AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0782780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0782780 MtrunA17_Chr5g0440341 99.017 407 4 0 1 407 1 407 0.0 841
Msa0782780 MtrunA17_Chr7g0254001 72.441 381 104 1 26 406 13 392 0.0 549
Msa0782780 MtrunA17_Chr7g0259501 58.901 382 144 6 30 406 36 409 1.06e-158 453
Msa0782780 MtrunA17_Chr1g0185861 58.005 381 147 6 31 406 41 413 2.50e-152 437
Msa0782780 MtrunA17_Chr4g0002921 76.374 182 43 0 29 210 23 204 1.69e-100 303
Msa0782780 MtrunA17_Chr3g0112351 42.697 89 48 1 251 339 6 91 1.68e-17 77.8
Msa0782780 MtrunA17_Chr5g0394261 31.447 159 88 5 183 339 521 660 3.30e-14 74.7
Msa0782780 MtrunA17_Chr7g0259851 27.473 182 101 6 183 362 511 663 7.79e-14 73.6
Msa0782780 MtrunA17_Chr1g0205751 30.818 159 89 5 183 339 524 663 1.64e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0782780 AT3G03740.1 71.139 395 108 3 12 404 31 421 0.0 574
Msa0782780 AT5G21010.1 68.672 399 120 3 13 406 10 408 0.0 558
Msa0782780 AT3G43700.1 66.015 409 136 1 1 406 5 413 0.0 550
Msa0782780 AT3G43700.2 66.193 352 116 1 1 349 5 356 5.80e-174 490
Msa0782780 AT3G43700.3 66.954 348 112 1 1 345 5 352 3.31e-173 488
Msa0782780 AT3G06190.1 55.746 409 170 5 2 406 3 404 4.69e-157 449
Msa0782780 AT5G19000.1 56.430 381 155 5 30 406 32 405 6.23e-149 428
Msa0782780 AT5G19000.3 56.430 381 155 5 30 406 32 405 6.23e-149 428
Msa0782780 AT2G39760.1 54.615 390 169 5 21 406 14 399 3.94e-148 426
Msa0782780 AT5G19000.2 51.683 416 155 6 30 406 32 440 1.29e-141 411
Msa0782780 AT3G06190.5 58.529 340 135 3 2 339 3 338 3.18e-140 404
Msa0782780 AT2G39760.4 57.453 322 133 2 21 341 14 332 3.64e-133 386
Msa0782780 AT2G39760.3 57.453 322 133 2 21 341 14 332 3.64e-133 386
Msa0782780 AT2G39760.2 57.453 322 133 2 21 341 14 332 6.01e-133 385
Msa0782780 AT3G06190.4 61.961 255 96 1 2 255 3 257 3.55e-109 323
Msa0782780 AT3G06190.3 61.961 255 96 1 2 255 3 257 3.81e-109 323
Msa0782780 AT3G06190.2 59.770 261 103 1 2 260 3 263 3.96e-108 320
Msa0782780 AT5G19330.1 31.088 193 105 7 195 385 535 701 2.61e-16 81.6
Msa0782780 AT5G13060.1 28.571 175 106 4 194 365 561 719 8.28e-13 70.9
Msa0782780 AT3G56230.1 28.834 163 101 4 209 369 121 270 5.17e-11 63.5

Find 134 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATGGCGGTTGTTTATTT+AGG 0.177620 5_2:-66107258 None:intergenic
ACACTAATGTTTGCAGAATT+AGG 0.238047 5_2:+66112045 Msa0782780:three_prime_UTR
GCTCTTCTGCAATATACTTT+TGG 0.256516 5_2:+66111927 Msa0782780:three_prime_UTR
TCCTTATACCTTGAAATATA+AGG 0.259361 5_2:+66107653 Msa0782780:CDS
CCCTTATATTTCAAGGTATA+AGG 0.262839 5_2:-66107654 None:intergenic
TCATGGCGGTTGTTTATTTA+GGG 0.277292 5_2:-66107257 None:intergenic
TGTCGGAGATGATGCGTTTC+CGG 0.295840 5_2:-66107280 None:intergenic
GCTATCAATGTCTCCGAAAC+TGG 0.297355 5_2:-66109641 None:intergenic
ATCACACTTTGGTGCACTAT+TGG 0.301896 5_2:+66109156 Msa0782780:CDS
GGATAATTCTGCGTATGTTT+CGG 0.314889 5_2:+66107506 Msa0782780:CDS
TAGTTCATGTTTAAGTTAGA+AGG 0.341902 5_2:+66112196 Msa0782780:three_prime_UTR
GAATTGGGGAAGAAGTGTTT+TGG 0.345004 5_2:-66107198 None:intergenic
TTATCGAGCGCGAGATCGTT+GGG 0.358029 5_2:-66107332 None:intergenic
TGACCTCCAGTTCAAAAGTA+TGG 0.358383 5_2:-66111967 None:intergenic
CAGAATTAGGTTCAATAGAA+TGG 0.379209 5_2:+66112058 Msa0782780:three_prime_UTR
TACTCGCTCGCGAAGGGAAT+GGG 0.383641 5_2:+66107396 Msa0782780:CDS
CATGCTACCCTTATATTTCA+AGG 0.389146 5_2:-66107661 None:intergenic
GAGATCTTGAAGACAGTTGC+TGG 0.421772 5_2:+66111562 Msa0782780:CDS
TCCTCCGGATTCTTCCCATC+AGG 0.423302 5_2:-66107486 None:intergenic
TCGATAACGCAAACGGTTAA+CGG 0.437798 5_2:+66107348 Msa0782780:CDS
TCAGATGGCGGTGACACAAT+TGG 0.439482 5_2:+66111643 Msa0782780:CDS
AGTGATAATGTTGAAAGAAT+GGG 0.442867 5_2:+66111740 Msa0782780:three_prime_UTR
AGATGATGCGTTTCCGGTCA+TGG 0.446701 5_2:-66107274 None:intergenic
CTATTGAAACATAGAGAAGT+TGG 0.449354 5_2:-66111802 None:intergenic
GTGGCTGGGGAGAAGTTTCC+TGG 0.449811 5_2:+66109211 Msa0782780:CDS
GGTATTTATGTGTTGAAAGA+TGG 0.451381 5_2:+66112231 Msa0782780:three_prime_UTR
TTTCAAGAGAGCGATCAAAA+TGG 0.451722 5_2:-66107626 None:intergenic
CCATGTCCACCTCTTCTGTA+AGG 0.453653 5_2:-66109592 None:intergenic
CCTTATACCTTGAAATATAA+GGG 0.454581 5_2:+66107654 Msa0782780:CDS
GTCACCGCCATCTGAAAGTT+GGG 0.456305 5_2:-66111635 None:intergenic
GCTTGTTGATCAGAGTGGTC+AGG 0.473140 5_2:+66107584 Msa0782780:CDS
CCTTCGCGAGCGAGTACCCT+TGG 0.474161 5_2:-66107389 None:intergenic
GAGGGTGATAGTTGCAGTAC+AGG 0.482747 5_2:+66111589 Msa0782780:CDS
TCCTGGTCATAAGTTGGTGT+TGG 0.483144 5_2:+66109228 Msa0782780:CDS
TGTCACCGCCATCTGAAAGT+TGG 0.487643 5_2:-66111636 None:intergenic
CTCGCGAAGGGAATGGGAGT+TGG 0.488059 5_2:+66107402 Msa0782780:CDS
TGTTTGAACAAAGGATATCA+AGG 0.491503 5_2:-66112025 None:intergenic
TGTGATCCAATGTCAGACTC+TGG 0.495565 5_2:-66109139 None:intergenic
TTTGATCGCTCTCTTGAAAG+TGG 0.498995 5_2:+66107630 Msa0782780:CDS
GTACTCGCTCGCGAAGGGAA+TGG 0.499540 5_2:+66107395 Msa0782780:CDS
AAGTGATAATGTTGAAAGAA+TGG 0.501300 5_2:+66111739 Msa0782780:three_prime_UTR
GAGGATAACGGCGCCGGTGA+CGG 0.502952 5_2:-66107309 None:intergenic
AAATAAACAACCGCCATGAC+CGG 0.506651 5_2:+66107261 Msa0782780:exon
CTACCCTGATGGGAAGAATC+CGG 0.506877 5_2:+66107482 Msa0782780:CDS
CAACTGTACAGTTGGAGTTG+TGG 0.508711 5_2:+66109075 Msa0782780:CDS
TCGCACAAATTCTTGATCCA+AGG 0.511740 5_2:+66107372 Msa0782780:CDS
