Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787680 | G7K4D9 | 95.926 | 270 | 11 | 0 | 1 | 270 | 1 | 270 | 0.0 | 541 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0639120 | Msa0787680 | 0.803539 | 3.322604e-49 | -8.615850e-47 |
| Msa0787680 | Msa0824540 | 0.863201 | 2.948444e-64 | -8.615850e-47 |
| Msa0787680 | Msa0863690 | 0.818895 | 1.543922e-52 | -8.615850e-47 |
| Msa0560470 | Msa0787680 | 0.800658 | 1.299553e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787680 | MtrunA17_Chr5g0445321 | 95.652 | 184 | 8 | 0 | 87 | 270 | 1 | 184 | 8.58e-132 | 370 |
| Msa0787680 | MtrunA17_Chr3g0114991 | 33.014 | 209 | 125 | 5 | 74 | 269 | 243 | 449 | 2.14e-33 | 126 |
| Msa0787680 | MtrunA17_Chr1g0156521 | 33.981 | 206 | 119 | 6 | 74 | 269 | 201 | 399 | 3.01e-30 | 117 |
| Msa0787680 | MtrunA17_Chr4g0042091 | 34.783 | 207 | 121 | 5 | 74 | 268 | 230 | 434 | 4.19e-28 | 111 |
| Msa0787680 | MtrunA17_Chr3g0104431 | 32.068 | 237 | 126 | 11 | 61 | 270 | 160 | 388 | 2.64e-24 | 100 |
| Msa0787680 | MtrunA17_Chr8g0376191 | 33.136 | 169 | 95 | 7 | 113 | 269 | 2 | 164 | 3.31e-19 | 82.4 |
| Msa0787680 | MtrunA17_Chr2g0280501 | 29.327 | 208 | 121 | 7 | 80 | 269 | 176 | 375 | 4.20e-17 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787680 | AT5G54630.1 | 36.574 | 216 | 112 | 8 | 74 | 268 | 258 | 469 | 2.89e-27 | 110 |
| Msa0787680 | AT4G27240.1 | 34.703 | 219 | 118 | 8 | 68 | 268 | 217 | 428 | 3.30e-25 | 103 |
| Msa0787680 | AT1G75710.1 | 30.870 | 230 | 122 | 7 | 74 | 269 | 231 | 457 | 2.01e-23 | 99.4 |
| Msa0787680 | AT4G27240.2 | 35.754 | 179 | 97 | 5 | 68 | 234 | 217 | 389 | 5.00e-22 | 95.1 |
| Msa0787680 | AT2G29660.1 | 30.045 | 223 | 125 | 8 | 74 | 269 | 153 | 371 | 3.59e-20 | 89.4 |
| Msa0787680 | AT1G11490.2 | 28.054 | 221 | 138 | 8 | 65 | 269 | 148 | 363 | 6.14e-16 | 77.0 |
| Msa0787680 | AT1G11490.1 | 28.054 | 221 | 138 | 8 | 65 | 269 | 148 | 363 | 6.14e-16 | 77.0 |
Find 45 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTCCCTTTGCCAAATTT+TGG | 0.172903 | 5_2:+73645588 | None:intergenic |
| TTTCCATCTACTGTGCTTCT+TGG | 0.204797 | 5_2:+73644732 | None:intergenic |
| ATAAGGCAGCCACCAAAATT+TGG | 0.275929 | 5_2:-73645600 | Msa0787680:CDS |
| ACAAACTCACTGATGTAATA+AGG | 0.337481 | 5_2:-73645617 | Msa0787680:CDS |
| GGAAGGTTAGAACAGTTCTA+AGG | 0.351359 | 5_2:-73644830 | Msa0787680:CDS |
| AGATCATGAACTTTCTTCAT+AGG | 0.351902 | 5_2:+73644660 | None:intergenic |
