AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0311720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0311720 MtrunA17_Chr2g0280911 100.000 304 0 0 1 304 1 304 0.0 632
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0311720 AT1G61620.1 76.948 308 64 1 1 301 1 308 1.10e-180 501

Find 87 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGAAGTGGTTCTGGTTT+GGG 0.138051 2_4:+6616279 Msa0311720:CDS
TACAACTTGTATTTCAAATT+TGG 0.156889 2_4:+6616461 Msa0311720:three_prime_UTR
AAAATGTTCGGACAGATTTA+TGG 0.181302 2_4:+6616131 Msa0311720:CDS
AGCCAAAGATTTCAAGCATT+TGG 0.241306 2_4:+6616260 Msa0311720:CDS
TCCCAAATGCTTGAAATCTT+TGG 0.245837 2_4:-6616262 None:intergenic
TTTGGGAAGTGGTTCTGGTT+TGG 0.250689 2_4:+6616278 Msa0311720:CDS
TTAGGACAATGAAGGCATTT+TGG 0.269797 2_4:+6615863 Msa0311720:CDS
TAAAATAAACCTGTTTGTTC+AGG 0.298874 2_4:+6616327 Msa0311720:exon
TGATGATTGATTTGAGTTCT+AGG 0.316666 2_4:-6612291 None:intergenic
CAGATTTATGGCTGTGGATA+AGG 0.326437 2_4:+6616143 Msa0311720:CDS
AAGCATTTGGGAAGTGGTTC+TGG 0.338839 2_4:+6616273 Msa0311720:CDS
AAGTGGTTCTGGTTTGGGGC+TGG 0.352897 2_4:+6616284 Msa0311720:CDS
GCCAAAGATTTCAAGCATTT+GGG 0.371192 2_4:+6616261 Msa0311720:CDS
TTTAGATTCTCCTTGCCTTC+CGG 0.371922 2_4:-6615949 None:intergenic
AACCTGTTTGTTCAGGTTGT+TGG 0.381691 2_4:+6616334 Msa0311720:three_prime_UTR
CACTAGTATCTTCAGTGAAC+TGG 0.404759 2_4:-6615993 None:intergenic
CCTAAGGGCTTCTTCCTCAT+AGG 0.405370 2_4:-6615845 None:intergenic
TCTACTTTAACAGAAGCTTC+TGG 0.415630 2_4:-6615901 None:intergenic
GGACAGATGGTGCTTGTAGA+AGG 0.418079 2_4:-6615928 None:intergenic
GATCCTATGAGCTGCCAAAA+AGG 0.425178 2_4:+6612540 Msa0311720:CDS
GAAAAGCGTAAACTCGGTTA+TGG 0.432671 2_4:+6612441 Msa0311720:CDS
ACATTTGGTTAATTTGAAGA+AGG 0.439605 2_4:+6616200 Msa0311720:CDS
GAATGCACTCTTTGCAGAAA+AGG 0.439719 2_4:-6612566 None:intergenic
TGGGAAGTGGTTCTGGTTTG+GGG 0.453578 2_4:+6616280 Msa0311720:CDS
ACAAGCATCGAAGGGTTTGA+TGG 0.457979 2_4:-6612493 None:intergenic
TTCCAACAACCTGAACAAAC+AGG 0.463466 2_4:-6616336 None:intergenic
CACTACATTTAAAATTATCA+AGG 0.466929 2_4:-6616511 None:intergenic
AATTTGAAGAAGGGAGGGAC+AGG 0.467984 2_4:+6616210 Msa0311720:CDS
GGAACGCAGAAGGAGAGGTT+GGG 0.470378 2_4:+6612462 Msa0311720:CDS
CTCCTTGCCTTCCGGACAGA+TGG 0.474833 2_4:-6615941 None:intergenic
GATTTCAAGCATTTGGGAAG+TGG 0.478004 2_4:+6616267 Msa0311720:CDS
TTCTACAAGCACCATCTGTC+CGG 0.484063 2_4:+6615930 Msa0311720:CDS
ACAGAGAGAACAAGCATCGA+AGG 0.485205 2_4:-6612502 None:intergenic
TAATATAATATATTAGTAAC+GGG 0.485984 2_4:-6616616 None:intergenic
CATTTGGTTAATTTGAAGAA+GGG 0.486407 2_4:+6616201 Msa0311720:CDS
AATTATAACCGTGACAAGAA+TGG 0.487405 2_4:+6615790 Msa0311720:CDS
TGGAACGCAGAAGGAGAGGT+TGG 0.501288 2_4:+6612461 Msa0311720:CDS
CGTGACAAGAATGGTTTCCA+TGG 0.502082 2_4:+6615799 Msa0311720:CDS
AACCGCCACATAGGATGGCT+TGG 0.504670 2_4:-6612257 None:intergenic
AAAATGCCTTCATTGTCCTA+AGG 0.510580 2_4:-6615861 None:intergenic
CTTGTGGCCCTCAGTTCATG+TGG 0.518421 2_4:+6616093 Msa0311720:CDS
CCTTCACACTGTTTGCCCCA+TGG 0.518851 2_4:-6615816 None:intergenic
TTCGGACAGATTTATGGCTG+TGG 0.519061 2_4:+6616137 Msa0311720:CDS
CCTATGAGGAAGAAGCCCTT+AGG 0.523457 2_4:+6615845 Msa0311720:CDS
GCTGATGACCATGTGAAGAT+TGG 0.525547 2_4:+6616592 Msa0311720:three_prime_UTR
CGGTAAACCGCCACATAGGA+TGG 0.527802 2_4:-6612262 None:intergenic
CACCATCTGTCCGGAAGGCA+AGG 0.529022 2_4:+6615939 Msa0311720:CDS
AAATGCCTTCATTGTCCTAA+GGG 0.533013 2_4:-6615860 None:intergenic
CTCAGAAGAAAGACATTCAA+AGG 0.533692 2_4:+6612604 Msa0311720:CDS
GGCATGTAAAGAGAGACATT+TGG 0.536637 2_4:+6616185 Msa0311720:CDS
GTATCTTCAGTGAACTGGAC+AGG 0.542980 2_4:-6615988 None:intergenic
TGGTTAATTTGAAGAAGGGA+GGG 0.547704 2_4:+6616205 Msa0311720:CDS
TAATTTCTATCACTGTATTG+TGG 0.564386 2_4:-6615772 None:intergenic
TCTCAGTATATAATTGACAT+TGG 0.566560 2_4:+6616563 Msa0311720:three_prime_UTR
TTGGTTAATTTGAAGAAGGG+AGG 0.567285 2_4:+6616204 Msa0311720:CDS
AGAGAAATTAATGTTGCAGA+AGG 0.568024 2_4:+6615705 Msa0311720:CDS
ATAATATAATATATTAGTAA+CGG 0.571863 2_4:-6616617 None:intergenic
