AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0560470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560470 MtrunA17_Chr4g0050521 98.448 451 6 1 1 450 1 451 0.0 917
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560470 AT2G13840.1 62.619 420 151 3 31 448 17 432 0.0 541

Find 123 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCTCTTGTTGATGATTT+TGG 0.031208 4_1:-59768637 Msa0560470:CDS
CAAACCTTGTAATTGTTTCT+AGG 0.169257 4_1:+59765624 None:intergenic
AACAAATTTAACAATAAAAT+TGG 0.172762 4_1:+59765360 None:intergenic
TTGATCATTGTTTACCTCTT+TGG 0.224468 4_1:-59765547 Msa0560470:CDS
CCTTACAGTGAAGGGATCTT+TGG 0.253884 4_1:+59768994 None:intergenic
CACTTCCCAGTTCAGATTCA+TGG 0.274753 4_1:+59765759 None:intergenic
CCTCATTTCTCTTCATATAT+AGG 0.280119 4_1:-59768958 Msa0560470:five_prime_UTR
CTATATGGTGCAATGCTATA+AGG 0.299389 4_1:-59765688 Msa0560470:CDS
CAATGCTATAAGGGAATTAT+TGG 0.306066 4_1:-59765678 Msa0560470:CDS
GATGACCCATGAACAAGTTT+TGG 0.306632 4_1:-59768716 Msa0560470:CDS
CGGGCTACATGGAGCCTTCC+GGG 0.310253 4_1:+59767346 None:intergenic
GTAGAATCGGCTCGCAAATA+TGG 0.314220 4_1:-59768066 Msa0560470:CDS
AAAAGTGATGGAAGGCTTGC+AGG 0.316738 4_1:-59767006 Msa0560470:intron
TTAAGGTAGCTAGGCCTATA+TGG 0.320672 4_1:-59765703 Msa0560470:CDS
CTAGAAACAATTACAAGGTT+TGG 0.330990 4_1:-59765623 Msa0560470:CDS
TGTAACTGAATGGGTTTCAT+TGG 0.360755 4_1:-59768683 Msa0560470:CDS
TAAAAGCCAAAACTTGTTCA+TGG 0.361148 4_1:+59768710 None:intergenic
TAGAAACAATTACAAGGTTT+GGG 0.368543 4_1:-59765622 Msa0560470:CDS
AAAATCCTGTTGCTATCATT+AGG 0.375927 4_1:-59767068 Msa0560470:CDS
TTGCCGTTCTGGCTCATCCA+TGG 0.379810 4_1:-59767098 Msa0560470:CDS
GAGCATGTTTGTAGGATTGC+AGG 0.382471 4_1:-59767382 Msa0560470:CDS
TTCCAACGTTTCTACCAGTC+AGG 0.399060 4_1:-59765471 Msa0560470:CDS
TTAGCATATTACAGCAGTAT+TGG 0.401822 4_1:-59767520 Msa0560470:CDS
GCGATACCATCTCCCATAAC+TGG 0.402455 4_1:+59768826 None:intergenic
AGGACACCATGAATCTGAAC+TGG 0.403868 4_1:-59765765 Msa0560470:CDS
GATGAAGTAGCGAAAGAAGA+AGG 0.406465 4_1:+59768655 None:intergenic
AACCTCCTAATGATAGCAAC+AGG 0.410613 4_1:+59767063 None:intergenic
TAATATGCTAAAACGTGAAC+AGG 0.417023 4_1:+59767532 None:intergenic
AAGGGTGAGTGAGTTTGTTA+CGG 0.421407 4_1:+59768920 None:intergenic
TTAAATGGGAGCATGTTTGT+AGG 0.422997 4_1:-59767390 Msa0560470:CDS
CCAAAGATCCCTTCACTGTA+AGG 0.423262 4_1:-59768994 Msa0560470:five_prime_UTR
TTAAAAGAAGCAGGCCTTCA+TGG 0.425114 4_1:-59767042 Msa0560470:CDS
CTTATAGCATTGCACCATAT+AGG 0.426022 4_1:+59765689 None:intergenic
CAATTCAAACAAGAGCAATA+AGG 0.426821 4_1:-59768788 Msa0560470:CDS
GATGGAAAATGAAGAGTTTG+AGG 0.430917 4_1:-59765510 Msa0560470:CDS
ACGGGCTACATGGAGCCTTC+CGG 0.436221 4_1:+59767345 None:intergenic
CAAATCCTTTCCACAATACA+AGG 0.438699 4_1:+59765571 None:intergenic
TATATGGTGCAATGCTATAA+GGG 0.441866 4_1:-59765687 Msa0560470:CDS
TTCTAAGTCTCTATGAGAAC+CGG 0.445315 4_1:+59765440 None:intergenic
AAGTCATGCAAAACTAGTAC+TGG 0.451309 4_1:+59765728 None:intergenic
CAACCATAGCACGGGCTACA+TGG 0.457224 4_1:+59767335 None:intergenic
CGAGCCGATTCTACAGCCTC+GGG 0.458504 4_1:+59768075 None:intergenic
AGGGTGAGTGAGTTTGTTAC+GGG 0.459051 4_1:+59768921 None:intergenic
GCTCTCTCAACAACCTTAGA+AGG 0.460070 4_1:+59768529 None:intergenic
TCTGACAGATCACGATACTA+TGG 0.460637 4_1:-59768106 Msa0560470:CDS
TGCCGTTCTGGCTCATCCAT+GGG 0.473635 4_1:-59767097 Msa0560470:CDS
CATCCCCGAGGCTGTAGAAT+CGG 0.477174 4_1:-59768079 Msa0560470:CDS
ATGACTTTCTTAAGGTAGCT+AGG 0.478259 4_1:-59765712 Msa0560470:CDS
TTTATTGCTTCCTCCACCAC+AGG 0.488429 4_1:+59767144 None:intergenic
AACCGGAGTTCCTCCCTGAC+TGG 0.502354 4_1:+59765457 None:intergenic
AAAAGCCAAAACTTGTTCAT+GGG 0.503915 4_1:+59768711 None:intergenic
TAAAACTTACGCCGTTCATG+TGG 0.507053 4_1:+59768506 None:intergenic
CTCAATCCAGTTATGGGAGA+TGG 0.507268 4_1:-59768832 Msa0560470:exon
ATTAGGAGGTTAAAAGAAGC+AGG 0.511562 4_1:-59767051 Msa0560470:CDS
TTGGTTAAGTAGCCAAGAGA+TGG 0.514042 4_1:-59765528 Msa0560470:CDS
TATTGGACCATCAAAATTTG+AGG 0.515732 4_1:-59767503 Msa0560470:CDS
GGGAAGTGAACCTGTGGTGG+AGG 0.520171 4_1:-59767154 Msa0560470:CDS
ATGAAGTAGCGAAAGAAGAA+GGG 0.523100 4_1:+59768656 None:intergenic
GAAGAGAAATGAGGAAGGGT+AGG 0.523647 4_1:+59768967 None:intergenic
TGTAGACCTCCATCCCATGA+AGG 0.525586 4_1:+59767028 None:intergenic
TAAAAGAAGCAGGCCTTCAT+GGG 0.526089 4_1:-59767041 Msa0560470:CDS