| CACATTCTTCACTCTTGCAT+TGG | 0.368988 | 5_2:+73644524 | None:intergenic |
| ACATTTGACATTGTCTTTCA+AGG | 0.372511 | 5_2:+73645644 | None:intergenic |
| ATAGTTTGCAGGATAATTGC+TGG | 0.375937 | 5_2:-73644489 | Msa0787680:CDS |
| AGCCGAGCCTGTGTGTTGTT+TGG | 0.410884 | 5_2:+73645471 | None:intergenic |
| AACCTTCCTCAGTGGCTTTG+CGG | 0.412088 | 5_2:+73644845 | None:intergenic |
| AAACATTTAAAGCAGACAAA+AGG | 0.418695 | 5_2:+73645738 | None:intergenic |
| AGCCTGTGTGTTGTTTGGCT+TGG | 0.421270 | 5_2:+73645476 | None:intergenic |
| CATCCAAGAAGCACAGTAGA+TGG | 0.426284 | 5_2:-73644735 | Msa0787680:CDS |
| AGGAAGAAATGCAAGCCTTA+TGG | 0.429141 | 5_2:-73645671 | Msa0787680:exon |
| ACTGTGCTTCTTGGATGCCT+TGG | 0.430435 | 5_2:+73644741 | None:intergenic |
| CTTTCTTCATAGGTTTCCCT+TGG | 0.432529 | 5_2:+73644670 | None:intergenic |
| ACAAACACACACAAATTAAG+AGG | 0.454752 | 5_2:-73645691 | Msa0787680:five_prime_UTR |
| GTCTTTCAAGGACAACCATA+AGG | 0.456733 | 5_2:+73645656 | None:intergenic |
| GAGTAGCTATGTTCTACAAA+AGG | 0.501056 | 5_2:-73645571 | Msa0787680:CDS |
| AACATTTAAAGCAGACAAAA+GGG | 0.510124 | 5_2:+73645739 | None:intergenic |
| AGCCACCAAAATTTGGCAAA+GGG | 0.512723 | 5_2:-73645593 | Msa0787680:CDS |
| AGATGATATTTCAGAAAGCA+TGG | 0.538196 | 5_2:-73644875 | Msa0787680:CDS |
| CAGCCACCAAAATTTGGCAA+AGG | 0.555527 | 5_2:-73645594 | Msa0787680:CDS |
| TTGAAAGACAATGTCAAATG+TGG | 0.555657 | 5_2:-73645642 | Msa0787680:CDS |
| GTTCTGAGTGTGACTCAACT+AGG | 0.563240 | 5_2:-73644428 | Msa0787680:CDS |
| GAGTGTGACTCAACTAGGCT+AGG | 0.568204 | 5_2:-73644423 | Msa0787680:CDS |
| CACCGCAAAGCCACTGAGGA+AGG | 0.573143 | 5_2:-73644847 | Msa0787680:CDS |
| GAAGGTTAGAACAGTTCTAA+GGG | 0.574783 | 5_2:-73644829 | Msa0787680:CDS |
| AGCCAAACAACACACAGGCT+CGG | 0.581716 | 5_2:-73645473 | Msa0787680:CDS |
| TTGAAAATTATGACAAAACA+AGG | 0.601697 | 5_2:+73644345 | None:intergenic |
| ACTGCAGTGAATGAAGTTGA+TGG | 0.605466 | 5_2:-73644465 | Msa0787680:CDS |
| TAGCTGGAATTTCCATGAGG+GGG | 0.606181 | 5_2:+73645511 | None:intergenic |
| TGTATGTGTATGTGCTCATG+TGG | 0.606339 | 5_2:+73645711 | None:intergenic |
| ACTACAATGAGATGTTTCCA+AGG | 0.610196 | 5_2:-73644687 | Msa0787680:CDS |
| AAACAAGGAAGAATAGAACT+AGG | 0.612460 | 5_2:+73644360 | None:intergenic |
| TCTAGCTGGAATTTCCATGA+GGG | 0.619119 | 5_2:+73645509 | None:intergenic |
| TTCCAAGCCAAACAACACAC+AGG | 0.628310 | 5_2:-73645478 | Msa0787680:CDS |
| AGCTGGAATTTCCATGAGGG+GGG | 0.644140 | 5_2:+73645512 | None:intergenic |
