AlfalfaGEDB | Msa1378410

M. sativa cultivar zhongmu-4 / Msa1378410

KEGG: -
GO: GO:0001708 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009880 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0030154 GO:0032501 GO:0032502 GO:0045165 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0090421
PFAM: PF07227.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1378410	AES87984.2	97.175	1239	32	2	1	1239	1	1236	0.0	2469

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1378410	sp\|Q84TI3\|OBE4_ARATH	45.511	1136	520	26	156	1239	74	1162	0.0	762

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1378410	G7JTL7	97.175	1239	32	2	1	1239	1	1236	0.0	2469

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000910	Msa1378410	0.877111	8.164987e-69	-8.615850e-47
Msa0002560	Msa1378410	0.884159	2.432895e-71	-8.615850e-47
Msa0002710	Msa1378410	0.802399	5.715498e-49	-8.615850e-47
Msa0003220	Msa1378410	0.828611	8.167380e-55	-8.615850e-47
Msa0003630	Msa1378410	0.803605	3.219368e-49	-8.615850e-47
Msa0005270	Msa1378410	0.813979	1.945570e-51	-8.615850e-47
Msa0005620	Msa1378410	0.807653	4.549967e-50	-8.615850e-47
Msa0006110	Msa1378410	0.843497	1.350960e-58	-8.615850e-47
Msa0007440	Msa1378410	0.823177	1.593609e-53	-8.615850e-47
Msa0008200	Msa1378410	0.801516	8.679071e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1378410	MtrunA17_Chr4g0019561	94.592	1239	27	3	1	1239	1	1199	0.0	2388
Msa1378410	MtrunA17_Chr8g0376011	36.068	707	367	16	559	1234	145	797	1.01e-121	396
Msa1378410	MtrunA17_Chr5g0447621	37.665	454	268	9	788	1227	92	544	7.22e-88	296

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1378410	AT3G63500.2	45.511	1136	520	26	156	1239	74	1162	0.0	762
Msa1378410	AT3G63500.3	45.511	1136	520	26	156	1239	74	1162	0.0	762
Msa1378410	AT3G63500.1	51.815	799	349	14	451	1239	115	887	0.0	709
Msa1378410	AT1G14740.1	41.138	457	240	6	784	1238	304	733	3.49e-107	355
Msa1378410	AT5G48160.2	35.345	464	280	9	782	1227	90	551	1.33e-87	296
Msa1378410	AT5G48160.1	35.345	464	280	9	782	1227	90	551	1.33e-87	296
Msa1378410	AT3G07780.3	37.089	426	254	7	788	1202	95	517	2.38e-83	284
Msa1378410	AT3G07780.1	37.089	426	254	7	788	1202	95	517	2.38e-83	284
Msa1378410	AT3G07780.2	37.089	426	254	7	788	1202	106	528	5.32e-83	283

