AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0792480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792480 MtrunA17_Chr8g0353801 97.297 296 8 0 1 296 1 296 0.0 602
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 64 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCAGAAAACTGGTCAAAA+TGG 0.212731 5_3:-3699677 Msa0792480:CDS
GTTTCCACCCAGCTCAATTT+TGG 0.250647 5_3:-3696502 Msa0792480:three_prime_UTR
CAAGATCAGCATATAGAAAA+TGG 0.262457 5_3:+3699807 None:intergenic
ACCGGGCGATCAAGATTTAA+TGG 0.329908 5_3:-3699712 Msa0792480:CDS
TTAGGTGAATTGTAACCTTC+AGG 0.333912 5_3:+3699642 None:intergenic
GCTCAGAATGATCCAAGATT+TGG 0.336181 5_3:+3697418 None:intergenic
ACTGAATAATTACAGGGAAT+TGG 0.336493 5_3:+3696578 None:intergenic
ATTCCAGACACTCCAAATCT+TGG 0.354694 5_3:-3697430 Msa0792480:intron
GTTGAAATTGAATTCTAATT+CGG 0.357412 5_3:+3699590 None:intergenic
TTTGGTTGTAATGTAAGTTA+TGG 0.363543 5_3:-3696484 Msa0792480:three_prime_UTR
TTAGCCATGGATTGGTACTA+TGG 0.366474 5_3:-3699759 Msa0792480:exon
TGCATGAACAATCTCTTAGT+TGG 0.367739 5_3:+3696658 None:intergenic
ACAAAGTACTGAATAATTAC+AGG 0.374448 5_3:+3696571 None:intergenic
GCTAGATTGATCTTTATCAT+AGG 0.391039 5_3:+3699527 None:intergenic
ACCAGAAAACTGGTCAAAAT+GGG 0.398356 5_3:-3699676 Msa0792480:CDS
GGCATCCATCACCAGAAAAC+TGG 0.409517 5_3:-3699686 Msa0792480:CDS
TGCATAATACATATAACTTC+TGG 0.435133 5_3:+3696547 None:intergenic
TACATTCAAACAAAATATCA+AGG 0.459131 5_3:+3696386 None:intergenic
CATTACAACCAAAATTGAGC+TGG 0.460144 5_3:+3696494 None:intergenic
TATTATGCAAGTCTTGTTCA+AGG 0.472693 5_3:-3696533 Msa0792480:three_prime_UTR
CTGTTGGTCTCTGATTCCAT+TGG 0.476213 5_3:+3696740 None:intergenic
GCCATTAAATCTTGATCGCC+CGG 0.481344 5_3:+3699711 None:intergenic
TGGAGTTTCTTAGCTATGCT+AGG 0.485951 5_3:-3696464 Msa0792480:three_prime_UTR
ACAGACTATTAGCCATGGAT+TGG 0.499884 5_3:-3699767 Msa0792480:exon
AACGAACGATTTCGTTGTAC+CGG 0.507721 5_3:-3699730 Msa0792480:CDS
TCTTGAGGCAATAATTTCAC+AGG 0.518119 5_3:-3697334 Msa0792480:intron
GGAGTTTCTTAGCTATGCTA+GGG 0.525601 5_3:-3696463 Msa0792480:three_prime_UTR
TTCGGTTGTATCTGAATCCA+TGG 0.525837 5_3:+3699608 None:intergenic
TGATGATTGCTTGAACATAG+AGG 0.536604 5_3:-3698203 Msa0792480:intron
GCATGCTAACATCACCATCC+AGG 0.540288 5_3:+3697134 None:intergenic
TCTAGCAGTTCAAGTGTATG+TGG 0.542953 5_3:-3699510 Msa0792480:CDS
GAATTAGAATTCAATTTCAA+CGG 0.553537 5_3:-3699588 Msa0792480:CDS
ATTACAACCAAAATTGAGCT+GGG 0.568507 5_3:+3696495 None:intergenic
AACTGCTCTGTCGACACTGT+TGG 0.570993 5_3:+3696724 None:intergenic
GATCATTCTGAGCAATTCAG+TGG 0.574655 5_3:-3697408 Msa0792480:CDS
ACGAACGATTTCGTTGTACC+GGG 0.575268 5_3:-3699729 Msa0792480:CDS
CATGCAAGAGGCAATGCCAT+GGG 0.575721 5_3:-3697116 Msa0792480:CDS
GCTTCATTGTGAACTGCCCA+TGG 0.576976 5_3:+3697100 None:intergenic