TTCACCCTTGTATTGTGGAA+AGG 0.529199 4_1:-59765576 Msa0560470:CDS
ATTGGAGGGTCAGACTATCA+TGG 0.530154 4_1:-59765794 Msa0560470:CDS
GCGAGCCGATTCTACAGCCT+CGG 0.530385 4_1:+59768074 None:intergenic
GCCCGTGCTATGGTTGAAGC+AGG 0.533657 4_1:-59767328 Msa0560470:CDS
GCTCCATGTAGCCCGTGCTA+TGG 0.537065 4_1:-59767338 Msa0560470:CDS
AACGTTGGAAAGCTTCAACT+TGG 0.537287 4_1:+59765484 None:intergenic
CTCTTCATATATAGGTTCAG+AGG 0.537326 4_1:-59768950 Msa0560470:five_prime_UTR
CAGGGGAAGTGAACCTGTGG+TGG 0.538470 4_1:-59767157 Msa0560470:CDS
AACAATAATATCAGAAACGT+TGG 0.540630 4_1:+59765275 None:intergenic
TACCAGTCAGGGAGGAACTC+CGG 0.543925 4_1:-59765459 Msa0560470:CDS
AGAAGCAGGCCTTCATGGGA+TGG 0.546814 4_1:-59767037 Msa0560470:CDS
GGAGGTTCACCCTTGTATTG+TGG 0.547408 4_1:-59765581 Msa0560470:CDS
AAGAAGAATAAGAACAGAGG+TGG 0.548356 4_1:-59768751 Msa0560470:CDS
CTAACCTAGAAACAATTACA+AGG 0.549045 4_1:-59765628 Msa0560470:CDS
GTTAGTATTAGACGGTTCCT+CGG 0.549211 4_1:+59765646 None:intergenic
GCAGGCAACGGAGTTGCTCC+CGG 0.551611 4_1:-59767364 Msa0560470:CDS
ATTGTACTAACTTCAACACC+TGG 0.552254 4_1:+59768030 None:intergenic
GAAGGGATCTTTGGAGTCAC+AGG 0.552421 4_1:+59769003 None:intergenic
GTTTCTAGGTTAGTATTAGA+CGG 0.556827 4_1:+59765638 None:intergenic
GGGTCAGACTATCATGGAAG+AGG 0.560598 4_1:-59765788 Msa0560470:CDS
CAATATTACTTGGAGTAAGC+AGG 0.571257 4_1:+59767253 None:intergenic
AAGAAGAAGAATAAGAACAG+AGG 0.572930 4_1:-59768754 Msa0560470:CDS
ATGGAGGTCTACAAAAGTGA+TGG 0.578050 4_1:-59767018 Msa0560470:CDS
ATCCTGTTGCTATCATTAGG+AGG 0.579375 4_1:-59767065 Msa0560470:CDS
TCCCTGACTGGTAGAAACGT+TGG 0.579843 4_1:+59765469 None:intergenic
ACCTGCTTCAACCATAGCAC+GGG 0.581188 4_1:+59767327 None:intergenic
AACCTGCTTCAACCATAGCA+CGG 0.582016 4_1:+59767326 None:intergenic
TTTGGGGTGCAGAAGCCTGT+TGG 0.583868 4_1:-59768619 Msa0560470:CDS
GTTTGTAGGATTGCAGGCAA+CGG 0.584225 4_1:-59767376 Msa0560470:CDS
TCCAACGTTTCTACCAGTCA+GGG 0.584764 4_1:-59765470 Msa0560470:CDS
TATGGCATTAAGATAATCCC+AGG 0.585730 4_1:-59768048 Msa0560470:CDS
GTTGAGAGAGCCCACATGAA+CGG 0.586954 4_1:-59768517 Msa0560470:CDS
CCTATATATGAAGAGAAATG+AGG 0.589138 4_1:+59768958 None:intergenic
AGTGACCTGGCTGATGCCTA+CGG 0.590587 4_1:-59765827 Msa0560470:CDS
CAAAGATCCCTTCACTGTAA+GGG 0.590742 4_1:-59768993 Msa0560470:five_prime_UTR
TGTCACTCTAAATGCAGTGA+TGG 0.597504 4_1:-59768562 Msa0560470:CDS
TGCCCATGGATGAGCCAGAA+CGG 0.598033 4_1:+59767095 None:intergenic
ACAGATCACGATACTATGGC+AGG 0.600390 4_1:-59768102 Msa0560470:CDS
GCAACGGAGTTGCTCCCGGA+AGG 0.600663 4_1:-59767360 Msa0560470:CDS
TAGGTTACCCTTACAGTGAA+GGG 0.603982 4_1:+59768986 None:intergenic
AAAGGCCGTAGGCATCAGCC+AGG 0.611891 4_1:+59765822 None:intergenic
GTAGGTTACCCTTACAGTGA+AGG 0.613045 4_1:+59768985 None:intergenic
TATATGAAGAGAAATGAGGA+AGG 0.613178 4_1:+59768962 None:intergenic
ATATGAAGAGAAATGAGGAA+GGG 0.626865 4_1:+59768963 None:intergenic
AGCAGGCCTTCATGGGATGG+AGG 0.629146 4_1:-59767034 Msa0560470:CDS
TCAGACTATCATGGAAGAGG+AGG 0.633037 4_1:-59765785 Msa0560470:CDS
TGGTGGAGACACTGAAGCAG+AGG 0.633552 4_1:-59767557 Msa0560470:CDS
CATGCAAAACTAGTACTGGA+AGG 0.634426 4_1:+59765732 None:intergenic
ATTATTGGAGTGTTATGCCG+AGG 0.638655 4_1:-59765663 Msa0560470:CDS
AGGTCTACAAAAGTGATGGA+AGG 0.642912 4_1:-59767014 Msa0560470:CDS
TTGTACTAACTTCAACACCT+GGG 0.643477 4_1:+59768031 None:intergenic
TCTTGGCTACTTAACCAAAG+AGG 0.654559 4_1:+59765533 None:intergenic
AAAACTTACGCCGTTCATGT+GGG 0.655200 4_1:+59768507 None:intergenic
TTATCTTCGAGCAAAGAACA+TGG 0.660434 4_1:-59767443 Msa0560470:CDS
TTTCAGGGGAAGTGAACCTG+TGG 0.661634 4_1:-59767160 Msa0560470:intron
GTATGCAGCATATAGTGACC+TGG 0.671490 4_1:-59765840 Msa0560470:intron
GGACACCATGAATCTGAACT+GGG 0.676928 4_1:-59765764 Msa0560470:CDS
AAATCCTTTCCACAATACAA+GGG 0.689638 4_1:+59765572 None:intergenic
TACTATGGCAGGCATCCCCG+AGG 0.703124 4_1:-59768091 Msa0560470:CDS
AACGTTTCTACCAGTCAGGG+AGG 0.703221 4_1:-59765467 Msa0560470:CDS
GAGCCGATTCTACAGCCTCG+GGG 0.740138 4_1:+59768076 None:intergenic
AAAATGATTTGTGATACTGG+GGG 0.788482 4_1:-59767123 Msa0560470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGTTTGAATTATTTA+AGG - chr4_1:59765810-59765829 Msa0560470:CDS 10.0%
!!! ATTATGGTTATTATTTTATA+AGG - chr4_1:59765911-59765930 Msa0560470:intron 10.0%
!! AACAAATTTAACAATAAAAT+TGG + chr4_1:59768893-59768912 None:intergenic 10.0%