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Find 348 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACCCCATGATGCTTG+TGG	0.652227	tig0020061:+21227	None:intergenic
AAAACAGACCTTGTCGAGTA+AGG	0.476545	tig0020061:-22218	Msa1378410:CDS
AAAAGGGAAAGGAGTAGTGG+TGG	0.623501	tig0020061:-21014	Msa1378410:CDS
AAACGCAGAGCACATGAAAA+CGG	0.492306	tig0020061:+23331	None:intergenic
AAAGAGAACAGTGTTGTAGC+TGG	0.470049	tig0020061:-18895	Msa1378410:CDS
AAAGTTGTTCTTGTCCTTTC+TGG	0.088608	tig0020061:+20973	None:intergenic
AACAAACCCGAGTCAATTGA+AGG	0.536904	tig0020061:-21926	Msa1378410:CDS
AACATGCCCGGTAGATGACA+TGG	0.629167	tig0020061:-21735	Msa1378410:CDS
AACGATGACAGTCTTGCAAT+GGG	0.514322	tig0020061:-21623	Msa1378410:CDS
AACGGAGAAGGGAACAGATA+AGG	0.460915	tig0020061:-22002	Msa1378410:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGAATTATGAAGAGGTTA+AGG	-	tig0020061:18300-18319	Msa1378410:three_prime_UTR	30.0%
ATTATAAGCAGGAGAATGTA+AGG	-	tig0020061:18435-18454	Msa1378410:CDS	30.0%
GAGATAGGAATTTGATTCAT+AGG	-	tig0020061:18756-18775	Msa1378410:CDS	30.0%
TAGGAATTTGATTCATAGGT+CGG	-	tig0020061:18760-18779	Msa1378410:CDS	30.0%
AAAAAGAATGAATGTCGTTC+AGG	-	tig0020061:19313-19332	Msa1378410:intron	30.0%
GCAACAGATATTTCATTAGT+TGG	+	tig0020061:19472-19491	None:intergenic	30.0%
CTTATCATCAACATTACTTG+TGG	+	tig0020061:19512-19531	None:intergenic	30.0%
TTCATCAGTAACATCATTCT+CGG	+	tig0020061:19683-19702	None:intergenic	30.0%
ATCAACAATGTGAAGGATAA+AGG	-	tig0020061:19739-19758	Msa1378410:intron	30.0%
TACATGACACATATGAAAGA+GGG	-	tig0020061:20726-20745	Msa1378410:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0020061	gene	18064	23536	18064	ID=Msa1378410;Name=Msa1378410
tig0020061	mRNA	18064	23536	18064	ID=Msa1378410-mRNA-1;Parent=Msa1378410;Name=Msa1378410-mRNA-1;_AED=0.03;_eAED=0.03;_QI=244\|1\|1\|1\|1\|1\|2\|353\|1239
tig0020061	exon	18064	18973	18064	ID=Msa1378410-mRNA-1:exon:6077;Parent=Msa1378410-mRNA-1
tig0020061	exon	20130	23536	20130	ID=Msa1378410-mRNA-1:exon:6076;Parent=Msa1378410-mRNA-1
tig0020061	five_prime_UTR	23293	23536	23293	ID=Msa1378410-mRNA-1:five_prime_utr;Parent=Msa1378410-mRNA-1
tig0020061	CDS	20130	23292	20130	ID=Msa1378410-mRNA-1:cds;Parent=Msa1378410-mRNA-1
tig0020061	CDS	18417	18973	18417	ID=Msa1378410-mRNA-1:cds;Parent=Msa1378410-mRNA-1
tig0020061	three_prime_UTR	18064	18416	18064	ID=Msa1378410-mRNA-1:three_prime_utr;Parent=Msa1378410-mRNA-1