GCATGCAAGAGGCAATGCCA+TGG 0.580050 5_3:-3697117 Msa0792480:CDS
ATGGATTGGTACTATGGATG+TGG 0.584308 5_3:-3699753 Msa0792480:CDS
AACGGTGAAAGTTTCCGCGA+TGG 0.584616 5_3:-3699570 Msa0792480:CDS
TCAGAATGTAGTAGAGGACC+TGG 0.590986 5_3:-3697152 Msa0792480:CDS
CAAAGTACTGAATAATTACA+GGG 0.592729 5_3:+3696572 None:intergenic
TGGGGAATAAATACACCTGA+AGG 0.602852 5_3:-3699657 Msa0792480:CDS
GCGATCAAGATTTAATGGCT+AGG 0.605112 5_3:-3699707 Msa0792480:CDS
GTCTGACGACAAGAAACCAA+TGG 0.611234 5_3:-3696756 Msa0792480:CDS
ATCTACACTGCAGAATCTTG+AGG 0.615256 5_3:-3697349 Msa0792480:CDS
AAAACATCAGAATGTAGTAG+AGG 0.618804 5_3:-3697158 Msa0792480:CDS
AGAGTTGCATGTAAGATACT+CGG 0.620268 5_3:+3698231 None:intergenic
GGATCAGCATTCACAATATG+CGG 0.622909 5_3:+3696679 None:intergenic
AATCAATGCAGCAATACACC+TGG 0.625933 5_3:-3698396 Msa0792480:intron
ACATCCATAGTACCAATCCA+TGG 0.634261 5_3:+3699755 None:intergenic
CCAGAAAACTGGTCAAAATG+GGG 0.639085 5_3:-3699675 Msa0792480:CDS
TGTGTACAAGAAAATGTCAT+CGG 0.643710 5_3:+3699398 None:intergenic
GTTGCTAATCTCATGTTCAA+CGG 0.648717 5_3:-3696704 Msa0792480:CDS
GGTCAGGCAATGCAATTCTG+AGG 0.656482 5_3:-3696629 Msa0792480:three_prime_UTR
AATGTAGTAGAGGACCTGGA+TGG 0.664719 5_3:-3697148 Msa0792480:CDS
AGCAGTTCAAGTGTATGTGG+AGG 0.666769 5_3:-3699507 Msa0792480:CDS
CAGTTCACAATGAAGCCTTG+AGG 0.672028 5_3:-3697093 Msa0792480:intron
TGGTGATGTTAGCATGCAAG+AGG 0.691812 5_3:-3697128 Msa0792480:CDS
GTACAAGAAAATGTCATCGG+TGG 0.696106 5_3:+3699401 None:intergenic
ACAACCAAAATTGAGCTGGG+TGG 0.710912 5_3:+3696498 None:intergenic
ATTCAAACTTGACTCCATCG+CGG 0.769037 5_3:+3699556 None:intergenic
CAAGGCGGTAAAGTGCATCG+CGG 0.772895 5_3:+3697191 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGAAATTCTTTTTTAAT+GGG + chr5_3:3697117-3697136 None:intergenic 10.0%
!!! AAAATGAAATTCTTTTTTAA+TGG + chr5_3:3697118-3697137 None:intergenic 10.0%
!!! AAAACAATATTTTTTTTACA+GGG - chr5_3:3697462-3697481 Msa0792480:intron 10.0%
!! TAAAAAGTAGTATATTTGAA+AGG + chr5_3:3697228-3697247 None:intergenic 15.0%
!!! AATATACTACTTTTTACATT+TGG - chr5_3:3697232-3697251 Msa0792480:intron 15.0%
!!! TTCAAAATGAACAAATTTTA+CGG + chr5_3:3697281-3697300 None:intergenic 15.0%
!!! CAAAACAATATTTTTTTTAC+AGG - chr5_3:3697461-3697480 Msa0792480:intron 15.0%
!! GTTGAAATTGAATTCTAATT+CGG + chr5_3:3696589-3696608 None:intergenic 20.0%
!! GAATTAGAATTCAATTTCAA+CGG - chr5_3:3696588-3696607 Msa0792480:three_prime_UTR 20.0%
!! CATAATGATTATTATCATAC+AGG + chr5_3:3696841-3696860 None:intergenic 20.0%
!! AAGATAAATATGGTGAAATT+TGG + chr5_3:3696956-3696975 None:intergenic 20.0%
!! ACCATATTTATCTTTATCAT+CGG - chr5_3:3696962-3696981 Msa0792480:intron 20.0%
!!! ATATACTACTTTTTTACCTT+TGG - chr5_3:3697149-3697168 Msa0792480:CDS 20.0%
!!! TCGAACTATATTTTTTTACA+GGG + chr5_3:3697204-3697223 None:intergenic 20.0%
