AlfalfaGEDB | Msa0311720

M. sativa cultivar zhongmu-4 / Msa0311720

KEGG: K13125
GO: GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0019538 GO:0019787 GO:0031647 GO:0031648 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070013 GO:0070647 GO:0071704 GO:0140096 GO:1901564
PFAM: PF15906.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0311720	XP_013462451.1	100.000	304	0	0	1	304	1	304	0.0	632

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0311720	sp\|Q9SY88\|CSU1_ARATH	76.948	308	64	1	1	301	1	308	1.08e-179	501

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000910	Msa0311720	0.834249	3.342737e-56	-8.615850e-47
Msa0001520	Msa0311720	0.824870	6.385325e-54	-8.615850e-47
Msa0002560	Msa0311720	0.824375	8.351589e-54	-8.615850e-47
Msa0003220	Msa0311720	0.851030	1.156997e-60	-8.615850e-47
Msa0003630	Msa0311720	0.836514	8.952133e-57	-8.615850e-47
Msa0004840	Msa0311720	0.826325	2.886093e-54	-8.615850e-47
Msa0005270	Msa0311720	0.842933	1.909766e-58	-8.615850e-47
Msa0007850	Msa0311720	0.801532	8.612261e-49	-8.615850e-47
Msa0008200	Msa0311720	0.846364	2.275429e-59	-8.615850e-47
Msa0008220	Msa0311720	0.806392	8.409562e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0311720	MtrunA17_Chr2g0280911	100.000	304	0	0	1	304	1	304	0.0	632

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0311720	AT1G61620.1	76.948	308	64	1	1	301	1	308	1.10e-180	501

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Find 87 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCCTTCATTGTCCTA+AGG	0.510580	2_4:-6615861	None:intergenic
AAAATGTTCGGACAGATTTA+TGG	0.181302	2_4:+6616131	Msa0311720:CDS
AAATGCCTTCATTGTCCTAA+GGG	0.533013	2_4:-6615860	None:intergenic
AACCAAGCCATCCTATGTGG+CGG	0.658188	2_4:+6612255	Msa0311720:five_prime_UTR
AACCGCCACATAGGATGGCT+TGG	0.504670	2_4:-6612257	None:intergenic
AACCTGTTTGTTCAGGTTGT+TGG	0.381691	2_4:+6616334	Msa0311720:three_prime_UTR
AAGCATTTGGGAAGTGGTTC+TGG	0.338839	2_4:+6616273	Msa0311720:CDS
AAGTGGTTCTGGTTTGGGGC+TGG	0.352897	2_4:+6616284	Msa0311720:CDS
AATTATAACCGTGACAAGAA+TGG	0.487405	2_4:+6615790	Msa0311720:CDS
AATTTGAAGAAGGGAGGGAC+AGG	0.467984	2_4:+6616210	Msa0311720:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAATAAGTGCCTGTTTGATT+TGG	+	chr2_4:6612870-6612889	Msa0311720:intron	30.0%
CATTATTCATAAGCTTGTCA+CGG	-	chr2_4:6613016-6613035	None:intergenic	30.0%
TGAAAAGGGAAAACAACTTA+TGG	+	chr2_4:6613122-6613141	Msa0311720:intron	30.0%
AACTATTGGAGGAATACTAA+GGG	-	chr2_4:6613239-6613258	None:intergenic	30.0%
AAACTATTGGAGGAATACTA+AGG	-	chr2_4:6613240-6613259	None:intergenic	30.0%
TAATACAGGTCTGTTTGAAT+TGG	-	chr2_4:6613520-6613539	None:intergenic	30.0%
AACTATTAGGTGGATAATAC+AGG	-	chr2_4:6613534-6613553	None:intergenic	30.0%
ATTCAAGCCAGAAATATTCT+TGG	-	chr2_4:6613848-6613867	None:intergenic	30.0%
AGAGCAACTCTTTATTAAGT+GGG	-	chr2_4:6613968-6613987	None:intergenic	30.0%
TATGATATGAGTTCAAAGTG+AGG	-	chr2_4:6614086-6614105	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	6612237	6616657	6612237	ID=Msa0311720;Name=Msa0311720
chr2_4	mRNA	6612237	6616657	6612237	ID=Msa0311720-mRNA-1;Parent=Msa0311720;Name=Msa0311720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=150\|1\|1\|1\|0\|0.5\|2\|328\|304
chr2_4	exon	6612237	6612625	6612237	ID=Msa0311720-mRNA-1:exon:2542;Parent=Msa0311720-mRNA-1
chr2_4	exon	6615654	6616657	6615654	ID=Msa0311720-mRNA-1:exon:2543;Parent=Msa0311720-mRNA-1
chr2_4	five_prime_UTR	6612237	6612386	6612237	ID=Msa0311720-mRNA-1:five_prime_utr;Parent=Msa0311720-mRNA-1
chr2_4	CDS	6612387	6612625	6612387	ID=Msa0311720-mRNA-1:cds;Parent=Msa0311720-mRNA-1
chr2_4	CDS	6615654	6616329	6615654	ID=Msa0311720-mRNA-1:cds;Parent=Msa0311720-mRNA-1
chr2_4	three_prime_UTR	6616330	6616657	6616330	ID=Msa0311720-mRNA-1:three_prime_utr;Parent=Msa0311720-mRNA-1