| CTAGCTGGAATTTCCATGAG+GGG | 0.652167 | 5_2:+73645510 | None:intergenic |
| ACTTGACAAAATCGACACGA+TGG | 0.658301 | 5_2:+73644627 | None:intergenic |
| CTACAATGAGATGTTTCCAA+GGG | 0.668592 | 5_2:-73644686 | Msa0787680:CDS |
| GTCTAGCTGGAATTTCCATG+AGG | 0.668741 | 5_2:+73645508 | None:intergenic |
| ACTGTTCTAACCTTCCTCAG+TGG | 0.694897 | 5_2:+73644837 | None:intergenic |
| TGAACACCGCAAAGCCACTG+AGG | 0.723545 | 5_2:-73644851 | Msa0787680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAATGTAATTTAAAAG+AGG | + | chr5_2:73644663-73644682 | None:intergenic | 10.0% |
| !!! | ATTTACTATTTATTTTATGT+AGG | - | chr5_2:73645108-73645127 | Msa0787680:intron | 10.0% |
| !! | TTATAAATGTAATTTAAAAG+AGG | + | chr5_2:73644663-73644682 | None:intergenic | 10.0% |
| !!! | ATTTACTATTTATTTTATGT+AGG | - | chr5_2:73645108-73645127 | Msa0787680:intron | 10.0% |
| !! | ACAAAGTACAATTTAATAAT+AGG | + | chr5_2:73645061-73645080 | None:intergenic | 15.0% |
| !! | ACAAAGTACAATTTAATAAT+AGG | + | chr5_2:73645061-73645080 | None:intergenic | 15.0% |
| !! | TTGAAATGTAAAAAGAGTTA+TGG | - | chr5_2:73644799-73644818 | Msa0787680:CDS | 20.0% |
| !!! | AAAGTGCTTATAAATAATGA+CGG | + | chr5_2:73644998-73645017 | None:intergenic | 20.0% |
| !!! | AAAAAGTTTTAATAGTTTGC+AGG | - | chr5_2:73645588-73645607 | Msa0787680:CDS | 20.0% |
| !! | TTGAAAATTATGACAAAACA+AGG | + | chr5_2:73645746-73645765 | None:intergenic | 20.0% |
| !! | TTGAAATGTAAAAAGAGTTA+TGG | - | chr5_2:73644799-73644818 | Msa0787680:CDS | 20.0% |
| !!! | AAAGTGCTTATAAATAATGA+CGG | + | chr5_2:73644998-73645017 | None:intergenic | 20.0% |
| !!! | AAAAAGTTTTAATAGTTTGC+AGG | - | chr5_2:73645588-73645607 | Msa0787680:CDS | 20.0% |
| !! | TTGAAAATTATGACAAAACA+AGG | + | chr5_2:73645746-73645765 | None:intergenic | 20.0% |
| !! | AACATTTAAAGCAGACAAAA+GGG | + | chr5_2:73644352-73644371 | None:intergenic | 25.0% |
| !! | AAACATTTAAAGCAGACAAA+AGG | + | chr5_2:73644353-73644372 | None:intergenic | 25.0% |
| !!! | AAATAGTTTGCTACATTATG+TGG | + | chr5_2:73644837-73644856 | None:intergenic | 25.0% |
| !! | TCTCAACAATTTTTCTTGAA+GGG | + | chr5_2:73645196-73645215 | None:intergenic | 25.0% |
| !! | ATCTCAACAATTTTTCTTGA+AGG | + | chr5_2:73645197-73645216 | None:intergenic | 25.0% |
| !! | AACATTTAAAGCAGACAAAA+GGG | + | chr5_2:73644352-73644371 | None:intergenic | 25.0% |
| !! | AAACATTTAAAGCAGACAAA+AGG | + | chr5_2:73644353-73644372 | None:intergenic | 25.0% |