!!! AATTTTATTGTTAAATTTGT+TGG - chr4_1:59768892-59768911 Msa0560470:five_prime_UTR 10.0%
!!! AAAAAAGATTGAATTTTTTG+GGG + chr4_1:59765373-59765392 None:intergenic 15.0%
!!! GAAAAAAGATTGAATTTTTT+GGG + chr4_1:59765374-59765393 None:intergenic 15.0%
!!! AGAAAAAAGATTGAATTTTT+TGG + chr4_1:59765375-59765394 None:intergenic 15.0%
!!! TTTTAAATTTGTAACTGAAT+GGG - chr4_1:59765558-59765577 Msa0560470:CDS 15.0%
!!! TACAGTTTTTTTGTTTTATT+TGG + chr4_1:59765866-59765885 None:intergenic 15.0%
!! TTAATTAGAATCAATTATGA+AGG - chr4_1:59766555-59766574 Msa0560470:intron 15.0%
!!! TTTTTTCTTAACTACAAAAA+TGG + chr4_1:59767052-59767071 None:intergenic 15.0%
!!! TTTTTGTAGTTAAGAAAAAA+TGG - chr4_1:59767052-59767071 Msa0560470:CDS 15.0%
!!! ATTTTTTATGTTTCCAAAAT+CGG + chr4_1:59768158-59768177 None:intergenic 15.0%
!!! CTTTTAAATTTGTAACTGAA+TGG - chr4_1:59765557-59765576 Msa0560470:CDS 20.0%
!!! TTAGTACAATATTTTATCCA+AGG - chr4_1:59766233-59766252 Msa0560470:intron 20.0%
!!! TATTTTGAATGAATCAATTC+TGG - chr4_1:59766404-59766423 Msa0560470:intron 20.0%
!!! AATTAACTTGAACTTGAAAT+TGG + chr4_1:59766541-59766560 None:intergenic 20.0%
!!! ATAAGTTTTTGTCAAACATA+AGG - chr4_1:59766776-59766795 Msa0560470:intron 20.0%
!!! TAAGTTTTTGTCAAACATAA+GGG - chr4_1:59766777-59766796 Msa0560470:intron 20.0%
!!! ATAAAAATGATTTGTGATAC+TGG - chr4_1:59767124-59767143 Msa0560470:CDS 20.0%
!!! TAAAAATGATTTGTGATACT+GGG - chr4_1:59767125-59767144 Msa0560470:CDS 20.0%
!!! CATAAAAAATCGTTATTTTG+CGG - chr4_1:59768168-59768187 Msa0560470:intron 20.0%
!!! TTTTTTGGGGTAATTTTCTT+AGG + chr4_1:59765360-59765379 None:intergenic 25.0%
!!! TTTTGTTTTTTGATTGTCGT+AGG - chr4_1:59765774-59765793 Msa0560470:CDS 25.0%
! AGGATAATGAAGTCAATTTA+AGG - chr4_1:59765931-59765950 Msa0560470:intron 25.0%
! TAATGAAGTCAATTTAAGGA+TGG - chr4_1:59765935-59765954 Msa0560470:intron 25.0%
!! TTTATTGCATTTTCCAAAGA+TGG - chr4_1:59766016-59766035 Msa0560470:intron 25.0%
!! ATTGATTTCCTTTGTAGTTT+AGG - chr4_1:59766069-59766088 Msa0560470:intron 25.0%
! CTTAAGTTTGAAAATTACCT+TGG + chr4_1:59766253-59766272 None:intergenic 25.0%
! GGACACATTTACATAAAATT+AGG - chr4_1:59766461-59766480 Msa0560470:intron 25.0%
!! CAATTGATTTAGTGTATGTT+TGG + chr4_1:59766617-59766636 None:intergenic 25.0%
! AAAGCTTAACAAGCTAAAAA+TGG - chr4_1:59766834-59766853 Msa0560470:intron 25.0%
!! TTAAGCATCTTGTATTTTCA+GGG - chr4_1:59767075-59767094 Msa0560470:CDS 25.0%
!! AAAAATGATTTGTGATACTG+GGG - chr4_1:59767126-59767145 Msa0560470:CDS 25.0%
! TCTCATAAAAACCAAAACTA+AGG - chr4_1:59767325-59767344 Msa0560470:CDS 25.0%
! TCACTAAATCTTACAATTTG+AGG + chr4_1:59767504-59767523 None:intergenic 25.0%
!!! CGATATAATAGTTTTAAACC+TGG - chr4_1:59767572-59767591 Msa0560470:intron 25.0%
! AATCGTCACTAAACAAAATT+GGG - chr4_1:59767618-59767637 Msa0560470:intron 25.0%
!! AAGAAAACTACCATTTGTTA+TGG + chr4_1:59767762-59767781 None:intergenic 25.0%
! TGGATGATAATTAGATTTGA+TGG - chr4_1:59767818-59767837 Msa0560470:intron 25.0%
! GGATGATAATTAGATTTGAT+GGG - chr4_1:59767819-59767838 Msa0560470:intron 25.0%
! AATCACTGTGATTTCATATA+TGG + chr4_1:59767946-59767965 None:intergenic 25.0%
!! AAGCGATAATTTTCAATACT+CGG - chr4_1:59768042-59768061 Msa0560470:CDS 25.0%
!!! TGATCTTGCTTGTTAATTTT+TGG - chr4_1:59768388-59768407 Msa0560470:intron 25.0%
! TAGAAACAATTACAAGGTTT+GGG - chr4_1:59768628-59768647 Msa0560470:CDS 25.0%
! AACAATAATATCAGAAACGT+TGG + chr4_1:59768978-59768997 None:intergenic 25.0%
!!! TTGATGATTTTCTACACATT+TGG - chr4_1:59769011-59769030 Msa0560470:five_prime_UTR 25.0%
ATATGAAGAGAAATGAGGAA+GGG + chr4_1:59765290-59765309 None:intergenic 30.0%
TATATGAAGAGAAATGAGGA+AGG + chr4_1:59765291-59765310 None:intergenic 30.0%
CCTATATATGAAGAGAAATG+AGG + chr4_1:59765295-59765314 None:intergenic 30.0%
CCTCATTTCTCTTCATATAT+AGG - chr4_1:59765292-59765311 Msa0560470:three_prime_UTR 30.0%
! GTAATTTTCTTAGGTCGTAA+GGG + chr4_1:59765351-59765370 None:intergenic 30.0%
AAAAAGCTCAATCCAGTTAT+GGG - chr4_1:59765412-59765431 Msa0560470:three_prime_UTR 30.0%
CAATTCAAACAAGAGCAATA+AGG - chr4_1:59765462-59765481 Msa0560470:CDS 30.0%
AAGAAGAAGAATAAGAACAG+AGG - chr4_1:59765496-59765515 Msa0560470:CDS 30.0%
! AAAAGCCAAAACTTGTTCAT+GGG + chr4_1:59765542-59765561 None:intergenic 30.0%
! TAAAAGCCAAAACTTGTTCA+TGG + chr4_1:59765543-59765562 None:intergenic 30.0%