AAGACAGTTGCTGGCTGTGA+GGG 0.511783 5_2:+66111571 Msa0782780:CDS
GCGATCTACTTCTACCCTGA+TGG 0.515761 5_2:+66107471 Msa0782780:CDS
TTGAAAATCAACTGTACAGT+TGG 0.516183 5_2:+66109067 Msa0782780:CDS
GTTATCGAGCGCGAGATCGT+TGG 0.516701 5_2:-66107333 None:intergenic
TTCATCGCGTTGGCGAGTGA+AGG 0.518184 5_2:+66107531 Msa0782780:CDS
GAGTGGTCAGGGGAAGCATA+AGG 0.519043 5_2:+66107596 Msa0782780:CDS
TTCAAAAGTATGGATGGACT+TGG 0.519941 5_2:-66111957 None:intergenic
GAAAGAATGGGGATAGGAAA+AGG 0.520832 5_2:+66111752 Msa0782780:three_prime_UTR
AGGTAGACTAGATGCTATGC+AGG 0.523812 5_2:+66111844 Msa0782780:three_prime_UTR
TCCGACACCATCTCCGTCAC+CGG 0.525944 5_2:+66107296 Msa0782780:CDS
AAGATCTCTGACTGTAGCCA+TGG 0.528447 5_2:-66111547 None:intergenic
TGATATCTGTTGTCTCGCAT+TGG 0.528821 5_2:+66111688 Msa0782780:exon
TTAACTCTGTGGCATGGCAA+TGG 0.529102 5_2:-66109781 None:intergenic
GAGATCGTTGGGGAGGATAA+CGG 0.531477 5_2:-66107321 None:intergenic
CCTTACAGAAGAGGTGGACA+TGG 0.531958 5_2:+66109592 Msa0782780:CDS
GAAGTTTCCTGGTCATAAGT+TGG 0.536194 5_2:+66109222 Msa0782780:CDS
CTTGTTGATCAGAGTGGTCA+GGG 0.537245 5_2:+66107585 Msa0782780:CDS
CTCCAGTTCAAAAGTATGGA+TGG 0.538569 5_2:-66111963 None:intergenic
CGCGTTGGCGAGTGAAGGAA+CGG 0.541562 5_2:+66107536 Msa0782780:CDS
GGTTATGTAAATGTCTCCGA+TGG 0.544256 5_2:+66111865 Msa0782780:three_prime_UTR
ATATCAAGGGACAAAGCAGT+TGG 0.547104 5_2:-66112011 None:intergenic
GCACTATTGGAGAATAATGA+AGG 0.550810 5_2:+66109169 Msa0782780:CDS
TCTGACATTGGATCACACTT+TGG 0.551975 5_2:+66109145 Msa0782780:CDS
CCTCCGGATTCTTCCCATCA+GGG 0.552763 5_2:-66107485 None:intergenic
TTTGCTTCTCAAAATCTAGC+CGG 0.554738 5_2:+66109821 Msa0782780:CDS
CGCACAAATTCTTGATCCAA+GGG 0.554858 5_2:+66107373 Msa0782780:CDS
AGGGTGATAGTTGCAGTACA+GGG 0.557225 5_2:+66111590 Msa0782780:CDS
TCTCGTCTTTGCAAGGACAT+TGG 0.559559 5_2:+66109722 Msa0782780:CDS
CGATCTACTTCTACCCTGAT+GGG 0.559726 5_2:+66107472 Msa0782780:CDS
TTAGCTGCAGCAGACAAGTA+CGG 0.561289 5_2:+66109671 Msa0782780:CDS
CATGTCCCAGAGTCTGACAT+TGG 0.563872 5_2:+66109133 Msa0782780:CDS
TCACCGTCGGAGGGTATCAG+TGG 0.564407 5_2:+66107448 Msa0782780:CDS
CTCGCGCTCGATAACGCAAA+CGG 0.564722 5_2:+66107341 Msa0782780:CDS
TGCAGCAGACAAGTACGGCT+TGG 0.565393 5_2:+66109676 Msa0782780:CDS
GTCAGCCAAGGTCAAAATGT+TGG 0.566131 5_2:-66109759 None:intergenic
TGTGTTGAAAGATGGCAGAA+TGG 0.567639 5_2:+66112239 Msa0782780:three_prime_UTR
TGAAACATAGAGAAGTTGGC+AGG 0.568743 5_2:-66111798 None:intergenic
GTGATAATGTTGAAAGAATG+GGG 0.569071 5_2:+66111741 Msa0782780:three_prime_UTR
AACTTAAACATGAACTAATG+AGG 0.571058 5_2:-66112190 None:intergenic
AATGTTGAAAGAATGGGGAT+AGG 0.571394 5_2:+66111746 Msa0782780:three_prime_UTR
CAGAGATTCCCTTACAGAAG+AGG 0.571846 5_2:+66109583 Msa0782780:CDS
GTTGGGGAGGATAACGGCGC+CGG 0.572963 5_2:-66107315 None:intergenic
ATGGCGGTGACACAATTGGC+AGG 0.575721 5_2:+66111647 Msa0782780:CDS
AACGGCGCCGGTGACGGAGA+TGG 0.575969 5_2:-66107303 None:intergenic
TGTGACAGATTTAGAACCAA+AGG 0.576907 5_2:+66109318 Msa0782780:CDS
GTTAGAAGGAAGCTCTAACC+AGG 0.578853 5_2:+66112210 Msa0782780:three_prime_UTR
GAAGACAGTTGCTGGCTGTG+AGG 0.579653 5_2:+66111570 Msa0782780:CDS
ATAGGAAAAGGCAAAAGAGA+AGG 0.580863 5_2:+66111764 Msa0782780:three_prime_UTR
GTGATCCAATGTCAGACTCT+GGG 0.581092 5_2:-66109138 None:intergenic
CATGTCCACCTCTTCTGTAA+GGG 0.584025 5_2:-66109591 None:intergenic
CCAAGGGTACTCGCTCGCGA+AGG 0.588173 5_2:+66107389 Msa0782780:CDS
TCTTTCAACACATAAATACC+TGG 0.589974 5_2:-66112228 None:intergenic
GTGCGAGTCTCGTCTTTGCA+AGG 0.590794 5_2:+66109715 Msa0782780:CDS
AAACATTAGTGTTTGAACAA+AGG 0.591466 5_2:-66112034 None:intergenic
AAAGTGTTAATGTTTCTGGA+TGG 0.592326 5_2:+66112152 Msa0782780:three_prime_UTR
GCCAACACCAACTTATGACC+AGG 0.592965 5_2:-66109229 None:intergenic
GTGTGGGCCCAACTTTCAGA+TGG 0.593993 5_2:+66111628 Msa0782780:CDS
GTTATGTAAATGTCTCCGAT+GGG 0.594437 5_2:+66111866 Msa0782780:three_prime_UTR
CAAGGGTACTCGCTCGCGAA+GGG 0.597917 5_2:+66107390 Msa0782780:CDS
GATGGCAGAATGGATTGTAG+TGG 0.598277 5_2:+66112249 Msa0782780:three_prime_UTR
GCCGGTGACGGAGATGGTGT+CGG 0.600474 5_2:-66107297 None:intergenic
GTTTGAACAAAGGATATCAA+GGG 0.613734 5_2:-66112024 None:intergenic
AGATCTCTGACTGTAGCCAT+GGG 0.614943 5_2:-66111546 None:intergenic
AGATTCCCTTACAGAAGAGG+TGG 0.616072 5_2:+66109586 Msa0782780:CDS
ACATGAATAGAGTTAAGCTG+TGG 0.618655 5_2:-66109115 None:intergenic
CACCGTCGGAGGGTATCAGT+GGG 0.619698 5_2:+66107449 Msa0782780:CDS
GACTTGTTGCAGCTGTCATG+AGG 0.622166 5_2:+66111491 Msa0782780:intron
TCGAAATTCTGGAGATCTAG+CGG 0.629987 5_2:-66109251 None:intergenic
GCAGCTGTCATGAGGTCGGA+TGG 0.631226 5_2:+66111499 Msa0782780:intron
TGTTGCAGCTGTCATGAGGT+CGG 0.632813 5_2:+66111495 Msa0782780:intron
GGCATGGCAATGGTCAGCCA+AGG 0.641941 5_2:-66109771 None:intergenic
CAGACAAGTACGGCTTGGAG+AGG 0.649483 5_2:+66109681 Msa0782780:CDS
ACATACGCAGAATTATCCTC+CGG 0.650784 5_2:-66107501 None:intergenic
TCTGTAGATAAAATGCAGCA+TGG 0.650987 5_2:-66109564 None:intergenic
CTAAACAACTTACACCCCAT+CGG 0.651093 5_2:-66111881 None:intergenic
CGAGCGCGAGATCGTTGGGG+AGG 0.656980 5_2:-66107328 None:intergenic
CATGAATAGAGTTAAGCTGT+GGG 0.672460 5_2:-66109114 None:intergenic
CTCACGCTTGTTGATCAGAG+TGG 0.674203 5_2:+66107579 Msa0782780:CDS
TATCGAGCGCGAGATCGTTG+GGG 0.681767 5_2:-66107331 None:intergenic
TGGCACGGATATGGACACAC+AGG 0.686971 5_2:+66109288 Msa0782780:CDS
CGCCCACTGATACCCTCCGA+CGG 0.690240 5_2:-66107451 None:intergenic
