Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737520 | XP_003616408.2 | 96.795 | 156 | 4 | 1 | 1 | 155 | 1 | 156 | 3.01e-107 | 312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737520 | sp|Q0JHU5|ERG1_ORYSJ | 44.079 | 152 | 83 | 1 | 4 | 153 | 5 | 156 | 1.02e-45 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737520 | G7KBR3 | 96.795 | 156 | 4 | 1 | 1 | 155 | 1 | 156 | 1.44e-107 | 312 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054250 | Msa0737520 | 0.801665 | 8.089602e-49 | -8.615850e-47 |
| Msa0054260 | Msa0737520 | 0.826987 | 2.006068e-54 | -8.615850e-47 |
| Msa0054310 | Msa0737520 | 0.835060 | 2.090879e-56 | -8.615850e-47 |
| Msa0055690 | Msa0737520 | 0.829766 | 4.282905e-55 | -8.615850e-47 |
| Msa0055730 | Msa0737520 | 0.831554 | 1.562743e-55 | -8.615850e-47 |
| Msa0100080 | Msa0737520 | 0.828001 | 1.145984e-54 | -8.615850e-47 |
| Msa0100090 | Msa0737520 | 0.830197 | 3.363518e-55 | -8.615850e-47 |
| Msa0692170 | Msa0737520 | 0.805688 | 1.183242e-49 | -8.615850e-47 |
| Msa0731180 | Msa0737520 | 0.801226 | 9.952572e-49 | -8.615850e-47 |
| Msa0737500 | Msa0737520 | 0.866028 | 3.844920e-65 | -8.615850e-47 |
| Msa0737520 | Msa0771580 | 0.801068 | 1.071925e-48 | -8.615850e-47 |
| Msa0737520 | Msa0776720 | 0.807693 | 4.463086e-50 | -8.615850e-47 |
| Msa0737520 | Msa0779280 | 0.825921 | 3.601424e-54 | -8.615850e-47 |
| Msa0737520 | Msa0784520 | 0.800450 | 1.432983e-48 | -8.615850e-47 |
| Msa0737520 | Msa0872420 | 0.806607 | 7.577132e-50 | -8.615850e-47 |
| Msa0737520 | Msa0974910 | 0.803405 | 3.540682e-49 | -8.615850e-47 |
| Msa0737520 | Msa1027290 | 0.808546 | 2.937470e-50 | -8.615850e-47 |
| Msa0737520 | Msa1077950 | 0.810588 | 1.069849e-50 | -8.615850e-47 |
| Msa0737520 | Msa1110960 | 0.809925 | 1.486683e-50 | -8.615850e-47 |
| Msa0737520 | Msa1381960 | 0.813783 | 2.148549e-51 | -8.615850e-47 |
| Msa0737520 | Msa1384290 | 0.805580 | 1.246366e-49 | -8.615850e-47 |
| Msa0141250 | Msa0737520 | 0.818771 | 1.646791e-52 | -8.615850e-47 |
| Msa0148720 | Msa0737520 | 0.821161 | 4.677921e-53 | -8.615850e-47 |
| Msa0173990 | Msa0737520 | 0.803668 | 3.123379e-49 | -8.615850e-47 |
| Msa0197660 | Msa0737520 | 0.806844 | 6.750861e-50 | -8.615850e-47 |
| Msa0389280 | Msa0737520 | 0.813448 | 2.546985e-51 | -8.615850e-47 |
| Msa0239800 | Msa0737520 | 0.811810 | 5.810071e-51 | -8.615850e-47 |
| Msa0313920 | Msa0737520 | 0.802911 | 4.480126e-49 | -8.615850e-47 |