!!! ATCGAACTATATTTTTTTAC+AGG + chr5_3:3697205-3697224 None:intergenic 20.0%
!!! ATTTTCAGGATAAAAGTAAA+AGG + chr5_3:3697763-3697782 None:intergenic 20.0%
!! ATTAAAAGAAAAAGGAGAAA+GGG + chr5_3:3698478-3698497 None:intergenic 20.0%
!! AATTAAAAGAAAAAGGAGAA+AGG + chr5_3:3698479-3698498 None:intergenic 20.0%
!!! TTTCTCCTTTTTCTTTTAAT+TGG - chr5_3:3698478-3698497 Msa0792480:intron 20.0%
!! AAAGTCCAATTAAAAGAAAA+AGG + chr5_3:3698486-3698505 None:intergenic 20.0%
!! TACATTCAAACAAAATATCA+AGG + chr5_3:3699793-3699812 None:intergenic 20.0%
!!! GTTTATAGACCATTTTTTTT+TGG - chr5_3:3699823-3699842 Msa0792480:five_prime_UTR 20.0%
! TCCGATGATAAAGATAAATA+TGG + chr5_3:3696966-3696985 None:intergenic 25.0%
!! TTGAGGTTTACATATGTTTT+TGG - chr5_3:3697059-3697078 Msa0792480:intron 25.0%
! CAAAAAGTGGTATATTTACA+TGG + chr5_3:3697086-3697105 None:intergenic 25.0%
!!! CATGTAAATATACCACTTTT+TGG - chr5_3:3697084-3697103 Msa0792480:intron 25.0%
! AAAAAAGTAGTATATTTGCG+AGG + chr5_3:3697144-3697163 None:intergenic 25.0%
!! TATACTACAGCTTTTACTTT+AGG + chr5_3:3697429-3697448 None:intergenic 25.0%
! TTGAATTAATTTCATGCCTA+TGG + chr5_3:3697636-3697655 None:intergenic 25.0%
! CAAAAGTTCTTAAGACTATA+TGG + chr5_3:3698167-3698186 None:intergenic 25.0%
!! TATTTTGCAAAACATGCAAA+TGG - chr5_3:3698665-3698684 Msa0792480:intron 25.0%
! AATCTAAATCATATACCTCA+AGG + chr5_3:3699101-3699120 None:intergenic 25.0%
!! AGAAAATAGAAGTGTATGTT+TGG + chr5_3:3699244-3699263 None:intergenic 25.0%
!! TCAAACACATACTTTAAGTT+TGG + chr5_3:3699271-3699290 None:intergenic 25.0%
! TTTACAAAATCAAGATCATC+AGG + chr5_3:3699317-3699336 None:intergenic 25.0%
!!! CAAAGTACTGAATAATTACA+GGG + chr5_3:3699607-3699626 None:intergenic 25.0%
!!! ACAAAGTACTGAATAATTAC+AGG + chr5_3:3699608-3699627 None:intergenic 25.0%
! TGCATAATACATATAACTTC+TGG + chr5_3:3699632-3699651 None:intergenic 25.0%
! TTTGGTTGTAATGTAAGTTA+TGG - chr5_3:3699692-3699711 Msa0792480:CDS 25.0%
! TCAAGTTTGCCAAAAAAAAA+TGG + chr5_3:3699835-3699854 None:intergenic 25.0%
!!! AGTTAGGTCATAATTTTTTG+TGG - chr5_3:3699854-3699873 Msa0792480:five_prime_UTR 25.0%
CAAGATCAGCATATAGAAAA+TGG + chr5_3:3696372-3696391 None:intergenic 30.0%
ACCTAAAAATTTCATGACCA+TGG - chr5_3:3696551-3696570 Msa0792480:three_prime_UTR 30.0%
! TCCATGGTCATGAAATTTTT+AGG + chr5_3:3696555-3696574 None:intergenic 30.0%
GCTAGATTGATCTTTATCAT+AGG + chr5_3:3696652-3696671 None:intergenic 30.0%
TGTGTACAAGAAAATGTCAT+CGG + chr5_3:3696781-3696800 None:intergenic 30.0%
AGTCCTTATGAAACAACTAT+TGG - chr5_3:3697336-3697355 Msa0792480:CDS 30.0%
GTCCTTATGAAACAACTATT+GGG - chr5_3:3697337-3697356 Msa0792480:CDS 30.0%
TCCTTATGAAACAACTATTG+GGG - chr5_3:3697338-3697357 Msa0792480:CDS 30.0%
TATTGCACAGACTAATTCAA+AGG - chr5_3:3697384-3697403 Msa0792480:CDS 30.0%
AAAGCTGTAGTATATTTGCA+AGG - chr5_3:3697435-3697454 Msa0792480:intron 30.0%