TGGGCCCAACTTTCAGATGG+CGG 0.690246 5_2:+66111631 Msa0782780:CDS
CCCTGATGGGAAGAATCCGG+AGG 0.702711 5_2:+66107485 Msa0782780:CDS
GGGTGATAGTTGCAGTACAG+GGG 0.705570 5_2:+66111591 Msa0782780:CDS
TGAAATATAAGGGTAGCATG+TGG 0.707701 5_2:+66107664 Msa0782780:CDS
TTGTTGATCAGAGTGGTCAG+GGG 0.711385 5_2:+66107586 Msa0782780:CDS
TTATGTAAATGTCTCCGATG+GGG 0.718417 5_2:+66111867 Msa0782780:three_prime_UTR
TGATGCGTTTCCGGTCATGG+CGG 0.738810 5_2:-66107271 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCAAATTTTAATTGTTTT+TGG + chr5_2:66107705-66107724 Msa0782780:intron 10.0%
!! AAAAACAATATAAATGATAA+AGG - chr5_2:66108738-66108757 None:intergenic 10.0%
!! AAGTAAAAAAAAAAAATGAA+AGG - chr5_2:66110663-66110682 None:intergenic 10.0%
!!! TAAATTATCATTGATTAAAG+TGG + chr5_2:66108802-66108821 Msa0782780:intron 15.0%
!!! TGATAAGAAAAGATTTTATT+TGG + chr5_2:66109487-66109506 Msa0782780:intron 15.0%
!!! GATAAGAAAAGATTTTATTT+GGG + chr5_2:66109488-66109507 Msa0782780:intron 15.0%
!!! ATAAGAAAAGATTTTATTTG+GGG + chr5_2:66109489-66109508 Msa0782780:intron 15.0%
!!! TTCATTATAACTTTACATTT+TGG + chr5_2:66110103-66110122 Msa0782780:intron 15.0%
!!! TCATTATAACTTTACATTTT+GGG + chr5_2:66110104-66110123 Msa0782780:intron 15.0%
!! GAAAAAGTAATGAAAATTAA+AGG - chr5_2:66110916-66110935 None:intergenic 15.0%
!!! ATCATGCATTATTAAAATTT+TGG + chr5_2:66111401-66111420 Msa0782780:intron 15.0%
!!! CAAAATGAATATTTTTTACA+AGG - chr5_2:66112092-66112111 None:intergenic 15.0%
!!! TTTAATGTTGATGATAGTTT+GGG + chr5_2:66107728-66107747 Msa0782780:intron 20.0%
!! GTATACCAAATATAACTTTA+TGG + chr5_2:66108375-66108394 Msa0782780:intron 20.0%
!! ATTCTCCATAAAGTTATATT+TGG - chr5_2:66108383-66108402 None:intergenic 20.0%
!!! TAAATGATAAAGGCATATTT+TGG - chr5_2:66108728-66108747 None:intergenic 20.0%
!!! GTTTTAAAAAATTGTGAAAG+AGG + chr5_2:66108779-66108798 Msa0782780:intron 20.0%
!! AAAAATTTAGATCGAAATTC+TGG - chr5_2:66109265-66109284 None:intergenic 20.0%
!!! TTTCGATCTAAATTTTTTGA+TGG + chr5_2:66109268-66109287 Msa0782780:CDS 20.0%
!!! TAAGAAAAGATTTTATTTGG+GGG + chr5_2:66109490-66109509 Msa0782780:intron 20.0%
!!! ATGAATCATCTTAATGTTTT+AGG - chr5_2:66110088-66110107 None:intergenic 20.0%
!!! CATTATAACTTTACATTTTG+GGG + chr5_2:66110105-66110124 Msa0782780:intron 20.0%
!! TGTTTATGTTTCATATATGT+CGG + chr5_2:66110222-66110241 Msa0782780:intron 20.0%
!!! TTTTCATTACTTGTGTTTAA+TGG - chr5_2:66110290-66110309 None:intergenic 20.0%
!! ACAAGTAATGAAAAATACAT+GGG + chr5_2:66110296-66110315 Msa0782780:intron 20.0%
!!! TTTAACTTCTTTTTTTGAAC+AGG - chr5_2:66110401-66110420 None:intergenic 20.0%
!!! AGATGTTTTTTTTCCATTTT+TGG - chr5_2:66110505-66110524 None:intergenic 20.0%
!! ATAGTAAATACTAGTAACTA+AGG - chr5_2:66110708-66110727 None:intergenic 20.0%
!!! ACTTTTCTATTTACCAAAAA+TGG + chr5_2:66110747-66110766 Msa0782780:intron 20.0%
!!! AGTAATATTATCTCCATTTT+TGG - chr5_2:66110763-66110782 None:intergenic 20.0%
!! ATCATTTGTATTCACTATTA+AGG - chr5_2:66111248-66111267 None:intergenic 20.0%
!!! TCTAAAATTTCAACACAAAA+GGG - chr5_2:66111335-66111354 None:intergenic 20.0%
!!! ATCTAAAATTTCAACACAAA+AGG - chr5_2:66111336-66111355 None:intergenic 20.0%
!!! TGTGTTGAAATTTTAGATAT+AGG + chr5_2:66111338-66111357 Msa0782780:intron 20.0%
!!! TTGAAATTTTAGATATAGGT+TGG + chr5_2:66111342-66111361 Msa0782780:intron 20.0%
!! TAATAATGCATGATTAAACA+TGG - chr5_2:66111395-66111414 None:intergenic 20.0%
!!! AAACATTAACACTTTTTATG+AGG - chr5_2:66112147-66112166 None:intergenic 20.0%
!!! ATAAAAAGTGTTAATGTTTC+TGG + chr5_2:66112148-66112167 Msa0782780:three_prime_UTR 20.0%
!!! GATTTTGAATTTGATTTTGG+GGG - chr5_2:66107238-66107257 None:intergenic 25.0%
!!! GGATTTTGAATTTGATTTTG+GGG - chr5_2:66107239-66107258 None:intergenic 25.0%
!!! GGGATTTTGAATTTGATTTT+GGG - chr5_2:66107240-66107259 None:intergenic 25.0%
!!! AGGGATTTTGAATTTGATTT+TGG - chr5_2:66107241-66107260 None:intergenic 25.0%
! TCCTTATACCTTGAAATATA+AGG + chr5_2:66107653-66107672 Msa0782780:CDS 25.0%
! CCTTATACCTTGAAATATAA+GGG + chr5_2:66107654-66107673 Msa0782780:CDS 25.0%
!!! GTTTAATGTTGATGATAGTT+TGG + chr5_2:66107727-66107746 Msa0782780:intron 25.0%
!! TTTGAATTTGATGTGAGTTT+TGG + chr5_2:66107761-66107780 Msa0782780:intron 25.0%
!! TTGAATTTGATGTGAGTTTT+GGG + chr5_2:66107762-66107781 Msa0782780:intron 25.0%
! TAATCTATAGTTTCTCTTAC+AGG - chr5_2:66108055-66108074 None:intergenic 25.0%
! GAAACTATAGATTAATGAGT+AGG + chr5_2:66108061-66108080 Msa0782780:intron 25.0%
!!! AGCAGTTTAGTTTTTTTTAG+AGG + chr5_2:66108182-66108201 Msa0782780:intron 25.0%
!! ATTACTCCTTTAAAAGAATG+TGG + chr5_2:66108253-66108272 Msa0782780:intron 25.0%
!! GATAAACCACATTCTTTTAA+AGG - chr5_2:66108262-66108281 None:intergenic 25.0%
!!! ATGTGGTTTATCTCTTTTTT+TGG + chr5_2:66108270-66108289 Msa0782780:intron 25.0%
!! ATTCACCTATGTAATGTTTT+TGG - chr5_2:66108329-66108348 None:intergenic 25.0%
! ACACCATAGATATAAAGTTA+GGG - chr5_2:66108571-66108590 None:intergenic 25.0%
! TACACCATAGATATAAAGTT+AGG - chr5_2:66108572-66108591 None:intergenic 25.0%
! TATAACCATATGATACATGA+AGG + chr5_2:66108607-66108626 Msa0782780:intron 25.0%
! TAACTAAAATTCACAGGAAA+GGG - chr5_2:66108662-66108681 None:intergenic 25.0%
!!! TCTTGTTCATTTGTTTTTGT+AGG + chr5_2:66108981-66109000 Msa0782780:intron 25.0%
!!! CTTGTTCATTTGTTTTTGTA+GGG + chr5_2:66108982-66109001 Msa0782780:intron 25.0%
