Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824540 | XP_003617696.1 | 96.296 | 270 | 10 | 0 | 1 | 270 | 1 | 270 | 0.0 | 544 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824540 | G7K4D9 | 96.296 | 270 | 10 | 0 | 1 | 270 | 1 | 270 | 0.0 | 544 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0787680 | Msa0824540 | 0.863201 | 2.948444e-64 | -8.615850e-47 |
| Msa0787810 | Msa0824540 | 0.814626 | 1.399817e-51 | -8.615850e-47 |
| Msa0824540 | Msa0863690 | 0.830237 | 3.288269e-55 | -8.615850e-47 |
| Msa0824540 | Msa0903330 | 0.804421 | 2.177597e-49 | -8.615850e-47 |
| Msa0824540 | Msa1018790 | 0.829835 | 4.121712e-55 | -8.615850e-47 |
| Msa0824540 | Msa1150970 | 0.801584 | 8.403182e-49 | -8.615850e-47 |
| Msa0824540 | Msa1365200 | 0.811512 | 6.745466e-51 | -8.615850e-47 |
| Msa0824540 | Msa1438640 | 0.804037 | 2.618448e-49 | -8.615850e-47 |
| Msa0469910 | Msa0824540 | -0.813095 | 3.044379e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824540 | MtrunA17_Chr5g0445321 | 95.652 | 184 | 8 | 0 | 87 | 270 | 1 | 184 | 6.81e-132 | 370 |
| Msa0824540 | MtrunA17_Chr3g0114991 | 33.014 | 209 | 125 | 5 | 74 | 269 | 243 | 449 | 2.28e-33 | 126 |
| Msa0824540 | MtrunA17_Chr1g0156521 | 33.981 | 206 | 119 | 6 | 74 | 269 | 201 | 399 | 2.75e-30 | 117 |
| Msa0824540 | MtrunA17_Chr4g0042091 | 34.783 | 207 | 121 | 5 | 74 | 268 | 230 | 434 | 3.57e-28 | 111 |
| Msa0824540 | MtrunA17_Chr3g0104431 | 32.068 | 237 | 126 | 11 | 61 | 270 | 160 | 388 | 2.62e-24 | 100 |
| Msa0824540 | MtrunA17_Chr8g0376191 | 33.136 | 169 | 95 | 7 | 113 | 269 | 2 | 164 | 3.41e-19 | 82.4 |
| Msa0824540 | MtrunA17_Chr2g0280501 | 29.327 | 208 | 121 | 7 | 80 | 269 | 176 | 375 | 3.85e-17 | 80.1 |
| Msa0824540 | MtrunA17_Chr4g0056461 | 24.878 | 205 | 116 | 6 | 74 | 269 | 98 | 273 | 1.81e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824540 | AT5G54630.1 | 36.574 | 216 | 112 | 8 | 74 | 268 | 258 | 469 | 2.81e-27 | 110 |
| Msa0824540 | AT4G27240.1 | 34.703 | 219 | 118 | 8 | 68 | 268 | 217 | 428 | 3.05e-25 | 103 |
| Msa0824540 | AT1G75710.1 | 30.870 | 230 | 122 | 7 | 74 | 269 | 231 | 457 | 1.99e-23 | 99.4 |
| Msa0824540 | AT4G27240.2 | 35.754 | 179 | 97 | 5 | 68 | 234 | 217 | 389 | 4.53e-22 | 95.1 |
| Msa0824540 | AT2G29660.1 | 30.045 | 223 | 125 | 8 | 74 | 269 | 153 | 371 | 3.66e-20 | 89.4 |
| Msa0824540 | AT1G11490.2 | 28.054 | 221 | 138 | 8 | 65 | 269 | 148 | 363 | 5.36e-16 | 77.4 |
| Msa0824540 | AT1G11490.1 | 28.054 | 221 | 138 | 8 | 65 | 269 | 148 | 363 | 5.36e-16 | 77.4 |