Gene Sequence

>Msa1378410

ATGAAGAGGTTAAGGTCAAGCGAAGATCTTCATTCGTATGGTGAAAAGAACGGTGGTGATAAGAATGGTGTGAAGGATTCATCGAATCTCAACCGTTCGTTTTCATCTACTGGTCAGAGAAGTTTTTATTATAAGCAGGAGAATGTAAGGAAGAGTTTAATTTCGTCGTCGTCTTCGTCGCGATACGATAGGGATCGAACGGTGGAGGAAGATCGGGAAGGTTCTAGATTGGTTAGGAAAAGATCTGAGCATGATTTTGATGGGTTTGATAGGAGGAAGGGTTTCGATCGGGATCGGGATCGGTATAGCCGGGACAGCCGGGATGGTGGGTACAGTGGAGGTGTTGATAGGAATATTGGGGGTGCTGAAAGGAATATTGGGGGTGCTGAAAGGAACAGTGGGGGTGCTGAAAGGAATTTTGGGGGTGTTGAAAGGAATAGTGGGGGTGGAGATAGGAATTTGATTCATAGGTCGGAGAGTTTCTGTGGAGGGTCAAGGAGGGAGTTTCCGAAGGGGTTTCGATCGGAGAGGGATCGATCGAGGAGGGAGGGGAGTGTGTCGTCGTGGAGGAGAGGATTGAAGGATTTTGATGAGAGTAGTAGAGGGAGTGGTGGTGGTAGTAGGGTTGAAGAGAGGGTGGTTAGGTCACCGAAGGGTTTTTCGAGGGATGTGAAATCACCCAGTTGGTCGAAGGATTCGGAGAGTGAGCAGTCGAAGAAGAGAAATTCGGAGTCTCCAAGGGTGTTTAGGGAGGTTAAGTCGAAATCTAAGTCGCCTTCTGTGTCTAAGGATTCGGAGAGTGAACAATCGAAGAGTGTTAGTGGTGTTGAGGTGAAGAAAAGCGAGGAGTTGTTGCAACAGGTTCAGAGTGGAAGTGGTAGTGAAATGGAAGAGGGGGAGCTTGAACCTGAACCGGTCCGTGAAACTGAACTGAAACCTGCTCCGAAAGATGAAGCATCGGGAAGTGAAGTCCAGCAAACCTCTGAGGACAAACAAGTGCATAAGAAAAAGAATGAATGTCGTTCAGGTGATGCAGATGTTGTTATGGAAGAAAAACAGACCTTGTCGAGTAAGGAAGAAGCAAAACATACGCAGGATATTGATTCTGAGGTAAAAGTTACAGGAAAGGAAGTTCTTGAGTTGCCTAAGACTCAAGATGATCCAACTAATGAAATATCTGTTGCTGAGAGTGAGATTGGAACCACAAGTAATGTTGATGATAAGAAGGACGAGTGTTTGAACGGGGATGATACTCGGTGTAAGGAGGAAACGGAGAAGGGAACAGATAAGGGGAAGGCGATGCTTAATGAAGAGGAGCGTGAGGAGGATAATGGTGTAGGTGGTAACAAACCCGAGTCAATTGAAGGCTCAACCGAGAATGATGTTACTGATGAAGTGAAGGGAGAAACAATGACGGAGAGTGTGAGTGTGATCAACAATGTGAAGGATAAAGGCAAAAGCGTCTCTGTCACACCTGATGTTGCACATTCTTCAAAAGATGGCTTGTGGATTGATAGAGGATCGAATGATCTTGCAACATGCCCGGTAGATGACATGGAAGGTCCAAGCACAAGAGGGTTCGAGCTTTTTTCTACCTCTCCTGTGAGAAAAGCAGAAAAGTCTGATAGCTCGGTTCTAAAAAAGGAGAACGATGACAGTCTTGCAATGGGCCAGCTTGACCTTTCTCTTAGCTTGCCGAATGTTCTGTTACCGATAGGAGCTCAGGAAGCAGCAACGCAAGCCCCTGGATCTCCCAGTCAAGCACGGAGTGTTCAGTCTCTAAGTAATACATTTTGTACTAACTCAGATGGTTTTACTGCATCAATGTCATTTTCAGGTTCCCAATCATTATATCACAATCCAAGTTGTTCTCTAACAAAAAATTCAGTGGACTATGAACAATCTGTTGGAAAATCAGTTGGCAGTCGCCCCTTGTTCCAGGGATTTGATTGGCAAGCCCTATCTCAGCAGGGTGATCCCAAACAGAAAGAAGTTCCCTCTAGTCAGAGAACTTCGATGAATGGGAACGGTTCTCTTTACCAGCCACAAGCATCATGGGGTGTTTTAGACACTCAAGCTTTGAAAGGTCAACATTCTCGGGCTCTAGAAGGAAGCTCAAAAATGGGCAGTGGGCTTGAAAAACAATTGAGTTTTCATAAGCAAATTTCAGGACAGTCAAGACGACATGATGATGTTCGGTCTCCTACGCAGAGTGTTGGGTCTCATGACAATGGATCAAATTATAGTTTTGAGAAAAAAAGGGAAAGGAGTAGTGGTGGTCTACATCGAACTACCAGCCAGAAAGGACAAGAACAACTTTTGATGGGTGGACTTGATTTTGTTAAGACAATCATTGCTAGAATTATTTCTGAATCTGTGCCCGTGATGTCGAGAAAGTTCCATGAAATGTCTGGACAGTACATGACACATATGAAAGAGGGTATTCGGGAACTCATGCTCAATGCAGATAGCCATGGTCAGATACTTGCTTTTCAAAAAATTCTGCAGAACAGGTCTGATATAACCTTGGATGTTCTAGTGAAGTGTCATCGAGTGCAACTGGAAATTCTGGTTGCAATAAAAACTGGTTTAGCCCATTATCTTCACCTAGGTGATAATATTTCATCTAATGATTTAGCTCAAGTTTTTCTAAACTTGAAGTGTAGGAATGTATCATGTCGAAGTCAGTTGCCGGTCGATGAATGTGATTGCAAGCTTTGTGTGCAGAAGAATGGTTTTTGCAGGGAATGTATGTGTCTTGTGTGCTCTAAGTTTGACAACGCGTCGAACACTGTTAGTTGGGTTGGGTGTGATGTTTGTCTTCACTGGTGTCATACTGACTGTGGATTGCGGGAATCTTATATTAGAAATGGACATAGTACTACTGGAACAAAAGGGACGACTGAGATGCAGTTTCATTGCATTGCTTGTGATCACCCTTCTGAGATGTTTGGCTTTGTCAAAGAGGTGTTTCAAAATTTTGCAAAAGAGTGGTCAGCCGAATCTCTTTACAAGGAACTTGAATATGTGAAGAGGATCTTTTCTGCCAGCAAGGATATAAGAGGGAGACAATTGCATGAGATTGCAGATCAAATGCTGCCAAGGTTGACAATTAAGTCAAACCTTCCTGAGGTTTTGAGACGCATCATGTCTTTCCTCTCTGATTGCGATTCTTCCAAATTAGCCCTGACAACGAACTTCTCTGGAAAGGAACAAGTCAAAGAGAACAGTGTTGTAGCTGGGCCCAGCCAGGAAGCTGCCTGGCTGAAATCTATTTATTCAGATAAGGCACCTCTGTTGGAAAGACCTGCAAGCATCCTTCCAAGATTTGACCAGAATGATAAAAGGACAATGGTGCAGGAGTTGCAGATGAGTAGTGTTCATAAAGACTTTGGTTTTGATGAATTGGACAGTATAATAAAAATCAAACATGCAGAGGCCAAAATGTTTCAATCGCGTGCTGACGATGCTAGGAGAGAAGCTGAAGGGTTGAAGCGCATTGCCCTTGCAAAGAATGAGAAAATTGAAGAAGAGTATGTCAACCGAATCACCAAGTTACGGTTCACTGAGACAGATGAAATGCGTAAGCGAAAGTTGGAAGAACTCCATGGATTAGAGAGGGCACATATGGAGTATTTGAACATGAAAATGAGAATGGAGTCAGACATCAAAGATCTGTTATCCAAAATGGAAGCAACTAAAATGAACCTTGCAATGTGA