| Msa0317510 | Msa0737520 | 0.808654 | 2.785623e-50 | -8.615850e-47 |
| Msa0503190 | Msa0737520 | 0.805938 | 1.048332e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737520 | MtrunA17_Chr5g0435261 | 96.795 | 156 | 4 | 1 | 1 | 155 | 1 | 156 | 2.77e-111 | 312 |
| Msa0737520 | MtrunA17_Chr5g0435251 | 59.355 | 155 | 61 | 2 | 1 | 155 | 1 | 153 | 3.24e-58 | 178 |
| Msa0737520 | MtrunA17_Chr8g0350031 | 42.675 | 157 | 75 | 5 | 1 | 154 | 1 | 145 | 1.51e-35 | 120 |
| Msa0737520 | MtrunA17_Chr8g0350021 | 40.127 | 157 | 79 | 5 | 1 | 154 | 1 | 145 | 1.15e-32 | 113 |
| Msa0737520 | MtrunA17_Chr8g0348941 | 31.944 | 144 | 96 | 2 | 1 | 143 | 1 | 143 | 1.20e-19 | 80.9 |
| Msa0737520 | MtrunA17_Chr1g0147471 | 43.750 | 64 | 32 | 1 | 27 | 90 | 2 | 61 | 4.48e-16 | 68.6 |
| Msa0737520 | MtrunA17_Chr7g0246521 | 42.857 | 56 | 28 | 1 | 27 | 82 | 2 | 53 | 4.36e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737520 | AT3G55470.2 | 45.098 | 153 | 83 | 1 | 1 | 153 | 1 | 152 | 3.51e-44 | 143 |
| Msa0737520 | AT3G55470.1 | 44.805 | 154 | 83 | 2 | 1 | 153 | 1 | 153 | 2.54e-42 | 138 |
| Msa0737520 | AT1G63220.1 | 39.623 | 159 | 80 | 6 | 1 | 155 | 1 | 147 | 2.30e-27 | 100 |
| Msa0737520 | AT4G00467.2 | 32.353 | 136 | 87 | 2 | 1 | 134 | 1 | 133 | 7.65e-21 | 84.3 |
| Msa0737520 | AT4G00467.1 | 32.090 | 134 | 90 | 1 | 1 | 134 | 1 | 133 | 1.49e-20 | 84.0 |
| Msa0737520 | AT1G63220.2 | 35.849 | 159 | 72 | 6 | 1 | 155 | 1 | 133 | 1.88e-20 | 82.0 |
| Msa0737520 | AT4G34150.1 | 34.021 | 97 | 59 | 2 | 5 | 101 | 11 | 102 | 9.80e-12 | 61.2 |
Find 33 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAATAGCACTTGTTTCTT+TGG | 0.198258 | 5_1:+54757863 | Msa0737520:CDS |
| TTCTTTCTAGCAAGTATTAA+AGG | 0.201526 | 5_1:+54758796 | Msa0737520:three_prime_UTR |
| GTGGCTCAAGGTGTTCAAAA+AGG | 0.328949 | 5_1:+54758406 | Msa0737520:CDS |
| CAAAGTCATTCTCAAAATAA+TGG | 0.344213 | 5_1:+54758208 | Msa0737520:CDS |
| AATCTATTGTAAAGATTTAG+TGG | 0.351020 | 5_1:+54758387 | Msa0737520:CDS |
| GGCTCCTATGCTCTTGGCCT+TGG | 0.379325 | 5_1:-54758100 | None:intergenic |
| TTCTCGTACACTTTAAGATA+TGG | 0.384569 | 5_1:+54757799 | Msa0737520:exon |
| ACACTTTAAGATATGGCAAT+TGG | 0.385251 | 5_1:+54757806 | Msa0737520:exon |
| TCTTTCTAGCAAGTATTAAA+GGG | 0.405096 | 5_1:+54758797 | Msa0737520:three_prime_UTR |
| AGATATGGCAATTGGAATCA+TGG | 0.434050 | 5_1:+54757814 | Msa0737520:exon |