AGAAATCGAATGCTCTTGAT+CGG 0.572848 2_4:+6616022 Msa0311720:CDS
GTGACAAGAATGGTTTCCAT+GGG 0.573316 2_4:+6615800 Msa0311720:CDS
GCATTTGATCAGCAAAATCA+TGG 0.574722 2_4:+6615742 Msa0311720:CDS
GAAGCTTCTGGTGTAGCAGA+AGG 0.576976 2_4:-6615889 None:intergenic
GGCCACAAGTGACATTGTAT+TGG 0.579436 2_4:-6616079 None:intergenic
GAGGCATTTCTGTGATAGAT+CGG 0.582822 2_4:-6612371 None:intergenic
AGAAGCCCTTAGGACAATGA+AGG 0.584899 2_4:+6615855 Msa0311720:CDS
CATGGAAACCATTCTTGTCA+CGG 0.586120 2_4:-6615798 None:intergenic
GGTTTGTCTTGTTTGCAACA+AGG 0.588818 2_4:+6616164 Msa0311720:CDS
TGTGAAGGTCACTTCCTATG+AGG 0.588979 2_4:+6615831 Msa0311720:CDS
TGACATTGTATTGGTGAGAG+TGG 0.594170 2_4:-6616070 None:intergenic
TACGATGAAAAGCGTAAACT+CGG 0.604188 2_4:+6612435 Msa0311720:CDS
CACCAATACAATGTCACTTG+TGG 0.609974 2_4:+6616077 Msa0311720:CDS
GAACGCAGAAGGAGAGGTTG+GGG 0.614551 2_4:+6612463 Msa0311720:CDS
TTGTGGCCCTCAGTTCATGT+GGG 0.616501 2_4:+6616094 Msa0311720:CDS
GACATGCCCACATGAACTGA+GGG 0.621218 2_4:-6616100 None:intergenic
ACAAGCACCATCTGTCCGGA+AGG 0.622153 2_4:+6615934 Msa0311720:CDS
GCAGAAGGAGAGGTTGGGGA+AGG 0.622647 2_4:+6612467 Msa0311720:CDS
ACTCGGTTATGGAACGCAGA+AGG 0.622656 2_4:+6612452 Msa0311720:CDS
CAAAACCAAGCCATCCTATG+TGG 0.622661 2_4:+6612252 Msa0311720:five_prime_UTR
CAGAGAGAACAAGCATCGAA+GGG 0.626717 2_4:-6612501 None:intergenic
AGACATGCCCACATGAACTG+AGG 0.633451 2_4:-6616101 None:intergenic
CCATGGGGCAAACAGTGTGA+AGG 0.639816 2_4:+6615816 Msa0311720:CDS
GTTATGGAACGCAGAAGGAG+AGG 0.647965 2_4:+6612457 Msa0311720:CDS
AACCAAGCCATCCTATGTGG+CGG 0.658188 2_4:+6612255 Msa0311720:five_prime_UTR
TTGTTCTTCGAATGTCGCTG+AGG 0.663075 2_4:-6612390 None:intergenic
GTCGCGGTAAACCGCCACAT+AGG 0.664687 2_4:-6612266 None:intergenic
TAACGGGACCAATCTTCACA+TGG 0.712382 2_4:-6616600 None:intergenic
ATTTGAGTTCTAGGTCGTCG+CGG 0.729985 2_4:-6612282 None:intergenic
TGACAAGAATGGTTTCCATG+GGG 0.745306 2_4:+6615801 Msa0311720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTGAAATTATGATAT+GGG + chr2_4:6612711-6612730 Msa0311720:intron 10.0%
!!! TTAATGTTATTTTTTTATGA+TGG - chr2_4:6614299-6614318 None:intergenic 10.0%
!!! TAATTTTTTATCTATGATTT+TGG + chr2_4:6614981-6615000 Msa0311720:intron 10.0%
!!! AATTTTTTATCTATGATTTT+GGG + chr2_4:6614982-6615001 Msa0311720:intron 10.0%
!!! TTTATTTTATTTTTTTGAGA+GGG - chr2_4:6615566-6615585 None:intergenic 10.0%
!!! TTTTATTTTATTTTTTTGAG+AGG - chr2_4:6615567-6615586 None:intergenic 10.0%
!! TAATATAATATATTAGTAAC+GGG - chr2_4:6616619-6616638 None:intergenic 10.0%
!! GTTTAATTGAAATTATGATA+TGG + chr2_4:6612710-6612729 Msa0311720:intron 15.0%
!!! TTATTTTTTAGAAGAAAAAG+TGG + chr2_4:6615400-6615419 Msa0311720:intron 15.0%
!!! TATTTTTTAGAAGAAAAAGT+GGG + chr2_4:6615401-6615420 Msa0311720:intron 15.0%
!!! ATTTCCATTTTCAATAAAAT+AGG + chr2_4:6615632-6615651 Msa0311720:intron 15.0%
!! GTTTGATAAATTTGTGTATT+CGG + chr2_4:6612745-6612764 Msa0311720:intron 20.0%
!!! GTTTCAATTTTTTAACTTGT+TGG + chr2_4:6612767-6612786 Msa0311720:intron 20.0%
!!! AACATAAAATGATGATGAAT+TGG + chr2_4:6613375-6613394 Msa0311720:intron 20.0%
!!! TATGTTTTGTTACAATGTAT+TGG - chr2_4:6613645-6613664 None:intergenic 20.0%
!! TAGATTAAAATGAAATCAAG+AGG - chr2_4:6613884-6613903 None:intergenic 20.0%
!!! TCTTGATTTCATTTTAATCT+AGG + chr2_4:6613883-6613902 Msa0311720:intron 20.0%
!!! ATTTCATTTTAATCTAGGAT+TGG + chr2_4:6613888-6613907 Msa0311720:intron 20.0%
!!! TGTTATTTTTTTATGATGGT+GGG - chr2_4:6614295-6614314 None:intergenic 20.0%
!!! ATGTTATTTTTTTATGATGG+TGG - chr2_4:6614296-6614315 None:intergenic 20.0%
!!! ATAACATTAATGCTTTTCAA+AGG + chr2_4:6614309-6614328 Msa0311720:intron 20.0%
!!! TAACATTAATGCTTTTCAAA+GGG + chr2_4:6614310-6614329 Msa0311720:intron 20.0%
!!! TTCTTTTAAGAACATTAAAG+TGG + chr2_4:6614454-6614473 Msa0311720:intron 20.0%
!! TTTAAGAACATTAAGAATCA+TGG - chr2_4:6614666-6614685 None:intergenic 20.0%
!!! ACTTTTGTATCTATGATTTT+GGG - chr2_4:6614888-6614907 None:intergenic 20.0%
!!! TACTTTTGTATCTATGATTT+TGG - chr2_4:6614889-6614908 None:intergenic 20.0%