GTGTAAAAAGAGTAATTACC+AGG + chr5_3:3697801-3697820 None:intergenic 30.0%
CAATACCATAGAAATTGTTC+AGG + chr5_3:3697852-3697871 None:intergenic 30.0%
!! TGCATTCTTTTATTTCCATC+AGG - chr5_3:3697896-3697915 Msa0792480:intron 30.0%
TTACGATTAAGAGTTGAGTT+TGG - chr5_3:3698034-3698053 Msa0792480:intron 30.0%
AAGTTCTTAAGACTATATGG+TGG + chr5_3:3698164-3698183 None:intergenic 30.0%
AAAAACATCATTGCAAAGCA+TGG + chr5_3:3698273-3698292 None:intergenic 30.0%
ATTAAGCTGTTTATCCAATC+AGG - chr5_3:3698374-3698393 Msa0792480:intron 30.0%
TTAAGCTGTTTATCCAATCA+GGG - chr5_3:3698375-3698394 Msa0792480:intron 30.0%
!!! TTAAGAAGCTTTTGAGTTTG+AGG + chr5_3:3698401-3698420 None:intergenic 30.0%
AGAAAAGGTCTCAAAAACAA+GGG + chr5_3:3698432-3698451 None:intergenic 30.0%
TTGAATGTAACCAAATGTGT+CGG + chr5_3:3698543-3698562 None:intergenic 30.0%
AGATGTTGCATTACACTATA+AGG + chr5_3:3698704-3698723 None:intergenic 30.0%
TGAACTAGTTAAGAGAGAAA+GGG + chr5_3:3698943-3698962 None:intergenic 30.0%
TTGAACTAGTTAAGAGAGAA+AGG + chr5_3:3698944-3698963 None:intergenic 30.0%
! ATTCTGATGTTTTGTATCTC+TGG + chr5_3:3699011-3699030 None:intergenic 30.0%
AAAACATCAGAATGTAGTAG+AGG - chr5_3:3699018-3699037 Msa0792480:intron 30.0%
! CAAATGCTACCTTTGTTTAT+AGG - chr5_3:3699398-3699417 Msa0792480:intron 30.0%
GAGATTGTTCATGCAAAAAT+TGG - chr5_3:3699526-3699545 Msa0792480:CDS 30.0%
ACTGAATAATTACAGGGAAT+TGG + chr5_3:3699601-3699620 None:intergenic 30.0%
!! TATTATGCAAGTCTTGTTCA+AGG - chr5_3:3699643-3699662 Msa0792480:CDS 30.0%
ATTACAACCAAAATTGAGCT+GGG + chr5_3:3699684-3699703 None:intergenic 30.0%
! ATGCTAGGGTAAGAAATTTT+AGG - chr5_3:3699727-3699746 Msa0792480:CDS 30.0%
!!! TTTTTTGGCAAACTTGAGTT+AGG - chr5_3:3699838-3699857 Msa0792480:five_prime_UTR 30.0%
! CTTTTACAGACTATTAGCCA+TGG - chr5_3:3696404-3696423 Msa0792480:three_prime_UTR 35.0%
ACCAGAAAACTGGTCAAAAT+GGG - chr5_3:3696500-3696519 Msa0792480:three_prime_UTR 35.0%
TTAGGTGAATTGTAACCTTC+AGG + chr5_3:3696537-3696556 None:intergenic 35.0%
!! ACTTCTGGGATTAATATGCT+TGG - chr5_3:3696807-3696826 Msa0792480:intron 35.0%
TTCATGCTTATAGAGTTGTG+CGG + chr5_3:3697006-3697025 None:intergenic 35.0%
AAGCATGAACCTGTTATAGT+AGG - chr5_3:3697017-3697036 Msa0792480:intron 35.0%
AGCATGAACCTGTTATAGTA+GGG - chr5_3:3697018-3697037 Msa0792480:intron 35.0%
AACCTGTTATAGTAGGGTAA+GGG - chr5_3:3697024-3697043 Msa0792480:intron 35.0%
! AAGGGCTACTATTTTCTTTG+AGG - chr5_3:3697042-3697061 Msa0792480:intron 35.0%
ATGGGACTAATACCAAAAAG+TGG + chr5_3:3697099-3697118 None:intergenic 35.0%
!! ACATTTGGTCTTTGCTGTTT+CGG - chr5_3:3697247-3697266 Msa0792480:intron 35.0%
CCTTATGAAACAACTATTGG+GGG - chr5_3:3697339-3697358 Msa0792480:CDS 35.0%
CTTATGAAACAACTATTGGG+GGG - chr5_3:3697340-3697359 Msa0792480:CDS 35.0%
!! AGGGATTCTAAAGCAAAAAG+TGG - chr5_3:3697481-3697500 Msa0792480:intron 35.0%