| CAATCTCTCCACGATAAGAT+TGG | 0.475600 | 5_1:-54758474 | None:intergenic |
| GTAGAGGCAGAAATCATGTA+TGG | 0.482652 | 5_1:+54758135 | Msa0737520:CDS |
| CAAAGAAACAAGTGCTATTG+AGG | 0.483426 | 5_1:-54757862 | None:intergenic |
| GTACATCTTGTGAAAGCAAA+AGG | 0.483814 | 5_1:+54757839 | Msa0737520:CDS |
| TTGGTATTGTATCAAAACAT+AGG | 0.496228 | 5_1:-54758081 | None:intergenic |
| CTATGTTAATATAGGTGGAA+TGG | 0.512401 | 5_1:+54758052 | Msa0737520:intron |
| CTACACGGCTCCTATGCTCT+TGG | 0.513572 | 5_1:-54758106 | None:intergenic |
| TGCCTCTACCTTTAGCTACA+CGG | 0.514353 | 5_1:-54758121 | None:intergenic |
| AATTCATTCACAGGTGGAAG+AGG | 0.517863 | 5_1:+54758632 | Msa0737520:intron |
| CATAGGAGCCGTGTAGCTAA+AGG | 0.523517 | 5_1:+54758113 | Msa0737520:CDS |
| TTGAAGAAGACATAGGAGGA+TGG | 0.550578 | 5_1:+54758661 | Msa0737520:CDS |
| TGGTATTGTATCAAAACATA+GGG | 0.550960 | 5_1:-54758080 | None:intergenic |
| GATAAATGTATGTTGTTACA+TGG | 0.553610 | 5_1:+54758819 | Msa0737520:three_prime_UTR |
| AGCCGTGTAGCTAAAGGTAG+AGG | 0.558206 | 5_1:+54758119 | Msa0737520:CDS |
| TGTAAAGATTTAGTGGCTCA+AGG | 0.560595 | 5_1:+54758394 | Msa0737520:CDS |
| GAATTAATTGAAGAAGACAT+AGG | 0.564791 | 5_1:+54758654 | Msa0737520:CDS |
| AATACCAAGGCCAAGAGCAT+AGG | 0.592231 | 5_1:+54758096 | Msa0737520:CDS |
| CGAACAACTCTATACTTGAG+AGG | 0.601631 | 5_1:-54758445 | None:intergenic |
| TAGAGGCAGAAATCATGTAT+GGG | 0.615533 | 5_1:+54758136 | Msa0737520:CDS |
| TTAATTGAAGAAGACATAGG+AGG | 0.621683 | 5_1:+54758657 | Msa0737520:CDS |
| ATGTTCAAAGTAGAAAACAA+TGG | 0.628110 | 5_1:+54758170 | Msa0737520:CDS |
| CGTGCAGACCAATCTTATCG+TGG | 0.690565 | 5_1:+54758466 | Msa0737520:CDS |
| ACAACTCTATACTTGAGAGG+TGG | 0.693150 | 5_1:-54758442 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTTTAAAAAAAATGAT+TGG | + | chr5_1:54757935-54757954 | Msa0737520:intron | 10.0% |
| !! | ATATATTAATTAATTACCTT+TGG | - | chr5_1:54758520-54758539 | None:intergenic | 10.0% |
| !!! | TTTTCTTTAAAAAAAATGAT+TGG | + | chr5_1:54757935-54757954 | Msa0737520:intron | 10.0% |
| !! | ATATATTAATTAATTACCTT+TGG | - | chr5_1:54758520-54758539 | None:intergenic | 10.0% |
| !!! | TATTTCTACTATGTTAATAT+AGG | + | chr5_1:54758044-54758063 | Msa0737520:intron | 15.0% |
| !!! | TATTTCTACTATGTTAATAT+AGG | + | chr5_1:54758044-54758063 | Msa0737520:intron | 15.0% |
| !!! | TTTTTTGAATTTGAATCTTC+AGG | + | chr5_1:54757756-54757775 | Msa0737520:five_prime_UTR | 20.0% |