!!! TCATCTCTTGTTGATGATTT+TGG - chr4_1:59765613-59765632 Msa0560470:CDS 30.0%
!!! CATCTCTTGTTGATGATTTT+GGG - chr4_1:59765614-59765633 Msa0560470:CDS 30.0%
!!! ATCTCTTGTTGATGATTTTG+GGG - chr4_1:59765615-59765634 Msa0560470:CDS 30.0%
GCTTGAACACTTAATGATTA+TGG - chr4_1:59765895-59765914 Msa0560470:intron 30.0%
GAAAGTTAACTGTATTGTAG+AGG - chr4_1:59765969-59765988 Msa0560470:intron 30.0%
AAAATGAGCCTAAACTACAA+AGG + chr4_1:59766080-59766099 None:intergenic 30.0%
TGTTACCATTTGTTCATAAC+AGG - chr4_1:59766108-59766127 Msa0560470:intron 30.0%
TTTCACCTGTTATGAACAAA+TGG + chr4_1:59766116-59766135 None:intergenic 30.0%
! TTGATGCTTGTTGATTGAAT+TGG - chr4_1:59766277-59766296 Msa0560470:intron 30.0%
CAATTCTGGTATAAATGAGT+TGG - chr4_1:59766418-59766437 Msa0560470:intron 30.0%
! TAAATGAGTTGGATGTAATG+TGG - chr4_1:59766429-59766448 Msa0560470:intron 30.0%
! TAGGTTGAACGATAAATTTG+AGG - chr4_1:59766480-59766499 Msa0560470:intron 30.0%
!!! AAGTCCTTTTTTTTCTCCAT+TGG - chr4_1:59766643-59766662 Msa0560470:intron 30.0%
AGAACCAATGGAGAAAAAAA+AGG + chr4_1:59766650-59766669 None:intergenic 30.0%
TAATATGCTAAAACGTGAAC+AGG + chr4_1:59766721-59766740 None:intergenic 30.0%
TTAGCATATTACAGCAGTAT+TGG - chr4_1:59766730-59766749 Msa0560470:intron 30.0%
TATTGGACCATCAAAATTTG+AGG - chr4_1:59766747-59766766 Msa0560470:intron 30.0%
! TTTTTGTCAAACATAAGGGA+CGG - chr4_1:59766781-59766800 Msa0560470:intron 30.0%
AGCTAAAAATGGCTCTTAAA+TGG - chr4_1:59766845-59766864 Msa0560470:intron 30.0%
GCTAAAAATGGCTCTTAAAT+GGG - chr4_1:59766846-59766865 Msa0560470:intron 30.0%
! GTTAAGCATCTTGTATTTTC+AGG - chr4_1:59767074-59767093 Msa0560470:CDS 30.0%
! TAAGCATCTTGTATTTTCAG+GGG - chr4_1:59767076-59767095 Msa0560470:CDS 30.0%
! AAAATGATTTGTGATACTGG+GGG - chr4_1:59767127-59767146 Msa0560470:CDS 30.0%
AAAATCCTGTTGCTATCATT+AGG - chr4_1:59767182-59767201 Msa0560470:intron 30.0%
CATAAAAACCAAAACTAAGG+TGG - chr4_1:59767328-59767347 Msa0560470:CDS 30.0%
ACTTTGTCAATTGTCATACA+AGG - chr4_1:59767355-59767374 Msa0560470:CDS 30.0%
TGTGATGTTATCAAATCATC+AGG - chr4_1:59767449-59767468 Msa0560470:CDS 30.0%
CAATCGTCACTAAACAAAAT+TGG - chr4_1:59767617-59767636 Msa0560470:intron 30.0%
ATCGCTTCACTAATATGATT+AGG + chr4_1:59768029-59768048 None:intergenic 30.0%
! AATTTTCAATACTCGGAATC+AGG - chr4_1:59768049-59768068 Msa0560470:CDS 30.0%
! ATTTTCAATACTCGGAATCA+GGG - chr4_1:59768050-59768069 Msa0560470:CDS 30.0%
TTTGATATTGCAATGAAACG+TGG - chr4_1:59768117-59768136 Msa0560470:CDS 30.0%
TGTTGTCACAATTGTGTAAT+AGG - chr4_1:59768321-59768340 Msa0560470:intron 30.0%
! AGTTTTGCATGACTTTCTTA+AGG - chr4_1:59768530-59768549 Msa0560470:CDS 30.0%
TATATGGTGCAATGCTATAA+GGG - chr4_1:59768563-59768582 Msa0560470:CDS 30.0%
CAATGCTATAAGGGAATTAT+TGG - chr4_1:59768572-59768591 Msa0560470:CDS 30.0%
! GTTTCTAGGTTAGTATTAGA+CGG + chr4_1:59768615-59768634 None:intergenic 30.0%
CTAACCTAGAAACAATTACA+AGG - chr4_1:59768622-59768641 Msa0560470:CDS 30.0%
! CAAACCTTGTAATTGTTTCT+AGG + chr4_1:59768629-59768648 None:intergenic 30.0%
CTAGAAACAATTACAAGGTT+TGG - chr4_1:59768627-59768646 Msa0560470:CDS 30.0%
AAATCCTTTCCACAATACAA+GGG + chr4_1:59768681-59768700 None:intergenic 30.0%
TTGATCATTGTTTACCTCTT+TGG - chr4_1:59768703-59768722 Msa0560470:CDS 30.0%
CTCTTCATATATAGGTTCAG+AGG - chr4_1:59765300-59765319 Msa0560470:three_prime_UTR 35.0%
! GGTAATTTTCTTAGGTCGTA+AGG + chr4_1:59765352-59765371 None:intergenic 35.0%
CAAAAAGCTCAATCCAGTTA+TGG - chr4_1:59765411-59765430 Msa0560470:three_prime_UTR 35.0%
AAGAAGAATAAGAACAGAGG+TGG - chr4_1:59765499-59765518 Msa0560470:CDS 35.0%
! TGTAACTGAATGGGTTTCAT+TGG - chr4_1:59765567-59765586 Msa0560470:CDS 35.0%
ATGAAGTAGCGAAAGAAGAA+GGG + chr4_1:59765597-59765616 None:intergenic 35.0%
AAGTCAATTTAAGGATGGTG+TGG - chr4_1:59765940-59765959 Msa0560470:intron 35.0%
!!! TCCATCTCCACTTATTTTAG+AGG + chr4_1:59765995-59766014 None:intergenic 35.0%
TTTCCAAAGATGGTTGTCTA+AGG - chr4_1:59766026-59766045 Msa0560470:intron 35.0%
TATGGCATTAAGATAATCCC+AGG - chr4_1:59766202-59766221 Msa0560470:intron 35.0%
TTGTACTAACTTCAACACCT+GGG + chr4_1:59766222-59766241 None:intergenic 35.0%
ATTGTACTAACTTCAACACC+TGG + chr4_1:59766223-59766242 None:intergenic 35.0%
! TGTTGATTGAATTGGCACTT+TGG - chr4_1:59766285-59766304 Msa0560470:intron 35.0%
TAATTGTCCAAGTGCATGTT+TGG - chr4_1:59766362-59766381 Msa0560470:intron 35.0%