| Msa0824540 | AT1G62520.1 | 30.769 | 208 | 105 | 8 | 72 | 269 | 100 | 278 | 2.42e-15 | 74.7 |
Find 43 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTCCCTTTGCCAAATTT+TGG | 0.172903 | 5_3:-63859266 | None:intergenic |
| TTTCCATCTACTGTGCTTCT+TGG | 0.204797 | 5_3:-63860141 | None:intergenic |
| ATAAGGCAGCCACCAAAATT+TGG | 0.275929 | 5_3:+63859254 | Msa0824540:CDS |
| ACAAACTCACTGATGTAATA+AGG | 0.337481 | 5_3:+63859237 | Msa0824540:CDS |
| GGAAGGTTAGAACAGTTCTA+AGG | 0.351359 | 5_3:+63860043 | Msa0824540:CDS |
| AGATCATGAACTTTCTTCAT+AGG | 0.351902 | 5_3:-63860213 | None:intergenic |
| CACATTCTTCACTCTTGCAT+TGG | 0.368988 | 5_3:-63860349 | None:intergenic |
| ATAGTTTGCAGGATAATTGC+TGG | 0.375937 | 5_3:+63860384 | Msa0824540:CDS |
| AGCCGAGCCTGTGTGTTGTT+TGG | 0.410884 | 5_3:-63859383 | None:intergenic |
| AACCTTCCTCAGTGGCTTTG+CGG | 0.412088 | 5_3:-63860028 | None:intergenic |
| AAACATTTAAAGCAGACAAA+AGG | 0.418695 | 5_3:-63859116 | None:intergenic |
| AGCCTGTGTGTTGTTTGGCT+TGG | 0.421270 | 5_3:-63859378 | None:intergenic |
| CATCCAAGAAGCACAGTAGA+TGG | 0.426284 | 5_3:+63860138 | Msa0824540:CDS |
| AGGAAGAAATGCAAGCCTTA+TGG | 0.429141 | 5_3:+63859183 | Msa0824540:exon |
| ACTGTGCTTCTTGGATGCCT+TGG | 0.430435 | 5_3:-63860132 | None:intergenic |
| CTTTCTTCATAGGTTTCCCT+TGG | 0.432529 | 5_3:-63860203 | None:intergenic |
| ACAAACACACACAAATTAAG+AGG | 0.454752 | 5_3:+63859163 | Msa0824540:five_prime_UTR |
| GAGTAGCTATGTTCTACAAA+AGG | 0.501056 | 5_3:+63859283 | Msa0824540:CDS |
| GTCTTTCAAAGACAACCATA+AGG | 0.501827 | 5_3:-63859198 | None:intergenic |
| AACATTTAAAGCAGACAAAA+GGG | 0.510124 | 5_3:-63859115 | None:intergenic |
| AGCCACCAAAATTTGGCAAA+GGG | 0.512723 | 5_3:+63859261 | Msa0824540:CDS |
| AGAAGATAACACCCCTCTCA+TGG | 0.514444 | 5_3:+63859331 | Msa0824540:CDS |
| AGATGATATTTCAGAAAGCA+TGG | 0.538196 | 5_3:+63859998 | Msa0824540:CDS |
| TAGCTGGAGTTTCCATGAGA+GGG | 0.547238 | 5_3:-63859343 | None:intergenic |
| CAGCCACCAAAATTTGGCAA+AGG | 0.555527 | 5_3:+63859260 | Msa0824540:CDS |
| TTGAAAGACAATGTCAAATG+TGG | 0.555657 | 5_3:+63859212 | Msa0824540:CDS |
| GTTCTGAGTGTGACTCAACT+AGG | 0.563240 | 5_3:+63860445 | Msa0824540:CDS |
| GAGTGTGACTCAACTAGGCT+AGG | 0.568204 | 5_3:+63860450 | Msa0824540:CDS |
| CACCGCAAAGCCACTGAGGA+AGG | 0.573143 | 5_3:+63860026 | Msa0824540:CDS |
| GAAGGTTAGAACAGTTCTAA+GGG | 0.574783 | 5_3:+63860044 | Msa0824540:CDS |