| !!! | AAATAGTTTGCTACATTATG+TGG | + | chr5_2:73644837-73644856 | None:intergenic | 25.0% |
| !! | TCTCAACAATTTTTCTTGAA+GGG | + | chr5_2:73645196-73645215 | None:intergenic | 25.0% |
| !! | ATCTCAACAATTTTTCTTGA+AGG | + | chr5_2:73645197-73645216 | None:intergenic | 25.0% |
| ACAAACACACACAAATTAAG+AGG | - | chr5_2:73644397-73644416 | Msa0787680:CDS | 30.0% | |
| ACATTTGACATTGTCTTTCA+AGG | + | chr5_2:73644447-73644466 | None:intergenic | 30.0% | |
| TTGAAAGACAATGTCAAATG+TGG | - | chr5_2:73644446-73644465 | Msa0787680:CDS | 30.0% | |
| ACAAACTCACTGATGTAATA+AGG | - | chr5_2:73644471-73644490 | Msa0787680:CDS | 30.0% | |
| TATGTTGTGTTCATGCAAAT+AGG | + | chr5_2:73644754-73644773 | None:intergenic | 30.0% | |
| CATCAAAAACTTGACATCTA+CGG | + | chr5_2:73644933-73644952 | None:intergenic | 30.0% | |
| ! | TCCTCCACATTGTTAAATTT+TGG | - | chr5_2:73645151-73645170 | Msa0787680:intron | 30.0% |
| TCTGCCAAAATTTAACAATG+TGG | + | chr5_2:73645158-73645177 | None:intergenic | 30.0% | |
| AGATGATATTTCAGAAAGCA+TGG | - | chr5_2:73645213-73645232 | Msa0787680:intron | 30.0% | |
| !! | AAGTGAAGAAAAAGTATCCA+AGG | - | chr5_2:73645330-73645349 | Msa0787680:intron | 30.0% |
| AGATCATGAACTTTCTTCAT+AGG | + | chr5_2:73645431-73645450 | None:intergenic | 30.0% | |
| AAACAAGGAAGAATAGAACT+AGG | + | chr5_2:73645731-73645750 | None:intergenic | 30.0% | |
| ACAAACACACACAAATTAAG+AGG | - | chr5_2:73644397-73644416 | Msa0787680:CDS | 30.0% | |
| ACATTTGACATTGTCTTTCA+AGG | + | chr5_2:73644447-73644466 | None:intergenic | 30.0% | |
| TTGAAAGACAATGTCAAATG+TGG | - | chr5_2:73644446-73644465 | Msa0787680:CDS | 30.0% | |
| ACAAACTCACTGATGTAATA+AGG | - | chr5_2:73644471-73644490 | Msa0787680:CDS | 30.0% | |
| TATGTTGTGTTCATGCAAAT+AGG | + | chr5_2:73644754-73644773 | None:intergenic | 30.0% | |
| CATCAAAAACTTGACATCTA+CGG | + | chr5_2:73644933-73644952 | None:intergenic | 30.0% | |
| ! | TCCTCCACATTGTTAAATTT+TGG | - | chr5_2:73645151-73645170 | Msa0787680:intron | 30.0% |
| TCTGCCAAAATTTAACAATG+TGG | + | chr5_2:73645158-73645177 | None:intergenic | 30.0% | |
| AGATGATATTTCAGAAAGCA+TGG | - | chr5_2:73645213-73645232 | Msa0787680:intron | 30.0% | |
| !! | AAGTGAAGAAAAAGTATCCA+AGG | - | chr5_2:73645330-73645349 | Msa0787680:intron | 30.0% |
| AGATCATGAACTTTCTTCAT+AGG | + | chr5_2:73645431-73645450 | None:intergenic | 30.0% | |
| AAACAAGGAAGAATAGAACT+AGG | + | chr5_2:73645731-73645750 | None:intergenic | 30.0% | |
| GAGTAGCTATGTTCTACAAA+AGG | - | chr5_2:73644517-73644536 | Msa0787680:CDS | 35.0% | |