!! AAAAAATAATGTAAAGCGAT+GGG - chr2_4:6615389-6615408 None:intergenic 20.0%
!! TAAAAAATAATGTAAAGCGA+TGG - chr2_4:6615390-6615409 None:intergenic 20.0%
!! TACAACTTGTATTTCAAATT+TGG + chr2_4:6616461-6616480 Msa0311720:three_prime_UTR 20.0%
!!! CACTACATTTAAAATTATCA+AGG - chr2_4:6616514-6616533 None:intergenic 20.0%
!!! CAATGTTTTGTTTGTTACTT+AGG + chr2_4:6612826-6612845 Msa0311720:intron 25.0%
! AAAAATAAGCCAAATCAAAC+AGG - chr2_4:6612882-6612901 None:intergenic 25.0%
!! AAGATACAATTTTCGTTAGT+GGG - chr2_4:6612969-6612988 None:intergenic 25.0%
! ATGATTGAAATAAGCTGAAA+AGG + chr2_4:6613107-6613126 Msa0311720:intron 25.0%
! TGATTGAAATAAGCTGAAAA+GGG + chr2_4:6613108-6613127 Msa0311720:intron 25.0%
! TCAATGAATTTCATGTTTCT+GGG - chr2_4:6613268-6613287 None:intergenic 25.0%
! ATCAATGAATTTCATGTTTC+TGG - chr2_4:6613269-6613288 None:intergenic 25.0%
! TGAAATCCTAAAATGAATCT+TGG + chr2_4:6613585-6613604 Msa0311720:intron 25.0%
!! ATTTGAGAATCTTCCTTTTA+TGG - chr2_4:6613788-6613807 None:intergenic 25.0%
!!! TTTTAGTTGAAGTATGATTC+AGG + chr2_4:6614172-6614191 Msa0311720:intron 25.0%
!!! GTTATTTTTTTATGATGGTG+GGG - chr2_4:6614294-6614313 None:intergenic 25.0%
! AATCAATAGCTAACATAGAA+AGG + chr2_4:6614335-6614354 Msa0311720:intron 25.0%
! TGAAACTCAAACTCAATATA+AGG - chr2_4:6614429-6614448 None:intergenic 25.0%
! TTAAGAACATTAAAGTGGAA+TGG + chr2_4:6614459-6614478 Msa0311720:intron 25.0%
! CAACTCAATATAATGCTATT+GGG + chr2_4:6614702-6614721 Msa0311720:intron 25.0%
! TCTGTTAAATTTCCATCAAT+TGG + chr2_4:6615008-6615027 Msa0311720:intron 25.0%
! TAATGTTTACAACTTAACAC+TGG - chr2_4:6615595-6615614 None:intergenic 25.0%
!! TCCATTTTCAATAAAATAGG+AGG + chr2_4:6615635-6615654 Msa0311720:intron 25.0%
! TAATTTCTATCACTGTATTG+TGG - chr2_4:6615775-6615794 None:intergenic 25.0%
!! TGTCTTTTGCAAAAAATGTT+CGG + chr2_4:6616119-6616138 Msa0311720:CDS 25.0%
!! ACATTTGGTTAATTTGAAGA+AGG + chr2_4:6616200-6616219 Msa0311720:CDS 25.0%
!! CATTTGGTTAATTTGAAGAA+GGG + chr2_4:6616201-6616220 Msa0311720:CDS 25.0%
! TAAAATAAACCTGTTTGTTC+AGG + chr2_4:6616327-6616346 Msa0311720:exon 25.0%
! TTAGTCAAAAAAGATGATGA+GGG - chr2_4:6616431-6616450 None:intergenic 25.0%
! ATTAGTCAAAAAAGATGATG+AGG - chr2_4:6616432-6616451 None:intergenic 25.0%
! TCTCAGTATATAATTGACAT+TGG + chr2_4:6616563-6616582 Msa0311720:three_prime_UTR 25.0%
!! TGATGATTGATTTGAGTTCT+AGG - chr2_4:6612294-6612313 None:intergenic 30.0%
TAATAAGTGCCTGTTTGATT+TGG + chr2_4:6612870-6612889 Msa0311720:intron 30.0%
! GAAGATACAATTTTCGTTAG+TGG - chr2_4:6612970-6612989 None:intergenic 30.0%
CATTATTCATAAGCTTGTCA+CGG - chr2_4:6613016-6613035 None:intergenic 30.0%
TGAAAAGGGAAAACAACTTA+TGG + chr2_4:6613122-6613141 Msa0311720:intron 30.0%
AACTATTGGAGGAATACTAA+GGG - chr2_4:6613239-6613258 None:intergenic 30.0%
AAACTATTGGAGGAATACTA+AGG - chr2_4:6613240-6613259 None:intergenic 30.0%
TAATACAGGTCTGTTTGAAT+TGG - chr2_4:6613520-6613539 None:intergenic 30.0%
AACTATTAGGTGGATAATAC+AGG - chr2_4:6613534-6613553 None:intergenic 30.0%
! CTCAAACCAAGATTCATTTT+AGG - chr2_4:6613594-6613613 None:intergenic 30.0%
ATTCAAGCCAGAAATATTCT+TGG - chr2_4:6613848-6613867 None:intergenic 30.0%
AGAGCAACTCTTTATTAAGT+GGG - chr2_4:6613968-6613987 None:intergenic 30.0%
TATGATATGAGTTCAAAGTG+AGG - chr2_4:6614086-6614105 None:intergenic 30.0%
AAACTCAATATAAGGCTACT+CGG - chr2_4:6614421-6614440 None:intergenic 30.0%
ATTAAAGTGGAATGGTTTAG+TGG + chr2_4:6614467-6614486 Msa0311720:intron 30.0%
!!! TGAGATAGTTTGCTTTTTCT+TGG - chr2_4:6614520-6614539 None:intergenic 30.0%
! ATTTGCTTTCTCTTGTTTGT+TGG + chr2_4:6614607-6614626 Msa0311720:intron 30.0%
AGAATCATGGAACAATTTAC+TGG - chr2_4:6614653-6614672 None:intergenic 30.0%
CCAATAGCATTATATTGAGT+TGG - chr2_4:6614704-6614723 None:intergenic 30.0%
CCAACTCAATATAATGCTAT+TGG + chr2_4:6614701-6614720 Msa0311720:intron 30.0%
!!! ATTTTAACTACTAGTCGCAT+TGG + chr2_4:6614806-6614825 Msa0311720:intron 30.0%
TCATGCTATGTTTATGATGA+TGG + chr2_4:6614836-6614855 Msa0311720:intron 30.0%