| !!! | TTTTTGAATTTGAATCTTCA+GGG | + | chr5_1:54757757-54757776 | Msa0737520:five_prime_UTR | 20.0% |
| !! | TATTGTTAGGAATATATATG+TGG | - | chr5_1:54758293-54758312 | None:intergenic | 20.0% |
| !! | AAAAATGAGACATTATTGTT+AGG | - | chr5_1:54758306-54758325 | None:intergenic | 20.0% |
| !! | TTTACAATAGATTCTGTTTA+AGG | - | chr5_1:54758380-54758399 | None:intergenic | 20.0% |
| !! | AATCTATTGTAAAGATTTAG+TGG | + | chr5_1:54758387-54758406 | Msa0737520:CDS | 20.0% |
| !!! | TTCACATTTCATTTTTGTTA+AGG | + | chr5_1:54758539-54758558 | Msa0737520:intron | 20.0% |
| !! | CATGTAACAATATATAGTTA+TGG | + | chr5_1:54758562-54758581 | Msa0737520:intron | 20.0% |
| !!! | AGTTGATTATTTTTCTTTGT+TGG | + | chr5_1:54758609-54758628 | Msa0737520:intron | 20.0% |
| !!! | AACTACTTTTAGTTTACAAA+TGG | - | chr5_1:54758727-54758746 | None:intergenic | 20.0% |
| !!! | TTTTTTGAATTTGAATCTTC+AGG | + | chr5_1:54757756-54757775 | Msa0737520:five_prime_UTR | 20.0% |
| !!! | TTTTTGAATTTGAATCTTCA+GGG | + | chr5_1:54757757-54757776 | Msa0737520:five_prime_UTR | 20.0% |
| !! | TATTGTTAGGAATATATATG+TGG | - | chr5_1:54758293-54758312 | None:intergenic | 20.0% |
| !! | AAAAATGAGACATTATTGTT+AGG | - | chr5_1:54758306-54758325 | None:intergenic | 20.0% |
| !! | TTTACAATAGATTCTGTTTA+AGG | - | chr5_1:54758380-54758399 | None:intergenic | 20.0% |
| !! | AATCTATTGTAAAGATTTAG+TGG | + | chr5_1:54758387-54758406 | Msa0737520:CDS | 20.0% |
| !!! | TTCACATTTCATTTTTGTTA+AGG | + | chr5_1:54758539-54758558 | Msa0737520:intron | 20.0% |
| !! | CATGTAACAATATATAGTTA+TGG | + | chr5_1:54758562-54758581 | Msa0737520:intron | 20.0% |
| !!! | AGTTGATTATTTTTCTTTGT+TGG | + | chr5_1:54758609-54758628 | Msa0737520:intron | 20.0% |
| !!! | AACTACTTTTAGTTTACAAA+TGG | - | chr5_1:54758727-54758746 | None:intergenic | 20.0% |
| ! | TTCTACTATGTTAATATAGG+TGG | + | chr5_1:54758047-54758066 | Msa0737520:intron | 25.0% |
| ! | TGGTATTGTATCAAAACATA+GGG | - | chr5_1:54758083-54758102 | None:intergenic | 25.0% |
| ! | TTGGTATTGTATCAAAACAT+AGG | - | chr5_1:54758084-54758103 | None:intergenic | 25.0% |
| !!! | TATGTTTTGATACAATACCA+AGG | + | chr5_1:54758083-54758102 | Msa0737520:CDS | 25.0% |
| ! | ATGTTCAAAGTAGAAAACAA+TGG | + | chr5_1:54758170-54758189 | Msa0737520:CDS | 25.0% |
| ! | CAAAGTCATTCTCAAAATAA+TGG | + | chr5_1:54758208-54758227 | Msa0737520:CDS | 25.0% |
| ! | GAATTAATTGAAGAAGACAT+AGG | + | chr5_1:54758654-54758673 | Msa0737520:CDS | 25.0% |