| ! | TTGGAAAAAACTAGTCTAGC+TGG | + | chr5_2:73644596-73644615 | None:intergenic | 35.0% |
| TTCTTACTACTGAACTCCTT+TGG | - | chr5_2:73644713-73644732 | Msa0787680:CDS | 35.0% | |
| GAACAACAAACTCTTTCCAA+AGG | + | chr5_2:73644732-73644751 | None:intergenic | 35.0% | |
| ! | CAGTATCAAACTTGTTTCCA+TGG | - | chr5_2:73644887-73644906 | Msa0787680:CDS | 35.0% |
| CAGACACTTTGTTAAATCCA+TGG | + | chr5_2:73644907-73644926 | None:intergenic | 35.0% | |
| AATAGCCGTCTAATTCAATG+TGG | + | chr5_2:73644965-73644984 | None:intergenic | 35.0% | |
| GTGCTTATAAATAATGACGG+AGG | + | chr5_2:73644995-73645014 | None:intergenic | 35.0% | |
| GCCAAAATTTAACAATGTGG+AGG | + | chr5_2:73645155-73645174 | None:intergenic | 35.0% | |
| !! | TGTTAAATTTTGGCAGAGCT+TGG | - | chr5_2:73645161-73645180 | Msa0787680:intron | 35.0% |
| ! | GAAGGTTAGAACAGTTCTAA+GGG | - | chr5_2:73645259-73645278 | Msa0787680:intron | 35.0% |
| ACTACAATGAGATGTTTCCA+AGG | - | chr5_2:73645401-73645420 | Msa0787680:intron | 35.0% | |
| CTACAATGAGATGTTTCCAA+GGG | - | chr5_2:73645402-73645421 | Msa0787680:intron | 35.0% | |
| ! | ATAGTTTGCAGGATAATTGC+TGG | - | chr5_2:73645599-73645618 | Msa0787680:CDS | 35.0% |
| GAGTAGCTATGTTCTACAAA+AGG | - | chr5_2:73644517-73644536 | Msa0787680:CDS | 35.0% | |
| ! | TTGGAAAAAACTAGTCTAGC+TGG | + | chr5_2:73644596-73644615 | None:intergenic | 35.0% |
| TTCTTACTACTGAACTCCTT+TGG | - | chr5_2:73644713-73644732 | Msa0787680:CDS | 35.0% | |
| GAACAACAAACTCTTTCCAA+AGG | + | chr5_2:73644732-73644751 | None:intergenic | 35.0% | |
| ! | CAGTATCAAACTTGTTTCCA+TGG | - | chr5_2:73644887-73644906 | Msa0787680:CDS | 35.0% |
| CAGACACTTTGTTAAATCCA+TGG | + | chr5_2:73644907-73644926 | None:intergenic | 35.0% | |
| AATAGCCGTCTAATTCAATG+TGG | + | chr5_2:73644965-73644984 | None:intergenic | 35.0% | |
| GTGCTTATAAATAATGACGG+AGG | + | chr5_2:73644995-73645014 | None:intergenic | 35.0% | |
| GCCAAAATTTAACAATGTGG+AGG | + | chr5_2:73645155-73645174 | None:intergenic | 35.0% | |
| !! | TGTTAAATTTTGGCAGAGCT+TGG | - | chr5_2:73645161-73645180 | Msa0787680:intron | 35.0% |
| ! | GAAGGTTAGAACAGTTCTAA+GGG | - | chr5_2:73645259-73645278 | Msa0787680:intron | 35.0% |
| ACTACAATGAGATGTTTCCA+AGG | - | chr5_2:73645401-73645420 | Msa0787680:intron | 35.0% | |
| CTACAATGAGATGTTTCCAA+GGG | - | chr5_2:73645402-73645421 | Msa0787680:intron | 35.0% | |
| ! | ATAGTTTGCAGGATAATTGC+TGG | - | chr5_2:73645599-73645618 | Msa0787680:CDS | 35.0% |