Gene Sequence

>Msa0311720

ATGCCTCAGCGACATTCGAAGAACAACAACGATCTCGCGTTCTTCACCTACGATGAAAAGCGTAAACTCGGTTATGGAACGCAGAAGGAGAGGTTGGGGAAGGATTCCATCAAACCCTTCGATGCTTGTTCTCTCTGTCTCAAATCGTTGATTGATCCTATGAGCTGCCAAAAAGGTCACCTTTTCTGCAAAGAGTGCATTCTCGAATGCTTATTATCTCAGAAGAAAGACATTCAAAGGAGGCTTGTTGCACATTCTGCTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAAGAGAAATTAATGTTGCAGAAGGCTAAAGAGCTTGATGCATTTGATCAGCAAAATCATGGTGCTGTACCACAATACAGTGATAGAAATTATAACCGTGACAAGAATGGTTTCCATGGGGCAAACAGTGTGAAGGTCACTTCCTATGAGGAAGAAGCCCTTAGGACAATGAAGGCATTTTGGCTGCCTTCTGCTACACCAGAAGCTTCTGTTAAAGTAGAAGCTCCTTCTACAAGCACCATCTGTCCGGAAGGCAAGGAGAATCTAAAGTTAAAGACACTTTTTCCTGTCCAGTTCACTGAAGATACTAGTGAGCAGAAGAAATCGAATGCTCTTGATCGGAGCTACATTTGTCCTAGCTGCAAAACCACTCTCACCAATACAATGTCACTTGTGGCCCTCAGTTCATGTGGGCATGTCTTTTGCAAAAAATGTTCGGACAGATTTATGGCTGTGGATAAGGTTTGTCTTGTTTGCAACAAGGCATGTAAAGAGAGACATTTGGTTAATTTGAAGAAGGGAGGGACAGGTTTTGCTGGTCATGATGATAATCTTGAAGCCAAAGATTTCAAGCATTTGGGAAGTGGTTCTGGTTTGGGGCTGGTTAGACCTGCGATGAAGACTTAA

Protein sequence

>Msa0311720

MPQRHSKNNNDLAFFTYDEKRKLGYGTQKERLGKDSIKPFDACSLCLKSLIDPMSCQKGHLFCKECILECLLSQKKDIQRRLVAHSAQQKQEKEEEEEKLMLQKAKELDAFDQQNHGAVPQYSDRNYNRDKNGFHGANSVKVTSYEEEALRTMKAFWLPSATPEASVKVEAPSTSTICPEGKENLKLKTLFPVQFTEDTSEQKKSNALDRSYICPSCKTTLTNTMSLVALSSCGHVFCKKCSDRFMAVDKVCLVCNKACKERHLVNLKKGGTGFAGHDDNLEAKDFKHLGSGSGLGLVRPAMKT*