!! GTTTATGATGATGGAATTGA+AGG + chr2_4:6614845-6614864 Msa0311720:intron 30.0%
TGTTTCCAATTCCAACATAA+GGG - chr2_4:6615122-6615141 None:intergenic 30.0%
ATGTTTCCAATTCCAACATA+AGG - chr2_4:6615123-6615142 None:intergenic 30.0%
AGTTTGATGAGTTCAAAGTT+AGG + chr2_4:6615211-6615230 Msa0311720:intron 30.0%
!! TTTTTAGAAGAAAAAGTGGG+AGG + chr2_4:6615404-6615423 Msa0311720:intron 30.0%
AAAGACGACATATACTTGAA+GGG - chr2_4:6615498-6615517 None:intergenic 30.0%
TAAAGACGACATATACTTGA+AGG - chr2_4:6615499-6615518 None:intergenic 30.0%
! GCCTCCTATTTTATTGAAAA+TGG - chr2_4:6615639-6615658 None:intergenic 30.0%
AGAGAAATTAATGTTGCAGA+AGG + chr2_4:6615705-6615724 Msa0311720:CDS 30.0%
AATTATAACCGTGACAAGAA+TGG + chr2_4:6615790-6615809 Msa0311720:CDS 30.0%
AAAATGTTCGGACAGATTTA+TGG + chr2_4:6616131-6616150 Msa0311720:CDS 30.0%
!!! TTATTTTAAGTCTTCATCGC+AGG - chr2_4:6616315-6616334 None:intergenic 30.0%
!!! TGGCTTGGTTTTGTGTTTAT+GGG - chr2_4:6612245-6612264 None:intergenic 35.0%
!!! ATGGCTTGGTTTTGTGTTTA+TGG - chr2_4:6612246-6612265 None:intergenic 35.0%
! TACGATGAAAAGCGTAAACT+CGG + chr2_4:6612435-6612454 Msa0311720:CDS 35.0%
CTCAGAAGAAAGACATTCAA+AGG + chr2_4:6612604-6612623 Msa0311720:CDS 35.0%
! TTGTTACTTAGGTGCTTGTT+TGG + chr2_4:6612837-6612856 Msa0311720:intron 35.0%
ACAACTTATGGACATGTCAT+TGG + chr2_4:6613134-6613153 Msa0311720:intron 35.0%
TCAAATAAGCCAATCCAAAC+AGG + chr2_4:6613213-6613232 Msa0311720:intron 35.0%
!! ATGAATTTCATGTTTCTGGG+TGG - chr2_4:6613265-6613284 None:intergenic 35.0%
CTCATGCCAATTATTGAGAT+TGG - chr2_4:6613336-6613355 None:intergenic 35.0%
! TGATGATGAATTGGAAAAGC+TGG + chr2_4:6613384-6613403 Msa0311720:intron 35.0%
TTCGAGATGGAGAAACTATT+AGG - chr2_4:6613547-6613566 None:intergenic 35.0%
ATTGATCTCATGTTTCGAGA+TGG - chr2_4:6613560-6613579 None:intergenic 35.0%
TCAAATCTCCATTGTTTGCA+TGG + chr2_4:6613619-6613638 Msa0311720:intron 35.0%
CTCTGTTGAATTAGAAAAGC+TGG + chr2_4:6613668-6613687 Msa0311720:intron 35.0%
! CTTTTATGGTTTCCATGTTC+TGG - chr2_4:6613774-6613793 None:intergenic 35.0%
CAGAACATGGAAACCATAAA+AGG + chr2_4:6613772-6613791 Msa0311720:intron 35.0%
GAAGATTCTCAAATAGTGCT+GGG + chr2_4:6613794-6613813 Msa0311720:intron 35.0%
ACACTGTCCAAGAATATTTC+TGG + chr2_4:6613838-6613857 Msa0311720:intron 35.0%
! TTTATTAAGTGGGCTCTATC+AGG - chr2_4:6613958-6613977 None:intergenic 35.0%
CAGAGCAACTCTTTATTAAG+TGG - chr2_4:6613969-6613988 None:intergenic 35.0%
TTAATAAAGAGTTGCTCTGC+TGG + chr2_4:6613970-6613989 Msa0311720:intron 35.0%
ACCAATGCAAAGACAAAATG+TGG - chr2_4:6614148-6614167 None:intergenic 35.0%
AAGTATGATTCAGGATTCCA+GGG + chr2_4:6614181-6614200 Msa0311720:intron 35.0%
ATGTATAGGTTCCCTTCTAT+GGG - chr2_4:6614222-6614241 None:intergenic 35.0%
AACCTATACATCAACAAAGC+TGG + chr2_4:6614231-6614250 Msa0311720:intron 35.0%
TAGAAAGGCAATTCCTTCTT+AGG + chr2_4:6614350-6614369 Msa0311720:intron 35.0%
AGAAAGGCAATTCCTTCTTA+GGG + chr2_4:6614351-6614370 Msa0311720:intron 35.0%
GAGACAAATATATCTATGCC+TGG + chr2_4:6614383-6614402 Msa0311720:intron 35.0%
! ATGGTTTAGTGGACATAGTT+TGG + chr2_4:6614478-6614497 Msa0311720:intron 35.0%
! TGGTTTAGTGGACATAGTTT+GGG + chr2_4:6614479-6614498 Msa0311720:intron 35.0%
ATCAAAATACTGATGCAGTC+TGG - chr2_4:6614573-6614592 None:intergenic 35.0%
AACAATTTACTGGACAGAGT+TGG - chr2_4:6614643-6614662 None:intergenic 35.0%
AAAAGAGGTGGTTCTTTCTT+AGG - chr2_4:6614764-6614783 None:intergenic 35.0%
AATCATGTACCTTGATCAGA+TGG + chr2_4:6614929-6614948 Msa0311720:intron 35.0%
ACTTCTCTCATACCAATTGA+TGG - chr2_4:6615023-6615042 None:intergenic 35.0%
CTACAATCCTTGACAAAGTT+CGG - chr2_4:6615177-6615196 None:intergenic 35.0%
AGTTCAAAGTTAGGATCAGT+AGG + chr2_4:6615220-6615239 Msa0311720:intron 35.0%
TTTCTTAAATAGAGAGAGCG+TGG + chr2_4:6615272-6615291 Msa0311720:intron 35.0%
! TGGATCACTATTAGCTTGAA+TGG + chr2_4:6615312-6615331 Msa0311720:intron 35.0%
! GGATCACTATTAGCTTGAAT+GGG + chr2_4:6615313-6615332 Msa0311720:intron 35.0%
! GATCACTATTAGCTTGAATG+GGG + chr2_4:6615314-6615333 Msa0311720:intron 35.0%
! AAGAAAAAGTGGGAGGTTTT+TGG + chr2_4:6615411-6615430 Msa0311720:intron 35.0%