| AGCCAAACAACACACAGGCT+CGG | 0.581716 | 5_3:+63859381 | Msa0824540:CDS |
| CTAGCTGGAGTTTCCATGAG+AGG | 0.599140 | 5_3:-63859344 | None:intergenic |
| AGCTGGAGTTTCCATGAGAG+GGG | 0.600042 | 5_3:-63859342 | None:intergenic |
| TTGAAAATTATGACAAAACA+AGG | 0.601697 | 5_3:-63860528 | None:intergenic |
| ACTGCAGTGAATGAAGTTGA+TGG | 0.605466 | 5_3:+63860408 | Msa0824540:CDS |
| TGTATGTGTATGTGCTCATG+TGG | 0.606339 | 5_3:-63859143 | None:intergenic |
| ACTACAATGAGATGTTTCCA+AGG | 0.610196 | 5_3:+63860186 | Msa0824540:CDS |
| AAACAAGGAAGAATAGAACT+AGG | 0.612460 | 5_3:-63860513 | None:intergenic |
| TTCCAAGCCAAACAACACAC+AGG | 0.628310 | 5_3:+63859376 | Msa0824540:CDS |
| ACTTGACAAAATCGACACGA+TGG | 0.658301 | 5_3:-63860246 | None:intergenic |
| CTACAATGAGATGTTTCCAA+GGG | 0.668592 | 5_3:+63860187 | Msa0824540:CDS |
| ACTGTTCTAACCTTCCTCAG+TGG | 0.694897 | 5_3:-63860036 | None:intergenic |
| TGAACACCGCAAAGCCACTG+AGG | 0.723545 | 5_3:+63860022 | Msa0824540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTACTATTTATTTTATGT+AGG | + | chr5_3:63859893-63859912 | Msa0824540:intron | 10.0% |
| !!! | ATTTACTATTTATTTTATGT+AGG | + | chr5_3:63859893-63859912 | Msa0824540:intron | 10.0% |
| !! | ACAAAGTACAATTTAATAAT+AGG | - | chr5_3:63859846-63859865 | None:intergenic | 15.0% |
| !! | ACAAAGTACAATTTAATAAT+AGG | - | chr5_3:63859846-63859865 | None:intergenic | 15.0% |
| !!! | AAAGTGCTTATAAATAATGA+CGG | - | chr5_3:63859783-63859802 | None:intergenic | 20.0% |
| !!! | AAAAAGTTTTAATAGTTTGC+AGG | + | chr5_3:63860373-63860392 | Msa0824540:CDS | 20.0% |
| !! | TTGAAAATTATGACAAAACA+AGG | - | chr5_3:63860531-63860550 | None:intergenic | 20.0% |
| !!! | AAAGTGCTTATAAATAATGA+CGG | - | chr5_3:63859783-63859802 | None:intergenic | 20.0% |
| !!! | AAAAAGTTTTAATAGTTTGC+AGG | + | chr5_3:63860373-63860392 | Msa0824540:CDS | 20.0% |
| !! | TTGAAAATTATGACAAAACA+AGG | - | chr5_3:63860531-63860550 | None:intergenic | 20.0% |
| !! | AACATTTAAAGCAGACAAAA+GGG | - | chr5_3:63859118-63859137 | None:intergenic | 25.0% |
| !! | AAACATTTAAAGCAGACAAA+AGG | - | chr5_3:63859119-63859138 | None:intergenic | 25.0% |
| !!! | AAATAGTTTGCTACATTATG+TGG | - | chr5_3:63859641-63859660 | None:intergenic | 25.0% |
| !! | TCTCAACAATTTTTCTTGAA+GGG | - | chr5_3:63859981-63860000 | None:intergenic | 25.0% |
| !! | ATCTCAACAATTTTTCTTGA+AGG | - | chr5_3:63859982-63860001 | None:intergenic | 25.0% |
| !! | AACATTTAAAGCAGACAAAA+GGG | - | chr5_3:63859118-63859137 | None:intergenic | 25.0% |