GATGTAATGTGGTTTATGTC+TGG - chr4_1:59766440-59766459 Msa0560470:intron 35.0%
AGGCTGAAATTCAATTGTAG+AGG - chr4_1:59766500-59766519 Msa0560470:intron 35.0%
!!! ATGTTTGGTTCCACTTTTTG+AGG + chr4_1:59766602-59766621 None:intergenic 35.0%
!! TCTAGCTCCTCAAATTTTGA+TGG + chr4_1:59766757-59766776 None:intergenic 35.0%
TTATCTTCGAGCAAAGAACA+TGG - chr4_1:59766807-59766826 Msa0560470:intron 35.0%
! TTAAATGGGAGCATGTTTGT+AGG - chr4_1:59766860-59766879 Msa0560470:intron 35.0%
ATCAAAAAGATATCGGGCAA+AGG + chr4_1:59766971-59766990 None:intergenic 35.0%
! TTTGCCCGATATCTTTTTGA+TGG - chr4_1:59766970-59766989 Msa0560470:intron 35.0%
TCCACCATCAAAAAGATATC+GGG + chr4_1:59766977-59766996 None:intergenic 35.0%
GTCCACCATCAAAAAGATAT+CGG + chr4_1:59766978-59766997 None:intergenic 35.0%
CAATATTACTTGGAGTAAGC+AGG + chr4_1:59767000-59767019 None:intergenic 35.0%
GAAGGCAACACAATATTACT+TGG + chr4_1:59767010-59767029 None:intergenic 35.0%
ATCTAGCAATCAACAAGTGA+AGG + chr4_1:59767028-59767047 None:intergenic 35.0%
!!! ACAGGATTTTTTAATGCCCA+TGG + chr4_1:59767172-59767191 None:intergenic 35.0%
ATTAGGAGGTTAAAAGAAGC+AGG - chr4_1:59767199-59767218 Msa0560470:intron 35.0%
! AAGTAGATCCACCTTAGTTT+TGG + chr4_1:59767339-59767358 None:intergenic 35.0%
ATAACAAGTGAAGTGATGCA+TGG - chr4_1:59767545-59767564 Msa0560470:CDS 35.0%
!! TAAGCTGTTTTGTCATTTCC+AGG + chr4_1:59767593-59767612 None:intergenic 35.0%
! GGTTATTACGTAAGTGTTGT+GGG + chr4_1:59767707-59767726 None:intergenic 35.0%
! TGGTTATTACGTAAGTGTTG+TGG + chr4_1:59767708-59767727 None:intergenic 35.0%
! TAATGACTTGTGCATTCACT+TGG + chr4_1:59767728-59767747 None:intergenic 35.0%
TCTGTGTGTTCCATAACAAA+TGG - chr4_1:59767749-59767768 Msa0560470:intron 35.0%
ATCATCCAATGTCCACAAAA+AGG + chr4_1:59767806-59767825 None:intergenic 35.0%
CTTCATACAGTCTCTTTATG+TGG + chr4_1:59767905-59767924 None:intergenic 35.0%
!!! TCGGAATCAGGGTTTTAAAT+GGG - chr4_1:59768061-59768080 Msa0560470:CDS 35.0%
AAAATCGGATGTTACTGCAT+TGG + chr4_1:59768143-59768162 None:intergenic 35.0%
! AATGCAGTAACATCCGATTT+TGG - chr4_1:59768142-59768161 Msa0560470:intron 35.0%
TGTTCGTTTATGACTAGACA+TGG + chr4_1:59768245-59768264 None:intergenic 35.0%
ACAACACAATGAGATGTAGT+AGG + chr4_1:59768307-59768326 None:intergenic 35.0%
AAGTCATGCAAAACTAGTAC+TGG + chr4_1:59768525-59768544 None:intergenic 35.0%
ATGACTTTCTTAAGGTAGCT+AGG - chr4_1:59768538-59768557 Msa0560470:CDS 35.0%
CTTATAGCATTGCACCATAT+AGG + chr4_1:59768564-59768583 None:intergenic 35.0%
CTATATGGTGCAATGCTATA+AGG - chr4_1:59768562-59768581 Msa0560470:CDS 35.0%
CAAATCCTTTCCACAATACA+AGG + chr4_1:59768682-59768701 None:intergenic 35.0%
! ACTCTTCATTTTCCATCTCT+TGG + chr4_1:59768737-59768756 None:intergenic 35.0%
GATGGAAAATGAAGAGTTTG+AGG - chr4_1:59768740-59768759 Msa0560470:CDS 35.0%
TTCTAAGTCTCTATGAGAAC+CGG + chr4_1:59768813-59768832 None:intergenic 35.0%
CAAAGATCCCTTCACTGTAA+GGG - chr4_1:59765257-59765276 Msa0560470:three_prime_UTR 40.0%
TAGGTTACCCTTACAGTGAA+GGG + chr4_1:59765267-59765286 None:intergenic 40.0%
!! AAGGGTGAGTGAGTTTGTTA+CGG + chr4_1:59765333-59765352 None:intergenic 40.0%
! ATTGAGCTTTTTGCCTGAAG+CGG + chr4_1:59765404-59765423 None:intergenic 40.0%
! GATGACCCATGAACAAGTTT+TGG - chr4_1:59765534-59765553 Msa0560470:CDS 40.0%
GATGAAGTAGCGAAAGAAGA+AGG + chr4_1:59765598-59765617 None:intergenic 40.0%
CAGAAGCCTGTTGGAAAAAA+TGG - chr4_1:59765640-59765659 Msa0560470:CDS 40.0%
!!! CTGTCACCATTTTTTCCAAC+AGG + chr4_1:59765649-59765668 None:intergenic 40.0%
TGTCACTCTAAATGCAGTGA+TGG - chr4_1:59765688-59765707 Msa0560470:CDS 40.0%
! TGGCTTTTTGTCTCCTTCTA+AGG - chr4_1:59765708-59765727 Msa0560470:CDS 40.0%
AAAACTTACGCCGTTCATGT+GGG + chr4_1:59765746-59765765 None:intergenic 40.0%
TAAAACTTACGCCGTTCATG+TGG + chr4_1:59765747-59765766 None:intergenic 40.0%
!! GTAGAGGCCTCTAAAATAAG+TGG - chr4_1:59765985-59766004 Msa0560470:intron 40.0%
!! GCCTCTAAAATAAGTGGAGA+TGG - chr4_1:59765991-59766010 Msa0560470:intron 40.0%
ATGCCTTAGACAACCATCTT+TGG + chr4_1:59766032-59766051 None:intergenic 40.0%
TCTGACAGATCACGATACTA+TGG - chr4_1:59766144-59766163 Msa0560470:intron 40.0%
TGTAGAACCAAACATGCACT+TGG + chr4_1:59766372-59766391 None:intergenic 40.0%
!! AAGTGCATGTTTGGTTCTAC+AGG - chr4_1:59766371-59766390 Msa0560470:intron 40.0%
!! AGTGCATGTTTGGTTCTACA+GGG - chr4_1:59766372-59766391 Msa0560470:intron 40.0%