GCAAAAAGTGGTAGATTTGT+TGG - chr5_3:3697493-3697512 Msa0792480:intron 35.0%
!! AAGTGGTAGATTTGTTGGTA+CGG - chr5_3:3697498-3697517 Msa0792480:intron 35.0%
TCACATGTTTCACATAATGC+AGG - chr5_3:3697691-3697710 Msa0792480:intron 35.0%
CACATGTTTCACATAATGCA+GGG - chr5_3:3697692-3697711 Msa0792480:intron 35.0%
!! TTGTTTGAGTTTTCAGCACA+TGG + chr5_3:3697738-3697757 None:intergenic 35.0%
!!! GTATTGCTGCATTGATTTTC+AGG + chr5_3:3697777-3697796 None:intergenic 35.0%
AGTTGCCTGAACAATTTCTA+TGG - chr5_3:3697844-3697863 Msa0792480:intron 35.0%
AGAGTTGCATGTAAGATACT+CGG + chr5_3:3697948-3697967 None:intergenic 35.0%
TGATGATTGCTTGAACATAG+AGG - chr5_3:3697973-3697992 Msa0792480:intron 35.0%
! AGATTCATGTTTTACCACCA+CGG + chr5_3:3698111-3698130 None:intergenic 35.0%
!! GACACATAGACAAGAGTATT+TGG + chr5_3:3698199-3698218 None:intergenic 35.0%
! GTGTATAACAAATGACTTGC+AGG + chr5_3:3698221-3698240 None:intergenic 35.0%
CAGCATGAAATGACTTATAC+TGG + chr5_3:3698243-3698262 None:intergenic 35.0%
CAGAAAAGGTCTCAAAAACA+AGG + chr5_3:3698433-3698452 None:intergenic 35.0%
TCTTGAGGCAATAATTTCAC+AGG - chr5_3:3698842-3698861 Msa0792480:intron 35.0%
GAAGTGTATGTTTGGTTGAA+CGG + chr5_3:3699236-3699255 None:intergenic 35.0%
GTTGCTAATCTCATGTTCAA+CGG - chr5_3:3699472-3699491 Msa0792480:CDS 35.0%
TGCATGAACAATCTCTTAGT+TGG + chr5_3:3699521-3699540 None:intergenic 35.0%
TGTTCATGCAAAAATTGGTC+AGG - chr5_3:3699531-3699550 Msa0792480:CDS 35.0%
CATTACAACCAAAATTGAGC+TGG + chr5_3:3699685-3699704 None:intergenic 35.0%
GCACTCATAGAAGAAAAACT+AGG + chr5_3:3699764-3699783 None:intergenic 35.0%
ACAGACTATTAGCCATGGAT+TGG - chr5_3:3696409-3696428 Msa0792480:three_prime_UTR 40.0%
!! TTAGCCATGGATTGGTACTA+TGG - chr5_3:3696417-3696436 Msa0792480:three_prime_UTR 40.0%
ACATCCATAGTACCAATCCA+TGG + chr5_3:3696424-3696443 None:intergenic 40.0%
!! ATGGATTGGTACTATGGATG+TGG - chr5_3:3696423-3696442 Msa0792480:three_prime_UTR 40.0%
AACGAACGATTTCGTTGTAC+CGG - chr5_3:3696446-3696465 Msa0792480:three_prime_UTR 40.0%
GCGATCAAGATTTAATGGCT+AGG - chr5_3:3696469-3696488 Msa0792480:three_prime_UTR 40.0%
!! TTTGACCAGTTTTCTGGTGA+TGG + chr5_3:3696498-3696517 None:intergenic 40.0%
CACCAGAAAACTGGTCAAAA+TGG - chr5_3:3696499-3696518 Msa0792480:three_prime_UTR 40.0%
CCAGAAAACTGGTCAAAATG+GGG - chr5_3:3696501-3696520 Msa0792480:three_prime_UTR 40.0%
TGGGGAATAAATACACCTGA+AGG - chr5_3:3696519-3696538 Msa0792480:three_prime_UTR 40.0%
TTCGGTTGTATCTGAATCCA+TGG + chr5_3:3696571-3696590 None:intergenic 40.0%
ATTCAAACTTGACTCCATCG+CGG + chr5_3:3696623-3696642 None:intergenic 40.0%
TCTAGCAGTTCAAGTGTATG+TGG - chr5_3:3696666-3696685 Msa0792480:exon 40.0%
GTACAAGAAAATGTCATCGG+TGG + chr5_3:3696778-3696797 None:intergenic 40.0%
TTGTACACAAGCGTAACTTC+TGG - chr5_3:3696792-3696811 Msa0792480:intron 40.0%
TGTACACAAGCGTAACTTCT+GGG - chr5_3:3696793-3696812 Msa0792480:intron 40.0%