| !! | AAACATTTAAAGCAGACAAA+AGG | - | chr5_3:63859119-63859138 | None:intergenic | 25.0% |
| !!! | AAATAGTTTGCTACATTATG+TGG | - | chr5_3:63859641-63859660 | None:intergenic | 25.0% |
| !! | TCTCAACAATTTTTCTTGAA+GGG | - | chr5_3:63859981-63860000 | None:intergenic | 25.0% |
| !! | ATCTCAACAATTTTTCTTGA+AGG | - | chr5_3:63859982-63860001 | None:intergenic | 25.0% |
| ACAAACACACACAAATTAAG+AGG | + | chr5_3:63859163-63859182 | Msa0824540:five_prime_UTR | 30.0% | |
| TTGAAAGACAATGTCAAATG+TGG | + | chr5_3:63859212-63859231 | Msa0824540:CDS | 30.0% | |
| ACAAACTCACTGATGTAATA+AGG | + | chr5_3:63859237-63859256 | Msa0824540:CDS | 30.0% | |
| !!! | TTCTCACACACAGTTTTAAA+TGG | - | chr5_3:63859473-63859492 | None:intergenic | 30.0% |
| AACTTGACTACATAACTTCT+CGG | - | chr5_3:63859510-63859529 | None:intergenic | 30.0% | |
| TTCTTACTACTAAACTCCTT+TGG | + | chr5_3:63859528-63859547 | Msa0824540:intron | 30.0% | |
| TCTTACTACTAAACTCCTTT+GGG | + | chr5_3:63859529-63859548 | Msa0824540:intron | 30.0% | |
| CATCAAAAACTTGACATCTA+AGG | - | chr5_3:63859737-63859756 | None:intergenic | 30.0% | |
| ! | TCCTCCACATTGTTAAATTT+TGG | + | chr5_3:63859936-63859955 | Msa0824540:intron | 30.0% |
| TCTGCCAAAATTTAACAATG+TGG | - | chr5_3:63859943-63859962 | None:intergenic | 30.0% | |
| AGATGATATTTCAGAAAGCA+TGG | + | chr5_3:63859998-63860017 | Msa0824540:CDS | 30.0% | |
| !! | AAGTGAAGAAAAAGTATCCA+AGG | + | chr5_3:63860115-63860134 | Msa0824540:CDS | 30.0% |
| AGATCATGAACTTTCTTCAT+AGG | - | chr5_3:63860216-63860235 | None:intergenic | 30.0% | |
| AAACAAGGAAGAATAGAACT+AGG | - | chr5_3:63860516-63860535 | None:intergenic | 30.0% | |
| ACAAACACACACAAATTAAG+AGG | + | chr5_3:63859163-63859182 | Msa0824540:five_prime_UTR | 30.0% | |
| TTGAAAGACAATGTCAAATG+TGG | + | chr5_3:63859212-63859231 | Msa0824540:CDS | 30.0% | |
| ACAAACTCACTGATGTAATA+AGG | + | chr5_3:63859237-63859256 | Msa0824540:CDS | 30.0% | |
| !!! | TTCTCACACACAGTTTTAAA+TGG | - | chr5_3:63859473-63859492 | None:intergenic | 30.0% |
| AACTTGACTACATAACTTCT+CGG | - | chr5_3:63859510-63859529 | None:intergenic | 30.0% | |
| TTCTTACTACTAAACTCCTT+TGG | + | chr5_3:63859528-63859547 | Msa0824540:intron | 30.0% | |
| TCTTACTACTAAACTCCTTT+GGG | + | chr5_3:63859529-63859548 | Msa0824540:intron | 30.0% | |
| CATCAAAAACTTGACATCTA+AGG | - | chr5_3:63859737-63859756 | None:intergenic | 30.0% | |
| ! | TCCTCCACATTGTTAAATTT+TGG | + | chr5_3:63859936-63859955 | Msa0824540:intron | 30.0% |