CTACTTACCTCCTCAAAAAG+TGG - chr4_1:59766589-59766608 Msa0560470:intron 40.0%
!!! TTTGGTTCCACTTTTTGAGG+AGG + chr4_1:59766599-59766618 None:intergenic 40.0%
ATCCTGTTGCTATCATTAGG+AGG - chr4_1:59767185-59767204 Msa0560470:intron 40.0%
AACCTCCTAATGATAGCAAC+AGG + chr4_1:59767190-59767209 None:intergenic 40.0%
TTAAAAGAAGCAGGCCTTCA+TGG - chr4_1:59767208-59767227 Msa0560470:intron 40.0%
TAAAAGAAGCAGGCCTTCAT+GGG - chr4_1:59767209-59767228 Msa0560470:intron 40.0%
ATGGAGGTCTACAAAAGTGA+TGG - chr4_1:59767232-59767251 Msa0560470:intron 40.0%
! AGGTCTACAAAAGTGATGGA+AGG - chr4_1:59767236-59767255 Msa0560470:intron 40.0%
TCCAATGTCCACAAAAAGGT+GGG + chr4_1:59767802-59767821 None:intergenic 40.0%
ATCCAATGTCCACAAAAAGG+TGG + chr4_1:59767803-59767822 None:intergenic 40.0%
GTCTCTTTATGTGGATCAGA+AGG + chr4_1:59767896-59767915 None:intergenic 40.0%
AAAGAGACTGTATGAAGCCT+AGG - chr4_1:59767908-59767927 Msa0560470:intron 40.0%
ATCATGGGATGAATAGCAGA+TGG + chr4_1:59767992-59768011 None:intergenic 40.0%
CTGCTATTCATCCCATGATA+TGG - chr4_1:59767993-59768012 Msa0560470:intron 40.0%
!! GCAAGAAGCATCCATATCAT+GGG + chr4_1:59768007-59768026 None:intergenic 40.0%
!!! CTCGGAATCAGGGTTTTAAA+TGG - chr4_1:59768060-59768079 Msa0560470:CDS 40.0%
!!! CGGAATCAGGGTTTTAAATG+GGG - chr4_1:59768062-59768081 Msa0560470:CDS 40.0%
!!! GGAATCAGGGTTTTAAATGG+GGG - chr4_1:59768063-59768082 Msa0560470:CDS 40.0%
GAGATGTAGTAGGCAGTATT+CGG + chr4_1:59768297-59768316 None:intergenic 40.0%
! TCCAATTTTCAAAAGGCCGT+AGG + chr4_1:59768442-59768461 None:intergenic 40.0%
!! TACGGCCTTTTGAAAATTGG+AGG - chr4_1:59768441-59768460 Msa0560470:intron 40.0%
!! ACGGCCTTTTGAAAATTGGA+GGG - chr4_1:59768442-59768461 Msa0560470:intron 40.0%
! CTGACCCTCCAATTTTCAAA+AGG + chr4_1:59768449-59768468 None:intergenic 40.0%
! CATGCAAAACTAGTACTGGA+AGG + chr4_1:59768521-59768540 None:intergenic 40.0%
TTAAGGTAGCTAGGCCTATA+TGG - chr4_1:59768547-59768566 Msa0560470:CDS 40.0%
! ATTATTGGAGTGTTATGCCG+AGG - chr4_1:59768587-59768606 Msa0560470:CDS 40.0%
GTTAGTATTAGACGGTTCCT+CGG + chr4_1:59768607-59768626 None:intergenic 40.0%
TGAACCTCCCTTAAAAATGC+GGG + chr4_1:59768658-59768677 None:intergenic 40.0%
GTGAACCTCCCTTAAAAATG+CGG + chr4_1:59768659-59768678 None:intergenic 40.0%
TTCACCCTTGTATTGTGGAA+AGG - chr4_1:59768674-59768693 Msa0560470:CDS 40.0%
TCTTGGCTACTTAACCAAAG+AGG + chr4_1:59768720-59768739 None:intergenic 40.0%
TTGGTTAAGTAGCCAAGAGA+TGG - chr4_1:59768722-59768741 Msa0560470:CDS 40.0%
AACGTTGGAAAGCTTCAACT+TGG + chr4_1:59768769-59768788 None:intergenic 40.0%
CCTTACAGTGAAGGGATCTT+TGG + chr4_1:59765259-59765278 None:intergenic 45.0%
CCAAAGATCCCTTCACTGTA+AGG - chr4_1:59765256-59765275 Msa0560470:three_prime_UTR 45.0%
GTAGGTTACCCTTACAGTGA+AGG + chr4_1:59765268-59765287 None:intergenic 45.0%
GAAGAGAAATGAGGAAGGGT+AGG + chr4_1:59765286-59765305 None:intergenic 45.0%
!! AGGGTGAGTGAGTTTGTTAC+GGG + chr4_1:59765332-59765351 None:intergenic 45.0%
! TTTTTCTTCTCCACCGCTTC+AGG - chr4_1:59765388-59765407 Msa0560470:three_prime_UTR 45.0%
CTCAATCCAGTTATGGGAGA+TGG - chr4_1:59765418-59765437 Msa0560470:three_prime_UTR 45.0%
GCTCTCTCAACAACCTTAGA+AGG + chr4_1:59765724-59765743 None:intergenic 45.0%
TTTAAGGATGGTGTGGCTGA+TGG - chr4_1:59765947-59765966 Msa0560470:intron 45.0%
ACAGATCACGATACTATGGC+AGG - chr4_1:59766148-59766167 Msa0560470:intron 45.0%
!! GTAGAATCGGCTCGCAAATA+TGG - chr4_1:59766184-59766203 Msa0560470:intron 45.0%
CTTGTGTTGCCTCTAACTAG+AGG - chr4_1:59766312-59766331 Msa0560470:intron 45.0%
TGTTGCCTCTAACTAGAGGA+GGG - chr4_1:59766316-59766335 Msa0560470:intron 45.0%
TGGGCAAACATCAGAACCAA+TGG + chr4_1:59766662-59766681 None:intergenic 45.0%
TCTGATGTTTGCCCATCTAC+TGG - chr4_1:59766667-59766686 Msa0560470:intron 45.0%
GAGCATGTTTGTAGGATTGC+AGG - chr4_1:59766868-59766887 Msa0560470:intron 45.0%
GTTTGTAGGATTGCAGGCAA+CGG - chr4_1:59766874-59766893 Msa0560470:intron 45.0%
AACCTGCTTCAACCATAGCA+CGG + chr4_1:59766927-59766946 None:intergenic 45.0%
! GCCCGATATCTTTTTGATGG+TGG - chr4_1:59766973-59766992 Msa0560470:intron 45.0%
TTTATTGCTTCCTCCACCAC+AGG + chr4_1:59767109-59767128 None:intergenic 45.0%
! AAAAGTGATGGAAGGCTTGC+AGG - chr4_1:59767244-59767263 Msa0560470:intron 45.0%
CCAATGTCCACAAAAAGGTG+GGG + chr4_1:59767801-59767820 None:intergenic 45.0%
TGTATGAAGCCTAGGCTTAG+TGG - chr4_1:59767916-59767935 Msa0560470:intron 45.0%