ACTCCTTCACAAATTCTAGT+GGG + chr2_4:6615457-6615476 Msa0311720:intron 35.0%
AAGACGACATATACTTGAAG+GGG - chr2_4:6615497-6615516 None:intergenic 35.0%
GCATTTGATCAGCAAAATCA+TGG + chr2_4:6615742-6615761 Msa0311720:CDS 35.0%
AAATGCCTTCATTGTCCTAA+GGG - chr2_4:6615863-6615882 None:intergenic 35.0%
AAAATGCCTTCATTGTCCTA+AGG - chr2_4:6615864-6615883 None:intergenic 35.0%
!!! TTAGGACAATGAAGGCATTT+TGG + chr2_4:6615863-6615882 Msa0311720:CDS 35.0%
TCTACTTTAACAGAAGCTTC+TGG - chr2_4:6615904-6615923 None:intergenic 35.0%
AGAAATCGAATGCTCTTGAT+CGG + chr2_4:6616022-6616041 Msa0311720:CDS 35.0%
! TTGGTTAATTTGAAGAAGGG+AGG + chr2_4:6616204-6616223 Msa0311720:CDS 35.0%
! TGGTTAATTTGAAGAAGGGA+GGG + chr2_4:6616205-6616224 Msa0311720:CDS 35.0%
AGCCAAAGATTTCAAGCATT+TGG + chr2_4:6616260-6616279 Msa0311720:CDS 35.0%
GCCAAAGATTTCAAGCATTT+GGG + chr2_4:6616261-6616280 Msa0311720:CDS 35.0%
TCCCAAATGCTTGAAATCTT+TGG - chr2_4:6616265-6616284 None:intergenic 35.0%
! TTTTGCAGAAAGAGGGGTTA+GGG - chr2_4:6612348-6612367 None:intergenic 40.0%
! ATTTTGCAGAAAGAGGGGTT+AGG - chr2_4:6612349-6612368 None:intergenic 40.0%
! TCGGTGATTTTGCAGAAAGA+GGG - chr2_4:6612355-6612374 None:intergenic 40.0%
! ATCGGTGATTTTGCAGAAAG+AGG - chr2_4:6612356-6612375 None:intergenic 40.0%
! GAGGCATTTCTGTGATAGAT+CGG - chr2_4:6612374-6612393 None:intergenic 40.0%
! GAGTTTACGCTTTTCATCGT+AGG - chr2_4:6612436-6612455 None:intergenic 40.0%
! GAAAAGCGTAAACTCGGTTA+TGG + chr2_4:6612441-6612460 Msa0311720:CDS 40.0%
! TGCAGAAAAGGTGACCTTTT+TGG - chr2_4:6612557-6612576 None:intergenic 40.0%
GAATGCACTCTTTGCAGAAA+AGG - chr2_4:6612569-6612588 None:intergenic 40.0%
ATCATCTCTCCAAGTGCTTA+GGG - chr2_4:6613092-6613111 None:intergenic 40.0%
AATCATCTCTCCAAGTGCTT+AGG - chr2_4:6613093-6613112 None:intergenic 40.0%
TTTCTGGGTGGAGAAACTAT+TGG - chr2_4:6613253-6613272 None:intergenic 40.0%
TATTGAGATTGGAGCTCCAA+CGG - chr2_4:6613325-6613344 None:intergenic 40.0%
GGAGCTCCAATCTCAATAAT+TGG + chr2_4:6613327-6613346 Msa0311720:intron 40.0%
! GCTTAGTATCTAGAACTGGA+AGG + chr2_4:6613413-6613432 Msa0311720:intron 40.0%
GAGATGGAGAAACTATTAGG+TGG - chr2_4:6613544-6613563 None:intergenic 40.0%
! TGTATTGGCCATGCAAACAA+TGG - chr2_4:6613630-6613649 None:intergenic 40.0%
!! TGTTCTGGTTTCAGAGTTTG+AGG - chr2_4:6613759-6613778 None:intergenic 40.0%
!! CAAACTCTGAAACCAGAACA+TGG + chr2_4:6613759-6613778 Msa0311720:intron 40.0%
GGAAGATTCTCAAATAGTGC+TGG + chr2_4:6613793-6613812 Msa0311720:intron 40.0%
AATGTGGCCAAACTTTGTCA+AGG - chr2_4:6614132-6614151 None:intergenic 40.0%
! GCCACATTTTGTCTTTGCAT+TGG + chr2_4:6614144-6614163 Msa0311720:intron 40.0%
GAAGTATGATTCAGGATTCC+AGG + chr2_4:6614180-6614199 Msa0311720:intron 40.0%
TAGACCATGTTTCCCATAGA+AGG + chr2_4:6614207-6614226 Msa0311720:intron 40.0%
AGACCATGTTTCCCATAGAA+GGG + chr2_4:6614208-6614227 Msa0311720:intron 40.0%
GATGTATAGGTTCCCTTCTA+TGG - chr2_4:6614223-6614242 None:intergenic 40.0%
!! TGCCAGCTTTGTTGATGTAT+AGG - chr2_4:6614236-6614255 None:intergenic 40.0%
GCACTGTCTTCTAACATTTG+AGG - chr2_4:6614272-6614291 None:intergenic 40.0%
ACTCGGAAGTCTAATATTCC+AGG - chr2_4:6614404-6614423 None:intergenic 40.0%
TTCTTTCTTAGGATCAGCAG+TGG - chr2_4:6614753-6614772 None:intergenic 40.0%
ATACTGTTTGCAGCGAAAAG+AGG - chr2_4:6614779-6614798 None:intergenic 40.0%
TAACTACTAGTCGCATTGGA+AGG + chr2_4:6614810-6614829 Msa0311720:intron 40.0%
CAATTGGTATGAGAGAAGTC+AGG + chr2_4:6615024-6615043 Msa0311720:intron 40.0%
TTCCAGCTTTGCTGATGTAT+GGG + chr2_4:6615094-6615113 Msa0311720:intron 40.0%
ATGTATGGGTTCCCTTATGT+TGG + chr2_4:6615108-6615127 Msa0311720:intron 40.0%
CTTTGTCAAGGATTGTAGAC+TGG + chr2_4:6615179-6615198 Msa0311720:intron 40.0%
CACTCCTTCACAAATTCTAG+TGG + chr2_4:6615456-6615475 Msa0311720:intron 40.0%
!! TTTTGAGAGGGACTTAACAC+TGG - chr2_4:6615554-6615573 None:intergenic 40.0%
GCAGAAGCAAGAAAAAGAAG+AGG + chr2_4:6615678-6615697 Msa0311720:CDS 40.0%
CATGGAAACCATTCTTGTCA+CGG - chr2_4:6615801-6615820 None:intergenic 40.0%