| !! | TTCTTTCTAGCAAGTATTAA+AGG | + | chr5_1:54758796-54758815 | Msa0737520:three_prime_UTR | 25.0% |
| !! | TCTTTCTAGCAAGTATTAAA+GGG | + | chr5_1:54758797-54758816 | Msa0737520:three_prime_UTR | 25.0% |
| ! | GATAAATGTATGTTGTTACA+TGG | + | chr5_1:54758819-54758838 | Msa0737520:three_prime_UTR | 25.0% |
| ! | TTCTACTATGTTAATATAGG+TGG | + | chr5_1:54758047-54758066 | Msa0737520:intron | 25.0% |
| ! | TGGTATTGTATCAAAACATA+GGG | - | chr5_1:54758083-54758102 | None:intergenic | 25.0% |
| ! | TTGGTATTGTATCAAAACAT+AGG | - | chr5_1:54758084-54758103 | None:intergenic | 25.0% |
| !!! | TATGTTTTGATACAATACCA+AGG | + | chr5_1:54758083-54758102 | Msa0737520:CDS | 25.0% |
| ! | ATGTTCAAAGTAGAAAACAA+TGG | + | chr5_1:54758170-54758189 | Msa0737520:CDS | 25.0% |
| ! | CAAAGTCATTCTCAAAATAA+TGG | + | chr5_1:54758208-54758227 | Msa0737520:CDS | 25.0% |
| ! | GAATTAATTGAAGAAGACAT+AGG | + | chr5_1:54758654-54758673 | Msa0737520:CDS | 25.0% |
| !! | TTCTTTCTAGCAAGTATTAA+AGG | + | chr5_1:54758796-54758815 | Msa0737520:three_prime_UTR | 25.0% |
| !! | TCTTTCTAGCAAGTATTAAA+GGG | + | chr5_1:54758797-54758816 | Msa0737520:three_prime_UTR | 25.0% |
| ! | GATAAATGTATGTTGTTACA+TGG | + | chr5_1:54758819-54758838 | Msa0737520:three_prime_UTR | 25.0% |
| !! | TTCTCGTACACTTTAAGATA+TGG | + | chr5_1:54757799-54757818 | Msa0737520:exon | 30.0% |
| !! | ACACTTTAAGATATGGCAAT+TGG | + | chr5_1:54757806-54757825 | Msa0737520:exon | 30.0% |
| CAAGAAAAAAAATGAACGTC+GGG | - | chr5_1:54757908-54757927 | None:intergenic | 30.0% | |
| CCAAGAAAAAAAATGAACGT+CGG | - | chr5_1:54757909-54757928 | None:intergenic | 30.0% | |
| TTGTTGATCCAATTCTAACA+AGG | + | chr5_1:54757995-54758014 | Msa0737520:intron | 30.0% | |
| CTATGTTAATATAGGTGGAA+TGG | + | chr5_1:54758052-54758071 | Msa0737520:intron | 30.0% | |
| GTTAGGAATATATATGTGGA+AGG | - | chr5_1:54758289-54758308 | None:intergenic | 30.0% | |
| !! | TGCTATTACTTTTACTCCAA+AGG | + | chr5_1:54758501-54758520 | Msa0737520:CDS | 30.0% |
| TTAATTGAAGAAGACATAGG+AGG | + | chr5_1:54758657-54758676 | Msa0737520:CDS | 30.0% | |
| AAAAACAACAAGCATTCTAG+AGG | - | chr5_1:54758847-54758866 | None:intergenic | 30.0% | |
| !! | TTCTCGTACACTTTAAGATA+TGG | + | chr5_1:54757799-54757818 | Msa0737520:exon | 30.0% |
| !! | ACACTTTAAGATATGGCAAT+TGG | + | chr5_1:54757806-54757825 | Msa0737520:exon | 30.0% |
| CAAGAAAAAAAATGAACGTC+GGG | - | chr5_1:54757908-54757927 | None:intergenic | 30.0% | |