| TGTATGTGTATGTGCTCATG+TGG | + | chr5_2:73644380-73644399 | None:intergenic | 40.0% | |
| AGGAAGAAATGCAAGCCTTA+TGG | - | chr5_2:73644417-73644436 | Msa0787680:CDS | 40.0% | |
| GTCTTTCAAGGACAACCATA+AGG | + | chr5_2:73644435-73644454 | None:intergenic | 40.0% | |
| ATAAGGCAGCCACCAAAATT+TGG | - | chr5_2:73644488-73644507 | Msa0787680:CDS | 40.0% | |
| AGCCACCAAAATTTGGCAAA+GGG | - | chr5_2:73644495-73644514 | Msa0787680:CDS | 40.0% | |
| ! | CTACTCCCTTTGCCAAATTT+TGG | + | chr5_2:73644503-73644522 | None:intergenic | 40.0% |
| TCTAGCTGGAATTTCCATGA+GGG | + | chr5_2:73644582-73644601 | None:intergenic | 40.0% | |
| TGCAGCCACATTGAATTAGA+CGG | - | chr5_2:73644957-73644976 | Msa0787680:intron | 40.0% | |
| !! | ATTTTGGCAGAGCTTGGTAT+TGG | - | chr5_2:73645167-73645186 | Msa0787680:intron | 40.0% |
| GGAAGGTTAGAACAGTTCTA+AGG | - | chr5_2:73645258-73645277 | Msa0787680:intron | 40.0% | |
| TTTCCATCTACTGTGCTTCT+TGG | + | chr5_2:73645359-73645378 | None:intergenic | 40.0% | |
| CTTTCTTCATAGGTTTCCCT+TGG | + | chr5_2:73645421-73645440 | None:intergenic | 40.0% | |
| ACTTGACAAAATCGACACGA+TGG | + | chr5_2:73645464-73645483 | None:intergenic | 40.0% | |
| CACATTCTTCACTCTTGCAT+TGG | + | chr5_2:73645567-73645586 | None:intergenic | 40.0% | |
| ACTGCAGTGAATGAAGTTGA+TGG | - | chr5_2:73645623-73645642 | Msa0787680:CDS | 40.0% | |
| TGTATGTGTATGTGCTCATG+TGG | + | chr5_2:73644380-73644399 | None:intergenic | 40.0% | |
| AGGAAGAAATGCAAGCCTTA+TGG | - | chr5_2:73644417-73644436 | Msa0787680:CDS | 40.0% | |
| GTCTTTCAAGGACAACCATA+AGG | + | chr5_2:73644435-73644454 | None:intergenic | 40.0% | |
| ATAAGGCAGCCACCAAAATT+TGG | - | chr5_2:73644488-73644507 | Msa0787680:CDS | 40.0% | |
| AGCCACCAAAATTTGGCAAA+GGG | - | chr5_2:73644495-73644514 | Msa0787680:CDS | 40.0% | |
| ! | CTACTCCCTTTGCCAAATTT+TGG | + | chr5_2:73644503-73644522 | None:intergenic | 40.0% |
| TCTAGCTGGAATTTCCATGA+GGG | + | chr5_2:73644582-73644601 | None:intergenic | 40.0% | |
| TGCAGCCACATTGAATTAGA+CGG | - | chr5_2:73644957-73644976 | Msa0787680:intron | 40.0% | |
| !! | ATTTTGGCAGAGCTTGGTAT+TGG | - | chr5_2:73645167-73645186 | Msa0787680:intron | 40.0% |
| GGAAGGTTAGAACAGTTCTA+AGG | - | chr5_2:73645258-73645277 | Msa0787680:intron | 40.0% | |
| TTTCCATCTACTGTGCTTCT+TGG | + | chr5_2:73645359-73645378 | None:intergenic | 40.0% | |
| CTTTCTTCATAGGTTTCCCT+TGG | + | chr5_2:73645421-73645440 | None:intergenic | 40.0% | |