GTGACAAGAATGGTTTCCAT+GGG + chr2_4:6615800-6615819 Msa0311720:CDS 40.0%
TGACAAGAATGGTTTCCATG+GGG + chr2_4:6615801-6615820 Msa0311720:CDS 40.0%
TTTAGATTCTCCTTGCCTTC+CGG - chr2_4:6615952-6615971 None:intergenic 40.0%
CACTAGTATCTTCAGTGAAC+TGG - chr2_4:6615996-6616015 None:intergenic 40.0%
! TGACATTGTATTGGTGAGAG+TGG - chr2_4:6616073-6616092 None:intergenic 40.0%
! CACCAATACAATGTCACTTG+TGG + chr2_4:6616077-6616096 Msa0311720:CDS 40.0%
CAGATTTATGGCTGTGGATA+AGG + chr2_4:6616143-6616162 Msa0311720:CDS 40.0%
!! GGTTTGTCTTGTTTGCAACA+AGG + chr2_4:6616164-6616183 Msa0311720:CDS 40.0%
GGCATGTAAAGAGAGACATT+TGG + chr2_4:6616185-6616204 Msa0311720:CDS 40.0%
GATTTCAAGCATTTGGGAAG+TGG + chr2_4:6616267-6616286 Msa0311720:CDS 40.0%
!! AACCTGTTTGTTCAGGTTGT+TGG + chr2_4:6616334-6616353 Msa0311720:three_prime_UTR 40.0%
TTCCAACAACCTGAACAAAC+AGG - chr2_4:6616339-6616358 None:intergenic 40.0%
CAAAACCAAGCCATCCTATG+TGG + chr2_4:6612252-6612271 Msa0311720:five_prime_UTR 45.0%
!! ATTTGAGTTCTAGGTCGTCG+CGG - chr2_4:6612285-6612304 None:intergenic 45.0%
! CGGTGATTTTGCAGAAAGAG+GGG - chr2_4:6612354-6612373 None:intergenic 45.0%
TTGTTCTTCGAATGTCGCTG+AGG - chr2_4:6612393-6612412 None:intergenic 45.0%
!! ACAAGCATCGAAGGGTTTGA+TGG - chr2_4:6612496-6612515 None:intergenic 45.0%
!! CAGAGAGAACAAGCATCGAA+GGG - chr2_4:6612504-6612523 None:intergenic 45.0%
!! ACAGAGAGAACAAGCATCGA+AGG - chr2_4:6612505-6612524 None:intergenic 45.0%
GATCCTATGAGCTGCCAAAA+AGG + chr2_4:6612540-6612559 Msa0311720:CDS 45.0%
!! TGACCTTTTTGGCAGCTCAT+AGG - chr2_4:6612546-6612565 None:intergenic 45.0%
CAAGTGCTTAGGGTCTGTTT+GGG - chr2_4:6613082-6613101 None:intergenic 45.0%
TACTAAGGGCCTGTTTGGAT+TGG - chr2_4:6613225-6613244 None:intergenic 45.0%
AGGAATACTAAGGGCCTGTT+TGG - chr2_4:6613230-6613249 None:intergenic 45.0%
! GCAGGCTTAGTATCTAGAAC+TGG + chr2_4:6613409-6613428 Msa0311720:intron 45.0%
TGTGACACTGTTCGAGAGAA+GGG - chr2_4:6613465-6613484 None:intergenic 45.0%
TTGTGACACTGTTCGAGAGA+AGG - chr2_4:6613466-6613485 None:intergenic 45.0%
CTGGTTTCAGAGTTTGAGGA+AGG - chr2_4:6613755-6613774 None:intergenic 45.0%
AAAGCCACCACGTGTTGAAA+TGG - chr2_4:6613914-6613933 None:intergenic 45.0%
ATTTCAACACGTGGTGGCTT+TGG + chr2_4:6613913-6613932 Msa0311720:intron 45.0%
TTTCAACACGTGGTGGCTTT+GGG + chr2_4:6613914-6613933 Msa0311720:intron 45.0%
TGACACCATCAACCACATGT+GGG + chr2_4:6613998-6614017 Msa0311720:intron 45.0%
CAGTGATCCAAACCAAAGGT+GGG - chr2_4:6614050-6614069 None:intergenic 45.0%
CTAGCAGTGATCCAAACCAA+AGG - chr2_4:6614054-6614073 None:intergenic 45.0%
CTGCGATCCTTGACAAAGTT+TGG + chr2_4:6614122-6614141 Msa0311720:intron 45.0%
GTTCCCTTCTATGGGAAACA+TGG - chr2_4:6614214-6614233 None:intergenic 45.0%
CAATTCCTTCTTAGGGACAG+TGG + chr2_4:6614358-6614377 Msa0311720:intron 45.0%
TACTGATGCAGTCTGGCTAT+GGG - chr2_4:6614566-6614585 None:intergenic 45.0%
ATACTGATGCAGTCTGGCTA+TGG - chr2_4:6614567-6614586 None:intergenic 45.0%
AAACGTGTGCCATCTGATCA+AGG - chr2_4:6614941-6614960 None:intergenic 45.0%
CTTCCAGCTTTGCTGATGTA+TGG + chr2_4:6615093-6615112 Msa0311720:intron 45.0%
AACCCATACATCAGCAAAGC+TGG - chr2_4:6615099-6615118 None:intergenic 45.0%
GGGTTCCCTTATGTTGGAAT+TGG + chr2_4:6615114-6615133 Msa0311720:intron 45.0%
ATAGTGATCCAGACCACAAG+TGG - chr2_4:6615303-6615322 None:intergenic 45.0%
!!! AGTGGGAGGTTTTTGGTTCA+TGG + chr2_4:6615418-6615437 Msa0311720:intron 45.0%
CCACCCACTAGAATTTGTGA+AGG - chr2_4:6615463-6615482 None:intergenic 45.0%
CCTTCACAAATTCTAGTGGG+TGG + chr2_4:6615460-6615479 Msa0311720:intron 45.0%
CGTGACAAGAATGGTTTCCA+TGG + chr2_4:6615799-6615818 Msa0311720:CDS 45.0%
TGTGAAGGTCACTTCCTATG+AGG + chr2_4:6615831-6615850 Msa0311720:CDS 45.0%
AGAAGCCCTTAGGACAATGA+AGG + chr2_4:6615855-6615874 Msa0311720:CDS 45.0%
TTCTACAAGCACCATCTGTC+CGG + chr2_4:6615930-6615949 Msa0311720:CDS 45.0%
GTATCTTCAGTGAACTGGAC+AGG - chr2_4:6615991-6616010 None:intergenic 45.0%
GGCCACAAGTGACATTGTAT+TGG - chr2_4:6616082-6616101 None:intergenic 45.0%
TTCGGACAGATTTATGGCTG+TGG + chr2_4:6616137-6616156 Msa0311720:CDS 45.0%