| CCAAGAAAAAAAATGAACGT+CGG | - | chr5_1:54757909-54757928 | None:intergenic | 30.0% | |
| TTGTTGATCCAATTCTAACA+AGG | + | chr5_1:54757995-54758014 | Msa0737520:intron | 30.0% | |
| CTATGTTAATATAGGTGGAA+TGG | + | chr5_1:54758052-54758071 | Msa0737520:intron | 30.0% | |
| GTTAGGAATATATATGTGGA+AGG | - | chr5_1:54758289-54758308 | None:intergenic | 30.0% | |
| !! | TGCTATTACTTTTACTCCAA+AGG | + | chr5_1:54758501-54758520 | Msa0737520:CDS | 30.0% |
| TTAATTGAAGAAGACATAGG+AGG | + | chr5_1:54758657-54758676 | Msa0737520:CDS | 30.0% | |
| AAAAACAACAAGCATTCTAG+AGG | - | chr5_1:54758847-54758866 | None:intergenic | 30.0% | |
| AGATATGGCAATTGGAATCA+TGG | + | chr5_1:54757814-54757833 | Msa0737520:exon | 35.0% | |
| GTACATCTTGTGAAAGCAAA+AGG | + | chr5_1:54757839-54757858 | Msa0737520:CDS | 35.0% | |
| ! | CAAAGAAACAAGTGCTATTG+AGG | - | chr5_1:54757865-54757884 | None:intergenic | 35.0% |
| ! | CTCAATAGCACTTGTTTCTT+TGG | + | chr5_1:54757863-54757882 | Msa0737520:CDS | 35.0% |
| !!! | CCGACGTTCATTTTTTTTCT+TGG | + | chr5_1:54757906-54757925 | Msa0737520:intron | 35.0% |
| !! | ATACCAAGCCTTGTTAGAAT+TGG | - | chr5_1:54758006-54758025 | None:intergenic | 35.0% |
| TAGAGGCAGAAATCATGTAT+GGG | + | chr5_1:54758136-54758155 | Msa0737520:CDS | 35.0% | |
| ! | TTTTCTGCTGATGACTTCAT+TGG | + | chr5_1:54758242-54758261 | Msa0737520:CDS | 35.0% |
| TGTAAAGATTTAGTGGCTCA+AGG | + | chr5_1:54758394-54758413 | Msa0737520:CDS | 35.0% | |
| CTTTGTTGGAATTCATTCAC+AGG | + | chr5_1:54758623-54758642 | Msa0737520:intron | 35.0% | |
| AGATATGGCAATTGGAATCA+TGG | + | chr5_1:54757814-54757833 | Msa0737520:exon | 35.0% | |
| GTACATCTTGTGAAAGCAAA+AGG | + | chr5_1:54757839-54757858 | Msa0737520:CDS | 35.0% | |
| ! | CAAAGAAACAAGTGCTATTG+AGG | - | chr5_1:54757865-54757884 | None:intergenic | 35.0% |
| ! | CTCAATAGCACTTGTTTCTT+TGG | + | chr5_1:54757863-54757882 | Msa0737520:CDS | 35.0% |
| !!! | CCGACGTTCATTTTTTTTCT+TGG | + | chr5_1:54757906-54757925 | Msa0737520:intron | 35.0% |
| !! | ATACCAAGCCTTGTTAGAAT+TGG | - | chr5_1:54758006-54758025 | None:intergenic | 35.0% |
| TAGAGGCAGAAATCATGTAT+GGG | + | chr5_1:54758136-54758155 | Msa0737520:CDS | 35.0% | |
| ! | TTTTCTGCTGATGACTTCAT+TGG | + | chr5_1:54758242-54758261 | Msa0737520:CDS | 35.0% |
| TGTAAAGATTTAGTGGCTCA+AGG | + | chr5_1:54758394-54758413 | Msa0737520:CDS | 35.0% | |
| CTTTGTTGGAATTCATTCAC+AGG | + | chr5_1:54758623-54758642 | Msa0737520:intron | 35.0% | |
