGGKHSRDGLENNKKESDNNSVLIPKKLRIEDPNEAAKGSNWLTLGIKSGGAFFNGFASMGGDKNHVVEAAS