TATGGTCAACCACTAAGCCT+AGG + chr4_1:59767928-59767947 None:intergenic 45.0%
!! GGCAAGAAGCATCCATATCA+TGG + chr4_1:59768008-59768027 None:intergenic 45.0%
!! ATGGTTAGCCTCTATCTCAC+CGG + chr4_1:59768226-59768245 None:intergenic 45.0%
GTATGCAGCATATAGTGACC+TGG - chr4_1:59768410-59768429 Msa0560470:intron 45.0%
!! GCCTACGGCCTTTTGAAAAT+TGG - chr4_1:59768438-59768457 Msa0560470:intron 45.0%
ATTGGAGGGTCAGACTATCA+TGG - chr4_1:59768456-59768475 Msa0560470:intron 45.0%
TCAGACTATCATGGAAGAGG+AGG - chr4_1:59768465-59768484 Msa0560470:intron 45.0%
AGGACACCATGAATCTGAAC+TGG - chr4_1:59768485-59768504 Msa0560470:intron 45.0%
GGACACCATGAATCTGAACT+GGG - chr4_1:59768486-59768505 Msa0560470:intron 45.0%
CACTTCCCAGTTCAGATTCA+TGG + chr4_1:59768494-59768513 None:intergenic 45.0%
! TGGGAGAACCCGCATTTTTA+AGG - chr4_1:59768647-59768666 Msa0560470:CDS 45.0%
! GGGAGAACCCGCATTTTTAA+GGG - chr4_1:59768648-59768667 Msa0560470:CDS 45.0%
!! AGAACCCGCATTTTTAAGGG+AGG - chr4_1:59768651-59768670 Msa0560470:CDS 45.0%
TTCCAACGTTTCTACCAGTC+AGG - chr4_1:59768779-59768798 Msa0560470:CDS 45.0%
TCCAACGTTTCTACCAGTCA+GGG - chr4_1:59768780-59768799 Msa0560470:CDS 45.0%
!! GAAGGGATCTTTGGAGTCAC+AGG + chr4_1:59765250-59765269 None:intergenic 50.0%
GCGATACCATCTCCCATAAC+TGG + chr4_1:59765427-59765446 None:intergenic 50.0%
GTTGAGAGAGCCCACATGAA+CGG - chr4_1:59765733-59765752 Msa0560470:CDS 50.0%
GTGTTGCCTCTAACTAGAGG+AGG - chr4_1:59766315-59766334 Msa0560470:intron 50.0%
GTTGCCTCTAACTAGAGGAG+GGG - chr4_1:59766317-59766336 Msa0560470:intron 50.0%
TTGCCTCTAACTAGAGGAGG+GGG - chr4_1:59766318-59766337 Msa0560470:intron 50.0%
ACCTGCTTCAACCATAGCAC+GGG + chr4_1:59766926-59766945 None:intergenic 50.0%
TTTCAGGGGAAGTGAACCTG+TGG - chr4_1:59767090-59767109 Msa0560470:CDS 50.0%
TGTAGACCTCCATCCCATGA+AGG + chr4_1:59767225-59767244 None:intergenic 50.0%
! TGCACTACCCCACCTTTTTG+TGG - chr4_1:59767791-59767810 Msa0560470:intron 50.0%
! CCCCACCTTTTTGTGGACAT+TGG - chr4_1:59767798-59767817 Msa0560470:intron 50.0%
ACTCATCACTACCGCCAACT+TGG - chr4_1:59768195-59768214 Msa0560470:intron 50.0%
CTCATCACTACCGCCAACTT+GGG - chr4_1:59768196-59768215 Msa0560470:intron 50.0%
GGGTCAGACTATCATGGAAG+AGG - chr4_1:59768462-59768481 Msa0560470:intron 50.0%
GGAGGTTCACCCTTGTATTG+TGG - chr4_1:59768669-59768688 Msa0560470:CDS 50.0%
TCCCTGACTGGTAGAAACGT+TGG + chr4_1:59768784-59768803 None:intergenic 50.0%
AACGTTTCTACCAGTCAGGG+AGG - chr4_1:59768783-59768802 Msa0560470:CDS 50.0%
! GAGCTTTTTGCCTGAAGCGG+TGG + chr4_1:59765401-59765420 None:intergenic 55.0%
! TTTGGGGTGCAGAAGCCTGT+TGG - chr4_1:59765631-59765650 Msa0560470:CDS 55.0%
CATCCCCGAGGCTGTAGAAT+CGG - chr4_1:59766171-59766190 Msa0560470:intron 55.0%
TGCCTCTAACTAGAGGAGGG+GGG - chr4_1:59766319-59766338 Msa0560470:intron 55.0%
TTCCCCCCTCCTCTAGTTAG+AGG + chr4_1:59766324-59766343 None:intergenic 55.0%
GTTTGCCCATCTACTGGCAG+TGG - chr4_1:59766673-59766692 Msa0560470:intron 55.0%
CTCCACCACTGCCAGTAGAT+GGG + chr4_1:59766681-59766700 None:intergenic 55.0%
TCTCCACCACTGCCAGTAGA+TGG + chr4_1:59766682-59766701 None:intergenic 55.0%
TGGTGGAGACACTGAAGCAG+AGG - chr4_1:59766693-59766712 Msa0560470:intron 55.0%
! CAACCATAGCACGGGCTACA+TGG + chr4_1:59766918-59766937 None:intergenic 55.0%
!! TTGCCGTTCTGGCTCATCCA+TGG - chr4_1:59767152-59767171 Msa0560470:CDS 55.0%
!! TGCCGTTCTGGCTCATCCAT+GGG - chr4_1:59767153-59767172 Msa0560470:CDS 55.0%
TGCCCATGGATGAGCCAGAA+CGG + chr4_1:59767158-59767177 None:intergenic 55.0%
AGAAGCAGGCCTTCATGGGA+TGG - chr4_1:59767213-59767232 Msa0560470:intron 55.0%
AGTGACCTGGCTGATGCCTA+CGG - chr4_1:59768423-59768442 Msa0560470:intron 55.0%
TACCAGTCAGGGAGGAACTC+CGG - chr4_1:59768791-59768810 Msa0560470:CDS 55.0%
TACTATGGCAGGCATCCCCG+AGG - chr4_1:59766159-59766178 Msa0560470:intron 60.0%
! GAGCCGATTCTACAGCCTCG+GGG + chr4_1:59766177-59766196 None:intergenic 60.0%
! CGAGCCGATTCTACAGCCTC+GGG + chr4_1:59766178-59766197 None:intergenic 60.0%
! GCGAGCCGATTCTACAGCCT+CGG + chr4_1:59766179-59766198 None:intergenic 60.0%
TGCCCATCTACTGGCAGTGG+TGG - chr4_1:59766676-59766695 Msa0560470:intron 60.0%
! ACGGGCTACATGGAGCCTTC+CGG + chr4_1:59766908-59766927 None:intergenic 60.0%
GCTCCATGTAGCCCGTGCTA+TGG - chr4_1:59766912-59766931 Msa0560470:intron 60.0%
GCCCGTGCTATGGTTGAAGC+AGG - chr4_1:59766922-59766941 Msa0560470:intron 60.0%