| AAAAAATGAACGTCGGGCAA+AGG | - | chr5_1:54757902-54757921 | None:intergenic | 40.0% | |
| GATCCAATTCTAACAAGGCT+TGG | + | chr5_1:54758000-54758019 | Msa0737520:intron | 40.0% | |
| GTAGAGGCAGAAATCATGTA+TGG | + | chr5_1:54758135-54758154 | Msa0737520:CDS | 40.0% | |
| ACAACTCTATACTTGAGAGG+TGG | - | chr5_1:54758445-54758464 | None:intergenic | 40.0% | |
| CGAACAACTCTATACTTGAG+AGG | - | chr5_1:54758448-54758467 | None:intergenic | 40.0% | |
| CAATCTCTCCACGATAAGAT+TGG | - | chr5_1:54758477-54758496 | None:intergenic | 40.0% | |
| TGTTGGAATTCATTCACAGG+TGG | + | chr5_1:54758626-54758645 | Msa0737520:intron | 40.0% | |
| AATTCATTCACAGGTGGAAG+AGG | + | chr5_1:54758632-54758651 | Msa0737520:intron | 40.0% | |
| TTGAAGAAGACATAGGAGGA+TGG | + | chr5_1:54758661-54758680 | Msa0737520:CDS | 40.0% | |
| AAAAAATGAACGTCGGGCAA+AGG | - | chr5_1:54757902-54757921 | None:intergenic | 40.0% | |
| GATCCAATTCTAACAAGGCT+TGG | + | chr5_1:54758000-54758019 | Msa0737520:intron | 40.0% | |
| GTAGAGGCAGAAATCATGTA+TGG | + | chr5_1:54758135-54758154 | Msa0737520:CDS | 40.0% | |
| ACAACTCTATACTTGAGAGG+TGG | - | chr5_1:54758445-54758464 | None:intergenic | 40.0% | |
| CGAACAACTCTATACTTGAG+AGG | - | chr5_1:54758448-54758467 | None:intergenic | 40.0% | |
| CAATCTCTCCACGATAAGAT+TGG | - | chr5_1:54758477-54758496 | None:intergenic | 40.0% | |
| TGTTGGAATTCATTCACAGG+TGG | + | chr5_1:54758626-54758645 | Msa0737520:intron | 40.0% | |
| AATTCATTCACAGGTGGAAG+AGG | + | chr5_1:54758632-54758651 | Msa0737520:intron | 40.0% | |
| TTGAAGAAGACATAGGAGGA+TGG | + | chr5_1:54758661-54758680 | Msa0737520:CDS | 40.0% | |
| ! | AATACCAAGGCCAAGAGCAT+AGG | + | chr5_1:54758096-54758115 | Msa0737520:CDS | 45.0% |
| TGCCTCTACCTTTAGCTACA+CGG | - | chr5_1:54758124-54758143 | None:intergenic | 45.0% | |
| !! | TGGAAGGCATTAGTCTTACG+TGG | - | chr5_1:54758273-54758292 | None:intergenic | 45.0% |
| ! | GTGGCTCAAGGTGTTCAAAA+AGG | + | chr5_1:54758406-54758425 | Msa0737520:CDS | 45.0% |
| ! | AATACCAAGGCCAAGAGCAT+AGG | + | chr5_1:54758096-54758115 | Msa0737520:CDS | 45.0% |
| TGCCTCTACCTTTAGCTACA+CGG | - | chr5_1:54758124-54758143 | None:intergenic | 45.0% | |
| !! | TGGAAGGCATTAGTCTTACG+TGG | - | chr5_1:54758273-54758292 | None:intergenic | 45.0% |
| ! | GTGGCTCAAGGTGTTCAAAA+AGG | + | chr5_1:54758406-54758425 | Msa0737520:CDS | 45.0% |
| !! | AAATAATTAATATATACATA+AGG | - | chr5_1:54758029-54758048 | None:intergenic | 5.0% |