| TCTGCCAAAATTTAACAATG+TGG | - | chr5_3:63859943-63859962 | None:intergenic | 30.0% | |
| AGATGATATTTCAGAAAGCA+TGG | + | chr5_3:63859998-63860017 | Msa0824540:CDS | 30.0% | |
| !! | AAGTGAAGAAAAAGTATCCA+AGG | + | chr5_3:63860115-63860134 | Msa0824540:CDS | 30.0% |
| AGATCATGAACTTTCTTCAT+AGG | - | chr5_3:63860216-63860235 | None:intergenic | 30.0% | |
| AAACAAGGAAGAATAGAACT+AGG | - | chr5_3:63860516-63860535 | None:intergenic | 30.0% | |
| GTCTTTCAAAGACAACCATA+AGG | - | chr5_3:63859201-63859220 | None:intergenic | 35.0% | |
| GAGTAGCTATGTTCTACAAA+AGG | + | chr5_3:63859283-63859302 | Msa0824540:CDS | 35.0% | |
| ! | TTGGAAAAAACTAGTCTAGC+TGG | - | chr5_3:63859362-63859381 | None:intergenic | 35.0% |
| TATGTCGTGTTCATGCATAT+AGG | - | chr5_3:63859560-63859579 | None:intergenic | 35.0% | |
| ! | CAGTATCAAACTTGTTTCCA+TGG | + | chr5_3:63859691-63859710 | Msa0824540:intron | 35.0% |
| CAGAGACTTTGTTAAATCCA+TGG | - | chr5_3:63859711-63859730 | None:intergenic | 35.0% | |
| GTGCTTATAAATAATGACGG+AGG | - | chr5_3:63859780-63859799 | None:intergenic | 35.0% | |
| GCCAAAATTTAACAATGTGG+AGG | - | chr5_3:63859940-63859959 | None:intergenic | 35.0% | |
| !! | TGTTAAATTTTGGCAGAGCT+TGG | + | chr5_3:63859946-63859965 | Msa0824540:intron | 35.0% |
| ! | GAAGGTTAGAACAGTTCTAA+GGG | + | chr5_3:63860044-63860063 | Msa0824540:CDS | 35.0% |
| ACTACAATGAGATGTTTCCA+AGG | + | chr5_3:63860186-63860205 | Msa0824540:CDS | 35.0% | |
| CTACAATGAGATGTTTCCAA+GGG | + | chr5_3:63860187-63860206 | Msa0824540:CDS | 35.0% | |
| ! | ATAGTTTGCAGGATAATTGC+TGG | + | chr5_3:63860384-63860403 | Msa0824540:CDS | 35.0% |
| GTCTTTCAAAGACAACCATA+AGG | - | chr5_3:63859201-63859220 | None:intergenic | 35.0% | |
| GAGTAGCTATGTTCTACAAA+AGG | + | chr5_3:63859283-63859302 | Msa0824540:CDS | 35.0% | |
| ! | TTGGAAAAAACTAGTCTAGC+TGG | - | chr5_3:63859362-63859381 | None:intergenic | 35.0% |
| TATGTCGTGTTCATGCATAT+AGG | - | chr5_3:63859560-63859579 | None:intergenic | 35.0% | |
| ! | CAGTATCAAACTTGTTTCCA+TGG | + | chr5_3:63859691-63859710 | Msa0824540:intron | 35.0% |
| CAGAGACTTTGTTAAATCCA+TGG | - | chr5_3:63859711-63859730 | None:intergenic | 35.0% | |
| GTGCTTATAAATAATGACGG+AGG | - | chr5_3:63859780-63859799 | None:intergenic | 35.0% | |
| GCCAAAATTTAACAATGTGG+AGG | - | chr5_3:63859940-63859959 | None:intergenic | 35.0% | |
| !! | TGTTAAATTTTGGCAGAGCT+TGG | + | chr5_3:63859946-63859965 | Msa0824540:intron | 35.0% |
| ! | GAAGGTTAGAACAGTTCTAA+GGG | + | chr5_3:63860044-63860063 | Msa0824540:CDS | 35.0% |