ATGCAAAGCATACTCATGCT+AGG + chr5_3:3696885-3696904 None:intergenic 40.0%
!! TGCATTTTAGCAAAGTCCAG+TGG - chr5_3:3696900-3696919 Msa0792480:intron 40.0%
!! GCATTTTAGCAAAGTCCAGT+GGG - chr5_3:3696901-3696920 Msa0792480:intron 40.0%
! ATAGAGCATTCAATTCCCAC+TGG + chr5_3:3696919-3696938 None:intergenic 40.0%
TCATCGGAGCCAAAACAAAA+TGG - chr5_3:3696978-3696997 Msa0792480:intron 40.0%
!! TGTGCGGAACCATTTTGTTT+TGG + chr5_3:3696990-3697009 None:intergenic 40.0%
GAACCTGTTATAGTAGGGTA+AGG - chr5_3:3697023-3697042 Msa0792480:intron 40.0%
!!! ACCTTTGGTTCTTGCTGTTT+TGG - chr5_3:3697164-3697183 Msa0792480:CDS 40.0%
ACCAAAACAGCAAGAACCAA+AGG + chr5_3:3697168-3697187 None:intergenic 40.0%
! CCCCCAATAGTTGTTTCATA+AGG + chr5_3:3697342-3697361 None:intergenic 40.0%
AAAGGTGACCAAAGACAACA+AGG - chr5_3:3697402-3697421 Msa0792480:CDS 40.0%
! CTTTAGGTCCTTGTTGTCTT+TGG + chr5_3:3697413-3697432 None:intergenic 40.0%
CAGAGACATTCAATTCTCAC+TGG - chr5_3:3697607-3697626 Msa0792480:intron 40.0%
AATCAATGCAGCAATACACC+TGG - chr5_3:3697780-3697799 Msa0792480:intron 40.0%
AGAGTTGAGTTTGGTATCTC+AGG - chr5_3:3698043-3698062 Msa0792480:intron 40.0%
GAGTTGAGTTTGGTATCTCA+GGG - chr5_3:3698044-3698063 Msa0792480:intron 40.0%
! GATTCATGTTTTACCACCAC+GGG + chr5_3:3698110-3698129 None:intergenic 40.0%
CATCACAAGTTCACAACACA+AGG - chr5_3:3698301-3698320 Msa0792480:intron 40.0%
!! GATGAAGCATTGACATAGAC+AGG + chr5_3:3698630-3698649 None:intergenic 40.0%
ATTCCAGACACTCCAAATCT+TGG - chr5_3:3698746-3698765 Msa0792480:intron 40.0%
GCTCAGAATGATCCAAGATT+TGG + chr5_3:3698761-3698780 None:intergenic 40.0%
GATCATTCTGAGCAATTCAG+TGG - chr5_3:3698768-3698787 Msa0792480:intron 40.0%
ATCTACACTGCAGAATCTTG+AGG - chr5_3:3698827-3698846 Msa0792480:intron 40.0%
GCACATTAAATCAGATGCGA+AGG + chr5_3:3698892-3698911 None:intergenic 40.0%
! GATGTTTTGTATCTCTGGCA+AGG + chr5_3:3699006-3699025 None:intergenic 40.0%
TCGATTGACAGTGAGATTGT+CGG - chr5_3:3699145-3699164 Msa0792480:intron 40.0%
GTCGTCAGACCTATAAACAA+AGG + chr5_3:3699410-3699429 None:intergenic 40.0%
GGATCAGCATTCACAATATG+CGG + chr5_3:3699500-3699519 None:intergenic 40.0%
TGGAGTTTCTTAGCTATGCT+AGG - chr5_3:3699712-3699731 Msa0792480:CDS 40.0%
GGAGTTTCTTAGCTATGCTA+GGG - chr5_3:3699713-3699732 Msa0792480:CDS 40.0%
ACGAACGATTTCGTTGTACC+GGG - chr5_3:3696447-3696466 Msa0792480:three_prime_UTR 45.0%
ACCGGGCGATCAAGATTTAA+TGG - chr5_3:3696464-3696483 Msa0792480:three_prime_UTR 45.0%
GCCATTAAATCTTGATCGCC+CGG + chr5_3:3696468-3696487 None:intergenic 45.0%
!! CCCCATTTTGACCAGTTTTC+TGG + chr5_3:3696504-3696523 None:intergenic 45.0%
AGCAGTTCAAGTGTATGTGG+AGG - chr5_3:3696669-3696688 Msa0792480:exon 45.0%
AGCCCTTACCCTACTATAAC+AGG + chr5_3:3697029-3697048 None:intergenic 45.0%
! CAATTCTCACTGGCTACCAT+AGG - chr5_3:3697617-3697636 Msa0792480:intron 45.0%