!!! TTGTTCATTTGTTTTTGTAG+GGG + chr5_2:66108983-66109002 Msa0782780:intron 25.0%
!!! ATCTAAATTTTTTGATGGCA+CGG + chr5_2:66109273-66109292 Msa0782780:CDS 25.0%
!!! TTTAGAACCAAAGGTTTTTA+AGG + chr5_2:66109327-66109346 Msa0782780:CDS 25.0%
!! GTTTTTACCTTAAAAACCTT+TGG - chr5_2:66109337-66109356 None:intergenic 25.0%
! ATGAAAAGAAGATGGTAAAA+GGG - chr5_2:66109385-66109404 None:intergenic 25.0%
!!! GATTTTGAGAAGCAAATTTT+AGG - chr5_2:66109817-66109836 None:intergenic 25.0%
! AAAACAAGTGATTAGTAAGT+AGG - chr5_2:66109851-66109870 None:intergenic 25.0%
! CACAAGTAATGAAAAATACA+TGG + chr5_2:66110295-66110314 Msa0782780:intron 25.0%
!! TAAATCTTCAAAGCTTTTAC+TGG + chr5_2:66110417-66110436 Msa0782780:intron 25.0%
! GTTATGGTAATAAGTAACTA+AGG - chr5_2:66110453-66110472 None:intergenic 25.0%
! GCTTTCTTAATTACCAAAAA+TGG + chr5_2:66110489-66110508 Msa0782780:intron 25.0%
!! AAACATTTGAAACACATGAA+GGG - chr5_2:66110562-66110581 None:intergenic 25.0%
!! AAAACATTTGAAACACATGA+AGG - chr5_2:66110563-66110582 None:intergenic 25.0%
! AAGAAAACAAAATCATCCAA+CGG - chr5_2:66110638-66110657 None:intergenic 25.0%
! CAAAAACTAGAAGAGAAAAA+CGG - chr5_2:66110839-66110858 None:intergenic 25.0%
! AATGTTTCAAAATGCAAAGA+AGG - chr5_2:66111046-66111065 None:intergenic 25.0%
! GAAAGAAAATAACAAGAGAA+GGG - chr5_2:66111085-66111104 None:intergenic 25.0%
! GCAATCAATAAAAAAGAAAG+CGG - chr5_2:66111110-66111129 None:intergenic 25.0%
!!! AATTTTAGATATAGGTTGGT+TGG + chr5_2:66111346-66111365 Msa0782780:intron 25.0%
!! AAGTGATAATGTTGAAAGAA+TGG + chr5_2:66111739-66111758 Msa0782780:three_prime_UTR 25.0%
!! AGTGATAATGTTGAAAGAAT+GGG + chr5_2:66111740-66111759 Msa0782780:three_prime_UTR 25.0%
!!! GAAAGTGTTTTAGAAAAAGA+AGG + chr5_2:66111824-66111843 Msa0782780:three_prime_UTR 25.0%
! AAACATTAGTGTTTGAACAA+AGG - chr5_2:66112037-66112056 None:intergenic 25.0%
! AACTTAAACATGAACTAATG+AGG - chr5_2:66112193-66112212 None:intergenic 25.0%
!! TAGTTCATGTTTAAGTTAGA+AGG + chr5_2:66112196-66112215 Msa0782780:three_prime_UTR 25.0%
CCCTTATATTTCAAGGTATA+AGG - chr5_2:66107657-66107676 None:intergenic 30.0%
! TGAATTTGATGTGAGTTTTG+GGG + chr5_2:66107763-66107782 Msa0782780:intron 30.0%
! ATTTAAAGCATTAGAGAGAG+AGG + chr5_2:66107880-66107899 Msa0782780:intron 30.0%
! TTTAAAGCATTAGAGAGAGA+GGG + chr5_2:66107881-66107900 Msa0782780:intron 30.0%
! TTCACAGTCTTTTCTACTAT+AGG - chr5_2:66107923-66107942 None:intergenic 30.0%
AGACTGTGAAAACTATGTTT+AGG + chr5_2:66107933-66107952 Msa0782780:intron 30.0%
GCTTACCAAAAACATTACAT+AGG + chr5_2:66108321-66108340 Msa0782780:intron 30.0%
CATTACATAGGTGAATTAGA+AGG + chr5_2:66108333-66108352 Msa0782780:intron 30.0%
AGACCCTAACTTTATATCTA+TGG + chr5_2:66108565-66108584 Msa0782780:intron 30.0%
GTAACTAAAATTCACAGGAA+AGG - chr5_2:66108663-66108682 None:intergenic 30.0%
!!! TTCCTGTGAATTTTAGTTAC+TGG + chr5_2:66108663-66108682 Msa0782780:intron 30.0%
ATCCAGTAACTAAAATTCAC+AGG - chr5_2:66108668-66108687 None:intergenic 30.0%
!! TTATTTTACATCTGTCTCTG+AGG + chr5_2:66108834-66108853 Msa0782780:intron 30.0%
! TATTTTACATCTGTCTCTGA+GGG + chr5_2:66108835-66108854 Msa0782780:intron 30.0%
!! TTTTCAAGCAATCATTCTTG+AGG - chr5_2:66109054-66109073 None:intergenic 30.0%
TTGAAAATCAACTGTACAGT+TGG + chr5_2:66109067-66109086 Msa0782780:CDS 30.0%
!!! TTCAGATGTTACTTTTGATG+TGG + chr5_2:66109192-66109211 Msa0782780:CDS 30.0%
CATGAAAAGAAGATGGTAAA+AGG - chr5_2:66109386-66109405 None:intergenic 30.0%
! CTTTTACCATCTTCTTTTCA+TGG + chr5_2:66109384-66109403 Msa0782780:intron 30.0%
GTAAAAGTAAACGGAAAATC+AGG - chr5_2:66109541-66109560 None:intergenic 30.0%
!! GATTTTCCGTTTACTTTTAC+AGG + chr5_2:66109541-66109560 Msa0782780:intron 30.0%
! ATCTAGTGATTTTCCAGTTT+CGG + chr5_2:66109628-66109647 Msa0782780:CDS 30.0%
TGATTAGTAAGTAGGTATAC+CGG - chr5_2:66109843-66109862 None:intergenic 30.0%
!!! ACTAATCACTTGTTTTTGTC+TGG + chr5_2:66109855-66109874 Msa0782780:intron 30.0%
! TTTCAGTAACAAGTGTTGTA+AGG - chr5_2:66109929-66109948 None:intergenic 30.0%
! GGAACGTGTAAGATTTATTT+TGG - chr5_2:66110067-66110086 None:intergenic 30.0%
AATTCCGTAACTAGTTAGAT+TGG - chr5_2:66110149-66110168 None:intergenic 30.0%
TAGTTACGGAATTAATGACA+TGG + chr5_2:66110156-66110175 Msa0782780:intron 30.0%
TAATGACATGGCTAATTCTA+TGG + chr5_2:66110168-66110187 Msa0782780:intron 30.0%
!!! AACTTCTTTTTTTGAACAGG+TGG - chr5_2:66110398-66110417 None:intergenic 30.0%
GGAAAAAAAACATCTGACAT+TGG + chr5_2:66110510-66110529 Msa0782780:intron 30.0%
AAAATCATGTTACACATTGC+AGG - chr5_2:66110941-66110960 None:intergenic 30.0%
! TGCAATGTGTAACATGATTT+TGG + chr5_2:66110940-66110959 Msa0782780:intron 30.0%
GGAAAGAAAATAACAAGAGA+AGG - chr5_2:66111086-66111105 None:intergenic 30.0%
ATCAATAAAAAAGAAAGCGG+TGG - chr5_2:66111107-66111126 None:intergenic 30.0%
AAAGTCCAAATTATCGAGAA+CGG - chr5_2:66111137-66111156 None:intergenic 30.0%
TTGTACATTGACATTCAATG+AGG + chr5_2:66111269-66111288 Msa0782780:intron 30.0%
! ATTTAGAACAGAGGATCAAA+AGG - chr5_2:66111372-66111391 None:intergenic 30.0%
! TAAACATGGATTTAGAACAG+AGG - chr5_2:66111381-66111400 None:intergenic 30.0%
ATAAGATGGTTCTTATGGTT+TGG + chr5_2:66111469-66111488 Msa0782780:intron 30.0%
! GTGATAATGTTGAAAGAATG+GGG + chr5_2:66111741-66111760 Msa0782780:three_prime_UTR 30.0%
CTATTGAAACATAGAGAAGT+TGG - chr5_2:66111805-66111824 None:intergenic 30.0%
GTTTGAACAAAGGATATCAA+GGG - chr5_2:66112027-66112046 None:intergenic 30.0%