AATTTGAAGAAGGGAGGGAC+AGG + chr2_4:6616210-6616229 Msa0311720:CDS 45.0%
AAGCATTTGGGAAGTGGTTC+TGG + chr2_4:6616273-6616292 Msa0311720:CDS 45.0%
!! TTTGGGAAGTGGTTCTGGTT+TGG + chr2_4:6616278-6616297 Msa0311720:CDS 45.0%
!! TTGGGAAGTGGTTCTGGTTT+GGG + chr2_4:6616279-6616298 Msa0311720:CDS 45.0%
GCTGATGACCATGTGAAGAT+TGG + chr2_4:6616592-6616611 Msa0311720:three_prime_UTR 45.0%
TAACGGGACCAATCTTCACA+TGG - chr2_4:6616603-6616622 None:intergenic 45.0%
!! ATAATATAATATATTAGTAA+CGG - chr2_4:6616620-6616639 None:intergenic 5.0%
AACCAAGCCATCCTATGTGG+CGG + chr2_4:6612255-6612274 Msa0311720:five_prime_UTR 50.0%
ACTCGGTTATGGAACGCAGA+AGG + chr2_4:6612452-6612471 Msa0311720:CDS 50.0%
GTTATGGAACGCAGAAGGAG+AGG + chr2_4:6612457-6612476 Msa0311720:CDS 50.0%
TGCTTAGGGTCTGTTTGGGT+TGG - chr2_4:6613078-6613097 None:intergenic 50.0%
CCAAGTGCTTAGGGTCTGTT+TGG - chr2_4:6613083-6613102 None:intergenic 50.0%
CCAAACAGACCCTAAGCACT+TGG + chr2_4:6613080-6613099 Msa0311720:intron 50.0%
CTGGGTGGAGAAACTATTGG+AGG - chr2_4:6613250-6613269 None:intergenic 50.0%
ATCTGTGCCAGTCTATCCGT+TGG + chr2_4:6613306-6613325 Msa0311720:intron 50.0%
GAATTGGAAAAGCTGGCAGC+AGG + chr2_4:6613391-6613410 Msa0311720:intron 50.0%
! CTCAAATAGTGCTGGGCTGT+TGG + chr2_4:6613801-6613820 Msa0311720:intron 50.0%
!! GGATTGGCCATTTCAACACG+TGG + chr2_4:6613904-6613923 Msa0311720:intron 50.0%
TTGGCCATTTCAACACGTGG+TGG + chr2_4:6613907-6613926 Msa0311720:intron 50.0%
! TTCAACACGTGGTGGCTTTG+GGG + chr2_4:6613915-6613934 Msa0311720:intron 50.0%
GTGACACCATCAACCACATG+TGG + chr2_4:6613997-6614016 Msa0311720:intron 50.0%
GCTAACCCACATGTGGTTGA+TGG - chr2_4:6614006-6614025 None:intergenic 50.0%
ACTGGATGCTAACCCACATG+TGG - chr2_4:6614013-6614032 None:intergenic 50.0%
!! ACATGTGGGTTAGCATCCAG+TGG + chr2_4:6614012-6614031 Msa0311720:intron 50.0%
!! CATGTGGGTTAGCATCCAGT+GGG + chr2_4:6614013-6614032 Msa0311720:intron 50.0%
TGGTCAACCCACCTTTGGTT+TGG + chr2_4:6614040-6614059 Msa0311720:intron 50.0%
GCAGTGATCCAAACCAAAGG+TGG - chr2_4:6614051-6614070 None:intergenic 50.0%
CTTTGTCAAGGATCGCAGAC+AGG - chr2_4:6614120-6614139 None:intergenic 50.0%
TTCCTTCTTAGGGACAGTGG+TGG + chr2_4:6614361-6614380 Msa0311720:intron 50.0%
ACTGATGCAGTCTGGCTATG+GGG - chr2_4:6614565-6614584 None:intergenic 50.0%
CTGTTTGCAGCGAAAAGAGG+TGG - chr2_4:6614776-6614795 None:intergenic 50.0%
GGTATGAGAGAAGTCAGGAG+CGG + chr2_4:6615029-6615048 Msa0311720:intron 50.0%
!! AGGGGCACTTCTAACTTTCG+AGG + chr2_4:6615057-6615076 Msa0311720:intron 50.0%
AGTGCAGCCGAACTTTGTCA+AGG + chr2_4:6615167-6615186 Msa0311720:intron 50.0%
TGGTCAATCCACTTGTGGTC+TGG + chr2_4:6615292-6615311 Msa0311720:intron 50.0%
!!! GGGAGGTTTTTGGTTCATGG+TGG + chr2_4:6615421-6615440 Msa0311720:intron 50.0%
CCTAAGGGCTTCTTCCTCAT+AGG - chr2_4:6615848-6615867 None:intergenic 50.0%
CCTATGAGGAAGAAGCCCTT+AGG + chr2_4:6615845-6615864 Msa0311720:CDS 50.0%
GAAGCTTCTGGTGTAGCAGA+AGG - chr2_4:6615892-6615911 None:intergenic 50.0%
GGACAGATGGTGCTTGTAGA+AGG - chr2_4:6615931-6615950 None:intergenic 50.0%
!! GTGAGAGTGGTTTTGCAGCT+AGG - chr2_4:6616060-6616079 None:intergenic 50.0%
TTGTGGCCCTCAGTTCATGT+GGG + chr2_4:6616094-6616113 Msa0311720:CDS 50.0%
GACATGCCCACATGAACTGA+GGG - chr2_4:6616103-6616122 None:intergenic 50.0%
AGACATGCCCACATGAACTG+AGG - chr2_4:6616104-6616123 None:intergenic 50.0%
!! TGGGAAGTGGTTCTGGTTTG+GGG + chr2_4:6616280-6616299 Msa0311720:CDS 50.0%
AACCGCCACATAGGATGGCT+TGG - chr2_4:6612260-6612279 None:intergenic 55.0%
CGGTAAACCGCCACATAGGA+TGG - chr2_4:6612265-6612284 None:intergenic 55.0%
TGGAACGCAGAAGGAGAGGT+TGG + chr2_4:6612461-6612480 Msa0311720:CDS 55.0%
GGAACGCAGAAGGAGAGGTT+GGG + chr2_4:6612462-6612481 Msa0311720:CDS 55.0%
GAACGCAGAAGGAGAGGTTG+GGG + chr2_4:6612463-6612482 Msa0311720:CDS 55.0%
TGGAGCTCCAACGGATAGAC+TGG - chr2_4:6613316-6613335 None:intergenic 55.0%
!! TCAACACGTGGTGGCTTTGG+GGG + chr2_4:6613916-6613935 Msa0311720:intron 55.0%
GTTAGCATCCAGTGGGAGCA+TGG + chr2_4:6614020-6614039 Msa0311720:intron 55.0%
GAGCATGGTCAACCCACCTT+TGG + chr2_4:6614035-6614054 Msa0311720:intron 55.0%
