AlfalfaGEDB | Msa0725790

M. sativa cultivar zhongmu-4 / Msa0725790

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0725790	XP_003613823.1	76.136	352	38	4	351	656	1	352	1.38e-163	484
Msa0725790	XP_003613823.1	79.733	375	38	5	1	349	1	363	0.0	558

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0725790	sp\|Q8W1E3\|CDF1_ARATH	38.652	282	125	11	105	351	24	292	9.63e-38	145
Msa0725790	sp\|Q8W1E3\|CDF1_ARATH	39.754	244	108	8	441	647	27	268	1.67e-30	125

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0725790	G7KGL5	76.136	352	38	4	351	656	1	352	6.59e-164	484
Msa0725790	G7KGL5	79.733	375	38	5	1	349	1	363	0.0	558

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TFs/TRs:

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Gene ID	Type	Classification
Msa0725790	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0497160	Msa0725790	0.801314	9.547302e-49	-8.615850e-47
Msa0725790	Msa0766600	0.915572	5.016630e-85	-8.615850e-47
Msa0725790	Msa0792480	0.826281	2.955900e-54	-8.615850e-47
Msa0725790	Msa0837930	0.820328	7.268553e-53	-8.615850e-47
Msa0725790	Msa0845850	0.910997	1.000146e-82	-8.615850e-47
Msa0725790	Msa1009990	0.802604	5.186086e-49	-8.615850e-47
Msa0725790	Msa1130820	0.829823	4.148841e-55	-8.615850e-47
Msa0725790	Msa1406670	0.827455	1.549658e-54	-8.615850e-47
Msa0725790	Msa1448870	0.826031	3.389980e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0725790	MtrunA17_Chr5g0417551	79.733	375	38	5	1	349	1	363	0.0	558
Msa0725790	MtrunA17_Chr5g0417551	76.136	352	38	4	351	656	1	352	1.27e-167	484
Msa0725790	MtrunA17_Chr5g0417561	77.273	374	47	5	1	352	1	358	0.0	545
Msa0725790	MtrunA17_Chr5g0417561	78.488	344	34	4	351	655	1	343	1.05e-169	489
Msa0725790	MtrunA17_Chr5g0417601	59.948	387	109	12	1	352	1	376	7.97e-121	365
Msa0725790	MtrunA17_Chr5g0417601	54.011	374	97	13	351	658	1	365	5.82e-86	275
Msa0725790	MtrunA17_Chr5g0417571	66.340	306	64	10	1	274	1	299	2.33e-101	312
Msa0725790	MtrunA17_Chr5g0417571	57.049	305	62	10	351	592	1	299	5.61e-70	230
Msa0725790	MtrunA17_Chr4g0042481	35.744	484	147	21	4	352	6	460	3.27e-53	190
Msa0725790	MtrunA17_Chr4g0042481	39.241	158	62	5	354	493	6	147	7.46e-17	84.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0725790	AT5G62430.1	38.652	282	125	11	105	351	24	292	9.79e-39	145
Msa0725790	AT5G62430.1	39.754	244	108	8	441	647	27	268	1.70e-31	125
Msa0725790	AT1G69570.1	31.045	335	157	14	82	351	66	391	7.42e-28	116
Msa0725790	AT1G69570.1	30.640	297	109	14	433	644	81	365	3.21e-17	84.7
Msa0725790	AT5G39660.3	28.665	457	205	18	4	349	3	449	1.37e-25	110
Msa0725790	AT5G39660.3	30.747	348	120	16	424	653	87	431	9.77e-20	93.2
Msa0725790	AT5G39660.1	28.665	457	205	18	4	349	3	449	1.37e-25	110
Msa0725790	AT5G39660.1	30.747	348	120	16	424	653	87	431	9.77e-20	93.2
Msa0725790	AT5G39660.2	28.665	457	205	18	4	349	3	449	1.37e-25	110
Msa0725790	AT5G39660.2	30.747	348	120	16	424	653	87	431	9.77e-20	93.2

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Find 121 sgRNAs with CRISPR-Local