TGTTTGAACAAAGGATATCA+AGG - chr5_2:66112028-66112047 None:intergenic 30.0%
ACACTAATGTTTGCAGAATT+AGG + chr5_2:66112045-66112064 Msa0782780:three_prime_UTR 30.0%
CAGAATTAGGTTCAATAGAA+TGG + chr5_2:66112058-66112077 Msa0782780:three_prime_UTR 30.0%
!! AAAGTGTTAATGTTTCTGGA+TGG + chr5_2:66112152-66112171 Msa0782780:three_prime_UTR 30.0%
TCTTTCAACACATAAATACC+TGG - chr5_2:66112231-66112250 None:intergenic 30.0%
GGTATTTATGTGTTGAAAGA+TGG + chr5_2:66112231-66112250 Msa0782780:three_prime_UTR 30.0%
! TTTTGTGAAGGGTAGAATTG+GGG - chr5_2:66107215-66107234 None:intergenic 35.0%
! GTTTTGTGAAGGGTAGAATT+GGG - chr5_2:66107216-66107235 None:intergenic 35.0%
TCATGGCGGTTGTTTATTTA+GGG - chr5_2:66107260-66107279 None:intergenic 35.0%
GGATAATTCTGCGTATGTTT+CGG + chr5_2:66107506-66107525 Msa0782780:CDS 35.0%
TTTCAAGAGAGCGATCAAAA+TGG - chr5_2:66107629-66107648 None:intergenic 35.0%
CATGCTACCCTTATATTTCA+AGG - chr5_2:66107664-66107683 None:intergenic 35.0%
TGAAATATAAGGGTAGCATG+TGG + chr5_2:66107664-66107683 Msa0782780:CDS 35.0%
!! GGCTTAACTTATTTTCGTGT+TGG - chr5_2:66107816-66107835 None:intergenic 35.0%
TCAACATCTTCATCTGTGTT+AGG - chr5_2:66107837-66107856 None:intergenic 35.0%
CTGTGAAAACTATGTTTAGG+CGG + chr5_2:66107936-66107955 Msa0782780:intron 35.0%
! GTTTCTCTTACAGGTTTTCT+AGG - chr5_2:66108046-66108065 None:intergenic 35.0%
TTGTTTAACCATTGCCTTGA+GGG - chr5_2:66108417-66108436 None:intergenic 35.0%
ATTGTTTAACCATTGCCTTG+AGG - chr5_2:66108418-66108437 None:intergenic 35.0%
TGAAGCCTTCATGTATCATA+TGG - chr5_2:66108615-66108634 None:intergenic 35.0%
ATGATACATGAAGGCTTCAT+TGG + chr5_2:66108616-66108635 Msa0782780:intron 35.0%
! ATTTTACATCTGTCTCTGAG+GGG + chr5_2:66108836-66108855 Msa0782780:intron 35.0%
ACATTCGCAAACTCAAAGAA+CGG - chr5_2:66108871-66108890 None:intergenic 35.0%
!!! GTTACAAGCGTTTTTTCAGA+CGG + chr5_2:66109005-66109024 Msa0782780:CDS 35.0%
CATGAATAGAGTTAAGCTGT+GGG - chr5_2:66109117-66109136 None:intergenic 35.0%
ACATGAATAGAGTTAAGCTG+TGG - chr5_2:66109118-66109137 None:intergenic 35.0%
GCACTATTGGAGAATAATGA+AGG + chr5_2:66109169-66109188 Msa0782780:CDS 35.0%
!!! ATGTTACTTTTGATGTGGCT+GGG + chr5_2:66109197-66109216 Msa0782780:CDS 35.0%
!!! ATTTTTTGATGGCACGGATA+TGG + chr5_2:66109279-66109298 Msa0782780:CDS 35.0%
! TGTGACAGATTTAGAACCAA+AGG + chr5_2:66109318-66109337 Msa0782780:CDS 35.0%
ACACTACCATGAAAAGAAGA+TGG - chr5_2:66109393-66109412 None:intergenic 35.0%
! TTTCATGGTAGTGTTAAGCA+CGG + chr5_2:66109399-66109418 Msa0782780:intron 35.0%
TCTGTAGATAAAATGCAGCA+TGG - chr5_2:66109567-66109586 None:intergenic 35.0%
TTTGCTTCTCAAAATCTAGC+CGG + chr5_2:66109821-66109840 Msa0782780:CDS 35.0%
!!! TTGTTTTTGTCTGGTTTGCA+TGG + chr5_2:66109864-66109883 Msa0782780:intron 35.0%
!! TGTTTTTGTCTGGTTTGCAT+GGG + chr5_2:66109865-66109884 Msa0782780:intron 35.0%
! CAACTTTGTTTAACTAGCAG+AGG - chr5_2:66109994-66110013 None:intergenic 35.0%
CTTGCCAATCTAACTAGTTA+CGG + chr5_2:66110142-66110161 Msa0782780:intron 35.0%
AAACATAAACAGTAAACCCC+TGG - chr5_2:66110213-66110232 None:intergenic 35.0%
! ACTAAGGTCTTTTACATAGC+AGG - chr5_2:66110692-66110711 None:intergenic 35.0%
GAAAATAACAAGAGAAGGGA+AGG - chr5_2:66111081-66111100 None:intergenic 35.0%
! CTTTTCCGTTCTCGATAATT+TGG + chr5_2:66111129-66111148 Msa0782780:intron 35.0%
TATCCACATGCTTGATAAGA+TGG + chr5_2:66111455-66111474 Msa0782780:intron 35.0%
GCTTGATAAGATGGTTCTTA+TGG + chr5_2:66111464-66111483 Msa0782780:intron 35.0%
AATGTTGAAAGAATGGGGAT+AGG + chr5_2:66111746-66111765 Msa0782780:three_prime_UTR 35.0%
ATAGGAAAAGGCAAAAGAGA+AGG + chr5_2:66111764-66111783 Msa0782780:three_prime_UTR 35.0%
GTTATGTAAATGTCTCCGAT+GGG + chr5_2:66111866-66111885 Msa0782780:three_prime_UTR 35.0%
TTATGTAAATGTCTCCGATG+GGG + chr5_2:66111867-66111886 Msa0782780:three_prime_UTR 35.0%
! GCTCTTCTGCAATATACTTT+TGG + chr5_2:66111927-66111946 Msa0782780:three_prime_UTR 35.0%
!! TCTGCAATATACTTTTGGAG+AGG + chr5_2:66111932-66111951 Msa0782780:three_prime_UTR 35.0%
! TTCAAAAGTATGGATGGACT+TGG - chr5_2:66111960-66111979 None:intergenic 35.0%
!!! GAATTGGGGAAGAAGTGTTT+TGG - chr5_2:66107201-66107220 None:intergenic 40.0%
!! GGTTTTGTGAAGGGTAGAAT+TGG - chr5_2:66107217-66107236 None:intergenic 40.0%
!! GATTTTGGGGGTTTTGTGAA+GGG - chr5_2:66107226-66107245 None:intergenic 40.0%
!! TGATTTTGGGGGTTTTGTGA+AGG - chr5_2:66107227-66107246 None:intergenic 40.0%
GTCATGGCGGTTGTTTATTT+AGG - chr5_2:66107261-66107280 None:intergenic 40.0%
AAATAAACAACCGCCATGAC+CGG + chr5_2:66107261-66107280 Msa0782780:exon 40.0%
TCGATAACGCAAACGGTTAA+CGG + chr5_2:66107348-66107367 Msa0782780:CDS 40.0%
TCGCACAAATTCTTGATCCA+AGG + chr5_2:66107372-66107391 Msa0782780:CDS 40.0%
CGCACAAATTCTTGATCCAA+GGG + chr5_2:66107373-66107392 Msa0782780:CDS 40.0%
ACATACGCAGAATTATCCTC+CGG - chr5_2:66107504-66107523 None:intergenic 40.0%
TTTGATCGCTCTCTTGAAAG+TGG + chr5_2:66107630-66107649 Msa0782780:CDS 40.0%
ATATAAGGGTAGCATGTGGT+AGG + chr5_2:66107668-66107687 Msa0782780:intron 40.0%
TATAAGGGTAGCATGTGGTA+GGG + chr5_2:66107669-66107688 Msa0782780:intron 40.0%
GAGGAAAGTCAAAACACTAG+AGG + chr5_2:66108016-66108035 Msa0782780:intron 40.0%
AATGCTAAACAATCCCCTCA+AGG + chr5_2:66108400-66108419 Msa0782780:intron 40.0%
TGTTTAACCATTGCCTTGAG+GGG - chr5_2:66108416-66108435 None:intergenic 40.0%
ATTCCTTAACCATTTCCCTG+AGG + chr5_2:66108529-66108548 Msa0782780:intron 40.0%