| ACTTGACAAAATCGACACGA+TGG | + | chr5_2:73645464-73645483 | None:intergenic | 40.0% | |
| CACATTCTTCACTCTTGCAT+TGG | + | chr5_2:73645567-73645586 | None:intergenic | 40.0% | |
| ACTGCAGTGAATGAAGTTGA+TGG | - | chr5_2:73645623-73645642 | Msa0787680:CDS | 40.0% | |
| CAGCCACCAAAATTTGGCAA+AGG | - | chr5_2:73644494-73644513 | Msa0787680:CDS | 45.0% | |
| ! | CTCCCTTTGCCAAATTTTGG+TGG | + | chr5_2:73644500-73644519 | None:intergenic | 45.0% |
| AGAAGATAATACCCCCCTCA+TGG | - | chr5_2:73644565-73644584 | Msa0787680:CDS | 45.0% | |
| TAGCTGGAATTTCCATGAGG+GGG | + | chr5_2:73644580-73644599 | None:intergenic | 45.0% | |
| CTAGCTGGAATTTCCATGAG+GGG | + | chr5_2:73644581-73644600 | None:intergenic | 45.0% | |
| GTCTAGCTGGAATTTCCATG+AGG | + | chr5_2:73644583-73644602 | None:intergenic | 45.0% | |
| TTCCAAGCCAAACAACACAC+AGG | - | chr5_2:73644610-73644629 | Msa0787680:CDS | 45.0% | |
| ACTGTTCTAACCTTCCTCAG+TGG | + | chr5_2:73645254-73645273 | None:intergenic | 45.0% | |
| ! | CATCCAAGAAGCACAGTAGA+TGG | - | chr5_2:73645353-73645372 | Msa0787680:intron | 45.0% |
| !! | CAATTTTGACGCGAAACACG+CGG | - | chr5_2:73645493-73645512 | Msa0787680:CDS | 45.0% |
| ! | GTTCTGAGTGTGACTCAACT+AGG | - | chr5_2:73645660-73645679 | Msa0787680:CDS | 45.0% |
| CAGCCACCAAAATTTGGCAA+AGG | - | chr5_2:73644494-73644513 | Msa0787680:CDS | 45.0% | |
| ! | CTCCCTTTGCCAAATTTTGG+TGG | + | chr5_2:73644500-73644519 | None:intergenic | 45.0% |
| AGAAGATAATACCCCCCTCA+TGG | - | chr5_2:73644565-73644584 | Msa0787680:CDS | 45.0% | |
| TAGCTGGAATTTCCATGAGG+GGG | + | chr5_2:73644580-73644599 | None:intergenic | 45.0% | |
| CTAGCTGGAATTTCCATGAG+GGG | + | chr5_2:73644581-73644600 | None:intergenic | 45.0% | |
| GTCTAGCTGGAATTTCCATG+AGG | + | chr5_2:73644583-73644602 | None:intergenic | 45.0% | |
| TTCCAAGCCAAACAACACAC+AGG | - | chr5_2:73644610-73644629 | Msa0787680:CDS | 45.0% | |
| ACTGTTCTAACCTTCCTCAG+TGG | + | chr5_2:73645254-73645273 | None:intergenic | 45.0% | |
| ! | CATCCAAGAAGCACAGTAGA+TGG | - | chr5_2:73645353-73645372 | Msa0787680:intron | 45.0% |
| !! | CAATTTTGACGCGAAACACG+CGG | - | chr5_2:73645493-73645512 | Msa0787680:CDS | 45.0% |
| ! | GTTCTGAGTGTGACTCAACT+AGG | - | chr5_2:73645660-73645679 | Msa0787680:CDS | 45.0% |
| AGCTGGAATTTCCATGAGGG+GGG | + | chr5_2:73644579-73644598 | None:intergenic | 50.0% | |
| !! | AGCCTGTGTGTTGTTTGGCT+TGG | + | chr5_2:73644615-73644634 | None:intergenic | 50.0% |
| AGCCAAACAACACACAGGCT+CGG | - | chr5_2:73644615-73644634 | Msa0787680:CDS | 50.0% | |