| ACTACAATGAGATGTTTCCA+AGG | + | chr5_3:63860186-63860205 | Msa0824540:CDS | 35.0% | |
| CTACAATGAGATGTTTCCAA+GGG | + | chr5_3:63860187-63860206 | Msa0824540:CDS | 35.0% | |
| ! | ATAGTTTGCAGGATAATTGC+TGG | + | chr5_3:63860384-63860403 | Msa0824540:CDS | 35.0% |
| TGTATGTGTATGTGCTCATG+TGG | - | chr5_3:63859146-63859165 | None:intergenic | 40.0% | |
| AGGAAGAAATGCAAGCCTTA+TGG | + | chr5_3:63859183-63859202 | Msa0824540:exon | 40.0% | |
| ATAAGGCAGCCACCAAAATT+TGG | + | chr5_3:63859254-63859273 | Msa0824540:CDS | 40.0% | |
| AGCCACCAAAATTTGGCAAA+GGG | + | chr5_3:63859261-63859280 | Msa0824540:CDS | 40.0% | |
| ! | CTACTCCCTTTGCCAAATTT+TGG | - | chr5_3:63859269-63859288 | None:intergenic | 40.0% |
| ACTACATAACTTCTCGGACA+CGG | - | chr5_3:63859504-63859523 | None:intergenic | 40.0% | |
| !! | ATTTTGGCAGAGCTTGGTAT+TGG | + | chr5_3:63859952-63859971 | Msa0824540:intron | 40.0% |
| GGAAGGTTAGAACAGTTCTA+AGG | + | chr5_3:63860043-63860062 | Msa0824540:CDS | 40.0% | |
| TTTCCATCTACTGTGCTTCT+TGG | - | chr5_3:63860144-63860163 | None:intergenic | 40.0% | |
| CTTTCTTCATAGGTTTCCCT+TGG | - | chr5_3:63860206-63860225 | None:intergenic | 40.0% | |
| ACTTGACAAAATCGACACGA+TGG | - | chr5_3:63860249-63860268 | None:intergenic | 40.0% | |
| CACATTCTTCACTCTTGCAT+TGG | - | chr5_3:63860352-63860371 | None:intergenic | 40.0% | |
| ACTGCAGTGAATGAAGTTGA+TGG | + | chr5_3:63860408-63860427 | Msa0824540:CDS | 40.0% | |
| TGTATGTGTATGTGCTCATG+TGG | - | chr5_3:63859146-63859165 | None:intergenic | 40.0% | |
| AGGAAGAAATGCAAGCCTTA+TGG | + | chr5_3:63859183-63859202 | Msa0824540:exon | 40.0% | |
| ATAAGGCAGCCACCAAAATT+TGG | + | chr5_3:63859254-63859273 | Msa0824540:CDS | 40.0% | |
| AGCCACCAAAATTTGGCAAA+GGG | + | chr5_3:63859261-63859280 | Msa0824540:CDS | 40.0% | |
| ! | CTACTCCCTTTGCCAAATTT+TGG | - | chr5_3:63859269-63859288 | None:intergenic | 40.0% |
| ACTACATAACTTCTCGGACA+CGG | - | chr5_3:63859504-63859523 | None:intergenic | 40.0% | |
| !! | ATTTTGGCAGAGCTTGGTAT+TGG | + | chr5_3:63859952-63859971 | Msa0824540:intron | 40.0% |
| GGAAGGTTAGAACAGTTCTA+AGG | + | chr5_3:63860043-63860062 | Msa0824540:CDS | 40.0% | |
| TTTCCATCTACTGTGCTTCT+TGG | - | chr5_3:63860144-63860163 | None:intergenic | 40.0% | |
| CTTTCTTCATAGGTTTCCCT+TGG | - | chr5_3:63860206-63860225 | None:intergenic | 40.0% | |
| ACTTGACAAAATCGACACGA+TGG | - | chr5_3:63860249-63860268 | None:intergenic | 40.0% | |