TCATTCTGCAGTTCACCTGA+TGG + chr5_3:3697914-3697933 None:intergenic 45.0%
! TTTGAGTTTGAGGCCCTGAT+TGG + chr5_3:3698391-3698410 None:intergenic 45.0%
GGGGAACAGTTACACAGAAA+AGG + chr5_3:3698447-3698466 None:intergenic 45.0%
AAGGAGAAAGGGAGTAGCAT+GGG + chr5_3:3698467-3698486 None:intergenic 45.0%
AAAGGAGAAAGGGAGTAGCA+TGG + chr5_3:3698468-3698487 None:intergenic 45.0%
ATGTCGTGTCAGTGTGATAC+GGG + chr5_3:3698516-3698535 None:intergenic 45.0%
CATGTCGTGTCAGTGTGATA+CGG + chr5_3:3698517-3698536 None:intergenic 45.0%
GTCAATGTCAGTGTCATCTC+TGG - chr5_3:3698600-3698619 Msa0792480:intron 45.0%
! GATCCAAGATTTGGAGTGTC+TGG + chr5_3:3698752-3698771 None:intergenic 45.0%
! GTTTTGTATCTCTGGCAAGG+CGG + chr5_3:3699003-3699022 None:intergenic 45.0%
TCAGAATGTAGTAGAGGACC+TGG - chr5_3:3699024-3699043 Msa0792480:intron 45.0%
AATGTAGTAGAGGACCTGGA+TGG - chr5_3:3699028-3699047 Msa0792480:intron 45.0%
! TGGTGATGTTAGCATGCAAG+AGG - chr5_3:3699048-3699067 Msa0792480:intron 45.0%
CAGTTCACAATGAAGCCTTG+AGG - chr5_3:3699083-3699102 Msa0792480:intron 45.0%
CAGTGAGATTGTCGGAATCA+CGG - chr5_3:3699153-3699172 Msa0792480:intron 45.0%
CGGTGAGTTTGGCAAAATCA+CGG + chr5_3:3699216-3699235 None:intergenic 45.0%
GTTTGGTTGAACGGTGAGTT+TGG + chr5_3:3699227-3699246 None:intergenic 45.0%
GTCTGACGACAAGAAACCAA+TGG - chr5_3:3699420-3699439 Msa0792480:CDS 45.0%
! CTGTTGGTCTCTGATTCCAT+TGG + chr5_3:3699439-3699458 None:intergenic 45.0%
! GTTTCCACCCAGCTCAATTT+TGG - chr5_3:3699674-3699693 Msa0792480:CDS 45.0%
ACAACCAAAATTGAGCTGGG+TGG + chr5_3:3699681-3699700 None:intergenic 45.0%
GGCATCCATCACCAGAAAAC+TGG - chr5_3:3696490-3696509 Msa0792480:three_prime_UTR 50.0%
AACGGTGAAAGTTTCCGCGA+TGG - chr5_3:3696606-3696625 Msa0792480:three_prime_UTR 50.0%
AGGAGAAAGGGAGTAGCATG+GGG + chr5_3:3698466-3698485 None:intergenic 50.0%
CGACATGACACCGACACATT+TGG - chr5_3:3698530-3698549 Msa0792480:intron 50.0%
GCATGCTAACATCACCATCC+AGG + chr5_3:3699045-3699064 None:intergenic 50.0%
CATGCAAGAGGCAATGCCAT+GGG - chr5_3:3699060-3699079 Msa0792480:intron 50.0%
GCTTCATTGTGAACTGCCCA+TGG + chr5_3:3699079-3699098 None:intergenic 50.0%
GGAATCACGGTCAGACACTT+TGG - chr5_3:3699166-3699185 Msa0792480:intron 50.0%
AACTGCTCTGTCGACACTGT+TGG + chr5_3:3699455-3699474 None:intergenic 50.0%
GGTCAGGCAATGCAATTCTG+AGG - chr5_3:3699547-3699566 Msa0792480:CDS 50.0%
CAAGGCGGTAAAGTGCATCG+CGG + chr5_3:3698988-3699007 None:intergenic 55.0%
GCATGCAAGAGGCAATGCCA+TGG - chr5_3:3699059-3699078 Msa0792480:intron 55.0%
ACGGGTCTAGCGCTAGTGGT+TGG + chr5_3:3698092-3698111 None:intergenic 60.0%
AACCACTAGCGCTAGACCCG+TGG - chr5_3:3698091-3698110 Msa0792480:intron 60.0%
CACCACGGGTCTAGCGCTAG+TGG + chr5_3:3698096-3698115 None:intergenic 65.0%
CACTAGCGCTAGACCCGTGG+TGG - chr5_3:3698094-3698113 Msa0792480:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 3696295 3699903 3696295 ID=Msa0792480;Name=Msa0792480