| ! | AACACACAGGCTCGGCTTTT+CGG | - | chr5_2:73644623-73644642 | Msa0787680:CDS | 50.0% |
| ! | AACCTTCCTCAGTGGCTTTG+CGG | + | chr5_2:73645246-73645265 | None:intergenic | 50.0% |
| ACTGTGCTTCTTGGATGCCT+TGG | + | chr5_2:73645350-73645369 | None:intergenic | 50.0% | |
| GAGTGTGACTCAACTAGGCT+AGG | - | chr5_2:73645665-73645684 | Msa0787680:CDS | 50.0% | |
| AGCTGGAATTTCCATGAGGG+GGG | + | chr5_2:73644579-73644598 | None:intergenic | 50.0% | |
| !! | AGCCTGTGTGTTGTTTGGCT+TGG | + | chr5_2:73644615-73644634 | None:intergenic | 50.0% |
| AGCCAAACAACACACAGGCT+CGG | - | chr5_2:73644615-73644634 | Msa0787680:CDS | 50.0% | |
| ! | AACACACAGGCTCGGCTTTT+CGG | - | chr5_2:73644623-73644642 | Msa0787680:CDS | 50.0% |
| ! | AACCTTCCTCAGTGGCTTTG+CGG | + | chr5_2:73645246-73645265 | None:intergenic | 50.0% |
| ACTGTGCTTCTTGGATGCCT+TGG | + | chr5_2:73645350-73645369 | None:intergenic | 50.0% | |
| GAGTGTGACTCAACTAGGCT+AGG | - | chr5_2:73645665-73645684 | Msa0787680:CDS | 50.0% | |
| ! | AGCCGAGCCTGTGTGTTGTT+TGG | + | chr5_2:73644620-73644639 | None:intergenic | 55.0% |
| TGAACACCGCAAAGCCACTG+AGG | - | chr5_2:73645237-73645256 | Msa0787680:intron | 55.0% | |
| ! | AGCCGAGCCTGTGTGTTGTT+TGG | + | chr5_2:73644620-73644639 | None:intergenic | 55.0% |
| TGAACACCGCAAAGCCACTG+AGG | - | chr5_2:73645237-73645256 | Msa0787680:intron | 55.0% | |
| CACCGCAAAGCCACTGAGGA+AGG | - | chr5_2:73645241-73645260 | Msa0787680:intron | 60.0% | |
| CACCGCAAAGCCACTGAGGA+AGG | - | chr5_2:73645241-73645260 | Msa0787680:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 73644341 | 73645769 | 73644341 | ID=Msa0787680;Name=Msa0787680 |
| chr5_2 | mRNA | 73644341 | 73645769 | 73644341 | ID=Msa0787680-mRNA-1;Parent=Msa0787680;Name=Msa0787680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=84|1|0.5|1|1|1|2|0|270 |
| chr5_2 | exon | 73644341 | 73644933 | 73644341 | ID=Msa0787680-mRNA-1:exon:22446;Parent=Msa0787680-mRNA-1 |
| chr5_2 | exon | 73645466 | 73645769 | 73645466 | ID=Msa0787680-mRNA-1:exon:22445;Parent=Msa0787680-mRNA-1 |
| chr5_2 | five_prime_UTR | 73645686 | 73645769 | 73645686 | ID=Msa0787680-mRNA-1:five_prime_utr;Parent=Msa0787680-mRNA-1 |
| chr5_2 | CDS | 73645466 | 73645685 | 73645466 | ID=Msa0787680-mRNA-1:cds;Parent=Msa0787680-mRNA-1 |
| chr5_2 | CDS | 73644341 | 73644933 | 73644341 | ID=Msa0787680-mRNA-1:cds;Parent=Msa0787680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