| CACATTCTTCACTCTTGCAT+TGG | - | chr5_3:63860352-63860371 | None:intergenic | 40.0% | |
| ACTGCAGTGAATGAAGTTGA+TGG | + | chr5_3:63860408-63860427 | Msa0824540:CDS | 40.0% | |
| CAGCCACCAAAATTTGGCAA+AGG | + | chr5_3:63859260-63859279 | Msa0824540:CDS | 45.0% | |
| ! | CTCCCTTTGCCAAATTTTGG+TGG | - | chr5_3:63859266-63859285 | None:intergenic | 45.0% |
| AGAAGATAACACCCCTCTCA+TGG | + | chr5_3:63859331-63859350 | Msa0824540:CDS | 45.0% | |
| TAGCTGGAGTTTCCATGAGA+GGG | - | chr5_3:63859346-63859365 | None:intergenic | 45.0% | |
| TTCCAAGCCAAACAACACAC+AGG | + | chr5_3:63859376-63859395 | Msa0824540:CDS | 45.0% | |
| TGCATATAGGAGCAACCCAA+AGG | - | chr5_3:63859547-63859566 | None:intergenic | 45.0% | |
| ACTGTTCTAACCTTCCTCAG+TGG | - | chr5_3:63860039-63860058 | None:intergenic | 45.0% | |
| ! | CATCCAAGAAGCACAGTAGA+TGG | + | chr5_3:63860138-63860157 | Msa0824540:CDS | 45.0% |
| !! | CAATTTTGACGCGAAACACG+CGG | + | chr5_3:63860278-63860297 | Msa0824540:CDS | 45.0% |
| ! | GTTCTGAGTGTGACTCAACT+AGG | + | chr5_3:63860445-63860464 | Msa0824540:CDS | 45.0% |
| CAGCCACCAAAATTTGGCAA+AGG | + | chr5_3:63859260-63859279 | Msa0824540:CDS | 45.0% | |
| ! | CTCCCTTTGCCAAATTTTGG+TGG | - | chr5_3:63859266-63859285 | None:intergenic | 45.0% |
| AGAAGATAACACCCCTCTCA+TGG | + | chr5_3:63859331-63859350 | Msa0824540:CDS | 45.0% | |
| TAGCTGGAGTTTCCATGAGA+GGG | - | chr5_3:63859346-63859365 | None:intergenic | 45.0% | |
| TTCCAAGCCAAACAACACAC+AGG | + | chr5_3:63859376-63859395 | Msa0824540:CDS | 45.0% | |
| TGCATATAGGAGCAACCCAA+AGG | - | chr5_3:63859547-63859566 | None:intergenic | 45.0% | |
| ACTGTTCTAACCTTCCTCAG+TGG | - | chr5_3:63860039-63860058 | None:intergenic | 45.0% | |
| ! | CATCCAAGAAGCACAGTAGA+TGG | + | chr5_3:63860138-63860157 | Msa0824540:CDS | 45.0% |
| !! | CAATTTTGACGCGAAACACG+CGG | + | chr5_3:63860278-63860297 | Msa0824540:CDS | 45.0% |
| ! | GTTCTGAGTGTGACTCAACT+AGG | + | chr5_3:63860445-63860464 | Msa0824540:CDS | 45.0% |
| AGCTGGAGTTTCCATGAGAG+GGG | - | chr5_3:63859345-63859364 | None:intergenic | 50.0% | |
| CTAGCTGGAGTTTCCATGAG+AGG | - | chr5_3:63859347-63859366 | None:intergenic | 50.0% | |
| !! | AGCCTGTGTGTTGTTTGGCT+TGG | - | chr5_3:63859381-63859400 | None:intergenic | 50.0% |
| AGCCAAACAACACACAGGCT+CGG | + | chr5_3:63859381-63859400 | Msa0824540:CDS | 50.0% | |
| ! | AACACACAGGCTCGGCTTTT+CGG | + | chr5_3:63859389-63859408 | Msa0824540:CDS | 50.0% |
| TGACGGAGGAGAAACAATCG+CGG | - | chr5_3:63859766-63859785 | None:intergenic | 50.0% | |