chr5_3 mRNA 3696295 3699903 3696295 ID=Msa0792480-mRNA-1;Parent=Msa0792480;Name=Msa0792480-mRNA-1;_AED=0.23;_eAED=0.23;_QI=128|1|1|1|1|1|6|387|296
chr5_3 exon 3696295 3696778 3696295 ID=Msa0792480-mRNA-1:exon:1651;Parent=Msa0792480-mRNA-1
chr5_3 exon 3697094 3697239 3697094 ID=Msa0792480-mRNA-1:exon:1650;Parent=Msa0792480-mRNA-1
chr5_3 exon 3697335 3697445 3697335 ID=Msa0792480-mRNA-1:exon:1649;Parent=Msa0792480-mRNA-1
chr5_3 exon 3698204 3698280 3698204 ID=Msa0792480-mRNA-1:exon:1648;Parent=Msa0792480-mRNA-1
chr5_3 exon 3698397 3698485 3698397 ID=Msa0792480-mRNA-1:exon:1647;Parent=Msa0792480-mRNA-1
chr5_3 exon 3699405 3699903 3699405 ID=Msa0792480-mRNA-1:exon:1646;Parent=Msa0792480-mRNA-1
chr5_3 five_prime_UTR 3699776 3699903 3699776 ID=Msa0792480-mRNA-1:five_prime_utr;Parent=Msa0792480-mRNA-1
chr5_3 CDS 3699405 3699775 3699405 ID=Msa0792480-mRNA-1:cds;Parent=Msa0792480-mRNA-1
chr5_3 CDS 3698397 3698485 3698397 ID=Msa0792480-mRNA-1:cds;Parent=Msa0792480-mRNA-1
chr5_3 CDS 3698204 3698280 3698204 ID=Msa0792480-mRNA-1:cds;Parent=Msa0792480-mRNA-1
chr5_3 CDS 3697335 3697445 3697335 ID=Msa0792480-mRNA-1:cds;Parent=Msa0792480-mRNA-1
chr5_3 CDS 3697094 3697239 3697094 ID=Msa0792480-mRNA-1:cds;Parent=Msa0792480-mRNA-1
chr5_3 CDS 3696682 3696778 3696682 ID=Msa0792480-mRNA-1:cds;Parent=Msa0792480-mRNA-1
chr5_3 three_prime_UTR 3696295 3696681 3696295 ID=Msa0792480-mRNA-1:three_prime_utr;Parent=Msa0792480-mRNA-1
Gene Sequence

>Msa0792480

ATGGATTGGTACTATGGATGTGGAACGAACGATTTCGTTGTACCGGGCGATCAAGATTTAATGGCTAGGCATCCATCACCAGAAAACTGGTCAAAATGGGGAATAAATACACCTGAAGGTTACAATTCACCTAAAAATTTCATGACCATGGATTCAGATACAACCGAATTAGAATTCAATTTCAACGGTGAAAGTTTCCGCGATGGAGTCAAGTTTGAATCATCTTCCTATGATAAAGATCAATCTAGCAGTTCAAGTGTATGTGGAGGATTGACTGAGCAATCTTTTCAACAATCACGTCATCAGCATCAACAGAATCAGCTTCAAGAACTATCATCAAGTTTCGAGCAGACCACCGATGACATTTTCTTGGATTCTATACTTGAAGATTTTCCATGTGCTGAAAACTCAAACAAGTCCTTTTACTTTTATCCTGAAAATCAATGCAGCAATACACCTGGTGAACTGCAGAATGATATTGCAGCTTCCGAGTATCTTACATGCAACTCTAATTCTGATGATTGCTTGAACATAGAGACACTCCAAATCTTGGATCATTCTGAGCAATTCAGTGGAGATGAAGCAATGCATAAACACTCGTCTATTGAAGAATCTACACTGCAGAATCTTGAGGCAATAATTTCACAGTTCAATGACAAGACTCGAATTCACTTCCGCGATGCACTTTACCGCCTTGCCAGAGATACAAAACATCAGAATGTAGTAGAGGACCTGGATGGTGATGTTAGCATGCAAGAGGCAATGCCATGGGCAGTTCACAATGAAGCCTTGAGGTCTGACGACAAGAAACCAATGGAATCAGAGACCAACAGTGTCGACAGAGCAGTTGCTAATCTCATGTTCAACGGAACCGCATATTGTGAATGCTGA
Protein sequence

>Msa0792480

MDWYYGCGTNDFVVPGDQDLMARHPSPENWSKWGINTPEGYNSPKNFMTMDSDTTELEFNFNGESFRDGVKFESSSYDKDQSSSSSVCGGLTEQSFQQSRHQHQQNQLQELSSSFEQTTDDIFLDSILEDFPCAENSNKSFYFYPENQCSNTPGELQNDIAASEYLTCNSNSDDCLNIETLQILDHSEQFSGDEAMHKHSSIEESTLQNLEAIISQFNDKTRIHFRDALYRLARDTKHQNVVEDLDGDVSMQEAMPWAVHNEALRSDDKKPMESETNSVDRAVANLMFNGTAYCEC*