Protein sequence

>Msa1378410

MKRLRSSEDLHSYGEKNGGDKNGVKDSSNLNRSFSSTGQRSFYYKQENVRKSLISSSSSSRYDRDRTVEEDREGSRLVRKRSEHDFDGFDRRKGFDRDRDRYSRDSRDGGYSGGVDRNIGGAERNIGGAERNSGGAERNFGGVERNSGGGDRNLIHRSESFCGGSRREFPKGFRSERDRSRREGSVSSWRRGLKDFDESSRGSGGGSRVEERVVRSPKGFSRDVKSPSWSKDSESEQSKKRNSESPRVFREVKSKSKSPSVSKDSESEQSKSVSGVEVKKSEELLQQVQSGSGSEMEEGELEPEPVRETELKPAPKDEASGSEVQQTSEDKQVHKKKNECRSGDADVVMEEKQTLSSKEEAKHTQDIDSEVKVTGKEVLELPKTQDDPTNEISVAESEIGTTSNVDDKKDECLNGDDTRCKEETEKGTDKGKAMLNEEEREEDNGVGGNKPESIEGSTENDVTDEVKGETMTESVSVINNVKDKGKSVSVTPDVAHSSKDGLWIDRGSNDLATCPVDDMEGPSTRGFELFSTSPVRKAEKSDSSVLKKENDDSLAMGQLDLSLSLPNVLLPIGAQEAATQAPGSPSQARSVQSLSNTFCTNSDGFTASMSFSGSQSLYHNPSCSLTKNSVDYEQSVGKSVGSRPLFQGFDWQALSQQGDPKQKEVPSSQRTSMNGNGSLYQPQASWGVLDTQALKGQHSRALEGSSKMGSGLEKQLSFHKQISGQSRRHDDVRSPTQSVGSHDNGSNYSFEKKRERSSGGLHRTTSQKGQEQLLMGGLDFVKTIIARIISESVPVMSRKFHEMSGQYMTHMKEGIRELMLNADSHGQILAFQKILQNRSDITLDVLVKCHRVQLEILVAIKTGLAHYLHLGDNISSNDLAQVFLNLKCRNVSCRSQLPVDECDCKLCVQKNGFCRECMCLVCSKFDNASNTVSWVGCDVCLHWCHTDCGLRESYIRNGHSTTGTKGTTEMQFHCIACDHPSEMFGFVKEVFQNFAKEWSAESLYKELEYVKRIFSASKDIRGRQLHEIADQMLPRLTIKSNLPEVLRRIMSFLSDCDSSKLALTTNFSGKEQVKENSVVAGPSQEAAWLKSIYSDKAPLLERPASILPRFDQNDKRTMVQELQMSSVHKDFGFDELDSIIKIKHAEAKMFQSRADDARREAEGLKRIALAKNEKIEEEYVNRITKLRFTETDEMRKRKLEELHGLERAHMEYLNMKMRMESDIKDLLSKMEATKMNLAM*