| ! | AACCTTCCTCAGTGGCTTTG+CGG | - | chr5_3:63860031-63860050 | None:intergenic | 50.0% |
| ACTGTGCTTCTTGGATGCCT+TGG | - | chr5_3:63860135-63860154 | None:intergenic | 50.0% | |
| GAGTGTGACTCAACTAGGCT+AGG | + | chr5_3:63860450-63860469 | Msa0824540:CDS | 50.0% | |
| AGCTGGAGTTTCCATGAGAG+GGG | - | chr5_3:63859345-63859364 | None:intergenic | 50.0% | |
| CTAGCTGGAGTTTCCATGAG+AGG | - | chr5_3:63859347-63859366 | None:intergenic | 50.0% | |
| !! | AGCCTGTGTGTTGTTTGGCT+TGG | - | chr5_3:63859381-63859400 | None:intergenic | 50.0% |
| AGCCAAACAACACACAGGCT+CGG | + | chr5_3:63859381-63859400 | Msa0824540:CDS | 50.0% | |
| ! | AACACACAGGCTCGGCTTTT+CGG | + | chr5_3:63859389-63859408 | Msa0824540:CDS | 50.0% |
| TGACGGAGGAGAAACAATCG+CGG | - | chr5_3:63859766-63859785 | None:intergenic | 50.0% | |
| ! | AACCTTCCTCAGTGGCTTTG+CGG | - | chr5_3:63860031-63860050 | None:intergenic | 50.0% |
| ACTGTGCTTCTTGGATGCCT+TGG | - | chr5_3:63860135-63860154 | None:intergenic | 50.0% | |
| GAGTGTGACTCAACTAGGCT+AGG | + | chr5_3:63860450-63860469 | Msa0824540:CDS | 50.0% | |
| ! | AGCCGAGCCTGTGTGTTGTT+TGG | - | chr5_3:63859386-63859405 | None:intergenic | 55.0% |
| TGAACACCGCAAAGCCACTG+AGG | + | chr5_3:63860022-63860041 | Msa0824540:CDS | 55.0% | |
| ! | AGCCGAGCCTGTGTGTTGTT+TGG | - | chr5_3:63859386-63859405 | None:intergenic | 55.0% |
| TGAACACCGCAAAGCCACTG+AGG | + | chr5_3:63860022-63860041 | Msa0824540:CDS | 55.0% | |
| CACCGCAAAGCCACTGAGGA+AGG | + | chr5_3:63860026-63860045 | Msa0824540:CDS | 60.0% | |
| CACCGCAAAGCCACTGAGGA+AGG | + | chr5_3:63860026-63860045 | Msa0824540:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 63859107 | 63860554 | 63859107 | ID=Msa0824540;Name=Msa0824540 |
| chr5_3 | mRNA | 63859107 | 63860554 | 63859107 | ID=Msa0824540-mRNA-1;Parent=Msa0824540;Name=Msa0824540-mRNA-1;_AED=0.01;_eAED=0.01;_QI=84|1|0.5|1|1|1|2|0|270 |
| chr5_3 | exon | 63859107 | 63859410 | 63859107 | ID=Msa0824540-mRNA-1:exon:19923;Parent=Msa0824540-mRNA-1 |
| chr5_3 | exon | 63859962 | 63860554 | 63859962 | ID=Msa0824540-mRNA-1:exon:19924;Parent=Msa0824540-mRNA-1 |
| chr5_3 | five_prime_UTR | 63859107 | 63859190 | 63859107 | ID=Msa0824540-mRNA-1:five_prime_utr;Parent=Msa0824540-mRNA-1 |
| chr5_3 | CDS | 63859191 | 63859410 | 63859191 | ID=Msa0824540-mRNA-1:cds;Parent=Msa0824540-mRNA-1 |
| chr5_3 | CDS | 63859962 | 63860554 | 63859962 | ID=Msa0824540-mRNA-1:cds;Parent=Msa0824540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