Find 730 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAATGTTGGATCAGA+AGG	0.495845	5_1:+25681202	Msa0725790:CDS
AAACAGGATAACACATTGCT+GGG	0.564718	5_1:-25681279	None:intergenic
AAACCCTTTGCATCTTCATT+AGG	0.263138	5_1:-25673775	None:intergenic
AAATCTTCATGAGCAAGAGG+AGG	0.659290	5_1:-25680117	None:intergenic
AAATCTTGATGAGCAAGAGG+AGG	0.659290	5_1:-25672499	None:intergenic
AACCCTTTGCAGCTTCATTA+GGG	0.351302	5_1:-25681492	None:intergenic
AACCCTTTGCATCTTCATTA+GGG	0.318049	5_1:-25673774	None:intergenic
AAGAGGAGGAGAAAACTCAG+AGG	0.721417	5_1:-25672485	None:intergenic
AAGAGGAGGAGAAAACTCAG+AGG	0.721417	5_1:-25680103	None:intergenic
AAGCTGCAAAGGGTTCTAAT+TGG	0.333760	5_1:+25681500	Msa0725790:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGAAGAATTCACTTCAAG+TGG	-	chr5_1:25672565-25672584	None:intergenic	30.0%
CAAGCAAAAAGTTGTCAAAA+TGG	-	chr5_1:25672719-25672738	None:intergenic	30.0%
CATCATGAAATCCAAAAACT+TGG	-	chr5_1:25672836-25672855	None:intergenic	30.0%
TGAAGTCTATAATCCTAAAC+TGG	+	chr5_1:25672913-25672932	Msa0725790:intron	30.0%
TAACTTTGTGGTTCATATCT+TGG	+	chr5_1:25672955-25672974	Msa0725790:intron	30.0%
ATCAATTTCAGGAACAATCA+AGG	+	chr5_1:25673002-25673021	Msa0725790:intron	30.0%
AGTGAAGATGAAGACATAAT+AGG	-	chr5_1:25673457-25673476	None:intergenic	30.0%
TTCCCTAAAATAGGTTTACT+TGG	-	chr5_1:25673670-25673689	None:intergenic	30.0%
CTTGAATGTTTCCCTAAAAT+AGG	-	chr5_1:25673679-25673698	None:intergenic	30.0%
ATAACACGATGAATAGACAA+AGG	+	chr5_1:25674200-25674219	Msa0725790:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	25672363	25681937	25672363	ID=Msa0725790;Name=Msa0725790
chr5_1	mRNA	25672363	25681937	25672363	ID=Msa0725790-mRNA-1;Parent=Msa0725790;Name=Msa0725790-mRNA-1;_AED=0.13;_eAED=0.13;_QI=52\|0.22\|0\|1\|0.22\|0.1\|10\|0\|672
chr5_1	exon	25672363	25672609	25672363	ID=Msa0725790-mRNA-1:exon:9251;Parent=Msa0725790-mRNA-1
chr5_1	exon	25673013	25673243	25673013	ID=Msa0725790-mRNA-1:exon:9252;Parent=Msa0725790-mRNA-1
chr5_1	exon	25673289	25673477	25673289	ID=Msa0725790-mRNA-1:exon:9253;Parent=Msa0725790-mRNA-1
chr5_1	exon	25673484	25673670	25673484	ID=Msa0725790-mRNA-1:exon:9254;Parent=Msa0725790-mRNA-1
chr5_1	exon	25673686	25673929	25673686	ID=Msa0725790-mRNA-1:exon:9255;Parent=Msa0725790-mRNA-1
chr5_1	exon	25680029	25680212	25680029	ID=Msa0725790-mRNA-1:exon:9256;Parent=Msa0725790-mRNA-1
chr5_1	exon	25680767	25681010	25680767	ID=Msa0725790-mRNA-1:exon:9257;Parent=Msa0725790-mRNA-1
chr5_1	exon	25681083	25681331	25681083	ID=Msa0725790-mRNA-1:exon:9258;Parent=Msa0725790-mRNA-1
chr5_1	exon	25681371	25681615	25681371	ID=Msa0725790-mRNA-1:exon:9259;Parent=Msa0725790-mRNA-1
chr5_1	exon	25681890	25681937	25681890	ID=Msa0725790-mRNA-1:exon:9260;Parent=Msa0725790-mRNA-1
chr5_1	five_prime_UTR	25672363	25672414	25672363	ID=Msa0725790-mRNA-1:five_prime_utr;Parent=Msa0725790-mRNA-1
chr5_1	CDS	25672415	25672609	25672415	ID=Msa0725790-mRNA-1:cds;Parent=Msa0725790-mRNA-1
chr5_1	CDS	25673013	25673243	25673013	ID=Msa0725790-mRNA-1:cds;Parent=Msa0725790-mRNA-1
chr5_1	CDS	25673289	25673477	25673289	ID=Msa0725790-mRNA-1:cds;Parent=Msa0725790-mRNA-1
chr5_1	CDS	25673484	25673670	25673484	ID=Msa0725790-mRNA-1:cds;Parent=Msa0725790-mRNA-1
chr5_1	CDS	25673686	25673929	25673686	ID=Msa0725790-mRNA-1:cds;Parent=Msa0725790-mRNA-1
chr5_1	CDS	25680029	25680212	25680029	ID=Msa0725790-mRNA-1:cds;Parent=Msa0725790-mRNA-1
chr5_1	CDS	25680767	25681010	25680767	ID=Msa0725790-mRNA-1:cds;Parent=Msa0725790-mRNA-1
chr5_1	CDS	25681083	25681331	25681083	ID=Msa0725790-mRNA-1:cds;Parent=Msa0725790-mRNA-1
chr5_1	CDS	25681371	25681615	25681371	ID=Msa0725790-mRNA-1:cds;Parent=Msa0725790-mRNA-1
chr5_1	CDS	25681890	25681937	25681890	ID=Msa0725790-mRNA-1:cds;Parent=Msa0725790-mRNA-1