TTCCTTAACCATTTCCCTGA+GGG + chr5_2:66108530-66108549 Msa0782780:intron 40.0%
TTAGTCTATGCAGTTGTGTG+TGG + chr5_2:66108687-66108706 Msa0782780:intron 40.0%
TAGTCTATGCAGTTGTGTGT+GGG + chr5_2:66108688-66108707 Msa0782780:intron 40.0%
TCTGACATTGGATCACACTT+TGG + chr5_2:66109145-66109164 Msa0782780:CDS 40.0%
! ATCACACTTTGGTGCACTAT+TGG + chr5_2:66109156-66109175 Msa0782780:CDS 40.0%
!!! GATGTTACTTTTGATGTGGC+TGG + chr5_2:66109196-66109215 Msa0782780:CDS 40.0%
!!! TGTTACTTTTGATGTGGCTG+GGG + chr5_2:66109198-66109217 Msa0782780:CDS 40.0%
GAAGTTTCCTGGTCATAAGT+TGG + chr5_2:66109222-66109241 Msa0782780:CDS 40.0%
! TCGAAATTCTGGAGATCTAG+CGG - chr5_2:66109254-66109273 None:intergenic 40.0%
GCATGGCCTGTAAAAGTAAA+CGG - chr5_2:66109550-66109569 None:intergenic 40.0%
!! TGTAGCCAACATTTTGACCT+TGG + chr5_2:66109754-66109773 Msa0782780:CDS 40.0%
!! GCAAACAGCTTTTAACTCTG+TGG - chr5_2:66109795-66109814 None:intergenic 40.0%
GTTGTTTGACATACACGAGT+AGG + chr5_2:66110010-66110029 Msa0782780:intron 40.0%
TGACATGGCTAATTCTATGG+AGG + chr5_2:66110171-66110190 Msa0782780:intron 40.0%
GACATGGCTAATTCTATGGA+GGG + chr5_2:66110172-66110191 Msa0782780:intron 40.0%
TCGGTCAAACACAAACTAGT+AGG + chr5_2:66110241-66110260 Msa0782780:intron 40.0%
AAGTCAGCAATGCATCGTTA+TGG - chr5_2:66110469-66110488 None:intergenic 40.0%
GGCATTTCACATGATTAGAG+TGG - chr5_2:66110617-66110636 None:intergenic 40.0%
CTAATCATGTGAAATGCCGT+TGG + chr5_2:66110619-66110638 Msa0782780:intron 40.0%
AAGAGAAAAACGGACACGTT+TGG - chr5_2:66110829-66110848 None:intergenic 40.0%
ATATAGTCAACCCTGCTTAG+TGG + chr5_2:66110990-66111009 Msa0782780:intron 40.0%
TATAGTCAACCCTGCTTAGT+GGG + chr5_2:66110991-66111010 Msa0782780:intron 40.0%
! AAACCTTTTCCCACTAAGCA+GGG - chr5_2:66111003-66111022 None:intergenic 40.0%
! AAAACCTTTTCCCACTAAGC+AGG - chr5_2:66111004-66111023 None:intergenic 40.0%
AATAACAAGAGAAGGGAAGG+AGG - chr5_2:66111078-66111097 None:intergenic 40.0%
AAAAACAGATAGAAACCCGC+AGG - chr5_2:66111312-66111331 None:intergenic 40.0%
GAACCATCTTATCAAGCATG+TGG - chr5_2:66111461-66111480 None:intergenic 40.0%
! CCATGGGCATTTTTCTTTCA+TGG - chr5_2:66111533-66111552 None:intergenic 40.0%
CCATGAAAGAAAAATGCCCA+TGG + chr5_2:66111530-66111549 Msa0782780:CDS 40.0%
GGAAAAATCTCAGAGTGTGT+GGG + chr5_2:66111612-66111631 Msa0782780:CDS 40.0%
GAAAGAATGGGGATAGGAAA+AGG + chr5_2:66111752-66111771 Msa0782780:three_prime_UTR 40.0%
TGAAACATAGAGAAGTTGGC+AGG - chr5_2:66111801-66111820 None:intergenic 40.0%
GGTTATGTAAATGTCTCCGA+TGG + chr5_2:66111865-66111884 Msa0782780:three_prime_UTR 40.0%
CTAAACAACTTACACCCCAT+CGG - chr5_2:66111884-66111903 None:intergenic 40.0%
! GTCCATCCATACTTTTGAAC+TGG + chr5_2:66111961-66111980 Msa0782780:three_prime_UTR 40.0%
! CTCCAGTTCAAAAGTATGGA+TGG - chr5_2:66111966-66111985 None:intergenic 40.0%
! CATCCATACTTTTGAACTGG+AGG + chr5_2:66111964-66111983 Msa0782780:three_prime_UTR 40.0%
TGACCTCCAGTTCAAAAGTA+TGG - chr5_2:66111970-66111989 None:intergenic 40.0%
ATATCAAGGGACAAAGCAGT+TGG - chr5_2:66112014-66112033 None:intergenic 40.0%
TGTGTTGAAAGATGGCAGAA+TGG + chr5_2:66112239-66112258 Msa0782780:three_prime_UTR 40.0%
CGATCTACTTCTACCCTGAT+GGG + chr5_2:66107472-66107491 Msa0782780:CDS 45.0%
! TGTTTCGGTTTTCATCGCGT+TGG + chr5_2:66107521-66107540 Msa0782780:CDS 45.0%
CTTGTTGATCAGAGTGGTCA+GGG + chr5_2:66107585-66107604 Msa0782780:CDS 45.0%
TTGTTGATCAGAGTGGTCAG+GGG + chr5_2:66107586-66107605 Msa0782780:CDS 45.0%
GTTTAGGCGGTTTAGTCATG+TGG + chr5_2:66107949-66107968 Msa0782780:intron 45.0%
TCATGTGGAGAGAAGACATG+TGG + chr5_2:66107964-66107983 Msa0782780:intron 45.0%
GACATGTGGATTCTGACCTA+AGG + chr5_2:66107978-66107997 Msa0782780:intron 45.0%
CCATCTGATCTACTCTCCTT+AGG - chr5_2:66107997-66108016 None:intergenic 45.0%
CCTAAGGAGAGTAGATCAGA+TGG + chr5_2:66107994-66108013 Msa0782780:intron 45.0%
AAGGAGAGTAGATCAGATGG+AGG + chr5_2:66107997-66108016 Msa0782780:intron 45.0%
AAGCCTTACCCTACTAAGTG+GGG - chr5_2:66108142-66108161 None:intergenic 45.0%
CAAGCCTTACCCTACTAAGT+GGG - chr5_2:66108143-66108162 None:intergenic 45.0%
AAACAATCCCCTCAAGGCAA+TGG + chr5_2:66108406-66108425 Msa0782780:intron 45.0%
AGTCTATGCAGTTGTGTGTG+GGG + chr5_2:66108689-66108708 Msa0782780:intron 45.0%
AGTTGTGTGTGGGGATAACT+TGG + chr5_2:66108698-66108717 Msa0782780:intron 45.0%
TCCTCTGAGTTGTAACCTTG+TGG + chr5_2:66108900-66108919 Msa0782780:intron 45.0%
TCCACAAGGTTACAACTCAG+AGG - chr5_2:66108904-66108923 None:intergenic 45.0%
GAGTTGTAACCTTGTGGACA+AGG + chr5_2:66108906-66108925 Msa0782780:intron 45.0%
ATGCATTGTCCTTGTCCACA+AGG - chr5_2:66108918-66108937 None:intergenic 45.0%
CAACTGTACAGTTGGAGTTG+TGG + chr5_2:66109075-66109094 Msa0782780:CDS 45.0%
GTGATCCAATGTCAGACTCT+GGG - chr5_2:66109141-66109160 None:intergenic 45.0%
TGTGATCCAATGTCAGACTC+TGG - chr5_2:66109142-66109161 None:intergenic 45.0%
!! TCCTGGTCATAAGTTGGTGT+TGG + chr5_2:66109228-66109247 Msa0782780:CDS 45.0%
!! TATTTGGGGGAAGTACTGCT+CGG + chr5_2:66109503-66109522 Msa0782780:intron 45.0%
CAGAGATTCCCTTACAGAAG+AGG + chr5_2:66109583-66109602 Msa0782780:CDS 45.0%
AGATTCCCTTACAGAAGAGG+TGG + chr5_2:66109586-66109605 Msa0782780:CDS 45.0%
CATGTCCACCTCTTCTGTAA+GGG - chr5_2:66109594-66109613 None:intergenic 45.0%
GCTATCAATGTCTCCGAAAC+TGG - chr5_2:66109644-66109663 None:intergenic 45.0%
TTAGCTGCAGCAGACAAGTA+CGG + chr5_2:66109671-66109690 Msa0782780:CDS 45.0%