! GGAAACATGGTCTAGAGCCC+TGG - chr2_4:6614201-6614220 None:intergenic 55.0%
CTCCACCACTGTCCCTAAGA+AGG - chr2_4:6614366-6614385 None:intergenic 55.0%
! CAGTCTGGCTATGGGGCATT+CGG - chr2_4:6614558-6614577 None:intergenic 55.0%
!!! CGGCTGCACTCTGTTTTTGC+AGG - chr2_4:6615157-6615176 None:intergenic 55.0%
GAGCGTGGTCAATCCACTTG+TGG + chr2_4:6615287-6615306 Msa0311720:intron 55.0%
CCTTCACACTGTTTGCCCCA+TGG - chr2_4:6615819-6615838 None:intergenic 55.0%
CCATGGGGCAAACAGTGTGA+AGG + chr2_4:6615816-6615835 Msa0311720:CDS 55.0%
ACAAGCACCATCTGTCCGGA+AGG + chr2_4:6615934-6615953 Msa0311720:CDS 55.0%
CTTGTGGCCCTCAGTTCATG+TGG + chr2_4:6616093-6616112 Msa0311720:CDS 55.0%
! AAGGGAGGGACAGGTTTTGC+TGG + chr2_4:6616219-6616238 Msa0311720:CDS 55.0%
!! AAGTGGTTCTGGTTTGGGGC+TGG + chr2_4:6616284-6616303 Msa0311720:CDS 55.0%
GTCGCGGTAAACCGCCACAT+AGG - chr2_4:6612269-6612288 None:intergenic 60.0%
GCAGAAGGAGAGGTTGGGGA+AGG + chr2_4:6612467-6612486 Msa0311720:CDS 60.0%
! TGGGTTGACCATGCTCCCAC+TGG - chr2_4:6614031-6614050 None:intergenic 60.0%
CTGGACAGAGTTGGCGCAAC+TGG - chr2_4:6614634-6614653 None:intergenic 60.0%
GAGAGAAGTCAGGAGCGGAG+TGG + chr2_4:6615034-6615053 Msa0311720:intron 60.0%
AGAAGTCAGGAGCGGAGTGG+AGG + chr2_4:6615037-6615056 Msa0311720:intron 60.0%
GAAGTCAGGAGCGGAGTGGA+GGG + chr2_4:6615038-6615057 Msa0311720:intron 60.0%
AAGTCAGGAGCGGAGTGGAG+GGG + chr2_4:6615039-6615058 Msa0311720:intron 60.0%
CACCATCTGTCCGGAAGGCA+AGG + chr2_4:6615939-6615958 Msa0311720:CDS 60.0%
CTCCTTGCCTTCCGGACAGA+TGG - chr2_4:6615944-6615963 None:intergenic 60.0%
!! ACACGTGGTGGCTTTGGGGG+TGG + chr2_4:6613919-6613938 Msa0311720:intron 65.0%
!! CGTGGTGGCTTTGGGGGTGG+TGG + chr2_4:6613922-6613941 Msa0311720:intron 70.0%
!! GGTGGCTTTGGGGGTGGTGG+TGG + chr2_4:6613925-6613944 Msa0311720:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 6612237 6616657 6612237 ID=Msa0311720;Name=Msa0311720
chr2_4 mRNA 6612237 6616657 6612237 ID=Msa0311720-mRNA-1;Parent=Msa0311720;Name=Msa0311720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=150|1|1|1|0|0.5|2|328|304
chr2_4 exon 6612237 6612625 6612237 ID=Msa0311720-mRNA-1:exon:2542;Parent=Msa0311720-mRNA-1
chr2_4 exon 6615654 6616657 6615654 ID=Msa0311720-mRNA-1:exon:2543;Parent=Msa0311720-mRNA-1
chr2_4 five_prime_UTR 6612237 6612386 6612237 ID=Msa0311720-mRNA-1:five_prime_utr;Parent=Msa0311720-mRNA-1
chr2_4 CDS 6612387 6612625 6612387 ID=Msa0311720-mRNA-1:cds;Parent=Msa0311720-mRNA-1
chr2_4 CDS 6615654 6616329 6615654 ID=Msa0311720-mRNA-1:cds;Parent=Msa0311720-mRNA-1
chr2_4 three_prime_UTR 6616330 6616657 6616330 ID=Msa0311720-mRNA-1:three_prime_utr;Parent=Msa0311720-mRNA-1
Gene Sequence

>Msa0311720

ATGCCTCAGCGACATTCGAAGAACAACAACGATCTCGCGTTCTTCACCTACGATGAAAAGCGTAAACTCGGTTATGGAACGCAGAAGGAGAGGTTGGGGAAGGATTCCATCAAACCCTTCGATGCTTGTTCTCTCTGTCTCAAATCGTTGATTGATCCTATGAGCTGCCAAAAAGGTCACCTTTTCTGCAAAGAGTGCATTCTCGAATGCTTATTATCTCAGAAGAAAGACATTCAAAGGAGGCTTGTTGCACATTCTGCTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAAGAGAAATTAATGTTGCAGAAGGCTAAAGAGCTTGATGCATTTGATCAGCAAAATCATGGTGCTGTACCACAATACAGTGATAGAAATTATAACCGTGACAAGAATGGTTTCCATGGGGCAAACAGTGTGAAGGTCACTTCCTATGAGGAAGAAGCCCTTAGGACAATGAAGGCATTTTGGCTGCCTTCTGCTACACCAGAAGCTTCTGTTAAAGTAGAAGCTCCTTCTACAAGCACCATCTGTCCGGAAGGCAAGGAGAATCTAAAGTTAAAGACACTTTTTCCTGTCCAGTTCACTGAAGATACTAGTGAGCAGAAGAAATCGAATGCTCTTGATCGGAGCTACATTTGTCCTAGCTGCAAAACCACTCTCACCAATACAATGTCACTTGTGGCCCTCAGTTCATGTGGGCATGTCTTTTGCAAAAAATGTTCGGACAGATTTATGGCTGTGGATAAGGTTTGTCTTGTTTGCAACAAGGCATGTAAAGAGAGACATTTGGTTAATTTGAAGAAGGGAGGGACAGGTTTTGCTGGTCATGATGATAATCTTGAAGCCAAAGATTTCAAGCATTTGGGAAGTGGTTCTGGTTTGGGGCTGGTTAGACCTGCGATGAAGACTTAA

Protein sequence

>Msa0311720

MPQRHSKNNNDLAFFTYDEKRKLGYGTQKERLGKDSIKPFDACSLCLKSLIDPMSCQKGHLFCKECILECLLSQKKDIQRRLVAHSAQQKQEKEEEEEKLMLQKAKELDAFDQQNHGAVPQYSDRNYNRDKNGFHGANSVKVTSYEEEALRTMKAFWLPSATPEASVKVEAPSTSTICPEGKENLKLKTLFPVQFTEDTSEQKKSNALDRSYICPSCKTTLTNTMSLVALSSCGHVFCKKCSDRFMAVDKVCLVCNKACKERHLVNLKKGGTGFAGHDDNLEAKDFKHLGSGSGLGLVRPAMKT*