Gene Sequence

>Msa0725790

ATGACTAATGATTCAACCATTAAGCTTTTTGGGAGAACAATTTTTCAAACACACAACACTGATGATTGTTCCTCTGAGTTTTCTCCTCCTCTTGCTCATCAAGATTTCTCTGATCATAGTATTCATTCATCTTTATCTTCATCTTCTCCACTTGAAGTGAATTCTTCAAACCAACATGATTCAAAGAGATATAAGGAACAATCAAGGAAAGAACCCACCTCAGTACTTGATTATGAAGAAGCCTCAAAACAAACCACAGAGGATTTAAACACTCCCACCACATCTTCAAGCCTTATTGAGAACCCGAAAACCCTGTCATCAGAAACAGAAACTTCTCAACTGAATTCCACTAAAATTGATGAACAAAGTGATATGTCACAGGACAAAGCTCCTAACAAAATTGTTCCATGTCCAAGATGCAAAAGCCCCCGTCACTTCTGCAAAAGCTGCCAGAGATATTGGACTTCCGGAGGAACCACGAGAAGTATGCTTGTAGGTGCAGGTCGCCGTAAGAATAAAATCTCTTCTTTTTCTTCCGATGTCTCACATAATCGTCAAATGAGTAGTGTCTTGACCTTTGGATCAGATTCTCCTATTATGTCTTCATCTTCACTTAAAATCAATATTGGATCAAATGATGAAACATCTGATAAGAGTAATCAGTGTTTTTTTCCACAACAGTTTCCATGGAACCCAACAATGTGTTATCCTGTGTCATTCCAACCCAATATAGCATACTATGGTGGTTGTTTAGTCCCATCATGGAGCGTACAACCTATCGCAGCTCAATCTTGTGTTCCAAGGAAACATTCAAGAGATGGCTTAGAAAATAACAACAAAGAAAGTGATAATAATAGTGTGTTGATTCCTAAGAAATTGAGAATTGAAGACCCTAATGAAGATGCAAAGGGTTTTAATTGGTTAACACTAGGAAACAAGAGTGGTGGAGGACTTTTCAATGGATTTGCATCTATGGGTGCTGATAGGAATCATGTGGTTGAAGCAGCCTCATCAGTATTGAAAGCCAATCCTGCAGCTTTATCAAGAGATATGACTAATGATTCAACCATAAAGCTTTTTGGGAGAACCATTTTTCAAACACACAACACAGATGATTGTTCCTCTGAGTTTTCTCCTCCTCTTGCTCATGAAGATTTCTCTGATCATAGTCTTCATTCATCTTTATCTTCGTCTTCTCCACTTGAAGTGAATTCTTCAAAGAGATATAAGAAACCATCAAGGAAAGAACCTACCTCAGTACTTGATTATGAAGAAGCCTCAAAACCCACCACAGAGGATTTCAACACTCCCACCACATCAGAAACAGAAACTTCTCAACTGAATTCCATGAAAGTTGATGAACAAAGTGATATTTCCCAGGACAAAGCTCCAAACAAAATTGTTCCATGTCCAAGATGCAAAAGCGTAGACACAAAATTTTGTTACTACAATAATTACAACGCCAACCAGCCCCGTCGCCGCAAGAACAAAATCTCTTCTTTTTCTTCCGATGCCTCACATAATTGTCAAATGAGTACTGTCTTGAACTTTGGATCAGATTCTCCTATTATGTCTTCAACTTCACTCGCCAAGAAAATGAATGTTGGATCAGAAGGTGAAACATCTGGTAAGAGTAATCAGTGTTTTTTTCCACAACAGTTTCCATGGAACCCAGCAATGTGTTATCCTGTTTCAGTCCAACCCAATATAGCATACTATGGTGCTCAATCTTCTGTTCCAAGTAAACCTACTTTAGGGAAACATTCAAGAGATGGCTTAGAAAATAACAAGAAAGAAAGTGATAATAATAGTGTGTTGATTCCTAAGAAATTAAGAATTGAAGACCCTAATGAAGCTGCAAAGGGTTCTAATTGGTTAACACTAGGAAGCAAGAGTGGTGGAGGATTTTTCAATGGATTTGCATCTATGGGTGAAGATAAGAATCATGTGGTTGAAGCAGCCTCATCAAATCAGATGATTTTGTTGAGTAAATATCCGTTGTACAAATTATGTAAA

Protein sequence

>Msa0725790

MTNDSTIKLFGRTIFQTHNTDDCSSEFSPPLAHQDFSDHSIHSSLSSSSPLEVNSSNQHDSKRYKEQSRKEPTSVLDYEEASKQTTEDLNTPTTSSSLIENPKTLSSETETSQLNSTKIDEQSDMSQDKAPNKIVPCPRCKSPRHFCKSCQRYWTSGGTTRSMLVGAGRRKNKISSFSSDVSHNRQMSSVLTFGSDSPIMSSSSLKINIGSNDETSDKSNQCFFPQQFPWNPTMCYPVSFQPNIAYYGGCLVPSWSVQPIAAQSCVPRKHSRDGLENNNKESDNNSVLIPKKLRIEDPNEDAKGFNWLTLGNKSGGGLFNGFASMGADRNHVVEAASSVLKANPAALSRDMTNDSTIKLFGRTIFQTHNTDDCSSEFSPPLAHEDFSDHSLHSSLSSSSPLEVNSSKRYKKPSRKEPTSVLDYEEASKPTTEDFNTPTTSETETSQLNSMKVDEQSDISQDKAPNKIVPCPRCKSVDTKFCYYNNYNANQPRRRKNKISSFSSDASHNCQMSTVLNFGSDSPIMSSTSLAKKMNVGSEGETSGKSNQCFFPQQFPWNPAMCYPVSVQPNIAYYGAQSSVPSKPTLGKHSRDGLENNKKESDNNSVLIPKKLRIEDPNEAAKGSNWLTLGSKSGGGFFNGFASMGEDKNHVVEAASSNQMILLSKYPLYKLCK