TCTCGTCTTTGCAAGGACAT+TGG + chr5_2:66109722-66109741 Msa0782780:CDS 45.0%
GTCAGCCAAGGTCAAAATGT+TGG - chr5_2:66109762-66109781 None:intergenic 45.0%
TTAACTCTGTGGCATGGCAA+TGG - chr5_2:66109784-66109803 None:intergenic 45.0%
!! CAGCTTTTAACTCTGTGGCA+TGG - chr5_2:66109790-66109809 None:intergenic 45.0%
TCTATGGAGGGTTTGACCAT+AGG + chr5_2:66110184-66110203 Msa0782780:intron 45.0%
CATAAACAGTAAACCCCTGG+TGG - chr5_2:66110210-66110229 None:intergenic 45.0%
! GTTTGGAACACATGAAGGCT+AGG - chr5_2:66110812-66110831 None:intergenic 45.0%
! GACACGTTTGGAACACATGA+AGG - chr5_2:66110817-66110836 None:intergenic 45.0%
ATGAGGTCAGACCATTGTAG+AGG + chr5_2:66111286-66111305 Msa0782780:intron 45.0%
AGATCTCTGACTGTAGCCAT+GGG - chr5_2:66111549-66111568 None:intergenic 45.0%
AAGATCTCTGACTGTAGCCA+TGG - chr5_2:66111550-66111569 None:intergenic 45.0%
GAGATCTTGAAGACAGTTGC+TGG + chr5_2:66111562-66111581 Msa0782780:CDS 45.0%
AGGGTGATAGTTGCAGTACA+GGG + chr5_2:66111590-66111609 Msa0782780:CDS 45.0%
GGGAAAAATCTCAGAGTGTG+TGG + chr5_2:66111611-66111630 Msa0782780:CDS 45.0%
AGGTAGACTAGATGCTATGC+AGG + chr5_2:66111844-66111863 Msa0782780:three_prime_UTR 45.0%
! GTTAGAAGGAAGCTCTAACC+AGG + chr5_2:66112210-66112229 Msa0782780:three_prime_UTR 45.0%
!! GATGGCAGAATGGATTGTAG+TGG + chr5_2:66112249-66112268 Msa0782780:three_prime_UTR 45.0%
AGATGATGCGTTTCCGGTCA+TGG - chr5_2:66107277-66107296 None:intergenic 50.0%
TGTCGGAGATGATGCGTTTC+CGG - chr5_2:66107283-66107302 None:intergenic 50.0%
GAGATCGTTGGGGAGGATAA+CGG - chr5_2:66107324-66107343 None:intergenic 50.0%
TTATCGAGCGCGAGATCGTT+GGG - chr5_2:66107335-66107354 None:intergenic 50.0%
GCGATCTACTTCTACCCTGA+TGG + chr5_2:66107471-66107490 Msa0782780:CDS 50.0%
CTACCCTGATGGGAAGAATC+CGG + chr5_2:66107482-66107501 Msa0782780:CDS 50.0%
! CTCACGCTTGTTGATCAGAG+TGG + chr5_2:66107579-66107598 Msa0782780:CDS 50.0%
! GCTTGTTGATCAGAGTGGTC+AGG + chr5_2:66107584-66107603 Msa0782780:CDS 50.0%
TAGAGAGAGAGGGAGAGAGT+TGG + chr5_2:66107891-66107910 Msa0782780:intron 50.0%
CTTACCCTACTAAGTGGGGT+CGG - chr5_2:66108138-66108157 None:intergenic 50.0%
CCAAGCCTTACCCTACTAAG+TGG - chr5_2:66108144-66108163 None:intergenic 50.0%
CCACTTAGTAGGGTAAGGCT+TGG + chr5_2:66108141-66108160 Msa0782780:intron 50.0%
TGCCCTCAGGGAAATGGTTA+AGG - chr5_2:66108535-66108554 None:intergenic 50.0%
AACTAGTGCCCTCAGGGAAA+TGG - chr5_2:66108541-66108560 None:intergenic 50.0%
CTTGCTAACTAGTGCCCTCA+GGG - chr5_2:66108547-66108566 None:intergenic 50.0%
TCTTGCTAACTAGTGCCCTC+AGG - chr5_2:66108548-66108567 None:intergenic 50.0%
CATGTCCCAGAGTCTGACAT+TGG + chr5_2:66109133-66109152 Msa0782780:CDS 50.0%
GCCAACACCAACTTATGACC+AGG - chr5_2:66109232-66109251 None:intergenic 50.0%
! TGGTAGTGTTAAGCACGGCT+AGG + chr5_2:66109404-66109423 Msa0782780:intron 50.0%
!! ATTTGGGGGAAGTACTGCTC+GGG + chr5_2:66109504-66109523 Msa0782780:intron 50.0%
CCATGTCCACCTCTTCTGTA+AGG - chr5_2:66109595-66109614 None:intergenic 50.0%
CCTTACAGAAGAGGTGGACA+TGG + chr5_2:66109592-66109611 Msa0782780:CDS 50.0%
CAACCCTGCTTAGTGGGAAA+AGG + chr5_2:66110997-66111016 Msa0782780:intron 50.0%
CAAGAGAAGGGAAGGAGGAT+GGG - chr5_2:66111073-66111092 None:intergenic 50.0%
ACAAGAGAAGGGAAGGAGGA+TGG - chr5_2:66111074-66111093 None:intergenic 50.0%
!! GACTTGTTGCAGCTGTCATG+AGG + chr5_2:66111491-66111510 Msa0782780:intron 50.0%
TGTTGCAGCTGTCATGAGGT+CGG + chr5_2:66111495-66111514 Msa0782780:intron 50.0%
! AAGACAGTTGCTGGCTGTGA+GGG + chr5_2:66111571-66111590 Msa0782780:CDS 50.0%
GAGGGTGATAGTTGCAGTAC+AGG + chr5_2:66111589-66111608 Msa0782780:CDS 50.0%
GGGTGATAGTTGCAGTACAG+GGG + chr5_2:66111591-66111610 Msa0782780:CDS 50.0%
GTCACCGCCATCTGAAAGTT+GGG - chr5_2:66111638-66111657 None:intergenic 50.0%
TGTCACCGCCATCTGAAAGT+TGG - chr5_2:66111639-66111658 None:intergenic 50.0%
! TCAGATGGCGGTGACACAAT+TGG + chr5_2:66111643-66111662 Msa0782780:CDS 50.0%
TGATGCGTTTCCGGTCATGG+CGG - chr5_2:66107274-66107293 None:intergenic 55.0%
TATCGAGCGCGAGATCGTTG+GGG - chr5_2:66107334-66107353 None:intergenic 55.0%
GTTATCGAGCGCGAGATCGT+TGG - chr5_2:66107336-66107355 None:intergenic 55.0%
CTCGCGCTCGATAACGCAAA+CGG + chr5_2:66107341-66107360 Msa0782780:CDS 55.0%
TACTCGCTCGCGAAGGGAAT+GGG + chr5_2:66107396-66107415 Msa0782780:CDS 55.0%
! GCGAGCGATGTTTTCACCGT+CGG + chr5_2:66107435-66107454 Msa0782780:CDS 55.0%
! AGCGATGTTTTCACCGTCGG+AGG + chr5_2:66107438-66107457 Msa0782780:CDS 55.0%
! GCGATGTTTTCACCGTCGGA+GGG + chr5_2:66107439-66107458 Msa0782780:CDS 55.0%
CCTCCGGATTCTTCCCATCA+GGG - chr5_2:66107488-66107507 None:intergenic 55.0%
TCCTCCGGATTCTTCCCATC+AGG - chr5_2:66107489-66107508 None:intergenic 55.0%
! TTCATCGCGTTGGCGAGTGA+AGG + chr5_2:66107531-66107550 Msa0782780:CDS 55.0%
! GAGTGGTCAGGGGAAGCATA+AGG + chr5_2:66107596-66107615 Msa0782780:CDS 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr5_2:66108130-66108149 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+AGG + chr5_2:66108130-66108149 Msa0782780:intron 55.0%
GTAGCCGACCCCACTTAGTA+GGG + chr5_2:66108131-66108150 Msa0782780:intron 55.0%
CGACCCCACTTAGTAGGGTA+AGG + chr5_2:66108136-66108155 Msa0782780:intron 55.0%
TGGCACGGATATGGACACAC+AGG + chr5_2:66109288-66109307 Msa0782780:CDS 55.0%
TGCAGCAGACAAGTACGGCT+TGG + chr5_2:66109676-66109695 Msa0782780:CDS 55.0%
! CAGACAAGTACGGCTTGGAG+AGG + chr5_2:66109681-66109700 Msa0782780:CDS 55.0%
GTGCGAGTCTCGTCTTTGCA+AGG + chr5_2:66109715-66109734 Msa0782780:CDS 55.0%