| !! | AAATAATTAATATATACATA+AGG | - | chr5_1:54758029-54758048 | None:intergenic | 5.0% |
| CATAGGAGCCGTGTAGCTAA+AGG | + | chr5_1:54758113-54758132 | Msa0737520:CDS | 50.0% | |
| AGCCGTGTAGCTAAAGGTAG+AGG | + | chr5_1:54758119-54758138 | Msa0737520:CDS | 50.0% | |
| CGTGCAGACCAATCTTATCG+TGG | + | chr5_1:54758466-54758485 | Msa0737520:CDS | 50.0% | |
| CATAGGAGCCGTGTAGCTAA+AGG | + | chr5_1:54758113-54758132 | Msa0737520:CDS | 50.0% | |
| AGCCGTGTAGCTAAAGGTAG+AGG | + | chr5_1:54758119-54758138 | Msa0737520:CDS | 50.0% | |
| CGTGCAGACCAATCTTATCG+TGG | + | chr5_1:54758466-54758485 | Msa0737520:CDS | 50.0% | |
| CTACACGGCTCCTATGCTCT+TGG | - | chr5_1:54758109-54758128 | None:intergenic | 55.0% | |
| CTACACGGCTCCTATGCTCT+TGG | - | chr5_1:54758109-54758128 | None:intergenic | 55.0% | |
| GGCTCCTATGCTCTTGGCCT+TGG | - | chr5_1:54758103-54758122 | None:intergenic | 60.0% | |
| GGCTCCTATGCTCTTGGCCT+TGG | - | chr5_1:54758103-54758122 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 54757728 | 54758920 | 54757728 | ID=Msa0737520;Name=Msa0737520 |
| chr5_1 | mRNA | 54757728 | 54758920 | 54757728 | ID=Msa0737520-mRNA-1;Parent=Msa0737520;Name=Msa0737520-mRNA-1;_AED=0.04;_eAED=0.04;_QI=90|1|1|1|1|1|4|213|157 |
| chr5_1 | exon | 54757728 | 54757884 | 54757728 | ID=Msa0737520-mRNA-1:exon:15349;Parent=Msa0737520-mRNA-1 |
| chr5_1 | exon | 54758066 | 54758273 | 54758066 | ID=Msa0737520-mRNA-1:exon:15350;Parent=Msa0737520-mRNA-1 |
| chr5_1 | exon | 54758387 | 54758522 | 54758387 | ID=Msa0737520-mRNA-1:exon:15351;Parent=Msa0737520-mRNA-1 |
| chr5_1 | exon | 54758645 | 54758920 | 54758645 | ID=Msa0737520-mRNA-1:exon:15352;Parent=Msa0737520-mRNA-1 |
| chr5_1 | five_prime_UTR | 54757728 | 54757817 | 54757728 | ID=Msa0737520-mRNA-1:five_prime_utr;Parent=Msa0737520-mRNA-1 |
| chr5_1 | CDS | 54757818 | 54757884 | 54757818 | ID=Msa0737520-mRNA-1:cds;Parent=Msa0737520-mRNA-1 |
| chr5_1 | CDS | 54758066 | 54758273 | 54758066 | ID=Msa0737520-mRNA-1:cds;Parent=Msa0737520-mRNA-1 |
| chr5_1 | CDS | 54758387 | 54758522 | 54758387 | ID=Msa0737520-mRNA-1:cds;Parent=Msa0737520-mRNA-1 |
| chr5_1 | CDS | 54758645 | 54758707 | 54758645 | ID=Msa0737520-mRNA-1:cds;Parent=Msa0737520-mRNA-1 |
| chr5_1 | three_prime_UTR | 54758708 | 54758920 | 54758708 | ID=Msa0737520-mRNA-1:three_prime_utr;Parent=Msa0737520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