CAGGGGAAGTGAACCTGTGG+TGG - chr4_1:59767093-59767112 Msa0560470:CDS 60.0%
GGGAAGTGAACCTGTGGTGG+AGG - chr4_1:59767096-59767115 Msa0560470:CDS 60.0%
!! TACTGGGGGTGTTGCCGTTC+TGG - chr4_1:59767141-59767160 Msa0560470:CDS 60.0%
AGCAGGCCTTCATGGGATGG+AGG - chr4_1:59767216-59767235 Msa0560470:intron 60.0%
!! TACCGCCAACTTGGGCTAGC+CGG - chr4_1:59768204-59768223 Msa0560470:intron 60.0%
! TCTCACCGGCTAGCCCAAGT+TGG + chr4_1:59768212-59768231 None:intergenic 60.0%
!! TGGGCTAGCCGGTGAGATAG+AGG - chr4_1:59768215-59768234 Msa0560470:intron 60.0%
AAAGGCCGTAGGCATCAGCC+AGG + chr4_1:59768431-59768450 None:intergenic 60.0%
AACCGGAGTTCCTCCCTGAC+TGG + chr4_1:59768796-59768815 None:intergenic 60.0%
GCAGGCAACGGAGTTGCTCC+CGG - chr4_1:59766886-59766905 Msa0560470:intron 65.0%
GCAACGGAGTTGCTCCCGGA+AGG - chr4_1:59766890-59766909 Msa0560470:intron 65.0%
CGGGCTACATGGAGCCTTCC+GGG + chr4_1:59766907-59766926 None:intergenic 65.0%
! CACCGGCTAGCCCAAGTTGG+CGG + chr4_1:59768209-59768228 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 59765238 59769034 59765238 ID=Msa0560470;Name=Msa0560470
chr4_1 mRNA 59765238 59769034 59765238 ID=Msa0560470-mRNA-1;Parent=Msa0560470;Name=Msa0560470-mRNA-1;_AED=0.03;_eAED=0.03;_QI=192|1|1|1|1|1|5|204|450
chr4_1 exon 59765238 59765854 59765238 ID=Msa0560470-mRNA-1:exon:18555;Parent=Msa0560470-mRNA-1
chr4_1 exon 59767007 59767176 59767007 ID=Msa0560470-mRNA-1:exon:18554;Parent=Msa0560470-mRNA-1
chr4_1 exon 59767262 59767579 59767262 ID=Msa0560470-mRNA-1:exon:18553;Parent=Msa0560470-mRNA-1
chr4_1 exon 59768018 59768142 59768018 ID=Msa0560470-mRNA-1:exon:18552;Parent=Msa0560470-mRNA-1
chr4_1 exon 59768516 59769034 59768516 ID=Msa0560470-mRNA-1:exon:18551;Parent=Msa0560470-mRNA-1
chr4_1 five_prime_UTR 59768843 59769034 59768843 ID=Msa0560470-mRNA-1:five_prime_utr;Parent=Msa0560470-mRNA-1
chr4_1 CDS 59768516 59768842 59768516 ID=Msa0560470-mRNA-1:cds;Parent=Msa0560470-mRNA-1
chr4_1 CDS 59768018 59768142 59768018 ID=Msa0560470-mRNA-1:cds;Parent=Msa0560470-mRNA-1
chr4_1 CDS 59767262 59767579 59767262 ID=Msa0560470-mRNA-1:cds;Parent=Msa0560470-mRNA-1
chr4_1 CDS 59767007 59767176 59767007 ID=Msa0560470-mRNA-1:cds;Parent=Msa0560470-mRNA-1
chr4_1 CDS 59765442 59765854 59765442 ID=Msa0560470-mRNA-1:cds;Parent=Msa0560470-mRNA-1
chr4_1 three_prime_UTR 59765238 59765441 59765238 ID=Msa0560470-mRNA-1:three_prime_utr;Parent=Msa0560470-mRNA-1
Gene Sequence

>Msa0560470

ATGGGAGATGGTATCGCAATTCAAAGCACAAACAATTCAAACAAGAGCAATAAGGATAAGAAAAAGAAGAAGAAGAATAAGAACAGAGGTGGAAGCAAGAAGAAGATGACCCATGAACAAGTTTTGGCTTTTAAATTTGTAACTGAATGGGTTTCATTGGATAACCCTTCTTCTTTCGCTACTTCATCTCTTGTTGATGATTTTGGGGTGCAGAAGCCTGTTGGAAAAAATGGTGACAGAGTTGTGTTTGATTTGCACTGTCACTCTAAATGCAGTGATGGCTTTTTGTCTCCTTCTAAGGTTGTTGAGAGAGCCCACATGAACGGCGTGAAAGTTCTTGCTCTGACAGATCACGATACTATGGCAGGCATCCCCGAGGCTGTAGAATCGGCTCGCAAATATGGCATTAAGATAATCCCAGGTGTTGAAGTTAGTACAATATTTTATCCAAGTGGTGGAGACACTGAAGCAGAGGAACCTGTTCACGTTTTAGCATATTACAGCAGTATTGGACCATCAAAATTTGAGGAGCTAGATAAGTTTTTGTCAAACATAAGGGACGGACGTTATCTTCGAGCAAAGAACATGGTCTTAAAGCTTAACAAGCTAAAAATGGCTCTTAAATGGGAGCATGTTTGTAGGATTGCAGGCAACGGAGTTGCTCCCGGAAGGCTCCATGTAGCCCGTGCTATGGTTGAAGCAGGTTATGTTGAAAATCTCAAACAAGCCTTTGCCCGATATCTTTTTGATGGTGGACCTGCTTACTCCAAGGGAAGTGAACCTGTGGTGGAGGAAGCAATAAAAATGATTTGTGATACTGGGGGTGTTGCCGTTCTGGCTCATCCATGGGCATTAAAAAATCCTGTTGCTATCATTAGGAGGTTAAAAGAAGCAGGCCTTCATGGGATGGAGGTCTACAAAAGTGATGGAAGGCTTGCAGCATATAGTGACCTGGCTGATGCCTACGGCCTTTTGAAAATTGGAGGGTCAGACTATCATGGAAGAGGAGGACACCATGAATCTGAACTGGGAAGTGTAAACCTTCCAGTACTAGTTTTGCATGACTTTCTTAAGGTAGCTAGGCCTATATGGTGCAATGCTATAAGGGAATTATTGGAGTGTTATGCCGAGGAACCGTCTAATACTAACCTAGAAACAATTACAAGGTTTGGGAGAACCCGCATTTTTAAGGGAGGTTCACCCTTGTATTGTGGAAAGGATTTGATTGATCATTGTTTACCTCTTTGGTTAAGTAGCCAAGAGATGGAAAATGAAGAGTTTGAGGCTACCAAGTTGAAGCTTTCCAACGTTTCTACCAGTCAGGGAGGAACTCCGGTTCTCATAGAGACTTAG

Protein sequence

>Msa0560470

MGDGIAIQSTNNSNKSNKDKKKKKKNKNRGGSKKKMTHEQVLAFKFVTEWVSLDNPSSFATSSLVDDFGVQKPVGKNGDRVVFDLHCHSKCSDGFLSPSKVVERAHMNGVKVLALTDHDTMAGIPEAVESARKYGIKIIPGVEVSTIFYPSGGDTEAEEPVHVLAYYSSIGPSKFEELDKFLSNIRDGRYLRAKNMVLKLNKLKMALKWEHVCRIAGNGVAPGRLHVARAMVEAGYVENLKQAFARYLFDGGPAYSKGSEPVVEEAIKMICDTGGVAVLAHPWALKNPVAIIRRLKEAGLHGMEVYKSDGRLAAYSDLADAYGLLKIGGSDYHGRGGHHESELGSVNLPVLVLHDFLKVARPIWCNAIRELLECYAEEPSNTNLETITRFGRTRIFKGGSPLYCGKDLIDHCLPLWLSSQEMENEEFEATKLKLSNVSTSQGGTPVLIET*