GGTTTGACCATAGGCCACCA+GGG + chr5_2:66110193-66110212 Msa0782780:intron 55.0%
GTTTGACCATAGGCCACCAG+GGG + chr5_2:66110194-66110213 Msa0782780:intron 55.0%
AGTAAACCCCTGGTGGCCTA+TGG - chr5_2:66110203-66110222 None:intergenic 55.0%
CAGACCATTGTAGAGGCCTG+CGG + chr5_2:66111293-66111312 Msa0782780:intron 55.0%
AGACCATTGTAGAGGCCTGC+GGG + chr5_2:66111294-66111313 Msa0782780:intron 55.0%
AAACCCGCAGGCCTCTACAA+TGG - chr5_2:66111300-66111319 None:intergenic 55.0%
! GAAGACAGTTGCTGGCTGTG+AGG + chr5_2:66111570-66111589 Msa0782780:CDS 55.0%
GTGTGGGCCCAACTTTCAGA+TGG + chr5_2:66111628-66111647 Msa0782780:CDS 55.0%
TGGGCCCAACTTTCAGATGG+CGG + chr5_2:66111631-66111650 Msa0782780:CDS 55.0%
ATGGCGGTGACACAATTGGC+AGG + chr5_2:66111647-66111666 Msa0782780:CDS 55.0%
TCCGACACCATCTCCGTCAC+CGG + chr5_2:66107296-66107315 Msa0782780:CDS 60.0%
!! CAAGGGTACTCGCTCGCGAA+GGG + chr5_2:66107390-66107409 Msa0782780:CDS 60.0%
GTACTCGCTCGCGAAGGGAA+TGG + chr5_2:66107395-66107414 Msa0782780:CDS 60.0%
CTCGCGAAGGGAATGGGAGT+TGG + chr5_2:66107402-66107421 Msa0782780:CDS 60.0%
!! TCACCGTCGGAGGGTATCAG+TGG + chr5_2:66107448-66107467 Msa0782780:CDS 60.0%
!! CACCGTCGGAGGGTATCAGT+GGG + chr5_2:66107449-66107468 Msa0782780:CDS 60.0%
CCCTGATGGGAAGAATCCGG+AGG + chr5_2:66107485-66107504 Msa0782780:CDS 60.0%
! CGCGTTGGCGAGTGAAGGAA+CGG + chr5_2:66107536-66107555 Msa0782780:CDS 60.0%
GTGGCTGGGGAGAAGTTTCC+TGG + chr5_2:66109211-66109230 Msa0782780:CDS 60.0%
GGCATGGCAATGGTCAGCCA+AGG - chr5_2:66109774-66109793 None:intergenic 60.0%
GGGTTTGACCATAGGCCACC+AGG + chr5_2:66110192-66110211 Msa0782780:intron 60.0%
GCAGCTGTCATGAGGTCGGA+TGG + chr5_2:66111499-66111518 Msa0782780:intron 60.0%
!! GCCGGTGACGGAGATGGTGT+CGG - chr5_2:66107300-66107319 None:intergenic 65.0%
!! GAGGATAACGGCGCCGGTGA+CGG - chr5_2:66107312-66107331 None:intergenic 65.0%
! GTTGGGGAGGATAACGGCGC+CGG - chr5_2:66107318-66107337 None:intergenic 65.0%
CCTTCGCGAGCGAGTACCCT+TGG - chr5_2:66107392-66107411 None:intergenic 65.0%
!! CCAAGGGTACTCGCTCGCGA+AGG + chr5_2:66107389-66107408 Msa0782780:CDS 65.0%
CGCCCACTGATACCCTCCGA+CGG - chr5_2:66107454-66107473 None:intergenic 65.0%
!! TGGGGGAAGTACTGCTCGGG+AGG + chr5_2:66109507-66109526 Msa0782780:intron 65.0%
!! AACGGCGCCGGTGACGGAGA+TGG - chr5_2:66107306-66107325 None:intergenic 70.0%
CGAGCGCGAGATCGTTGGGG+AGG - chr5_2:66107331-66107350 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 66107198 66112293 66107198 ID=Msa0782780;Name=Msa0782780
chr5_2 mRNA 66107198 66112293 66107198 ID=Msa0782780-mRNA-1;Parent=Msa0782780;Name=Msa0782780-mRNA-1;_AED=0.06;_eAED=0.06;_QI=78|1|1|1|1|1|4|603|407
chr5_2 exon 66107198 66107685 66107198 ID=Msa0782780-mRNA-1:exon:19896;Parent=Msa0782780-mRNA-1
chr5_2 exon 66109003 66109348 66109003 ID=Msa0782780-mRNA-1:exon:19897;Parent=Msa0782780-mRNA-1
chr5_2 exon 66109563 66109842 66109563 ID=Msa0782780-mRNA-1:exon:19898;Parent=Msa0782780-mRNA-1
chr5_2 exon 66111503 66112293 66111503 ID=Msa0782780-mRNA-1:exon:19899;Parent=Msa0782780-mRNA-1
chr5_2 five_prime_UTR 66107198 66107275 66107198 ID=Msa0782780-mRNA-1:five_prime_utr;Parent=Msa0782780-mRNA-1
chr5_2 CDS 66107276 66107685 66107276 ID=Msa0782780-mRNA-1:cds;Parent=Msa0782780-mRNA-1
chr5_2 CDS 66109003 66109348 66109003 ID=Msa0782780-mRNA-1:cds;Parent=Msa0782780-mRNA-1
chr5_2 CDS 66109563 66109842 66109563 ID=Msa0782780-mRNA-1:cds;Parent=Msa0782780-mRNA-1
chr5_2 CDS 66111503 66111690 66111503 ID=Msa0782780-mRNA-1:cds;Parent=Msa0782780-mRNA-1
chr5_2 three_prime_UTR 66111691 66112293 66111691 ID=Msa0782780-mRNA-1:three_prime_utr;Parent=Msa0782780-mRNA-1
Gene Sequence

>Msa0782780

ATGACCGGAAACGCATCATCTCCGACACCATCTCCGTCACCGGCGCCGTTATCCTCCCCAACGATCTCGCGCTCGATAACGCAAACGGTTAACGGTTCGCACAAATTCTTGATCCAAGGGTACTCGCTCGCGAAGGGAATGGGAGTTGGAAAACACATTGCGAGCGATGTTTTCACCGTCGGAGGGTATCAGTGGGCGATCTACTTCTACCCTGATGGGAAGAATCCGGAGGATAATTCTGCGTATGTTTCGGTTTTCATCGCGTTGGCGAGTGAAGGAACGGATGTGAGAGCGCTTTTTGAACTCACGCTTGTTGATCAGAGTGGTCAGGGGAAGCATAAGGTTCATAGCCATTTTGATCGCTCTCTTGAAAGTGGTCCTTATACCTTGAAATATAAGGGTAGCATGTGGGGTTACAAGCGTTTTTTCAGACGGACTTTGCTTGAAAGCTCTGATTTCCTCAAGAATGATTGCTTGAAAATCAACTGTACAGTTGGAGTTGTGGTTTCTGCTGTTGATTGCCCACAGCTTAACTCTATTCATGTCCCAGAGTCTGACATTGGATCACACTTTGGTGCACTATTGGAGAATAATGAAGGTTCAGATGTTACTTTTGATGTGGCTGGGGAGAAGTTTCCTGGTCATAAGTTGGTGTTGGCCGCTAGATCTCCAGAATTTCGATCTAAATTTTTTGATGGCACGGATATGGACACACAGGAGATTGTTGTGACAGATTTAGAACCAAAGGTTTTTAAGGCCATGCTGCATTTTATCTACAGAGATTCCCTTACAGAAGAGGTGGACATGGTTTCATCAACAACATCTAGTGATTTTCCAGTTTCGGAGACATTGATAGCAAAATTGTTAGCTGCAGCAGACAAGTACGGCTTGGAGAGGCTTAGACTGATGTGCGAGTCTCGTCTTTGCAAGGACATTGGTGTGAGTTCTGTAGCCAACATTTTGACCTTGGCTGACCATTGCCATGCCACAGAGTTAAAAGCTGTTTGCCTAAAATTTGCTTCTCAAAATCTAGCCGCTGTCATGAGGTCGGATGGATTTGAGTCCATGAAAGAAAAATGCCCATGGCTACAGTCAGAGATCTTGAAGACAGTTGCTGGCTGTGAGGGTGATAGTTGCAGTACAGGGGAAAAATCTCAGAGTGTGTGGGCCCAACTTTCAGATGGCGGTGACACAATTGGCAGGAGAGTCAGACAGAGACATTGA
Protein sequence

>Msa0782780

MTGNASSPTPSPSPAPLSSPTISRSITQTVNGSHKFLIQGYSLAKGMGVGKHIASDVFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLVDQSGQGKHKVHSHFDRSLESGPYTLKYKGSMWGYKRFFRRTLLESSDFLKNDCLKINCTVGVVVSAVDCPQLNSIHVPESDIGSHFGALLENNEGSDVTFDVAGEKFPGHKLVLAARSPEFRSKFFDGTDMDTQEIVVTDLEPKVFKAMLHFIYRDSLTEEVDMVSSTTSSDFPVSETLIAKLLAAADKYGLERLRLMCESRLCKDIGVSSVANILTLADHCHATELKAVCLKFASQNLAAVMRSDGFESMKEKCPWLQSEILKTVAGCEGDSCSTGEKSQSVWAQLSDGGDTIGRRVRQRH*